Brix

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Brix

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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BriX

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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brix

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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Other names: BriX, brix

Protein building blocks for structural analysis, modeling and design

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Publications

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BriX: a database of protein building blocks for structural analysis, modeling and design
PMID: 20972210

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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http://dx.doi.org/10.1093/nar/gkq972

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• BriX: a database of protein building blocks for structural analysis, modeling and design PubMed citations: 24.

  24 articles citing: BriX: a database of protein building blocks for structural analysis, modeling and design

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  Capturing a Crucial 'Disorder-to-Order Transition' at the Heart of the Coronavirus Molecular Pathology-Triggered by Highly Persistent, Interchangeable Salt-Bridges. PMID:35214759

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  Switching an active site helix in dihydrofolate reductase reveals limits to subdomain modularity. PMID:34571014

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  Enhancing fragment-based protein structure prediction by customising fragment cardinality according to local secondary structure. PMID:32357827

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  Computational reconstruction of atomistic protein structures from coarse-grained models. PMID:31969975

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  Adaption of human antibody λ and κ light chain architectures to CDR repertoires. PMID:31535139

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  Tertiary Structural Motif Sequence Statistics Enable Facile Prediction and Design of Peptides that Bind Anti-apoptotic Bfl-1 and Mcl-1. PMID:30773399

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  FoldX accurate structural protein-DNA binding prediction using PADA1 (Protein Assisted DNA Assembly 1). PMID:29608705

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  High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock. PMID:29281622

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  Complex evolutionary footprints revealed in an analysis of reused protein segments of diverse lengths. PMID:29078314

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  Sequence statistics of tertiary structural motifs reflect protein stability. PMID:28552940

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  Protein structural motifs in prediction and design. PMID:28460216

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  Critical Features of Fragment Libraries for Protein Structure Prediction. PMID:28085928

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  Tertiary alphabet for the observable protein structural universe. PMID:27810958

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  C-Terminal Domain of Integrase Binds between the Two Active Sites. PMID:26575940

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  Dynameomics: data-driven methods and models for utilizing large-scale protein structure repositories for improving fragment-based loop prediction. PMID:25142412

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  Construction of pH-sensitive Her2-binding IgG1-Fc by directed evolution. PMID:24964247

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  PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces. PMID:24803671

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  Creating stable stem regions for loop elongation in Fcabs - insights from combining yeast surface display, in silico loop reconstruction and molecular dynamics simulations. PMID:24792385

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  ArchDB 2014: structural classification of loops in proteins. PMID:24265221

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  How long is a piece of loop? PMID:23638343

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  Recurrent structural motifs in non-homologous protein structures. PMID:23574940

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  Secondary structure, a missing component of sequence-based minimotif definitions. PMID:23236358

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  (φ,ψ)₂ motifs: a purely conformation-based fine-grained enumeration of protein parts at the two-residue level. PMID:22198294

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  The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
• http://dx.doi.org/10.1093/nar/gkq972

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structure databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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protein structure

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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protein folds and structural domains

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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small molecules

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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protein folding, stability and design

metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:02.926258

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structure protein structure proteins protein folds and structural domains small molecule protein folding, stability and design