PRIDB

Names
More detailed information about this field from each metasource.

PRIDB
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

pridb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

Other names: pridb

Protein-RNA Interface Database

Webpage:

http://pridb.gdcb.iastate.edu/

Publications:

Publications
More detailed information about this field from each metasource.

PRIDB: a Protein-RNA interface database
PMID: 21071426
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

http://nar.oxfordjournals.org/content/39/suppl_1/D277
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

PRIDB: a Protein-RNA interface database PubMed citations: 51.

51 articles citing: PRIDB: a Protein-RNA interface database

SAWRPI: A Stacking Ensemble Framework With Adaptive Weight for Predicting ncRNA-Protein Interactions Using Sequence Information. PMID:35360836
PRIP: A Protein-RNA Interface Predictor Based on Semantics of Sequences. PMID:35207594
Resveratrol inhibits the progression of premature senescence partially by regulating v-rel avian reticuloendotheliosis viral oncogene homolog A (RELA) and sirtuin 1 (SIRT1). PMID:35166167
LncRNA FAM83A-AS1 facilitates tumor proliferation and the migration via the HIF-1α/ glycolysis axis in lung adenocarcinoma. PMID:35002507
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
PredictProtein - Predicting Protein Structure and Function for 29 Years. PMID:33999203
Deep Learning in LncRNAome: Contribution, Challenges, and Perspectives. PMID:33266128
Identification of the RNase-binding site of SARS-CoV-2 RNA for anchor primer-PCR detection of viral loading in 306 COVID-19 patients. PMID:32935831
RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information. PMID:32070279
Learning distributed representations of RNA and protein sequences and its application for predicting lncRNA-protein interactions. PMID:31890140
DNA-protein interaction: identification, prediction and data analysis. PMID:30915687
Long Noncoding RNA and Protein Interactions: From Experimental Results to Computational Models Based on Network Methods. PMID:30875752
RPITER: A Hierarchical Deep Learning Framework for ncRNA⁻Protein Interaction Prediction. PMID:30832218
RNA Structural Differentiation: Opportunities with Pattern Recognition. PMID:30513196
Computational approaches for the analysis of RNA-protein interactions: A primer for biologists. PMID:30455357
Prediction of RNA-protein interactions using conjoint triad feature and chaos game representation. PMID:30117758
A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine. PMID:29934510
A Deep Learning Framework for Robust and Accurate Prediction of ncRNA-Protein Interactions Using Evolutionary Information. PMID:29858068
A Brief Review of RNA-Protein Interaction Database Resources. PMID:29657278
Feature-Based and String-Based Models for Predicting RNA-Protein Interaction. PMID:29562711
RPiRLS: Quantitative Predictions of RNA Interacting with Any Protein of Known Sequence. PMID:29495575
Systematic Analysis of the Binding Surfaces between tRNAs and Their Respective Aminoacyl tRNA Synthetase Based on Structural and Evolutionary Data. PMID:29358943
A boosting approach for prediction of protein-RNA binding residues. PMID:29219069
Selecting high-quality negative samples for effectively predicting protein-RNA interactions. PMID:28361676
Non-Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non-Invasive Diagnostic Tools. PMID:28035947
A genome-scale Escherichia coli kinetic metabolic model k-ecoli457 satisfying flux data for multiple mutant strains. PMID:27996047
Sequence-Based Prediction of RNA-Binding Residues in Proteins. PMID:27787829
aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events. PMID:27560805
IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction. PMID:27506469
URS DataBase: universe of RNA structures and their motifs. PMID:27242032
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. PMID:26827237
A MOTIF-BASED METHOD FOR PREDICTING INTERFACIAL RESIDUES IN BOTH THE RNA AND PROTEIN COMPONENTS OF PROTEIN-RNA COMPLEXES. PMID:26776208
Cross-species conservation of complementary amino acid-ribonucleobase interactions and their potential for ribosome-free encoding. PMID:26656258
Computational Prediction of RNA-Binding Proteins and Binding Sites. PMID:26540053
RNA-binding residues prediction using structural features. PMID:26254826
Structure based approach for understanding organism specific recognition of protein-RNA complexes. PMID:25886642
RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information. PMID:25609700
DBBP: database of binding pairs in protein-nucleic acid interactions. PMID:25474259
Re-analysis of cryoEM data on HCV IRES bound to 40S subunit of human ribosome integrated with recent structural information suggests new contact regions between ribosomal proteins and HCV RNA. PMID:25268799
Protein-RNA complexes and efficient automatic docking: expanding RosettaDock possibilities. PMID:25268579
Quantifying sequence and structural features of protein-RNA interactions. PMID:25063293
RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins. PMID:24846307
The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities. PMID:24493033
Computational prediction of associations between long non-coding RNAs and proteins. PMID:24063787
An innate twist between Crick's wobble and Watson-Crick base pairs. PMID:23861536
NPIDB: Nucleic acid-Protein Interaction DataBase. PMID:23193292
PRD: A protein-RNA interaction database. PMID:23055619
Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art. PMID:22574904
Predicting RNA-protein interactions using only sequence information. PMID:22192482
ccPDB: compilation and creation of data sets from Protein Data Bank. PMID:22139939
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
http://nar.oxfordjournals.org/content/39/suppl_1/D277

Tags:

Tags
More detailed information about this field from each metasource.

protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein sequence motifs and active sites
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

protein structural motifs and surfaces
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

protein sequence protein sequence motifs and active sites protein interaction protein structural motifs and surfaces small molecule proteins

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