PRotein Ontology
Names
More detailed information about this field from each metasource.
PRotein Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
PRO
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Protein Ontology
metasource: Biontology / Bioportal
version: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
PR
metasource: Biontology / Bioportal
version: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
The Protein Ontology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
pro
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
Names
More detailed information about this field from each metasource.
PRotein Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
PRO
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Protein Ontology
metasource: Biontology / Bioportalversion: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
PR
metasource: Biontology / Bioportalversion: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
The Protein Ontology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
pro
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
Other names: PRO, Protein Ontology, PR, The Protein Ontology, pro
Names
More detailed information about this field from each metasource.
PRotein Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
PRO
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Protein Ontology
metasource: Biontology / Bioportalversion: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
PR
metasource: Biontology / Bioportalversion: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
The Protein Ontology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
pro
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
Protein Ontology (PRO) provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct class of entities (including specific modified forms, orthologous isoforms, and protein complexes) ranging from the taxon-neutral to the taxon-specific. The ontology has a meta-structure encompassing three areas: proteins based on evolutionary relatedness (ProEvo); protein forms produced from a given gene locus (ProForm); and protein-containing complexes (ProComp).
Description
More detailed information about this field from each metasource.
Protein Ontology (PRO) provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct class of entities (including specific modified forms, orthologous isoforms, and protein complexes) ranging from the taxon-neutral to the taxon-specific. The ontology has a meta-structure encompassing three areas: proteins based on evolutionary relatedness (ProEvo); protein forms produced from a given gene locus (ProForm); and protein-containing complexes (ProComp).
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct class of entities (including specific modified forms, orthologous isoforms, and protein complexes) ranging from the taxon-neutral to the taxon-specific. The ontology has a meta-structure encompassing three areas: proteins based on evolutionary relatedness (ProEvo); protein forms produced from a given gene locus (ProForm); and protein-containing complexes (ProComp).
metasource: Biontology / Bioportalversion: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
Protein Ontology, encompasses a sub-ontology of proteins based on evolutionary relatedness (ProEvo) and a sub-ontology of the multiple protein forms produced from a given gene (ProForm)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
It provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct class of entities (including specific modified forms, orthologous isoforms, and protein complexes) ranging from the taxon-neutral to the taxon-specific.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
Webpage:
https://proconsortium.org/Webpage
More detailed information about this field from each metasource.
https://proconsortium.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://proconsortium.org
metasource: Biontology / Bioportalversion: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
http://pir.georgetown.edu/pro
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
(7)
Publications
More detailed information about this field from each metasource.
The Protein Ontology: a structured representation of protein forms and complexes
PMID: 20935045
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
Protein Ontology: a controlled structured network of protein entities
PMID: 24270789
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Framework for a protein ontology
PMID: 18047702
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities
PMID: 27899649
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The representation of protein complexes in the Protein Ontology (PRO)
PMID: 21929785
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
https://proconsortium.org/pro_pub.shtml
metasource: Biontology / Bioportal
version: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
http://dx.doi.org/10.1093/nar/gkt1173
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
The Protein Ontology: a structured representation of protein forms and complexes
PMID: 20935045
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
Protein Ontology: a controlled structured network of protein entities
PMID: 24270789
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Framework for a protein ontology
PMID: 18047702
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities
PMID: 27899649
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The representation of protein complexes in the Protein Ontology (PRO)
PMID: 21929785
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
https://proconsortium.org/pro_pub.shtml
metasource: Biontology / Bioportalversion: 67.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PR
http://dx.doi.org/10.1093/nar/gkt1173
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
-
The Protein Ontology: a structured representation of protein forms and complexes
PubMed citations: 55.
55 articles citing: The Protein Ontology: a structured representation of protein forms and complexes
iPTMnet RESTful API for Post-translational Modification Network Analysis. PMID:35696082
AnthraxKP: a knowledge graph-based, Anthrax Knowledge Portal mined from biomedical literature. PMID:35653350
Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content. PMID:35388368
Parallel sequence tagging for concept recognition. PMID:35331131
Visual comprehension and orientation into the COVID-19 CIDO ontology. PMID:34224898
The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application. PMID:33677548
Formal axioms in biomedical ontologies improve analysis and interpretation of associated data. PMID:31821406
An ontology for representing hematologic malignancies: the cancer cell ontology. PMID:31272372
OsteoporosAtlas: a human osteoporosis-related gene database. PMID:31086734
The Transcriptomic Toolbox: Resources for Interpreting Large Gene Expression Data within a Precision Medicine Context for Metabolic Disease Atherosclerosis. PMID:31032818
Fish Ontology framework for taxonomy-based fish recognition. PMID:28929028
The development of non-coding RNA ontology. PMID:27990175
AAgAtlas 1.0: a human autoantigen database. PMID:27924021
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. PMID:27899649
KinView: a visual comparative sequence analysis tool for integrated kinome research. PMID:27731453
Coreference resolution improves extraction of Biological Expression Language statements from texts. PMID:27374122
The Proteasix Ontology. PMID:27259807
The Orthology Ontology: development and applications. PMID:27259657
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. PMID:27175225
The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. PMID:27152146
An ontology for major histocompatibility restriction. PMID:26759709
Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization. PMID:26559508
Development of an informatics infrastructure for data exchange of biomolecular simulations: Architecture, data models and ontology. PMID:26387907
eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment. PMID:25815161
Ontology application and use at the ENCODE DCC. PMID:25776021
Gene Ontology Consortium: going forward. PMID:25428369
Egas: a collaborative and interactive document curation platform. PMID:24923820
Phenotype ontologies and cross-species analysis for translational research. PMID:24699242
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. PMID:24571547
The neurological disease ontology. PMID:24314207
Protein Ontology: a controlled structured network of protein entities. PMID:24270789
Representing annotation compositionality and provenance for the Semantic Web. PMID:24268021
Activities at the Universal Protein Resource (UniProt). PMID:24253303
The Reactome pathway knowledgebase. PMID:24243840
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. PMID:24093723
GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework. PMID:24078711
Ontology based molecular signatures for immune cell types via gene expression analysis. PMID:24004649
NCBI2RDF: enabling full RDF-based access to NCBI databases. PMID:23984425
CLASSIFYING PROCESSES: AN ESSAY IN APPLIED ONTOLOGY. PMID:23888086
Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint. PMID:23749465
Query enhancement through the practical application of ontology: the IEDB and OBI. PMID:23734660
The ChEMBL database as linked open data. PMID:23657106
Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint. PMID:23637705
Proteoform: a single term describing protein complexity. PMID:23443629
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. PMID:23429179
SARConnect: A Tool to Interrogate the Connectivity Between Proteins, Chemical Structures and Activity Data. PMID:23308082
The eFIP system for text mining of protein interaction networks of phosphorylated proteins. PMID:23221174
Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database. PMID:23110975
ProKinO: an ontology for integrative analysis of protein kinases in cancer. PMID:22194913
BioCreative III interactive task: an overview. PMID:22151968
The representation of protein complexes in the Protein Ontology (PRO). PMID:21929785
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions. PMID:21878109
An open annotation ontology for science on web 3.0. PMID:21624159
Sharing and archiving nucleic acid structure mapping data. PMID:21610212
The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. PMID:21051359 -
Protein Ontology: a controlled structured network of protein entities
PubMed citations: 46.
46 articles citing: Protein Ontology: a controlled structured network of protein entities
Precision omics data integration and analysis with interoperable ontologies and their application for COVID-19 research. PMID:34159360
Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images. PMID:33622235
Ontological modeling and analysis of experimentally or clinically verified drugs against coronavirus infection. PMID:33441564
Ontological Organization and Bioinformatic Analysis of Adverse Drug Reactions From Package Inserts: Development and Usability Study. PMID:32706718
OHMI: the ontology of host-microbiome interactions. PMID:31888755
HisgAtlas 1.0: a human immunosuppression gene database. PMID:31725860
Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices. PMID:31602618
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. PMID:31272389
Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies. PMID:31272374
The cell line ontology-based representation, integration and analysis of cell lines used in China. PMID:31272367
Automatic gene annotation using GO terms from cellular component domain. PMID:30526566
Discovery of Emerging Design Patterns in Ontologies Using Tree Mining. PMID:30505251
LION LBD: a literature-based discovery system for cancer biology. PMID:30304355
Creating a Structured AOP Knowledgebase via Ontology-Based Annotations. PMID:30057931
Identification of errors in the IEDB using ontologies. PMID:29688357
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research. PMID:29485622
Drug target ontology to classify and integrate drug discovery data. PMID:29122012
Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology. PMID:28706471
Building bridges between cellular and molecular structural biology. PMID:28682240
Ontological interpretation of biomedical database content. PMID:28651575
Use of Biomedical Ontologies for Integration of Biological Knowledge for Learning and Prediction of Adverse Drug Reactions. PMID:28469412
Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request. PMID:28253937
iPTMnet: Integrative Bioinformatics for Studying PTM Networks. PMID:28150246
Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature. PMID:28150240
Tutorial on Protein Ontology Resources. PMID:28150233
Protein Bioinformatics Databases and Resources. PMID:28150231
AAgAtlas 1.0: a human autoantigen database. PMID:27924021
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. PMID:27899649
The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis. PMID:27627881
A method for exploring implicit concept relatedness in biomedical knowledge network. PMID:27454167
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable. PMID:27051515
Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases. PMID:26716837
Bioinformatics Knowledge Map for Analysis of Beta-Catenin Function in Cancer. PMID:26509276
Ontology-based representation and analysis of host-Brucella interactions. PMID:26445639
RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information. PMID:26357075
pGenN, a gene normalization tool for plant genes and proteins in scientific literature. PMID:26258475
Perspectives on next steps in classification of oro-facial pain - Part 3: biomarkers of chronic oro-facial pain - from research to clinic. PMID:26200973
Biomedical imaging ontologies: A survey and proposal for future work. PMID:26167381
Citrullination of myofilament proteins in heart failure. PMID:26113265
The Disease Ontology: fostering interoperability between biological and clinical human disease-related data. PMID:26093607
Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework. PMID:25894391
Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system. PMID:25833953
Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows. PMID:25789153
The complex portal--an encyclopaedia of macromolecular complexes. PMID:25313161
RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information. PMID:25122463 -
Framework for a protein ontology
PubMed citations: 44.
44 articles citing: Framework for a protein ontology
The protein-protein interaction ontology: for better representing and capturing the biological context of protein interaction. PMID:34789143
The Progenetix oncogenomic resource in 2021. PMID:34272855
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. PMID:30012108
The role of markup for enabling interoperability in health informatics. PMID:26042043
Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework. PMID:25894391
Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives. PMID:25254202
OMIT: dynamic, semi-automated ontology development for the microRNA domain. PMID:25025130
A method for increasing expressivity of Gene Ontology annotations using a compositional approach. PMID:24885854
Semantic integration of gene expression analysis tools and data sources using software connectors. PMID:24341380
Toward semantic modeling of pharmacogenomic knowledge for clinical and translational decision support. PMID:24303292
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species. PMID:23937709
Epilepsy informatics and an ontology-driven infrastructure for large database research and patient care in epilepsy. PMID:23647220
A semantic proteomics dashboard (SemPoD) for data management in translational research. PMID:23282161
Multiscale integration of -omic, imaging, and clinical data in biomedical informatics. PMID:23231990
A UML profile for the OBO relation ontology. PMID:23095840
Ontologies as integrative tools for plant science. PMID:22847540
Bioinformatics advances in saliva diagnostics. PMID:22699264
Context-specific protein network miner--an online system for exploring context-specific protein interaction networks from the literature. PMID:22493694
Ontological labels for automated location of anatomical shape differences. PMID:22490168
Improving integrative searching of systems chemical biology data using semantic annotation. PMID:22401035
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
INOH: ontology-based highly structured database of signal transduction pathways. PMID:22120663
Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology. PMID:22041276
The representation of protein complexes in the Protein Ontology (PRO). PMID:21929785
Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning. PMID:21789201
An open annotation ontology for science on web 3.0. PMID:21624159
Sharing and archiving nucleic acid structure mapping data. PMID:21610212
Ontologies and standards in bioscience research: for machine or for human. PMID:21519400
Logical development of the cell ontology. PMID:21208450
A tutorial on protein ontology resources for proteomic studies. PMID:21082429
OntoFox: web-based support for ontology reuse. PMID:20569493
Saliva Ontology: an ontology-based framework for a Salivaomics Knowledge Base. PMID:20525291
Evolution of the Sequence Ontology terms and relationships. PMID:20226267
Cross-product extensions of the Gene Ontology. PMID:20152934
Hematopoietic cell types: prototype for a revised cell ontology. PMID:20123131
Integrating phenotype ontologies across multiple species. PMID:20064205
Initial implementation of a comparative data analysis ontology. PMID:19812726
TGF-beta signaling proteins and the Protein Ontology. PMID:19426460
An improved ontological representation of dendritic cells as a paradigm for all cell types. PMID:19243617
Reactome knowledgebase of human biological pathways and processes. PMID:18981052
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. PMID:18975148
The Protein Feature Ontology: a tool for the unification of protein feature annotations. PMID:18936051
Accessing and integrating data and knowledge for biomedical research. PMID:18660883
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. PMID:17989687 -
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities
PubMed citations: 35.
35 articles citing: Protein Ontology (PRO): enhancing and scaling up the representation of protein entities
A Hybrid Protocol for Finding Novel Gene Targets for Various Diseases Using Microarray Expression Data Analysis and Text Mining. PMID:35713858
Design and application of a knowledge network for automatic prioritization of drug mechanisms. PMID:35561182
PubChem Protein, Gene, Pathway, and Taxonomy Data Collections: Bridging Biology and Chemistry through Target-Centric Views of PubChem Data. PMID:35227770
Fission stories: using PomBase to understand Schizosaccharomyces pombe biology. PMID:35100366
Minimal Information about MHC Multimers (MIAMM). PMID:35042788
NETME: on-the-fly knowledge network construction from biomedical literature. PMID:35013714
The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms. PMID:34986596
The Infectious Disease Ontology in the age of COVID-19. PMID:34275487
Genome Wide Prediction, Mapping and Development of Genomic Resources of Mastitis Associated Genes in Water Buffalo. PMID:34222390
COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model. PMID:34015823
IDSM ChemWebRDF: SPARQLing small-molecule datasets. PMID:33980298
Reactome and the Gene Ontology: Digital convergence of data resources. PMID:33964129
Converting disease maps into heavyweight ontologies: general methodology and application to Alzheimer's disease. PMID:33590873
Datanator: an integrated database of molecular data for quantitatively modeling cellular behavior. PMID:33174603
Protein ontology on the semantic web for knowledge discovery. PMID:33046717
Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project. PMID:32939051
COVID-19 Biomarkers in research: Extension of the OncoMX cancer biomarker data model to capture biomarker data from other diseases. PMID:32935101
BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks. PMID:32423472
RESTful API for iPTMnet: a resource for protein post-translational modification network discovery. PMID:32395768
Applying knowledge-driven mechanistic inference to toxicogenomics. PMID:32387679
FibroAtlas: A Database for the Exploration of Fibrotic Diseases and Their Genes. PMID:32082621
A five-level classification system for proteoform identifications. PMID:31451767
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. PMID:31363752
Reporting and connecting cell type names and gating definitions through ontologies. PMID:31272390
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
How Sustainable are Biomedical Ontologies? PMID:30815087
Harmonizing semantic annotations for computational models in biology. PMID:30462164
The Gene Ontology Resource: 20 years and still GOing strong. PMID:30395331
Murine Oviductosomes (OVS) microRNA profiling during the estrous cycle: Delivery of OVS-borne microRNAs to sperm where miR-34c-5p localizes at the centrosome. PMID:30382141
As Ontologies Reach Maturity, Artificial Intelligence Starts Being Fully Efficient: Findings from the Section on Knowledge Representation and Management for the Yearbook 2018. PMID:30157517
Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources. PMID:29695735
Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature. PMID:29523070
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research. PMID:29485622
ProForma: A Standard Proteoform Notation. PMID:29397739
Drug target ontology to classify and integrate drug discovery data. PMID:29122012 -
The representation of protein complexes in the Protein Ontology (PRO)
PubMed citations: 9.
9 articles citing: The representation of protein complexes in the Protein Ontology (PRO)
Protein ontology on the semantic web for knowledge discovery. PMID:33046717
The Transcriptomic Toolbox: Resources for Interpreting Large Gene Expression Data within a Precision Medicine Context for Metabolic Disease Atherosclerosis. PMID:31032818
Tutorial on Protein Ontology Resources. PMID:28150233
Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework. PMID:25894391
Protein Ontology: a controlled structured network of protein entities. PMID:24270789
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. PMID:24093723
Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint. PMID:23749465
Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint. PMID:23637705
Ontologies as integrative tools for plant science. PMID:22847540
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
biocuration
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
data model
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
glycosylation
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
methylation
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
phosphorylation
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
post-translation modification site prediction
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein acetylation
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein-containing complex
metasource: Fairsharing.org
version: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genome annotation terms, ontologies and nomenclature
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
ontology and terminology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
protein variants
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:33.769977
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
biocuration
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
data model
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
glycosylation
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
methylation
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
phosphorylation
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
post-translation modification site prediction
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein acetylation
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein-containing complex
metasource: Fairsharing.orgversion: FAIRsharing.org: PRO; PRotein Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4ndncv; Last edited: Jan. 29, 2020, 2:23 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genome annotation terms, ontologies and nomenclature
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
ontology and terminology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
protein variants
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
gene and protein families
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:33.769977
biocuration data model glycosylation methylation phosphorylation post-translation modification site prediction protein protein acetylation protein-containing complex genomics genome annotation terms, ontologies and nomenclature ontology and terminology proteins protein variants model organisms gene and protein families
Need help integrating and/or managing biomedical data?