Tag: proteins


Found 176 sources
Source Match ReputationScore*

UniProt Knowledgebase


Universal Protein resource. A database of protein sequence and functional information, many entries being derived from genome sequencing projects. It contains a large amount of information about the biological function of proteins derived from the re ...
100%

Pfam


The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related entries, known as clans. A clan is a collection of Pf ...
77%

PRoteomics IDEntifications database


The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.
69%

Sequence Read Archive


The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submissi ...
66%

Database of Interacting Proteins


The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions
60%

The Human Metabolome Database


The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.
60%

CATH Protein Structure Classification


The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class ( ...
59%

ArrayExpress


ArrayExpress is a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Data is collected to MIAME and MINSEQE standards. Expe ...
59%

Structural Classification Of Proteins


The SCOP database is a curated both manually and with the use of automated tools. This freely available resource aims to provide a comprehensive description of the structural and evolutionary relationships between all proteins whose structure is know ...
55%

BRENDA


BRENDA is the main collection of enzyme functional data available to the scientific community.
53%

Human Protein Reference Database


The Human Protein Reference Database represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in ...
52%

MEROPS


The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.
52%

Integrated resource of protein families, domains and functional sites


InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as si ...
52%

NCBI Gene


The Entrez Global Query Cross-Database Search System is a federated search engine, or web portal that allows users to search many discrete health sciences databases at the National Center for Biotechnology Information (NCBI) website. Entrez can effic ...
52%

Ensembl Genomes


The Ensembl genome annotation system, developed jointly by EMBL-EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented b ...
52%

BioModels


BioModels is a repository of computational models of biological processes. It allows users to search and retrieve mathematical models published in the literature. Many models are manually curated (to ensure reproducibility) and extensively cross-link ...
52%

PeptideAtlas


The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.
51%

Electron Microscopy Data Bank


Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps ...
51%

Protein Data Bank in Europe


The Protein Data Bank in Europe (PDBe) is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. It is a founding member of the worldwide Protein Data Bank which collects, organises a ...
51%

PhosphoSite Plus


PhosphoSite Plus provides extensive information on mammalian post-translational modifications (PTMs). The resource supersedes PhosphoSite a mammalian protein database that provides information about in vivo phosphorylation sites.
49%

Worldwide Protein Data Bank


The Worldwide PDB (wwPDB) organization manages the PDB archive and ensures that the PDB is freely and publicly available to the global community. The mission of the wwPDB is to maintain a single Protein Data Bank Archive of macromolecular structural ...
49%

VectorBase


VectorBase is a web-accessible data repository for information about invertebrate vectors of human pathogens. VectorBase annotates and maintains vector genomes providing an integrated resource for the research community. Currently, VectorBase contain ...
49%

Virus Pathogen Database and Analysis Resource


The Virus Pathogen Database and Analysis Resource (ViPR) is an integrated repository of data and analysis tools for multiple virus families, supported by the National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Center ...
48%

PRotein Ontology


Protein Ontology (PRO) provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct class of entities (including specific modified forms ...
48%

ExPASy Bioinformatics Resource Portal


Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositorie ...
48%

InnateDB


InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactio ...
47%

Search Tool for Interactions of Chemicals


STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.
47%

Biological Magnetic Resonance Databank


BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scie ...
46%

Nucleic Acids Database


The NDB contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nuclei ...
44%

Restriction enzymes and methylases database


A collection of information about restriction enzymes and related proteins. It contains published and unpublished references, recognition and cleavage sites, isoschizomers, commercial availability, methylation sensitivity, crystal, genome, and sequen ...
44%

NCBI


The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information
43%

Protein Data Bank Japan


The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
43%

UniGene gene-oriented nucleotide sequence clusters


Each UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.
43%

Database of MHC Ligands and Peptide Motifs


SYFPEITHI is a database comprising more than 7000 peptide sequences known to bind class I and class II MHC molecules.
42%

CAPS-DB : a structural classification of helix-capping motifs


CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical c ...
41%

PRINTS


PRINTS is a collection of groups of conserved protein motifs, called fingerprints, used to define a protein family.
41%

MatrixDB: Extracellular Matrix Interaction Database


MatrixDB stores experimental data established by full-length proteins, matricryptins, glycosaminoglycans, lipids and cations. MatrixDB reports interactions with individual polypeptide chains or with multimers (e.g. collagens, laminins, thrombospondin ...
41%

Universal PBM Resource for Oligonucleotide Binding Evaluation


The UniPROBE (Universal PBM Resource for Oligonucleotide Binding Evaluation) database hosts data generated by universal protein binding microarray (PBM) technology on the in vitro DNA binding specificities of proteins.
41%

neXtProt


neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.
41%

BioSystems


The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources. The resource provides categorical information ...
41%

Molecular Modeling Database (MMDB)


The Molecular Modeling Database (MMDB), as part of the Entrez system, facilitates access to structure data by connecting them with associated literature, protein and nucleic acid sequences, chemicals, biomolecular interactions, and more.
40%

Open Provenance Model


The Open Provenance Model (OPM) is a model of provenance that is designed to meet the following requirements: (1) To allow provenance information to be exchanged between systems, by means of a compatibility layer based on a shared provenance model. ( ...
40%

ArachnoServer: Spider toxin database


ArachnoServer is a manually curated database containing information on the sequence, three-dimensional structure, and biological activity of protein toxins derived from spider venom.
40%

PASS2


PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic version of the original superfamily alignment database, CAMPASS (CAMbridge database of Protein Alignments organised as Structural Superfamilies). PASS2 con ...
39%

Protein Circular Dichroism Data Bank


The Protein Circular Dichroism Data Bank (PCDDB) is an open-access online repository for protein circular dichroism spectral- and meta-data. Users may freely extract and deposit validated data and the validation process is conveniently integrated int ...
39%

Termini-Oriented Protein Function INferred Database


TopFIND is a protein-centric database for the annotation of protein termini currently in its third version. Non-canonical protein termini can be the result of multiple different biological processes, including pre-translational processes such as alte ...
39%

IMGT/3Dstructure-DB


IMGT/3Dstructure-DB (1,2) is the three-dimensional (3D) structure database of IMGT®, the international ImMunoGenetics information system® (3,4) that is acknowledged as the global reference in immunogenetics and immunoinformatics. IMGT ...
39%

SABIO-RK Biochemical Reaction Kinetics Database


SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured.
39%

e-Mouse Atlas of Gene Expression


EMAGE is a database of in situ gene expression data in the mouse embryo. mRNA in situ hybridisation, protein immunohistochemistry, in situ transgenic reporter data, and in situ enhancer data is included. These are sourced from the community and curat ...
39%

Protein Interaction Network Analysis platform


Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization, and management. It integrates protein-protein interaction (PPI) data from public curated ...
39%

MGI Mouse Gene Expression Database


The Gene Expression Database (GXD) is a community resource for gene expression information from the laboratory mouse. GXD stores and integrates different types of expression data and makes these data freely available in formats appropriate for compre ...
38%

zfishbook


Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides services for any size of GBT mutagenesis projects on zebrafish to encourage collaboration in the research community.
38%

SNPeffect


SNPeffect is a database for phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect primarily focuses on the molecular characterization and annotation of disease and polymorphism variants in the human proteome. Further, SNPeffect holds pe ...
38%

HotRegion


Database of interaction Hotspots across the proteome. Hot spots are energetically important residues at protein interfaces and they are not randomly distributed across the interface but rather clustered. These clustered hot spots form hot regions. Ho ...
37%

Ensembl Fungi


Ensembl Fungi is a browser for fungal genomes. A majority of these are taken from the databases of the International Nucleotide Sequence Database Collaboration (the European Nucleotide Archive at the EBI, GenBank at the NCBI, and the DNA Database of ...
37%

Ensembl Plants


Ensembl Plants holds the genomes of plants of significant interest. These range from those of agricultural importance, those which support primary research and of environmental interest. Ensembl Plants datasets are constructed in a direct collaborati ...
37%

Gene3D


Gene3D takes CATH domain families (from PDB structures) and assigns them to the millions protein sequences (using Hidden Markov models generated from HMMER) with no PDB structures.
37%

GlycomeDB


GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.
37%

Bacterial protein tYrosine Kinase database


The Bacterial protein tYrosine Kinase database (BYKdb) contains computer-annotated BY-kinase sequences. The database web interface allows static and dynamic queries and provides integrated analysis tools including sequence annotation.
37%

The Global Proteome Machine Database


Rather than being a complete record of a proteomics experiment, this database holds the minimum amount of information necessary for certain bioinformatics-related tasks, such as sequence assignment validation. Most of the data is held in a set of XML ...
37%

Major Intrinsic Proteins Modification Database


This is a database of comparative protein structure models of the MIP (Major Intrinsic Protein) family of proteins. The MIPs have been identified from the completed genome sequence of organisms available at NCBI.
36%

RBPDB


RNA-binding proteins and their specificities
36%

RESID Database of Protein Modifications


The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.
36%

DNASU Plasmid Repository


DNASU is a central repository for plasmid clones and collections. Currently we store and distribute over 197,000 plasmids including 75,000 human and mouse plasmids, full genome collections, the protein expression plasmids from the Protein Structure I ...
36%

PHOSIDA


Phosphorylation sites in various species identified by mass spectrometry
35%

Mammalian Protein Localization Database


LOCATE is a curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM4 mouse and human protein sequence set.
35%

Online Mendelian Inheritance in Animals


Online Mendelian Inheritance in Animals is a a database of genes, inherited disorders and traits in animal species (other than human and mouse).
35%

Non-Ribosomal Peptides Database


Norine is a platform that includes a database of nonribosomal peptides together with tools for their analysis. Norine currently contains more than 1000 peptides.
35%

WHAT IF


PDB Related Datbases present a series of databases that run parallel to the PDB. DSSP holds the secondary structure of the proteins. PDBREPORT holds reports on the structure quality and lists errors. HSSP holds a multiple sequence alignment for all p ...
35%

Intrinsically Disordered proteins with Extensive Annotations and Literature


IDEAL (Intrinsically Disordered proteins with Extensive Annotations and Literature) is a collection of experimentally-verified intrinsically disordered proteins (IDPs) that cannot adopt stable globular structures under physiological conditions. IDEAL ...
35%

Human Gene and Protein Database


Human Gene and Protein Database (HGPD) presents SDS-PAGE patterns and other informations of human genes and proteins.
35%

Interolog Regulog Database


Database of protein orthologs that interact (interologs) and proteins with conserved regulatory relationships across species (regulogs). Contains data for C. elegans, Drosophila, Arabidopsis, and Yeast.
35%

Protein-Chemical Structural Interactions


Protein-Chemical Structural Interactions provides information on the 3-dimensional chemical structures of protein interactions with low molecular weight.
34%

Compendium of Protein Lysine Modifications


CPLM (Compendium of Protein Lysine Modifications) is an online data resource specifically designed for protein lysine modifications (PLMs).
34%

NRG-CING


Validated NMR structures of proteins and nucleic acids.
34%

MiCroKiTS


This resource is a collection of all proteins identified to be localized on kinetochore, centrosome, midbody, telomere and spindle from two fungi (S. cerevisiae and S. pombe) and five animals, including C. elegans, D. melanogaster, X. laevis, M. musc ...
34%

MutDB


The goal of MutDB is to annotate human variation data with protein structural information and other functionally relevant information, if available. The mutations are organized by gene. Click on the alphabet below to go alphabetically through the lis ...
34%

PSORTdb


Protein subcellular localization (SCL) is important for understanding protein function, genome annotation, and aids identification of potential cell surface diagnostic markers, drug targets, or vaccine components. PSORTdb comprises ePSORTdb, a manual ...
33%

UniCarbKB


UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by que ...
33%

Herb Ingredient Targets


Herbal active Ingredients and their Targets
33%

Bacterial Protein Interaction Database


Bacteriome.org is a database integrating physical (protein-protein) and functional interactions within the context of an E. coli knowledgebase.
33%

Compilation and Creation of datasets from PDB


ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for structural or functional annotation of proteins. There are numerous datasets from the literature and the Protein Data Bank (PDB), which were used for ...
33%

Autophagy Database


Proteins involved in self-digestion of eukaryotic cells
33%

IMGT database of human MHC


Provides a searchable repository of highly curated HLA sequences. The naming of these HLA genes and alleles and their quality control is the responsibility of the WHO Nomenclature Committee for Factors of the HLA System. Through the work of the HLA I ...
32%

EMDataBank.org


EMDataBank.org is a resource for deposition and retrieval of cryoEM maps, models and associated metadata. The resource unifies public access to the two major archives containing EM-based structural data: EM Data Bank (EMDB) and Protein Data Bank (PDB ...
32%

Mechanism and Catalytic Site Atlas


M-CSA is a database of enzyme reaction mechanisms. It provides annotation on the protein, catalytic residues, cofactors, and the reaction mechanisms of hundreds of enzymes. There are two kinds of entries in M-CSA: 'Detailed mechanism' entries are mor ...
32%

InterEvol database : Diving into the structure and evolution of protein complex interfaces


Evolution of protein-protein Interfaces InterEvol is a resource for researchers to investigate the structural interaction of protein molecules and sequences using a variety of tools and resources.
32%

Effective


Predicted secreted bacterial proteins
32%

CancerPPD


Experimentally validated anticancer peptides
31%

Allosteric Database


Allostery is the most direct and efficient way for regulation of biological macromolecule function induced by the binding of a ligand at an allosteric site topographically distinct from the orthosteric site. Due to the inherent high receptor selectiv ...
31%

PRIDB


Protein-RNA Interface Database
31%

ProtCID


Protein Common Interface Database
31%

Negatome


A database of non-interacting proteins
31%

PREX


PeroxiRedoxin classification indEX
31%

PepX


A non-redundant database of protein-peptide complexes
31%

PDBselect


PDBselect (http://bioinfo.tg.fh-giessen.de/pdbselect/) is a list of representative protein chains with low mutal sequence identity selected from the protein data bank (PDB) to enable unbiased statistics. The list increased from 155 chains in 1992 to ...
31%

HitPredict


Quality assessed protein-protein interactions in 9 species
31%

TcoF-DB


Database for Human Transcription Co-Factors
31%

RegPhos


Regulatory Network in Protein Phosphorylation
31%

Hemolytik


A Database of Hemolytic and Non-hemolytic Peptides
31%

MolMovDB


The Database of Macromolecular Movements (MolMovDB) contains a collection of animated protein and RNA structures to assist in the exploration of macromolecular flexibility. Software for structure analysis is also available.
31%

COMBREX


Computational Bridge to Experiments
31%

3D-Footprint


Estimates of DNA-binding specificity for protein-DNA complexes in PDB
30%

Indel Flanking Region Database


Indel Flanking Region Database is an online resource for indels (insertion/deletions) and the flanking regions of proteins in SCOP superfamilies. It aims at providing a comprehensive dataset for analyzing the qualities of amino acid indels, substitut ...
30%

Death Domain Database


Death Domain Database is a manually curated database of protein-protein interactions for Death Domain Superfamily.
30%

P2CS


Prokaryotic 2-Component Systems database
30%

Brix


Protein building blocks for structural analysis, modeling and design
30%

CUBE-DB


Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family class ...
30%

Ciona intestinalis Protein Database


CIPRO is an integrated protein that has been developed to provide widespread information of the proteins expressed in the ascidian Ciona intestinalis, especially for the researcher who wants to get advance and useful information for starting biologic ...
30%

OMPdb


Beta-barrel outer membrane proteins from Gram-negative bacteria
30%

Isobase


IsoRank PPI Network Alignment Based Ortholog Database
30%

SuperSweet


Natural and artificial sweetening agents
30%

ComSin


Protein structures in bound and unbound states
30%

CharProtDB


Experimentally Characterized Protein annotations
29%

LocDB


Experimental annotations of localization for Homo sapiens and Arabidopsis thaliana
29%

Protein Geometry Database


Protein conformation and bond angles and lengths
29%

ADPriboDB


ADP-ribosylated proteins and sites
29%

FunShift


Functional divergence between the subfamilies of a protein domain family
29%

SpliceAid


Experimental RNA target motifs bound by splicing proteins in humans.
29%

AtPID


Arabidopsis thaliana Protein Interactome Database
29%

Apo and Holo structures DataBase


AH-DB (Apo and Holo structures DataBase) collects the apo and holo structure pairs of proteins. Proteins are frequently associated with other molecules to perform their functions. Experimental structures determined in the bound state are named holo s ...
29%

SALAD


It is a unique comparative genomics database from plant-genome-based proteome data sets. Evolutionarily conserved motifs were extracted by MEME software from protein-sequence annotation groups selected by BLASTP from the proteome data sets of 10 spec ...
29%

FunSimMat


Gene Ontology-based functional similarity values for proteins and protein families
29%

HypoxiaDB


HypoxiaDB is a manually-curated non-redundant catalogue of human hypoxia-regulated proteins with a goal of collecting proteins whose expression patterns are altered in hypoxic conditions.
29%

PolyQ


Polyglutamine Repeats in Proteins
29%

PCDB


Protein Conformational Diversity database
29%

FPbase


Community-editable fluorescent protein database, cataloging an expanded range of proteins and parameters, including a new spectra viewer.
29%

BSDB


Biomolecule Stretching Database
29%

fPOP


fPOP (footprinting Pockets Of Proteins) is a database of the protein functional surfaces identified by shape analysis. In this relational database, we collected the spatial patterns of protein binding sites including both holo and apo forms from more ...
29%

TRIP


Protein-protein interactions for mammalian TRP channels
28%

TOPSAN


The Open Protein Structure Annotation Network
28%

SAHG


Structural Atlas of Human Genome
28%

VKCDB - Voltage-gated K+ Channel Database


Voltage-gated potassium channel database
28%

ElastoDB


Repository for well-characterized elastin sequences to facilitate its study. The database has since expanded to include other non-elastin sequences that share elastic properties.
28%

KUPS


Interacting and non-interacting protein pairs
28%

Alias


A tool for converting identifiers in which multiple aliases are used to refer to sequences. Also available as a stand-alone tool.
28%

PCRPi-DB


Presaging Critical Residues in Protein interface DataBase
28%

HMS-ICS


The Hyperlink Management System (HMS) automatically updates and maintains hyperlinks among major databases using various data IDs (e.g. HUGO Gene Symbols, IDs from PDB, UniProt). The ID Converter System (ICS) supports the conversion of data IDs using ...
28%

ProSplicer


Database which stores alternative splicing information generated from EST, mRNA and protein alignments with genomic sequence; text-based queries and graphical views of putative splice variants.
28%

EBI patent sequences


Non-redundant databases of patent DNA and protein sequences
27%

SPRITE


SPRITE is a protein structural motif database searching program. Users can upload a PDB file of a query protein structure, and SPRITE compares the input coordinates to a database of 3D side chain arrangements of sites and motifs using a graph theoret ...
27%

BISC


Binary SubComplexes in Proteins Database
27%

Protein Naming Utility


Repository of protein names and naming rules
27%

LRRsearch


An asynchronous server-based application for the prediction of leucine-rich repeat motifs and an integrative database of NOD-like receptors.
27%

PTGL


Protein Topology Graph library: Secondary structure-based protein topologies
27%

PhaSepDB


PhaSepDB is a novel database that provides a collection of phase separation related proteins manually curated from publications and public database. In addition to curated proteins, PhaSepDB also provides the researchers with molecular signatures th ...
26%

GPSDB


Collection of gene and protein names, organized by species that can be used to search for a given gene/protein name, retrieve all synonyms for this entity, and query Medline with a set of user-selected terms.
26%

ProCarbDB


a database of carbohydrate-binding proteins. An open access database ready to answer your sweetest queries. Carbohydrate-binding proteins play crucial roles across all viruses and organisms
26%

CDDB


Database for comprehensive results on the conformational dynamics of high molecular weight proteins and protein assemblies. Analysis is performed using a coarse-grained computational approach that is applied to most structures present in the electron ...
26%

PSC


Database of proteins classified by their functional surfaces.
26%

GlyMDB


Glycan Microarray Database and Analysis Toolset.
26%

Clotbase


A curated knowledgebase on the proteins that are involved in the blood coagulation pathway. It contains information on sequence, accession number, source, taxonomy, keywords, function, subcellular location, tissue specificity, associated diseases, mu ...
25%

Genus biomolecules


A database of genus characteristics of proteins and RNA. A database of genus characteristics. The Genus database collects information about topological structure and complexity of proteins and RNA chains, which is captured by the genus of a given c ...
25%

2DE-pattern


2DE-pattern is a database containing data on proteins/isoforms/proteoforms profiles.
25%

SISYPHUS


The SISYPHUS database contains manually curated multiple structural alignments constructed for a set of proteins with known three-dimensional structures that have revealed non-trivial structural relationships and whose structural similarity is ambigu ...
24%

TBDB


Stanford Tuberculosis Database
24%

IPI - International Protein Index


The International Protein Index (IPI) provides a top level guide to the main databases that describe the human, mouse and rat proteomes. IPI is built from the protein sequence data taken from the UniProt Knowledgebase, Ensembl and RefSeq databases, w ...
24%

Ligand-Gated Ion Channel Database


The Ligand-Gated Ion Channel database provides access to information about transmembrane proteins that exist under different conformations, with three primary subfamilies: the cys-loop superfamily, the ATP gated channels superfamily, and the glutamat ...
24%

iBeetle-Base


Phenotypes of a large scale RNAi screen in the red flour beetle Tribolium castaneum
24%

hu.MAP


A reference map data repository for human protein complexes, containing > 4,600 total complexes, > 7,700 proteins, and > 56,000 unique interactions, including thousands of confident protein interactions not identified by the original publications.
23%

HomoMINT


The repository is no longer available. >>>!!!<<<2019-02-19
23%

Harvard Medical School, Library of Integrated Network-Based Cellular Signatures Database


The Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.
23%

Oral Cancer Gene Database


Oral Cancer Gene Database is an initiative of the Advanced Centre for Treatment, Research and Education in Cancer, Navi Mumbai. The present database, version II, consists of 374 genes. It is developed as a user friendly site that would provide the s ...
23%

Yeast Resource Center Public Image Repository


The Yeast Resource Center Public Image Repository is a database of fluorescent microscopy images and their associated metadata/experimental parameters. The images depict the localization, co-localization and FRET (fluorescence energy transfer) of pr ...
23%

NCBI Assembly


A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.
23%

Colims


A lims system to automate and expedite proteomics data management, processing and analysis.
23%

DSSP secondary structure database


Secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB).
23%

ProteomeTools


A project that's aim is to translate the human proteome into molecular and digital tools for drug discovery, personalized medicine and life science research. It offers a repository of synthesized peptides and different tools for analyzing them.
23%

MEGADOCK-Web


It is an integrated database of high-throughput structure-based PPI predictions.
23%

Estonian Biocentre Free Data


A small genotype data repository containing data used in recent papers from the Estonian Biocentre. Most of the data pertains to human population genetics. PDF files of the papers are also freely available.
23%

3DBIONOTES


Web based application designed to integrate protein structure, protein sequence and protein annotations in a unique graphical environment. The current version of the application offers a unified, enriched and interactive view of EMDB volumes, PDB str ...
23%

FlyReactome


----<<<<< This repository is no longer available. This record is out dated >>>>>----- The aim of FlyReactome, based in the Department of Genetics, University of Cambridge, is to develop a curated repository for Drosophila melanogaster pathways ...
23%

PDBFINDER reformatted PDB files


This database holds for each PDB file a structured, search-engine-friendly-formatted entry that holds the data-items most likely needed for people search for certain types of PDB entries. It is not useful to search in atomic coordinates: it is meant ...
23%

COVID-19 Data Portal


The COVID-19 Data Portal was launched in April 2020 to bring together relevant datasets for sharing and analysis in an effort to accelerate coronavirus research. It enables researchers to upload, access and analyse COVID-19 related reference data and ...
23%

Clinical Proteomic Tumor Analysis Consortium Data Portal


The CPTAC Data Portal is the centralized repository for the dissemination of proteomic data collected by the Proteome Characterization Centers (PCCs) for the CPTAC program. The portal also hosts analyses of the mass spectrometry data (mapping of spec ...
23%

BIONDA - Biomarker Database


The BIONDA biomarker database provides structured information on all biomarker candidates published in PubMed articles. There is no limitation to any kind of diseases. To this end, PubMed article abstracts and renowned databases such as UniProt and H ...
23%

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