Indel Flanking Region Database
Names
More detailed information about this field from each metasource.
Indel Flanking Region Database
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
IndelFR
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
indelfr
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
Names
More detailed information about this field from each metasource.
Indel Flanking Region Database
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
IndelFR
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
indelfr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
Names
More detailed information about this field from each metasource.
Indel Flanking Region Database
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
IndelFR
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
indelfr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
This source may no longer be available. No known URL could be resolved successfully.
Indel Flanking Region Database is an online resource for indels (insertion/deletions) and the flanking regions of proteins in SCOP superfamilies. It aims at providing a comprehensive dataset for analyzing the qualities of amino acid indels, substitutions and the relationship between them.
Description
More detailed information about this field from each metasource.
Indel Flanking Region Database is an online resource for indels (insertion/deletions) and the flanking regions of proteins in SCOP superfamilies. It aims at providing a comprehensive dataset for analyzing the qualities of amino acid indels, substitutions and the relationship between them.
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Database of indels in protein structures and their flanking regions. Contains indels with flanking regions extracted from structural alignment pairs of non-redundant domains from superfamilies. Provides access to information about indels and their flanking regions.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
Webpage:
http://indel.bioinfo.sdu.edu.cnWebpage
More detailed information about this field from each metasource.
http://indel.bioinfo.sdu.edu.cn
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://indel.bioinfo.sdu.edu.cn/gridsphere/gridsphere
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
Publications:
Publications
More detailed information about this field from each metasource.
Impact of indels on the flanking regions in structural domains
PMID: 20671041
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
IndelFR: a database of indels in protein structures and their flanking regions
PMID: 22127860
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
Publications
More detailed information about this field from each metasource.
Impact of indels on the flanking regions in structural domains
PMID: 20671041
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
IndelFR: a database of indels in protein structures and their flanking regions
PMID: 22127860
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
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Impact of indels on the flanking regions in structural domains
PubMed citations: 23.
23 articles citing: Impact of indels on the flanking regions in structural domains
Expanded analyses of the functional correlations within structural classifications of glycoside hydrolases. PMID:34849197
Using the Evolutionary History of Proteins to Engineer Insertion-Deletion Mutants from Robust, Ancestral Templates Using Graphical Representation of Ancestral Sequence Predictions (GRASP). PMID:34813061
Structure and Function of N-Acetylmannosamine Kinases from Pathogenic Bacteria. PMID:33324800
Structural Evolution of the Glacier Ice Worm Fo ATP Synthase Complex. PMID:32112190
Transition-transversion mutations in the polyketide synthase gene of Aspergillus section Nigri. PMID:31338447
Contributions of substitutions and indels to the structural variations in ancient protein superfamilies. PMID:30355304
Correlated Selection on Amino Acid Deletion and Replacement in Mammalian Protein Sequences. PMID:29955898
Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein. PMID:28369116
A Newly Determined Member of the meso-Diaminopimelate Dehydrogenase Family with a Broad Substrate Spectrum. PMID:28341677
MSAIndelFR: a scheme for multiple protein sequence alignment using information on indel flanking regions. PMID:26597571
Nucleotide insertions and deletions complement point mutations to massively expand the diversity created by somatic hypermutation of antibodies. PMID:25320089
Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family. PMID:24872444
Different patterns of gene structure divergence following gene duplication in Arabidopsis. PMID:24063813
A role for indels in the evolution of Cro protein folds. PMID:23843258
Evolution of protein indels in plants, animals and fungi. PMID:23826714
Fine-scale signatures of molecular evolution reconcile models of indel-associated mutation. PMID:23558593
An indel polymorphism in the hybrid incompatibility gene lethal hybrid rescue of Drosophila is functionally relevant. PMID:22865735
Local structural differences in homologous proteins: specificities in different SCOP classes. PMID:22745680
Accurate reconstruction of insertion-deletion histories by statistical phylogenetics. PMID:22536326
Insertions and deletions trigger adaptive walks in Drosophila proteins. PMID:22456880
IndelFR: a database of indels in protein structures and their flanking regions. PMID:22127860
The combined effects of amino acid substitutions and indels on the evolution of structure within protein families. PMID:21179197
Regional context in the alignment of biological sequence pairs. PMID:21107551 -
IndelFR: a database of indels in protein structures and their flanking regions
PubMed citations: 10.
10 articles citing: IndelFR: a database of indels in protein structures and their flanking regions
Expanded analyses of the functional correlations within structural classifications of glycoside hydrolases. PMID:34849197
Transition-transversion mutations in the polyketide synthase gene of Aspergillus section Nigri. PMID:31338447
Contributions of substitutions and indels to the structural variations in ancient protein superfamilies. PMID:30355304
Characterization of parasite-specific indels and their proposed relevance for selective anthelminthic drug targeting. PMID:26829384
Structural homology guided alignment of cysteine rich proteins. PMID:26788439
MSAIndelFR: a scheme for multiple protein sequence alignment using information on indel flanking regions. PMID:26597571
Nucleotide insertions and deletions complement point mutations to massively expand the diversity created by somatic hypermutation of antibodies. PMID:25320089
LenVarDB: database of length-variant protein domains. PMID:24194591
Evolution of protein indels in plants, animals and fungi. PMID:23826714
SeqFIRE: a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignments. PMID:22693213
Tags:
Tags
More detailed information about this field from each metasource.
hydrophilicity
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
hydrophobicity
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
indel
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein folds and structural domains
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
protein structure analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309
Tags
More detailed information about this field from each metasource.
hydrophilicity
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
hydrophobicity
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
indel
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: IndelFR; Indel Flanking Region Database; DOI: https://doi.org/10.25504/FAIRsharing.a4ybgg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein folds and structural domains
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
protein structure analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.869309
hydrophilicity hydrophobicity indel structure polypeptide region protein folds and structural domains transcription factors and regulatory sites proteins small molecule protein structure analysis
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