Ensembl Genomes
Names
More detailed information about this field from each metasource.
Ensembl Genomes
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.364802
e!EnsemblGenomes
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
ensembl_genomes
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.364802
Names
More detailed information about this field from each metasource.
Ensembl Genomes
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.364802
e!EnsemblGenomes
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
ensembl_genomes
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.364802
Other names: e!EnsemblGenomes, ensembl_genomes
Names
More detailed information about this field from each metasource.
Ensembl Genomes
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.364802
e!EnsemblGenomes
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
ensembl_genomes
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.364802
The Ensembl genome annotation system, developed jointly by EMBL-EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy.
Description
More detailed information about this field from each metasource.
The Ensembl genome annotation system, developed jointly by EMBL-EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy.
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the Ensembl project (http://www.ensembl.org). Together, the two resources provide a consistent set of programmatic and interactive interfaces to a rich range of data including genome sequence, gene models, transcript sequence, genetic variation, and comparative analysis. This paper provides an update to the previous publications about the resource, with a focus on recent developments and expansions. These include the incorporation of almost 20 000 additional genome sequences and over 35 000 tracks of RNA-Seq data, which have been aligned to genomic sequence and made available for visualization. Other advances since 2015 include the release of the database in Resource Description Framework (RDF) format, a large increase in community-derived curation, a new high-performance protein sequence search, additional cross-references, improved annotation of non-protein-coding genes, and the launch of pre-release and archival sites. Collectively, these changes are part of a continuing response to the increasing quantity of publicly-available genome-scale data, and the consequent need to archive, integrate, annotate and disseminate these using automated, scalable methods.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy. In each domain, we aim to bring the integrative power of Ensembl tools for comparative analysis, data mining and visualisation across genomes of scientific interest, working in collaboration with scientific communities to improve and deepen genome annotation and interpretation.
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
A system for the annotation, analysis and display of vertebrate genomes and for bacteria, protists, fungi, plants and invertebrate metazoa.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.364802
Webpage:
https://ensemblgenomes.org/Webpage
More detailed information about this field from each metasource.
https://ensemblgenomes.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://www.ensemblgenomes.org
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://ensemblgenomes.org/
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
http://www.ensemblgenomes.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.364802
Licence:
Name: EMBL-EBI Terms of UseLicence name
More detailed information about this field from each metasource.
EMBL-EBI Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
other
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://www.ebi.ac.uk/about/terms-of-use
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://www.ensembl.org/info/about/legal/image_reuse.html
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
Ensembl Genomes 2016: more genomes, more complexity
PMID: 26578574
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Ensembl Genomes 2020-enabling non-vertebrate genomic research
PMID: 31598706
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/nar/gkx1011
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://dx.doi.org/10.1093/nar/gkv1209
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.364802
Publications
More detailed information about this field from each metasource.
Ensembl Genomes 2016: more genomes, more complexity
PMID: 26578574
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Ensembl Genomes 2020-enabling non-vertebrate genomic research
PMID: 31598706
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/nar/gkx1011
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://dx.doi.org/10.1093/nar/gkv1209
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.364802
-
Ensembl Genomes 2016: more genomes, more complexity
PubMed citations: 261.
261 articles citing: Ensembl Genomes 2016: more genomes, more complexity
Comprehensive analysis of the expression, prognostic significance, and function of FAM83 family members in breast cancer. PMID:35650627
Allelic Variation in Zmfatb Gene Defines Variability for Fatty Acids Composition Among Diverse Maize Genotypes. PMID:35600823
Isolation and Molecular Characterisation of TtDro1A and TtDro1B Genes from Triticum turgidum Subspecies durum and turgidum, Study of Their Influences on Seedling Root Angles. PMID:35336704
Reduced reproductive success is associated with selective constraint on human genes. PMID:35322230
Identification and characterization of stress responsive homeodomain leucine zipper transcription factors in Medicago truncatula. PMID:35118569
Analysis of mRNA-derived siRNAs in mutants of mRNA maturation and surveillance pathways in Arabidopsis thaliana. PMID:35087200
A cascade of bHLH-regulated pathways programs maize anther development. PMID:35018475
Arabidopsi s Spliceosome Factor SmD3 Modulates Immunity to Pseudomonas syringae Infection. PMID:34925413
Identification of WRKY transcription factors responding to abiotic stresses in Brassica napus L. PMID:34837557
Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors. PMID:34792170
Mitochondrial phosphate transporter and methyltransferase genes contribute to Fusarium head blight Type II disease resistance and grain development in wheat. PMID:34648604
Nasal Immunization With Small Molecule Mast Cell Activators Enhance Immunity to Co-Administered Subunit Immunogens. PMID:34566991
Comparative analysis of RNA enrichment methods for preparation of Cryptococcus neoformans RNA sequencing libraries. PMID:34518880
lncExplore: a database of pan-cancer analysis and systematic functional annotation for lncRNAs from RNA-sequencing data. PMID:34464437
Signature of prognostic epithelial-mesenchymal transition related long noncoding RNAs (ERLs) in hepatocellular carcinoma. PMID:34397721
Localised expression of OsIAA29 suggests a key role for auxin in regulating development of the dorsal aleurone of early rice grains. PMID:34324072
Allelic variation in sugary1 gene affecting kernel sweetness among diverse-mutant and -wild-type maize inbreds. PMID:34159441
Differential responses of anthers of stress tolerant and sensitive wheat cultivars to high temperature stress. PMID:34131818
A rationally designed oral vaccine induces immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants. PMID:34045711
Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias. PMID:33871580
Longitudinal study of the scalp microbiome suggests coconut oil to enrich healthy scalp commensals. PMID:33790324
Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains. PMID:33687498
Combination of Ginsenosides Rb2 and Rg3 Promotes Angiogenic Phenotype of Human Endothelial Cells via PI3K/Akt and MAPK/ERK Pathways. PMID:33643049
Global Analysis of Gene Expression Profiles Provides Novel Insights into the Development and Evolution of the Large Crustacean Eriocheir sinensis. PMID:33346084
Identification of New Leaf Rust Resistance Loci in Wheat and Wild Relatives by Array-Based SNP Genotyping and Association Genetics. PMID:33304363
Translational adaptation to heat stress is mediated by RNA 5-methylcytosine in Caenorhabditis elegans. PMID:33283887
Algorithms for ribosome traffic engineering and their potential in improving host cells' titer and growth rate. PMID:33273552
A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies. PMID:33219668
Comparison of DNA Methylation Profiles of Hemostatic Genes between Liver Tissue and Peripheral Blood within Individuals. PMID:33202445
Calculating the most likely intron splicing orders in S. pombe, fruit fly, Arabidopsis thaliana, and humans. PMID:33099301
No Evidence That Homologs of Key Circadian Clock Genes Direct Circadian Programs of Development or mRNA Abundance in Verticillium dahliae. PMID:33013740
Transcriptomic and Proteomic Insights into Amborella trichopoda Male Gametophyte Functions. PMID:32989009
Genome-wide identification and expression analysis of the calmodulin-binding transcription activator (CAMTA) gene family in wheat (Triticum aestivum L.). PMID:32928120
Diversity in the intrinsic apoptosis pathway of nematodes. PMID:32859965
Wheat Disease Resistance Genes and Their Diversification Through Integrated Domain Fusions. PMID:32849852
miR155 regulation of behavior, neuropathology, and cortical transcriptomics in Alzheimer's disease. PMID:32666270
The regulatory landscape of early maize inflorescence development. PMID:32631399
Using AnABlast for intergenic sORF prediction in the Caenorhabditis elegans genome. PMID:32614398
Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize. PMID:32518237
Short- and Long-Term Transcriptomic Responses of Escherichia coli to Biocides: a Systems Analysis. PMID:32385082
Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women. PMID:32111240
Diversity, structure, and synteny of the cutinase gene of Colletotrichum species. PMID:32076525
Metabolic Labeling of RNAs Uncovers Hidden Features and Dynamics of the Arabidopsis Transcriptome. PMID:32060173
Organizing genome engineering for the gigabase scale. PMID:32019919
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets. PMID:31956905
The Use of PTI-Marker Genes to Identify Novel Compounds that Establish Induced Resistance in Rice. PMID:31906566
PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets. PMID:31866958
Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.). PMID:31803533
Genome-wide identification and expression analysis of the StSWEET family genes in potato (Solanum tuberosum L.). PMID:31782074
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes. PMID:31647096
In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions. PMID:31640713
Contribution of retrotransposition to developmental disorders. PMID:31604926
Cross-Kingdom Analysis of Diversity, Evolutionary History, and Site Selection within the Eukaryotic Macrophage Migration Inhibitory Factor Superfamily. PMID:31554205
Production of a complete set of wheat-barley group-7 chromosome recombinants with increased grain β-glucan content. PMID:31535163
Architecture of Parallel Adaptation in Ten Lacustrine Threespine Stickleback Populations from the White Sea Area. PMID:31406984
Multilayered Tuning of Dosage Compensation and Z-Chromosome Masculinization in the Wood White (Leptidea sinapis) Butterfly. PMID:31400207
Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers. PMID:31339877
Conditional expression explains molecular evolution of social genes in a microbe. PMID:31337766
Parent-of-origin-specific allelic expression in the human placenta is limited to established imprinted loci and it is stably maintained across pregnancy. PMID:31242935
Unprecedented reorganization of holocentric chromosomes provides insights into the enigma of lepidopteran chromosome evolution. PMID:31206013
Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts. PMID:31193391
Subcellular Compartments Interplay for Carbon and Nitrogen Allocation in Chromera velia and Vitrella brassicaformis. PMID:31192348
Recent trends in molecular diagnostics of yeast infections: from PCR to NGS. PMID:31158289
In silico prediction and characterisation of secondary metabolite clusters in the plant pathogenic fungus Verticillium dahliae. PMID:31004487
'Why genes in pieces?'-revisited. PMID:30997511
Identification of conserved miRNA molecules in einkorn wheat (Triticum monococcum subsp. monococcum) by using small RNA sequencing analysis. PMID:30983871
Genome-wide Analysis of bZIP Transcription Factors in wheat and Functional Characterization of a TabZIP under Abiotic Stress. PMID:30872683
LINE-2 transposable elements are a source of functional human microRNAs and target sites. PMID:30865625
Codon Usage Differences among Genes Expressed in Different Tissues of Drosophila melanogaster. PMID:30859203
Halloween genes in panarthropods and the evolution of the early moulting pathway in Ecdysozoa. PMID:30839709
3D Cellular Architecture Affects MicroRNA and Protein Cargo of Extracellular Vesicles. PMID:30828519
SuCComBase: a manually curated repository of plant sulfur-containing compounds. PMID:30793170
FairBase: a comprehensive database of fungal A-to-I RNA editing. PMID:30788499
Comparative analysis of seven types of superoxide dismutases for their ability to respond to oxidative stress in Bombyx mori. PMID:30778096
Evolution and Identification of the WRKY Gene Family in Quinoa (Chenopodium quinoa). PMID:30754717
Diff isomiRs: Large-scale detection of differential isomiRs for understanding non-coding regulated stress omics in plants. PMID:30723229
Mapping global and local coevolution across 600 species to identify novel homologous recombination repair genes. PMID:30718334
CircFunBase: a database for functional circular RNAs. PMID:30715276
Transcriptomics of manually isolated Amborella trichopoda egg apparatus cells. PMID:30707279
Development of Decreased-Gluten Wheat Enabled by Determination of the Genetic Basis of lys3a Barley. PMID:30696748
Predicting the optimal growth temperatures of prokaryotes using only genome derived features. PMID:30689741
MYORG is associated with recessive primary familial brain calcification. PMID:30656188
Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells. PMID:30587128
Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis. PMID:30559359
Proteomics Analysis Reveals That Caspase-Like and Metacaspase-Like Activities Are Dispensable for Activation of Proteases Involved in Early Response to Biotic Stress in Triticum aestivum L. PMID:30544979
RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata. PMID:30409135
Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, and Telomeric Amplification. PMID:30401775
InterPro in 2019: improving coverage, classification and access to protein sequence annotations. PMID:30398656
RNAcentral: a hub of information for non-coding RNA sequences. PMID:30395267
Genetic and transcriptional variations in NRAMP-2 and OPAQUE1 genes are associated with salt stress response in wheat. PMID:30392081
Species-Wide Variation in Shoot Nitrate Concentration, and Genetic Loci Controlling Nitrate, Phosphorus and Potassium Accumulation in Brassica napus L. PMID:30386356
Co-Evolution of Intrinsically Disordered Proteins with Folded Partners Witnessed by Evolutionary Couplings. PMID:30366362
Comparison of Healthy and Dandruff Scalp Microbiome Reveals the Role of Commensals in Scalp Health. PMID:30338244
Genome-Wide Identification and Transcriptional Regulation of Aquaporin Genes in Bread Wheat (Triticum aestivum L.) under Water Stress. PMID:30326657
Analysis of impact metrics for the Protein Data Bank. PMID:30325351
The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing. PMID:30309899
Molecular Background of Pi Deficiency-Induced Root Hair Growth in Brassica carinata - A Fasciclin-Like Arabinogalactan Protein Is Involved. PMID:30283481
Exploring transcription factors reveals crucial members and regulatory networks involved in different abiotic stresses in Brassica napus L. PMID:30231862
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms. PMID:30202060
Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. PMID:30202022
Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification. PMID:30180895
Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes. PMID:30152752
Developmental Constraints on Genome Evolution in Four Bilaterian Model Species. PMID:30137380
Synchronous birth is a dominant pattern in receptor-ligand evolution. PMID:30107779
Divergent Hemogen genes of teleosts and mammals share conserved roles in erythropoiesis: analysis using transgenic and mutant zebrafish. PMID:30097520
CD38 as Immunotherapeutic Target in Light Chain Amyloidosis and Multiple Myeloma-Association With Molecular Entities, Risk, Survival, and Mechanisms of Upfront Resistance. PMID:30079070
Osmotic stress enhances suberization of apoplastic barriers in barley seminal roots: analysis of chemical, transcriptomic and physiological responses. PMID:30055115
IgA regulates the composition and metabolic function of gut microbiota by promoting symbiosis between bacteria. PMID:30042191
Staurosporine Increases Lentiviral Vector Transduction Efficiency of Human Hematopoietic Stem and Progenitor Cells. PMID:30038935
PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules. PMID:30007348
A Pathogen-Responsive Leucine Rich Receptor Like Kinase Contributes to Fusarium Resistance in Cereals. PMID:29997638
Spatio-temporal expression dynamics differ between homologues of flowering time genes in the allopolyploid Brassica napus. PMID:29989238
Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus. PMID:29937276
Annotation and profiling of barley GLYCOGEN SYNTHASE3/Shaggy-like genes indicated shift in organ-preferential expression. PMID:29920545
Purifying and positive selection in the evolution of stop codons. PMID:29915293
Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica. PMID:29910077
Energetic evolution of cellular Transportomes. PMID:29848286
Evidence for horizontal gene transfer and separation of effector recognition from effector function revealed by analysis of effector genes shared between cape gooseberry- and tomato-infecting formae speciales of Fusarium oxysporum. PMID:29786161
Breast cancer associated germline structural variants harboring small noncoding RNAs impact post-transcriptional gene regulation. PMID:29760470
A broadly conserved NERD genetically interacts with the exocyst to affect root growth and cell expansion. PMID:29722827
Automatic identification of optimal marker genes for phenotypic and taxonomic groups of microorganisms. PMID:29718935
Transcriptional Profiling of Somatostatin Interneurons in the Spinal Dorsal Horn. PMID:29717160
Identification of two different chemosensory pathways in representatives of the genus Halomonas. PMID:29669514
Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa. PMID:29642851
Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.). PMID:29626084
New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus). PMID:29618317
Evolutionary Interplay between Symbiotic Relationships and Patterns of Signal Peptide Gain and Loss. PMID:29608732
Brain-Derived Neurotrophic Factor Elevates Activating Transcription Factor 4 (ATF4) in Neurons and Promotes ATF4-Dependent Induction of Sesn2. PMID:29599707
Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms. PMID:29556065
Analysis of Parent-of-Origin Effects on the X Chromosome in Asian and European Orofacial Cleft Triads Identifies Associations with DMD, FGF13, EGFL6, and Additional Loci at Xp22.2. PMID:29520293
A new allele of the Brachytic2 gene in maize can efficiently modify plant architecture. PMID:29472693
Synopsis of the SOFL Plant-Specific Gene Family. PMID:29467189
A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity. PMID:29463659
Pathogen Trojan Horse Delivers Bioactive Host Protein to Alter Maize Anther Cell Behavior in Situ. PMID:29449414
Waggawagga-CLI: A command-line tool for predicting stable single α-helices (SAH-domains), and the SAH-domain distribution across eukaryotes. PMID:29444145
GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. PMID:29437990
Characterization of OglDREB2A gene from African rice (Oryza glaberrima), comparative analysis and its transcriptional regulation under salinity stress. PMID:29430353
Genome-Wide Identification and Expression Analysis of the HD-Zip Gene Family in Wheat (Triticum aestivum L.). PMID:29389910
Widespread signatures of selection for secreted peptidases in a fungal plant pathogen. PMID:29368587
Mutations in THAP1/DYT6 reveal that diverse dystonia genes disrupt similar neuronal pathways and functions. PMID:29364887
Functional role of the type 1 pilus rod structure in mediating host-pathogen interactions. PMID:29345620
Growth is required for perception of water availability to pattern root branches in plants. PMID:29317538
Differential expression of NBS-LRR-encoding genes in the root transcriptomes of two Solanum phureja genotypes with contrasting resistance to Globodera rostochiensis. PMID:29297325
The coding and noncoding transcriptome of Neurospora crassa. PMID:29258423
Long disordered regions of the C-terminal domain of Abelson tyrosine kinase have specific and additive functions in regulation and axon localization. PMID:29232713
Exploring digenic inheritance in arrhythmogenic cardiomyopathy. PMID:29221435
RetrogeneDB-a database of plant and animal retrocopies. PMID:29220443
Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids. PMID:29196538
The fungal snoRNAome. PMID:29196413
Identification of Candidate Genes for Calcium and Magnesium Accumulation in Brassica napus L. by Association Genetics. PMID:29187860
Comparative Genomics of Pathogenic and Nonpathogenic Beetle-Vectored Fungi in the Genus Geosmithia. PMID:29186370
Horizontal acquisition of a hypoxia-responsive molybdenum cofactor biosynthesis pathway contributed to Mycobacterium tuberculosis pathoadaptation. PMID:29176894
Expression Atlas: gene and protein expression across multiple studies and organisms. PMID:29165655
Gramene 2018: unifying comparative genomics and pathway resources for plant research. PMID:29165610
Fundamental constraints in synchronous muscle limit superfast motor control in vertebrates. PMID:29165242
Metabolic Pathway Assignment of Plant Genes based on Phylogenetic Profiling-A Feasibility Study. PMID:29163570
Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts. PMID:29152586
Identification and expression profiling of Pht1 phosphate transporters in wheat in controlled environments and in the field. PMID:29148171
Constraints on lateral gene transfer in promoting fimbrial usher protein diversity and function. PMID:29142104
Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles. PMID:29132315
Development of a complete set of wheat-barley group-7 Robertsonian translocation chromosomes conferring an increased content of β-glucan. PMID:29124282
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. PMID:29112718
Prostaglandin E2 Increases Lentiviral Vector Transduction Efficiency of Adult Human Hematopoietic Stem and Progenitor Cells. PMID:29102562
The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research. PMID:29092928
Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing. PMID:29087490
POTAGE: A Visualisation Tool for Speeding up Gene Discovery in Wheat. PMID:29085014
Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation. PMID:29084582
Transposable elements generate population-specific insertional patterns and allelic variation in genes of wild emmer wheat (Triticum turgidum ssp. dicoccoides). PMID:29078757
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. PMID:29069403
A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action. PMID:29036168
Identification of cis-regulatory sequences reveals potential participation of lola and Deaf1 transcription factors in Anopheles gambiae innate immune response. PMID:29028826
RNA sequencing identifies novel non-coding RNA and exon-specific effects associated with cigarette smoking. PMID:28985737
Probing the origins of metazoan formin diversity: Evidence for evolutionary relationships between metazoan and non-metazoan formin subtypes. PMID:28982189
Unlocking new alleles for leaf rust resistance in the Vavilov wheat collection. PMID:28980023
dbCoRC: a database of core transcriptional regulatory circuitries modeled by H3K27ac ChIP-seq signals. PMID:28977473
Visualizing and comparing circular genomes using the CGView family of tools. PMID:28968859
MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. PMID:28968784
Adenine Enrichment at the Fourth CDS Residue in Bacterial Genes Is Consistent with Error Proofing for +1 Frameshifts. PMID:28961919
The eBioKit, a stand-alone educational platform for bioinformatics. PMID:28910280
Prokaryotic and Highly-Repetitive WD40 Proteins: A Systematic Study. PMID:28878378
Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips. PMID:28842533
Necroptosis activation in Alzheimer's disease. PMID:28758999
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize. PMID:28732548
Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction. PMID:28651538
GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species. PMID:28605774
The genetics revolution in rheumatology: large scale genomic arrays and genetic mapping. PMID:28569263
Comparative transcriptomic analysis indicates genes associated with local and systemic resistance to Colletotrichum graminicola in maize. PMID:28559543
APMAP interacts with lysyl oxidase-like proteins, and disruption of Apmap leads to beneficial visceral adipose tissue expansion. PMID:28559441
The common transcriptional subnetworks of the grape berry skin in the late stages of ripening. PMID:28558655
Evolutionary Footprints Reveal Insights into Plant MicroRNA Biogenesis. PMID:28550151
GenProBiS: web server for mapping of sequence variants to protein binding sites. PMID:28498966
The PhytoClust tool for metabolic gene clusters discovery in plant genomes. PMID:28486689
WebGIVI: a web-based gene enrichment analysis and visualization tool. PMID:28472919
The EBI search engine: EBI search as a service-making biological data accessible for all. PMID:28472374
Optimized approach for Ion Proton RNA sequencing reveals details of RNA splicing and editing features of the transcriptome. PMID:28459821
On the Molecular Evolution of Leptin, Leptin Receptor, and Endospanin. PMID:28443063
Programmatic access to bioinformatics tools from EMBL-EBI update: 2017. PMID:28431173
Comparative transcriptomics of mountain pine beetle pheromone-biosynthetic tissues and functional analysis of CYP6DE3. PMID:28427347
Evolutionary Analysis of Snf1-Related Protein Kinase2 (SnRK2) and Calcium Sensor (SCS) Gene Lineages, and Dimerization of Rice Homologs, Suggest Deep Biochemical Conservation across Angiosperms. PMID:28424709
A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants. PMID:28408660
Molecular evolutionary mechanisms driving functional diversification of α-glucosidase in Lepidoptera. PMID:28401928
Whole-transcriptome RNA-seq, gene set enrichment pathway analysis, and exon coverage analysis of two plastid RNA editing mutants. PMID:28387567
Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery. PMID:28385710
Two maize Kip-related proteins differentially interact with, inhibit and are phosphorylated by cyclin D-cyclin-dependent kinase complexes. PMID:28369656
Genome sequence of a rice pest, the white-backed planthopper (Sogatella furcifera). PMID:28369349
Mapping of SnTox3-Snn3 as a major determinant of field susceptibility to Septoria nodorum leaf blotch in the SHA3/CBRD × Naxos population. PMID:28365817
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. PMID:28365736
Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure. PMID:28341699
Pseudoalignment for metagenomic read assignment. PMID:28334086
Natural haplotypes of FLM non-coding sequences fine-tune flowering time in ambient spring temperatures in Arabidopsis. PMID:28294941
Light Modulates Metabolic Pathways and Other Novel Physiological Traits in the Human Pathogen Acinetobacter baumannii. PMID:28289081
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants. PMID:28228535
DNA methylation as a putative mechanism for reduced dendritic spine density in the superior temporal gyrus of subjects with schizophrenia. PMID:28195572
Genomes of Multicellular Organisms Have Evolved to Attract Nucleosomes to Promoter Regions. PMID:28131316
Using Network Extracted Ontologies to Identify Novel Genes with Roles in Appressorium Development in the Rice Blast Fungus Magnaporthe oryzae. PMID:28106722
YeATSAM analysis of the walnut and chickpea transcriptome reveals key genes undetected by current annotation tools. PMID:28105312
Identification of functional enolase genes of the silkworm Bombyx mori from public databases with a combination of dry and wet bench processes. PMID:28086791
Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration. PMID:28086749
Evolution of protein N-glycosylation process in Golgi apparatus which shapes diversity of protein N-glycan structures in plants, animals and fungi. PMID:28074929
Domestication of rice has reduced the occurrence of transposable elements within gene coding regions. PMID:28068923
Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.). PMID:28056783
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes. PMID:28053165
Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data. PMID:28043950
Cell Cycle Constraints and Environmental Control of Local DNA Hypomethylation in α-Proteobacteria. PMID:27997543
PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs). PMID:27936097
Pseudogenes and Their Genome-Wide Prediction in Plants. PMID:27916797
Applications and Limitations of Mouse Models for Understanding Human Atherosclerosis. PMID:27916529
InterPro in 2017-beyond protein family and domain annotations. PMID:27899635
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. PMID:27899580
The RhoB small GTPase in physiology and disease. PMID:27875099
Diversification of the kinetic properties of yeast NADP-glutamate-dehydrogenase isozymes proceeds independently of their evolutionary origin. PMID:27864882
Genomic and phylogenetic evidence of VIPER retrotransposon domestication in trypanosomatids. PMID:27849219
RNAcentral: a comprehensive database of non-coding RNA sequences. PMID:27794554
Computational pan-genomics: status, promises and challenges. PMID:27769991
PMDBase: a database for studying microsatellite DNA and marker development in plants. PMID:27733507
Gene Overexpression Resources in Cereals for Functional Genomics and Discovery of Useful Genes. PMID:27708649
Revisiting the Phylogeny of the Animal Formins: Two New Subtypes, Relationships with Multiple Wing Hairs Proteins, and a Lost Human Formin. PMID:27695129
High-Resolution Identification of Specificity Determining Positions in the LacI Protein Family Using Ensembles of Sub-Sampled Alignments. PMID:27681038
Sex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual Differentiation. PMID:27677173
Profiling of Small Nucleolar RNAs by Next Generation Sequencing: Potential New Players for Breast Cancer Prognosis. PMID:27631501
The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing. PMID:27624757
Functional Annotations of Paralogs: A Blessing and a Curse. PMID:27618105
Evolving serodiagnostics by rationally designed peptide arrays: the Burkholderia paradigm in Cystic Fibrosis. PMID:27615705
Genome-wide profiling of transfer RNAs and their role as novel prognostic markers for breast cancer. PMID:27604545
Domestication history and geographical adaptation inferred from a SNP map of African rice. PMID:27500524
Flexible selection of diversified Na(+)/K(+)-ATPase α-subunit isoforms for osmoregulation in teleosts. PMID:27489726
Structure and function of the bacterial decapping enzyme NudC. PMID:27428510
Splice Sites Seldom Slide: Intron Evolution in Oomycetes. PMID:27412607
Computational Identification of the Paralogs and Orthologs of Human Cytochrome P450 Superfamily and the Implication in Drug Discovery. PMID:27367670
Missense splice variant (g.20746A>G, p.Ile183Val) of interferon gamma receptor 1 (IFNGR1) coincidental with mycobacterial osteomyelitis - a screen of osteoarticular lesions. PMID:27356097
Genome wide analysis of protein production load in Trichoderma reesei. PMID:27354857
CerealsDB 3.0: expansion of resources and data integration. PMID:27342803
Model organism databases: essential resources that need the support of both funders and users. PMID:27334346
The host-pathogen interaction between wheat and yellow rust induces temporally coordinated waves of gene expression. PMID:27207100
Synteny Portal: a web-based application portal for synteny block analysis. PMID:27154270
Parallel computation of genome-scale RNA secondary structure to detect structural constraints on human genome. PMID:27153986
Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. PMID:27142109
g:Profiler-a web server for functional interpretation of gene lists (2016 update). PMID:27098042
A quick guide to CRISPR sgRNA design tools. PMID:26745836
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. PMID:26740669
The European Bioinformatics Institute in 2016: Data growth and integration. PMID:26673705 -
Ensembl Genomes 2020-enabling non-vertebrate genomic research
PubMed citations: 167.
167 articles citing: Ensembl Genomes 2020-enabling non-vertebrate genomic research
Phylotranscriptomics Illuminates the Placement of Whole Genome Duplications and Gene Retention in Ferns. PMID:35909764
Contrasting Water Withholding Responses of Young Maize Plants Reveal Link Between Lipid Peroxidation and Osmotic Regulation Corroborated by Genetic Analysis. PMID:35873985
Seed DNA damage responses promote germination and growth in Arabidopsis thaliana. PMID:35858436
First Plant Cell Atlas symposium report. PMID:35774620
Transcription factor retention through multiple polyploidization steps in wheat. PMID:35748743
Intron-derived small RNAs for silencing viral RNAs in mosquito cells. PMID:35737714
Functional Divergence of the bag-of-marbles Gene in the Drosophila melanogaster Species Group. PMID:35714266
Developing a bioinformatics pipeline for comparative protein classification analysis. PMID:35668373
Intron losses and gains in the nematodes. PMID:35659725
A comparative meta-proteomic pipeline for the identification of plasmodesmata proteins and regulatory conditions in diverse plant species. PMID:35655273
Cost-Effective Transcriptome-Wide Profiling of Circular RNAs by the Improved-tdMDA-NGS Method. PMID:35647023
Genome Replication Is Associated With Release of Immunogenic DNA Waste. PMID:35634291
GrainGenes: a data-rich repository for small grains genetics and genomics. PMID:35616118
TCMPG: an integrative database for traditional Chinese medicine plant genomes. PMID:35591924
The Triticum ispahanicum elongated glume locus P2 maps to chromosome 6A and is associated with the ectopic expression of SVP-A1. PMID:35583655
Spatial correlation statistics enable transcriptome-wide characterization of RNA structure binding. PMID:35474897
A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans. PMID:35463453
An interolog-based barley interactome as an integration framework for immune signaling. PMID:35435213
Comparative Transcriptome Analysis between Two Potato Cultivars in Tuber Induction to Reveal Associated Genes with Anthocyanin Accumulation. PMID:35409041
Molecular Characterization, Evolutionary Analysis, and Expression Profiling of BOR Genes in Important Cereals. PMID:35406892
Exploring Genomic Variations in Nematode-Resistant Mutant Rice Lines. PMID:35401589
Jasmonates and Histone deacetylase 6 activate Arabidopsis genome-wide histone acetylation and methylation during the early acute stress response. PMID:35399062
JaponicusDB: rapid deployment of a model organism database for an emerging model species. PMID:35380656
Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62. PMID:35338132
Role of Wheat Phosphorus Starvation Tolerance 1 Genes in Phosphorus Acquisition and Root Architecture. PMID:35328041
BmPMFBP1 regulates the development of eupyrene sperm in the silkworm, Bombyx mori. PMID:35312700
The Identity of the Constriction Region of the Ribosomal Exit Tunnel Is Important to Maintain Gene Expression in Escherichia coli. PMID:35311583
Mining for New Sources of Resistance to Powdery Mildew in Genetic Resources of Winter Wheat. PMID:35300015
Phylogenetic analysis of forkhead transcription factors in the Panarthropoda. PMID:35230523
High-LD SNP markers exhibiting pleiotropic effects on salt tolerance at germination and seedlings stages in spring wheat. PMID:35217965
Reactive Oxygen Species Differentially Modulate the Metabolic and Transcriptomic Response of Endothelial Cells. PMID:35204316
The MoPah1 phosphatidate phosphatase is involved in lipid metabolism, development, and pathogenesis in Magnaporthe oryzae. PMID:35191164
RicENN: Prediction of Rice Enhancers with Neural Network Based on DNA Sequences. PMID:35190950
Developmental alterations in DNA methylation during gametogenesis from primordial germ cells to sperm. PMID:35146397
Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin. PMID:35100403
Florigen and its homologs of FT/CETS/PEBP/RKIP/YbhB family may be the enzymes of small molecule metabolism: review of the evidence. PMID:35086479
Rubiscosome gene expression is balanced across the hexaploid wheat genome. PMID:35083631
Genome-wide survey of the dehydrin genes in bread wheat (Triticum aestivum L.) and its relatives: identification, evolution and expression profiling under various abiotic stresses. PMID:35065618
how_are_we_stranded_here: quick determination of RNA-Seq strandedness. PMID:35065593
CerealsDB: A Whistle-Stop Tour of an Open Access SNP Resource. PMID:35037203
Scripting Analyses of Genomes in Ensembl Plants. PMID:35037199
SorghumBase: a web-based portal for sorghum genetic information and community advancement. PMID:35015132
Analyses of Lysin-motif Receptor-like Kinase (LysM-RLK) Gene Family in Allotetraploid Brassica napus L. and Its Progenitor Species: An In Silico Study. PMID:35011598
A single nucleotide deletion in the third exon of FT-D1 increases the spikelet number and delays heading date in wheat (Triticum aestivum L.). PMID:34978137
Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model Brachypodium Grasses. PMID:34961135
Metagenomics Analysis of the Wheat Virome Identifies Novel Plant and Fungal-Associated Viral Sequences. PMID:34960726
Brassinazole Resistant 1 Activity Is Organ-Specific and Genotype-Dependent in Barley Seedlings. PMID:34948366
Geographical Origin Does Not Modulate Pathogenicity or Response to Climatic Variables of Fusarium oxysporum Associated with Vascular Wilt on Asparagus. PMID:34947038
Common Features in lncRNA Annotation and Classification: A Survey. PMID:34940758
GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells. PMID:34928370
A comprehensive transcription factor and DNA-binding motif resource for the construction of gene regulatory networks in Botrytis cinerea and Trichoderma atroviride. PMID:34900134
Trend, population structure, and trait mapping from 15 years of national varietal trials of UK winter wheat. PMID:34897454
No one tool to rule them all: Prokaryotic gene prediction tool annotations are highly dependent on the organism of study. PMID:34875010
VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms. PMID:34864248
Single-nucleus transcriptomes reveal evolutionary and functional properties of cell types in the Drosophila accessory gland. PMID:34849871
Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes. PMID:34830231
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. PMID:34791415
PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions. PMID:34788826
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments. PMID:34751401
Temporal and spatial transcriptomic dynamics across brain development in Xenopus laevis tadpoles. PMID:34751375
MetazExp: a database for gene expression and alternative splicing profiles and their analyses based on 53 615 public RNA-seq samples in 72 metazoan species. PMID:34718719
Lineage-Specific Genes and Family Expansions in Dictyostelid Genomes Display Expression Bias and Evolutionary Diversification during Development. PMID:34681022
Minimalistic mycoplasmas harbor different functional toxin-antitoxin systems. PMID:34673769
Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning. PMID:34645826
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. PMID:34634797
Evolutionary Implications of the RNA N6-Methyladenosine Methylome in Plants. PMID:34633447
A systems approach using Diversity Outbred mice distinguishes the cardiovascular effects and genetics of circulating GDF11 from those of its homolog, myostatin. PMID:34510201
Accuracy of GEBV of sires based on pooled allele frequency of their progeny. PMID:34510188
A functionally divergent intrinsically disordered region underlying the conservation of stochastic signaling. PMID:34506483
Vision, challenges and opportunities for a Plant Cell Atlas. PMID:34491200
Adverse Maternal Environment and Postweaning Western Diet Alter Hepatic CD36 Expression and Methylation Concurrently with Nonalcoholic Fatty Liver Disease in Mouse Offspring. PMID:34486661
Predicting host dependency factors of pathogens in Drosophila melanogaster using machine learning. PMID:34471501
Will Plant Genome Editing Play a Decisive Role in "Quantum-Leap" Improvements in Crop Yield to Feed an Increasing Global Human Population? PMID:34451712
Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides. PMID:34436291
Comprehensive in silico Characterization of Universal Stress Proteins in Rice (Oryza sativa L.) With Insight Into Their Stress-Specific Transcriptional Modulation. PMID:34394169
'Whole Organism', Systems Biology, and Top-Down Criteria for Evaluating Scenarios for the Origin of Life. PMID:34357062
mRNA Inventory of Extracellular Vesicles from Ustilago maydis. PMID:34356940
Chia (Salvia hispanica) Gene Expression Atlas Elucidates Dynamic Spatio-Temporal Changes Associated With Plant Growth and Development. PMID:34354718
Genome-wide analysis of HECT E3 ubiquitin ligase gene family in Solanum lycopersicum. PMID:34354159
Transcriptome Response to Cadmium Exposure in Barley (Hordeum vulgare L.). PMID:34335638
Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748
Non-coding RNAs in the interaction between rice and Meloidogyne graminicola. PMID:34284724
Isolation and Characterization of Barley (Hordeum vulgare) Extracellular Vesicles to Assess Their Role in RNA Spray-Based Crop Protection. PMID:34281265
Structural and biophysical aspects of l-asparaginases: a growing family with amazing diversity. PMID:34258001
Genome-Wide Identification of Powdery Mildew Resistance in Common Bean (Phaseolus vulgaris L.). PMID:34239540
Identification, evolution, expression analysis of phospholipase D (PLD) gene family in tea (Camellia sinensis). PMID:34177145
Wheat ATIs: Characteristics and Role in Human Disease. PMID:34124122
Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize. PMID:34045362
Extracellular DNA of slow growers of mycobacteria and its contribution to biofilm formation and drug tolerance. PMID:34040029
Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants. PMID:34032263
Proline codon pair selection determines ribosome pausing strength and translation efficiency in bacteria. PMID:34002016
De novo transcriptome analysis for examination of the nutrition metabolic system related to the evolutionary process through which stick insects gain the ability of flight (Phasmatodea). PMID:33985569
Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat. PMID:33968112
Extreme Y chromosome polymorphism corresponds to five male reproductive morphs of a freshwater fish. PMID:33958755
Annotation and Molecular Characterisation of the TaIRO3 and TaHRZ Iron Homeostasis Genes in Bread Wheat (Triticum aestivum L.). PMID:33925484
Arthropod Ectoparasites Have Potential to Bind SARS-CoV-2 via ACE. PMID:33921873
Genome-Wide Association Study of Local Thai Indica Rice Seedlings Exposed to Excessive Iron. PMID:33921675
Unfolded Protein Response and Scaffold Independent Pheromone MAP Kinase Signaling Control Verticillium dahliae Growth, Development, and Plant Pathogenesis. PMID:33921172
Developmental Transcriptomics Reveals a Gene Network Driving Mimetic Color Variation in a Bumble Bee. PMID:33881508
Developmental Transcriptomics Reveals a Gene Network Driving Mimetic Color Variation in a Bumble Bee. PMID:33881508
Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias. PMID:33871580
Using precision phenotyping to inform de novo domestication. PMID:33848336
Magnesium and calcium overaccumulate in the leaves of a schengen3 mutant of Brassica rapa. PMID:33831190
MolluscDB: a genome and transcriptome database for molluscs. PMID:33813885
Genome-Wide Association of Stem Carbohydrate Accumulation and Remobilization during Grain Growth in Bread Wheat (Triticum aestivum L.) in Mediterranean Environments. PMID:33809230
Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor. PMID:33798202
Mediation of a GDSL Esterase/Lipase in Carotenoid Esterification in Tritordeum Suggests a Common Mechanism of Carotenoid Esterification in Triticeae Species. PMID:33746990
Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example. PMID:33744946
RNA-seq analysis and gene expression dynamics in the salivary glands of the argasid tick Ornithodoros erraticus along the trophogonic cycle. PMID:33743776
Signal, bias, and the role of transcriptome assembly quality in phylogenomic inference. PMID:33726665
Identification of eight QTL controlling multiple yield components in a German multi-parental wheat population, including Rht24, WAPO-A1, WAPO-B1 and genetic loci on chromosomes 5A and 6A. PMID:33712876
The STI1-domain is a flexible alpha-helical fold with a hydrophobic groove. PMID:33620121
Shared aspects of mRNA expression associated with oocyte maturation failure in humans and rhesus monkeys indicating compromised oocyte quality. PMID:33554756
Sialotranscriptomics of the argasid tick Ornithodoros moubata along the trophogonic cycle. PMID:33544727
BAGET 2.0: an updated web tool for the effortless retrieval of prokaryotic gene context and sequence. PMID:33532841
Identification of the Genetic Basis of Response to De-Acclimation in Winter Barley. PMID:33494371
RNAi gene knockdown in the poultry red mite, Dermanyssus gallinae (De Geer 1778), a tool for functional genomics. PMID:33461614
Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB. PMID:33445429
SLE non-coding genetic risk variant determines the epigenetic dysfunction of an immune cell specific enhancer that controls disease-critical microRNA expression. PMID:33420081
Insight into the bZIP Gene Family in Solanum tuberosum: Genome and Transcriptome Analysis to Understand the Roles of Gene Diversification in Spatiotemporal Gene Expression and Function. PMID:33383823
UniBioDicts: Unified access to biological dictionaries. PMID:33367853
Multi-omics data integration considerations and study design for biological systems and disease. PMID:33347526
Genome-wide identification and evolution of HECT genes in wheat. PMID:33344088
CRISPR/Cas9-mediated knock-in of alligator cathelicidin gene in a non-coding region of channel catfish genome. PMID:33335280
Microbial single-cell RNA sequencing by split-pool barcoding. PMID:33335020
Helixer: Cross-species gene annotation of large eukaryotic genomes using deep learning. PMID:33325516
A putative origin of the insect chemosensory receptor superfamily in the last common eukaryotic ancestor. PMID:33274716
Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea. PMID:33234025
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. PMID:33211869
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database. PMID:33193550
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. PMID:33170273
Identification, evolution, expression, and docking studies of fatty acid desaturase genes in wheat (Triticum aestivum L.). PMID:33167859
Study of the TEAD-binding domain of the YAP protein from animal species. PMID:33146905
Genetic variant affecting the myosin light chain 2 related to familial hypertrophic cardiomyopathy. PMID:33139982
Ensembl 2021. PMID:33137190
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848
In Silico Analyses of Autophagy-Related Genes in Rapeseed (Brassica napus L.) under Different Abiotic Stresses and in Various Tissues. PMID:33092180
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Divergence and Remarkable Diversity of the Y Chromosome in Guppies. PMID:33022040
Regulatory gene function handoff allows essential gene loss in mosquitoes. PMID:32999445
A Reference Genome Sequence for Giant Sequoia. PMID:32948606
Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes. PMID:32938380
Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney. PMID:32908900
Towards an understanding of the role of intrinsic protein disorder on plant adaptation to environmental challenges. PMID:32902806
Histone chaperone FACT represses retrotransposon MERVL and MERVL-derived cryptic promoters. PMID:32894293
TB1: from domestication gene to tool for many trades. PMID:32761247
Defects in the Ferroxidase That Participates in the Reductive Iron Assimilation System Results in Hypervirulence in Botrytis Cinerea. PMID:32753496
A conserved coccidian gene is involved in Toxoplasma sensitivity to the anti-apicomplexan compound, tartrolon E. PMID:32738587
Cas13b-dependent and Cas13b-independent RNA knockdown of viral sequences in mosquito cells following guide RNA expression. PMID:32737398
A single QTL on chromosome 6DS derived from a winter wheat cultivar 'OW104' confers resistance to Wheat yellow mosaic virus. PMID:32714060
A Genome-Wide View of Transcriptional Responses during Aphis glycines Infestation in Soybean. PMID:32707968
Genome-wide identification and characterization of Solanum tuberosum BiP genes reveal the role of the promoter architecture in BiP gene diversity. PMID:32647371
Direct evidence for a new mode of plant defense against insects via a novel polygalacturonase-inhibiting protein expression strategy. PMID:32611768
Evolutionary Aspects of TRPMLs and TPCs. PMID:32545371
Applying genomic resources to accelerate wheat biofortification. PMID:32528079
Identification of Regulatory SNPs Associated with Vicine and Convicine Content of Vicia faba Based on Genotyping by Sequencing Data Using Deep Learning. PMID:32516876
Analysis of FGF20-regulated genes in organ of Corti progenitors by translating ribosome affinity purification. PMID:32492250
Comparative (Within Species) Genomics of the Vitis vinifera L. Terpene Synthase Family to Explore the Impact of Genotypic Variation Using Phased Diploid Genomes. PMID:32431727
Intron and gene size expansion during nervous system evolution. PMID:32410625
Long-term outcomes and response to treatment in diacylglycerol kinase epsilon nephropathy. PMID:32386968
A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat. PMID:32208137
Selected neuropeptide genes show genetic differentiation between Africans and non-Africans. PMID:32171244
Genetic Diversity, Population Structure and Linkage Disequilibrium Assessment among International Sunflower Breeding Collections. PMID:32155892
Wheat PP2C-a10 regulates seed germination and drought tolerance in transgenic Arabidopsis. PMID:32065246
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604
PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets. PMID:31866958 - http://dx.doi.org/10.1093/nar/gkx1011
- http://dx.doi.org/10.1093/nar/gkv1209
Tags:
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome alignment
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome visualization
metasource: Fairsharing.org
version: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
dna
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
rna
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
bioinformatics
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
biology
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
chemical biology
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
eukaryotes
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
gene expression
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
genes
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
prokaryotes
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
proteins
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
sequences
metasource: re3data.org
version: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:06.364802
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome alignment
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genome visualization
metasource: Fairsharing.orgversion: FAIRsharing.org: Ensembl Genomes; Ensembl Genomes; DOI: https://doi.org/10.25504/FAIRsharing.923a0p; Last edited: March 22, 2021, 12:19 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
dna
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
rna
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
bioinformatics
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
biology
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
chemical biology
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
eukaryotes
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
gene expression
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
genes
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
prokaryotes
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
proteins
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
sequences
metasource: re3data.orgversion: re3data.org: Ensembl Genomes; editing status 2020-02-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MW6M last accessed: 2022-11-04
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:06.364802
dna sequences genome genome alignment genome annotation genome visualization human and other vertebrate genomes model organisms dna rna bioinformatics chemical biology eukaryotes gene expression gene genetics prokaryotes proteins sequences genomics
Need help integrating and/or managing biomedical data?