ADPriboDB
Names
More detailed information about this field from each metasource.
ADPriboDB
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
adpribodb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
Names
More detailed information about this field from each metasource.
ADPriboDB
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
adpribodb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
Names
More detailed information about this field from each metasource.
ADPriboDB
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
adpribodb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
This source may no longer be available. No known URL could be resolved successfully.
ADPriboDB is a database of ADP-ribosylated proteins and their literature-identified ADP-ribosylated residues. The database includes a variety of information for each entry, including any drug treatments performed to obtain the identification of the modification, cell lines and species, the ADP-ribosyltransferases responsible for synthesizing the modification (if known), as well as the site of modification (if identified).
Description
More detailed information about this field from each metasource.
ADPriboDB is a database of ADP-ribosylated proteins and their literature-identified ADP-ribosylated residues. The database includes a variety of information for each entry, including any drug treatments performed to obtain the identification of the modification, cell lines and species, the ADP-ribosyltransferases responsible for synthesizing the modification (if known), as well as the site of modification (if identified).
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
ADP-ribosylated proteins and sites
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
ADPriboDB is a database to facilitate studies in uncovering insights into the mechanisms and biological significance of ADP-ribosylation. ADPriboDB 2.0 serves as a one-stop repository comprising 48 346 entries and 9097 ADP-ribosylated proteins, of which 6708 were newly identified since the original database release.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
Webpage:
http://adpribodb.leunglab.org/Webpage
More detailed information about this field from each metasource.
http://adpribodb.leunglab.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://adpribodb.leunglab.org
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
Publications:
Publications
More detailed information about this field from each metasource.
ADPriboDB: The database of ADP-ribosylated proteins
PMID: 27507885
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
ADPriboDB 2.0: an updated database of ADP-ribosylated proteins
PMID: 33137182
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
https://www.biorxiv.org/content/10.1101/2020.09.24.298851v1.full
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/gkaa941
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
ADPriboDB v2.0: An Updated Database of ADP-ribosylated Proteins
PMID: 32995784
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
Publications
More detailed information about this field from each metasource.
ADPriboDB: The database of ADP-ribosylated proteins
PMID: 27507885
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
ADPriboDB 2.0: an updated database of ADP-ribosylated proteins
PMID: 33137182
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
https://www.biorxiv.org/content/10.1101/2020.09.24.298851v1.full
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/gkaa941
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
ADPriboDB v2.0: An Updated Database of ADP-ribosylated Proteins
PMID: 32995784
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
-
ADPriboDB: The database of ADP-ribosylated proteins
PubMed citations: 22.
22 articles citing: ADPriboDB: The database of ADP-ribosylated proteins
Multi-omics approaches for biomarker discovery in early ovarian cancer diagnosis. PMID:35439677
Neuralized-like protein 4 (NEURL4) mediates ADP-ribosylation of mitochondrial proteins. PMID:35157000
Current status of PTMs structural databases: applications, limitations and prospects. PMID:35020020
The ubiquitin-dependent ATPase p97 removes cytotoxic trapped PARP1 from chromatin. PMID:35013556
Deficiency of PARP-1 and PARP-2 in the mouse uterus results in decidualization failure and pregnancy loss. PMID:34580230
Molecular Tools for the Study of ADP-Ribosylation: A Unified and Versatile Method to Synthesise Native Mono-ADP-Ribosylated Peptides. PMID:33769608
ADPriboDB 2.0: an updated database of ADP-ribosylated proteins. PMID:33137182
ADPriboDB v2.0: An Updated Database of ADP-ribosylated Proteins. PMID:32995784
Poly(ADP-ribose): A Dynamic Trigger for Biomolecular Condensate Formation. PMID:32302549
Ion-Pairing with Triethylammonium Acetate Improves Solid-Phase Extraction of ADP-Ribosylated Peptides. PMID:31859514
The Enigmatic Function of PARP1: From PARylation Activity to PAR Readers. PMID:31842403
Proteomics of Long-Lived Mammals. PMID:31737995
Poly(ADP-ribose)-dependent ubiquitination and its clinical implications. PMID:31077644
An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-Ribosylation. PMID:31040352
Interactions of p53 with poly(ADP-ribose) and DNA induce distinct changes in protein structure as revealed by ATR-FTIR spectroscopy. PMID:30892621
NADP+ is an endogenous PARP inhibitor in DNA damage response and tumor suppression. PMID:30741937
ELTA: Enzymatic Labeling of Terminal ADP-Ribose. PMID:30712989
Poly(ADP-Ribose) Polymerases in Host-Pathogen Interactions, Inflammation, and Immunity. PMID:30567936
Nucleolar-nucleoplasmic shuttling of TARG1 and its control by DNA damage-induced poly-ADP-ribosylation and by nucleolar transcription. PMID:29712969
ADPredict: ADP-ribosylation site prediction based on physicochemical and structural descriptors. PMID:29554239
The C-terminal domain of p53 orchestrates the interplay between non-covalent and covalent poly(ADP-ribosyl)ation of p53 by PARP1. PMID:29216372
PARPs and ADP-ribosylation: recent advances linking molecular functions to biological outcomes. PMID:28202539 -
ADPriboDB 2.0: an updated database of ADP-ribosylated proteins
PubMed citations: 6.
6 articles citing: ADPriboDB 2.0: an updated database of ADP-ribosylated proteins
The C-Terminal Domain of Y-Box Binding Protein 1 Exhibits Structure-Specific Binding to Poly(ADP-Ribose), Which Regulates PARP1 Activity. PMID:35800891
DNA Methylation Malleability and Dysregulation in Cancer Progression: Understanding the Role of PARP1. PMID:35327610
Poly(ADP-ribose) drives condensation of FUS via a transient interaction. PMID:35182479
Current status of PTMs structural databases: applications, limitations and prospects. PMID:35020020
The BRCT domain of PARP1 binds intact DNA and mediates intrastrand transfer. PMID:34919819
ADP-Ribosylation as Post-Translational Modification of Proteins: Use of Inhibitors in Cancer Control. PMID:34639169 - https://www.biorxiv.org/content/10.1101/2020.09.24.298851v1.full
- http://dx.doi.org/10.1093/nar/gkaa941
-
ADPriboDB v2.0: An Updated Database of ADP-ribosylated Proteins
PubMed citations: 0.
0 articles citing: ADPriboDB v2.0: An Updated Database of ADP-ribosylated Proteins
Tags:
Tags
More detailed information about this field from each metasource.
algorithm
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
binding motif
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
computational predictions
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
high-throughput screening
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
methylation
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
phosphorylation
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
post-translation modification site prediction
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
post-translational protein modification
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein domain
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
sequence motif
metasource: Fairsharing.org
version: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
biological databases
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
protein modifications
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
protein folds and structural domains
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
cell biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:01.382221
Tags
More detailed information about this field from each metasource.
algorithm
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
binding motif
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
computational predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
high-throughput screening
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
methylation
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
phosphorylation
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
post-translation modification site prediction
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
post-translational protein modification
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein domain
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
sequence motif
metasource: Fairsharing.orgversion: FAIRsharing.org: ADPriboDB; ADPriboDB; DOI: https://doi.org/10.25504/FAIRsharing.pmdtmg; Last edited: Feb. 4, 2021, 1:22 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
biological databases
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
protein modifications
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
protein folds and structural domains
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
cell biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:01.382221
algorithm binding motif computational predictions high-throughput screening methylation phosphorylation post-translation modification site prediction post-translational protein modification protein protein domain protein interaction sequence motif protein sequence protein family proteins biological small molecule molecular interactions, pathways and networks protein modifications protein folds and structural domains cell biology
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