OMPdb

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OMPdb

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:10.138607

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ompdb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:10.138607

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Other names: ompdb

Beta-barrel outer membrane proteins from Gram-negative bacteria

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Publications:

Publications

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OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria
PMID: 20952406

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:10.138607

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http://dx.doi.org/10.1093/nar/gkq863

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria PubMed citations: 26.

  26 articles citing: OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria

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  Hidden neural networks for transmembrane protein topology prediction. PMID:34849210

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  In Silico Analysis of Potential Outer Membrane Beta-Barrel Proteins in Aeromonas hydrophila Pangenome. PMID:34335123

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  Guardians of the Cell: State-of-the-Art of Membrane Proteins from a Computational Point-of-View. PMID:34302667

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  Computational prediction of secreted proteins in gram-negative bacteria. PMID:33897982

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  The antibiotic darobactin mimics a β-strand to inhibit outer membrane insertase. PMID:33854236

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  A Novel Design of Multi-epitope Vaccine Against Helicobacter pylori by Immunoinformatics Approach. PMID:33424523

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  Braun's Lipoprotein Facilitates OmpA Interaction with the Escherichia coli Cell Wall. PMID:28978443

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  In Silico Structure and Sequence Analysis of Bacterial Porins and Specific Diffusion Channels for Hydrophilic Molecules: Conservation, Multimericity and Multifunctionality. PMID:27110766

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  Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins. PMID:27064789

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  Divergence between the Highly Virulent Zoonotic Pathogen Helicobacter heilmannii and Its Closest Relative, the Low-Virulence "Helicobacter ailurogastricus" sp. nov. PMID:26527212

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  Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. PMID:26284514

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  Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes. PMID:26244728

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  Prediction of structural features and application to outer membrane protein identification. PMID:26104144

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  Databases for Microbiologists. PMID:26013493

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  The composition of the global and feature specific cyanobacterial core-genomes. PMID:25852675

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  Key challenges for the creation and maintenance of specialist protein resources. PMID:25820941

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  Protein structure annotation resources. PMID:25502191

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  PDBTM: Protein Data Bank of transmembrane proteins after 8 years. PMID:23203988

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  XatA, an AT-1 autotransporter important for the virulence of Xylella fastidiosa Temecula1. PMID:22950010

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  Genomic analysis indicates the presence of an asymmetric bilayer outer membrane in planctomycetes and verrucomicrobia. PMID:22934092

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  TMBB-DB: a transmembrane β-barrel proteome database. PMID:22843985

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  Methylation and in vivo expression of the surface-exposed Leptospira interrogans outer-membrane protein OmpL32. PMID:22174381

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  Pattern of amino acid substitutions in transmembrane domains of β-barrel membrane proteins for detecting remote homologs in bacteria and mitochondria. PMID:22069449

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  Comparative genomics of Helicobacter pylori and the human-derived Helicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans. PMID:22039924

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  Unique residues involved in activation of the multitasking protease/chaperone HtrA from Chlamydia trachomatis. PMID:21931748

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  Outer membrane proteins can be simply identified using secondary structure element alignment. PMID:21414186
• http://dx.doi.org/10.1093/nar/gkq863

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More detailed information about this field from each metasource. ×

protein sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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databases of individual protein families

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:10.138607

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structure analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:10.138607

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protein sequence protein family proteins structure analysis