Negatome

Names
More detailed information about this field from each metasource.

Negatome
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:58.540987

negatome
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:58.540987

Other names: negatome

A database of non-interacting proteins

Webpage:

http://mips.helmholtz-muenchen.de/proj/ppi/negatome

Publications:

Publications
More detailed information about this field from each metasource.

The Negatome database: a reference set of non-interacting protein pairs
PMID: 19920129
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:58.540987

http://dx.doi.org/10.1093/nar/gkt1079
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

The Negatome database: a reference set of non-interacting protein pairs PubMed citations: 44.

44 articles citing: The Negatome database: a reference set of non-interacting protein pairs

NETME: on-the-fly knowledge network construction from biomedical literature. PMID:35013714
Getting to know each other: PPIMem, a novel approach for predicting transmembrane protein-protein complexes. PMID:34630938
Co-evolutionary landscape at the interface and non-interface regions of protein-protein interaction complexes. PMID:34285778
Classification and prediction of protein-protein interaction interface using machine learning algorithm. PMID:33469042
Interactomic affinity profiling by holdup assay: Acetylation and distal residues impact the PDZome-binding specificity of PTEN phosphatase. PMID:33382810
Amalgamation of 3D structure and sequence information for protein-protein interaction prediction. PMID:33154416
Using Random Forest Model Combined With Gabor Feature to Predict Protein-Protein Interaction From Protein Sequence. PMID:32655275
Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila. PMID:30247122
ProfPPIdb: Pairs of physical protein-protein interactions predicted for entire proteomes. PMID:30020956
Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation. PMID:29390084
Sequence-based prediction of protein protein interaction using a deep-learning algorithm. PMID:28545462
Non-interacting proteins may resemble interacting proteins: prevalence and implications. PMID:28084410
PPCM: Combing Multiple Classifiers to Improve Protein-Protein Interaction Prediction. PMID:26539460
Predicting protein-protein interactions from primary protein sequences using a novel multi-scale local feature representation scheme and the random forest. PMID:25946106
Algorithmic approaches to protein-protein interaction site prediction. PMID:25713596
Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy. PMID:25635527
Reconstruction of metabolic pathways by combining probabilistic graphical model-based and knowledge-based methods. PMID:25374614
Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data. PMID:25300367
Large-scale protein-protein interactions detection by integrating big biosensing data with computational model. PMID:25215285
The domain landscape of virus-host interactomes. PMID:24991570
Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators. PMID:24953126
Negative example selection for protein function prediction: the NoGO database. PMID:24922051
Template-based structure modeling of protein-protein interactions. PMID:24721449
Highly precise protein-protein interaction prediction based on consensus between template-based and de novo docking methods. PMID:24564962
The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities. PMID:24493033
Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information. PMID:24339765
Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis. PMID:24214996
The development of a universal in silico predictor of protein-protein interactions. PMID:23741499
Novel semantic similarity measure improves an integrative approach to predicting gene functional associations. PMID:23497449
Negated bio-events: analysis and identification. PMID:23323936
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. PMID:23071097
Proteome-wide prediction of protein-protein interactions from high-throughput data. PMID:22729399
Network compression as a quality measure for protein interaction networks. PMID:22719828
BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference. PMID:22689642
Putting into practice domain-linear motif interaction predictions for exploration of protein networks. PMID:22069443
Vavien: an algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks. PMID:22035267
Network-based prediction and analysis of HIV dependency factors. PMID:21966263
Revisiting the negative example sampling problem for predicting protein-protein interactions. PMID:21908540
DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization. PMID:21699738
Quantitative maps of genetic interactions in yeast - comparative evaluation and integrative analysis. PMID:21435228
QiSampler: evaluation of scoring schemes for high-throughput datasets using a repetitive sampling strategy on gold standards. PMID:21388526
DIMA 3.0: Domain Interaction Map. PMID:21097782
KUPS: constructing datasets of interacting and non-interacting protein pairs with associated attributions. PMID:20952400
Genome-wide scoring of positive and negative epistasis through decomposition of quantitative genetic interaction fitness matrices. PMID:20657656
http://dx.doi.org/10.1093/nar/gkt1079

Tags:

Tags
More detailed information about this field from each metasource.

metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein-protein interactions
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein interaction experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:58.540987

protein folds and structural domains
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:58.540987

protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:58.540987

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:58.540987

proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:58.540987

metabolic and signaling pathways protein-protein interactions protein interaction experiment protein folds and structural domains protein interaction molecular interactions, pathways and networks proteins

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DIMA

KUPS

CORUM

DOMINE

HitPredict

TRIP

ProtCID

DroID - Drosophila Interactions Database

Database of Interacting Proteins

Bacterial Protein Interaction Database

STRING

InterDom

3D interacting domains

Human Protein-Protein Interaction rEference

AtPID

PDZBase

Molecular INTeraction database

PAIR

Dockground

GWIDD