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NCBI Assembly

A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.

Description

More detailed information about this field from each metasource.

A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.

metasource: re3data.org
version: re3data.org: NCBI Assembly; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA8 last accessed: 2022-11-04

Webpage:

https://www.ncbi.nlm.nih.gov/assembly

Webpage

More detailed information about this field from each metasource.

https://www.ncbi.nlm.nih.gov/assembly

Licence:

Name: Public Domain

Licence name

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Public Domain

URL: https://www.ncbi.nlm.nih.gov/home/about/policies/

Licence URL

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https://www.ncbi.nlm.nih.gov/home/about/policies/

Tags:

Tags
More detailed information about this field from each metasource.

bacterial genomes
metasource: re3data.org
version: re3data.org: NCBI Assembly; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA8 last accessed: 2022-11-04

genes
metasource: re3data.org
version: re3data.org: NCBI Assembly; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA8 last accessed: 2022-11-04

proteins
metasource: re3data.org
version: re3data.org: NCBI Assembly; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA8 last accessed: 2022-11-04

viral genomes
metasource: re3data.org
version: re3data.org: NCBI Assembly; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA8 last accessed: 2022-11-04

bacterial genomes gene proteins viral genomes

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Entrez Genomes

NCBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes

NCBI Bookshelf

Searchable collection of biomedical books linked to terms in PubMed abstracts; when viewing an abstract, click on Books link to see phrases in abstract hyperlinked to book sections.

PubMed

PubMed® comprises more than 30 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full text content from PubMed Central a ...

ProtClustDB

ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.

Molecular Modeling Database

The Molecular Modeling Database (MMDB), as part of the Entrez system, facilitates access to structure data by connecting them with associated literature, protein and nucleic acid sequences, chemicals, ...

Database resources of the National Center for Biotechnology Information

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NCBI GSS

>>>!!! GSS sequences are now being merged into the NCBI Nucleotide database !!!<<<

Viral Genomes

The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at http://www.ncbi.nlm.nih.gov/genome/vi ...

Conserved Domain Database

The Conserved Domain Database (CDD) brings together several collections of multiple sequence alignments representing conserved domains, including NCBI-curated domains, which use 3D-structure informati ...

Gene Expression Omnibus

The Gene Expression Omnibus (GEO) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitt ...

Database of genomic structural VARiation

dbVar is a database of human genomic structural variation where users can search, view, and download data from submitted studies. dbVar stopped supporting data from non-human organisms in 2017, howeve ...

A Gold Path format

AGP format describes the assembly of a larger sequence object from smaller objects. The large object can be a contig, a scaffold (supercontig), or a chromosome. Each line (row) of the AGP file describ ...

NCBI Virus

NCBI Virus is a community portal for viral sequence data from RefSeq, GenBank and other NCBI repositories.

CloneDB

Clones and libraries: sequence data, map positions and distributor information

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Service status

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine