R37G7F last accessed: 2022-11-04

NCBI Resources
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

ncbi_resources
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Other names: NCBI, National Center for Biotechnology Information, NCBI Resources, ncbi_resources

The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBankÂ® nucleic acid sequence database and the PubMed database of citations and abstracts published in life science journals. The Entrez system provides search and retrieval operations for most of these data from 35 distinct databases. The E-utilities serve as the programming interface for the Entrez system. Custom implementations of the BLAST program provide sequence-based searching of many specialized datasets. New resources released in the past year include a new PubMed interface, a sequence database search and a gene orthologs page. Additional resources that were updated in the past year include PMC, Bookshelf, My Bibliography, Assembly, RefSeq, viral genomes, the prokaryotic genome annotation pipeline, Genome Workbench, dbSNP, BLAST, Primer-BLAST, IgBLAST and PubChem.

Webpage:

http://www.ncbi.nlm.nih.gov

Licence:

Name: Copyrights
URL: http://www.ncbi.nlm.nih.gov/About/disclaimer.html

Publications: (15)

Publications
More detailed information about this field from each metasource.

Database resources of the National Center for Biotechnology Information
PMID: 26615191
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 29140470
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 18045790
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 17170002
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database Resources of the National Center for Biotechnology Information
PMID: 27899561
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 21097890
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 22140104
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 19910364
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 15608222
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 30395293
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 25398906
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 31602479
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the National Center for Biotechnology Information
PMID: 33095870
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

Database resources of the national center for biotechnology information
PMID: 34850941
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

http://dx.doi.org/10.1093/nar/gkaa892
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Database resources of the National Center for Biotechnology Information PubMed citations: 558.

558 articles citing: Database resources of the National Center for Biotechnology Information

Purification and Characterization of a Novel Extracellular Haloprotease Vpr from Bacillus licheniformis Strain KB111. PMID:35910276
A systematic review of skin ageing genes: gene pleiotropy and genes on the chromosomal band 16q24.3 may drive skin ageing. PMID:35907981
Mutations in SORL1 and MTHFDL1 possibly contribute to the development of Alzheimer's disease in a multigenerational Colombian Family. PMID:35905044
Peroxisome Proliferator-Activated Receptor Activation in Precision-Cut Bovine Liver Slices Reveals Novel Putative PPAR Targets in Periparturient Dairy Cows. PMID:35903133
Confidence bands and hypothesis tests for hit enrichment curves. PMID:35902962
Meta-Prism 2.0: Enabling algorithm and web server for ultra-fast, memory-efficient, and accurate analysis among millions of microbial community samples. PMID:35902093
Transcriptional and Translational Dynamics of Zika and Dengue Virus Infection. PMID:35891396
Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage. PMID:35884206
SANA: cross-species prediction of Gene Ontology GO annotations via topological network alignment. PMID:35859153
Mode of action of fluopyram in plant-parasitic nematodes. PMID:35831379
Characterization of a novel thermophilic metagenomic GH5 endoglucanase heterologously expressed in Escherichia coli and Saccharomyces cerevisiae. PMID:35799200
A Bioinformatics Approach to Investigate Structural and Non-Structural Proteins in Human Coronaviruses. PMID:35774504
Lycophyte transcriptomes reveal two whole-genome duplications in Lycopodiaceae: Insights into the polyploidization of Phlegmariurus. PMID:35769590
Manufacturing Mesenchymal Stromal Cells for the Treatment of Osteoarthritis in Canine Patients: Challenges and Recommendations. PMID:35754551
PhyloFunDB: A Pipeline to Create and Update Functional Gene Taxonomic Databases. PMID:35744611
The Origin and Evolution of RNase T2 Family and Gametophytic Self-incompatibility System in Plants. PMID:35714207
Large-Scale Analysis of X Inactivation Variations between Primed and Naïve Human Embryonic Stem Cells. PMID:35681423
Comparative transcriptome analysis reveals a rapid response to phosphorus deficiency in a phosphorus-efficient rice genotype. PMID:35676419
Single cell transcriptomics reveals dysregulated cellular and molecular networks in a fragile X syndrome model. PMID:35675353
Genetic Variants Associated With Resilience in Human and Animal Studies. PMID:35669264
In search of ecological determinants of fungal infections: A semi-field experiment with folivorous moths. PMID:35646316
Lack of Association between Fluconazole Susceptibility and ERG11 Nucleotide Polymorphisms in Cryptococcus neoformans Clinical Isolates from Uganda. PMID:35628763
Bioprospecting for Thermozymes and Characterization of a Novel Lipolytic Thermozyme Belonging to the SGNH/GDSL Family of Hydrolases. PMID:35628544
High intratumoral dihydrotestosterone is associated with antiandrogen resistance in VCaP prostate cancer xenografts in castrated mice. PMID:35573198
A high-density genome-wide association with absolute blood monocyte count in domestic sheep identifies novel loci. PMID:35522671
Exploring synergies between plant metabolic modelling and machine learning. PMID:35521559
Streptococcus oriscaviae sp. nov. Infection Associated with Guinea Pigs. PMID:35510851
GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure. PMID:35501696
High-Resolution Screening for Marine Prokaryotes and Eukaryotes With Selective Preference for Polyethylene and Polyethylene Terephthalate Surfaces. PMID:35495680
Decoding the PITX2-controlled genetic network in atrial fibrillation. PMID:35471998
Molecular Detection and Genetic Diversity of Tick-Borne Pathogens in Goats from the Southern Part of Thailand. PMID:35456152
Prognostic Value of LINC-ROR (rs1942347) Variant in Patients with Colon Cancer Harboring BRAF Mutation: A Propensity Score-Matched Analysis. PMID:35454158
Prevalence, antimicrobial susceptibility, and genotyping of Streptococcus agalactiae in Tilapia fish (Oreochromis niloticus) in Egypt. PMID:35445125
In silico exploration of lignin peroxidase for unraveling the degradation mechanism employing lignin model compounds. PMID:35423962
Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database. PMID:35415691
Transcriptional Regulation of the Synaptic Vesicle Protein Synaptogyrin-3 (SYNGR3) Gene: The Effects of NURR1 on Its Expression. PMID:35409005
Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome. PMID:35378131
Variants Within Genes EDIL3 and ADGRB3 are Associated With Divergent Fecal Egg Counts in Katahdin Sheep at Weaning. PMID:35360858
Whole Genome Sequence Analysis of a Prototype Strain of the Novel Putative Rotavirus Species L. PMID:35336869
Methyl Jasmonate Activates the 2C Methyl-D-erithrytol 2,4-cyclodiphosphate Synthase Gene and Stimulates Tanshinone Accumulation in Salvia miltiorrhiza Solid Callus Cultures. PMID:35335134
MEN4, the MEN1 Mimicker: A Case Series of three Phenotypically Heterogenous Patients With Unique CDKN1B Mutations. PMID:35323929
Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data. PMID:35288552
Chemotaxonomic Classification of Peucedanum japonicum and Its Chemical Correlation with Peucedanum praeruptorum, Angelica decursiva, and Saposhnikovia divaricata by Liquid Chromatography Combined with Chemometrics. PMID:35268776
In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs. PMID:35223533
Regulation of GTPase function by autophosphorylation. PMID:35202574
Novel RAB3GAP1 Mutation in the First Tunisian Family With Warburg Micro Syndrome. PMID:35196747
Identification of Distinct Characteristics of Antibiofilm Peptides and Prospection of Diverse Sources for Efficacious Sequences. PMID:35185814
An efficient and specific CRISPR-Cas9 genome editing system targeting soybean phytoene desaturase genes. PMID:35168613
Molecular evolution of hatching enzymes and their paralogous genes in vertebrates. PMID:35109790
Inferring Protein Function in an Emerging Virus: Detection of the Nucleoprotein in Tilapia Lake Virus. PMID:35107373
Crystal structure and initial characterization of a novel archaeal-like Holliday junction-resolving enzyme from Thermus thermophilus phage Tth15-6. PMID:35102887
Complexome Profiling-Exploring Mitochondrial Protein Complexes in Health and Disease. PMID:35096826
Multi-tumor analysis of cancer-stroma interactomes of patient-derived xenografts unveils the unique homeostatic process in renal cell carcinomas. PMID:35079698
MinION™ Nanopore Sequencing of Skin Microbiome 16S and 16S-23S rRNA Gene Amplicons. PMID:35071053
The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity. PMID:35069509
Bringing bioinformatics to schools with the 4273pi project. PMID:35051174
Core promoter mutation contributes to abnormal gene expression in bladder cancer. PMID:35033028
Identification, functional characterization, assembly and structure of ToxIN type III toxin-antitoxin complex from E. coli. PMID:35018473
Completing the Genome Sequence of Chlamydia pecorum Strains MC/MarsBar and DBDeUG: New Insights into This Enigmatic Koala (Phascolarctos cinereus) Pathogen. PMID:34959498
Insights from a comprehensive study of Trypanosoma cruzi: A new mitochondrial clade restricted to North and Central America and genetic structure of TcI in the region. PMID:34919556
Novel high-resolution targeted sequencing of the cervicovaginal microbiome. PMID:34915863
Development and comparison of loop-mediated isothermal amplification with quantitative PCR for the specific detection of Saprolegnia spp. PMID:34898622
Collapse of the mammoth-steppe in central Yukon as revealed by ancient environmental DNA. PMID:34880234
Looking through the FOG: microbiome characterization and lipolytic bacteria isolation from a fatberg site. PMID:34870579
Metallothionein 3-Zinc Axis Suppresses Caspase-11 Inflammasome Activation and Impairs Antibacterial Immunity. PMID:34867993
Indigenous microbial communities in heavy oil show a threshold response to salinity. PMID:34864985
A statistical analysis of antigenic similarity among influenza A (H3N2) viruses. PMID:34825090
Multistate Outbreak of SARS-CoV-2 Infections, Including Vaccine Breakthrough Infections, Associated with Large Public Gatherings, United States. PMID:34793690
Pneumococcal Extracellular Serine Proteases: Molecular Analysis and Impact on Colonization and Disease. PMID:34790590
Assemblies of the genomes of parasitic wasps using meta-assembly and scaffolding with genetic linkage. PMID:34751385
Ancestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation. PMID:34727710
Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891
Novel Candidate Genes Differentially Expressed in Glyphosate-Treated Horseweed (Conyza canadensis). PMID:34681011
Global Transcriptome Characterization and Assembly of the Thermophilic Ascomycete Chaetomium thermophilum. PMID:34680944
Text Mining for Building Biomedical Networks Using Cancer as a Case Study. PMID:34680062
Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences. PMID:34655133
Mitochondrial Genomes, Phylogenetic Associations, and SNP Recovery for the Key Invasive Ponto-Caspian Amphipods in Europe. PMID:34638649
Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes. PMID:34627149
Protein expression reveals a molecular sexual identity of avian primordial germ cells at pre-gonadal stages. PMID:34584135
A systematic bioinformatics approach for large-scale identification and characterization of host-pathogen shared sequences. PMID:34583643
Metatranscriptomic Analysis of Human Lung Metagenomes from Patients with Lung Cancer. PMID:34573440
A Robust Seven-Gene Signature Associated With Tumor Microenvironment to Predict Survival Outcomes of Patients With Stage III-IV Lung Adenocarcinoma. PMID:34552612
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole. PMID:34531387
DIMPL: a bioinformatics pipeline for the discovery of structured noncoding RNA motifs in bacteria. PMID:34524415
Rescuing Low Frequency Variants within Intra-Host Viral Populations directly from Oxford Nanopore sequencing data. PMID:34518837
Genome Mining and Molecular Networking-Based Metabolomics of the Marine Facultative Aspergillus sp. MEXU 27854. PMID:34500798
Longitudinal Secretion of Paramyxovirus RNA in the Urine of Straw-Coloured Fruit Bats (Eidolon helvum). PMID:34452518
Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition. PMID:34446549
Distribution of Denitrification among Haloarchaea: A Comprehensive Study. PMID:34442748
Using Functional Annotations to Study Pairwise Interactions in Urinary Tract Infection Communities. PMID:34440394
Molecular Pathways Involved in the Development of Congenital Erythrocytosis. PMID:34440324
Next-Generation Sequencing Analysis of the Tineola bisselliella Larval Gut Transcriptome Reveals Candidate Enzymes for Keratin Digestion. PMID:34440287
The first complete mitochondrial genome of Macalpinomyces bursus (Ustilaginales: Ustilaginaceae) and insights into its phylogeny. PMID:34377791
Arf GTPase-activating proteins SMAP1 and AGFG2 regulate the size of Weibel-Palade bodies and exocytosis of von Willebrand factor. PMID:34369554
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
The enigmatic RNase MRP of kinetoplastids. PMID:34308760
Complete Genome Sequence of a Bacteroides fragilis Bacteriophage, vB_BfrS_NCTC. PMID:34292066
Organism-Specific training improves performance of linear B-Cell epitope prediction. PMID:34289025
Co-occurrence and patterns of phosphate solubilizing, salt and metal tolerant and antibiotic-resistant bacteria in diverse soils. PMID:34249597
Mutational Landscape of the Proglucagon-Derived Peptides. PMID:34220721
Analysis of High Molecular Mass Compounds from the Spider Pamphobeteus verdolaga Venom Gland. A Transcriptomic and MS ID Approach. PMID:34209760
Molecular Insights into the Oxygen-Sensing Pathway and Erythropoietin Expression Regulation in Erythropoiesis. PMID:34209205
Direct Molecular Evidence for an Ancient, Conserved Developmental Toolkit Controlling Posttranscriptional Gene Regulation in Land Plants. PMID:34196710
Complex Interaction Networks Among Cyanolichens of a Tropical Biodiversity Hotspot. PMID:34177853
Prokaryotic, Fungal, and Unicellular Eukaryotic Core Communities Across Three Sympatric Marine Sponges From the Southwestern Atlantic Coast Are Dominated Largely by Deterministic Assemblage Processes. PMID:34168631
Characterization of Bacterial Community Dynamics of the Human Mouth Throughout Decomposition via Metagenomic, Metatranscriptomic, and Culturing Techniques. PMID:34163458
Online database for brain cancer-implicated genes: exploring the subtype-specific mechanisms of brain cancer. PMID:34144671
Metatranscriptome Library Preparation Influences Analyses of Viral Community Activity During a Brown Tide Bloom. PMID:34135876
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. PMID:34135355
Target identification among known drugs by deep learning from heterogeneous networks. PMID:34123272
Characterization of the Complete Mitochondrial Genome of Basidiomycete Yeast Hannaella oryzae: Intron Evolution, Gene Rearrangement, and Its Phylogeny. PMID:34122362
Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain. PMID:34121661
Cross-Hemisphere Study Reveals Geographically Ubiquitous, Plastic-Specific Bacteria Emerging from the Rare and Unexplored Biosphere. PMID:34106771
Two RmlC homologs catalyze dTDP-4-keto-6-deoxy-D-glucose epimerization in Pseudomonas putida KT2440. PMID:34099824
Contribution of genetic ancestry and polygenic risk score in meeting vitamin B12 needs in healthy Brazilian children and adolescents. PMID:34099811
The nonreceptor tyrosine kinase SRMS inhibits autophagy and promotes tumor growth by phosphorylating the scaffolding protein FKBP51. PMID:34077419
Transcriptional Profiling of Porcine Blastocysts Produced In Vitro in a Chemically Defined Culture Medium. PMID:34069238
Main protease inhibitors and drug surface hotspots for the treatment of COVID-19: A drug repurposing and molecular docking approach. PMID:34052565
Decreased GLUT2 and glucose uptake contribute to insulin secretion defects in MODY3/HNF1A hiPSC-derived mutant β cells. PMID:34035238
PhenCards: a data resource linking human phenotype information to biomedical knowledge. PMID:34034817
Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales. PMID:33999795
MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads. PMID:33981853
Inhibition of hyaluronan secretion by novel coumarin compounds and chitin synthesis inhibitors. PMID:33978736
Identification of linear epitopes on the flagellar proteins of Clostridioides difficile. PMID:33976336
Updates to HCOP: the HGNC comparison of orthology predictions tool. PMID:33959747
Community composition and functional prediction of prokaryotes associated with sympatric sponge species of southwestern Atlantic coast. PMID:33953214
Environmental DNA provides higher resolution assessment of riverine biodiversity and ecosystem function via spatio-temporal nestedness and turnover partitioning. PMID:33941836
Methods for Identifying Microbial Natural Product Compounds that Target Kinetoplastid RNA Structural Motifs by Homology and De Novo Modeled 18S rRNA. PMID:33925823
Molecular Characterisation of Cryptosporidium spp. in Mozambican Children Younger than 5 Years Enrolled in a Matched Case-Control Study on the Aetiology of Diarrhoeal Disease. PMID:33918893
Whole genome-based characterisation of antimicrobial resistance and genetic diversity in Campylobacter jejuni and Campylobacter coli from ruminants. PMID:33903652
Roles of three putative salmon louse (Lepeophtheirus salmonis) prostaglandin E2 synthases in physiology and host-parasite interactions. PMID:33874988
Genomic characterization of a polyvalent hydrocarbonoclastic bacterium Pseudomonas sp. strain BUN14. PMID:33854112
A bird-like genome from a frog: Mechanisms of genome size reduction in the ornate burrowing frog, Platyplectrum ornatum. PMID:33836564
Diosmin Mitigates Cyclophosphamide Induced Premature Ovarian Insufficiency in Rat Model. PMID:33802633
An ancient, conserved gene regulatory network led to the rise of oral venom systems. PMID:33782124
Identification of a Prognostic Signature Model with Tumor Microenvironment for predicting Disease-free Survival after Radical Prostatectomy. PMID:33758613
Introducing the ArsR-Regulated Arsenic Stimulon. PMID:33746923
The Distribution of Several Genomic Virulence Determinants Does Not Corroborate the Established Serotyping Classification of Bacillus thuringiensis. PMID:33668147
A Combined Metagenomics and Metatranscriptomics Approach to Unravel Costa Rican Cocoa Box Fermentation Processes Reveals Yet Unreported Microbial Species and Functionalities. PMID:33664725
Screening of drug databank against WT and mutant main protease of SARS-CoV-2: Towards finding potential compound for repurposing against COVID-19. PMID:33649700
Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense). PMID:33588756
Proposal of the Annotation of Phosphorylated Amino Acids and Peptides Using Biological and Chemical Codes. PMID:33573096
The Role of Low Complexity Regions in Protein Interaction Modes: An Illustration in Huntingtin. PMID:33572172
Comprehensive characterization of protein-protein interactions perturbed by disease mutations. PMID:33558758
Sequence characterisation and novel insights into bovine mastitis-associated Streptococcus uberis in dairy herds. PMID:33542314
Identification of SNPs Associated with Somatic Cell Score in Candidate Genes in Italian Holstein Friesian Bulls. PMID:33535694
The complete mitochondrial genome of yellow crazy ant, Anoplolepis gracilipes (Hymenoptera: Formicidae). PMID:33490524
Phylogenomics of the Maverick Virus-Like Mobile Genetic Elements of Vertebrates. PMID:33481003
Fungi Recorded on Folivorous Lepidoptera: High Diversity Despite Moderate Prevalence. PMID:33466243
Using COVID-19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development. PMID:33463080
Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds. PMID:33452030
The case for open science: rare diseases. PMID:33426479
In silico comparative analysis of Aeromonas Type VI Secretion System. PMID:33410103
Rapid Evolution of HERC6 and Duplication of a Chimeric HERC5/6 Gene in Rodents and Bats Suggest an Overlooked Role of HERCs in Mammalian Immunity. PMID:33391270
The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function. PMID:33383959
Combination of Serum Amyloid A and C-Reactive Protein Exhibit Synergistic Effect in Angiogenesis by Inducing Inflammation and Vascular Network. PMID:33364190
The 287,403 bp Mitochondrial Genome of Ectomycorrhizal Fungus Tuber calosporum Reveals Intron Expansion, tRNA Loss, and Gene Rearrangement. PMID:33362740
Classification and phylogeny for the annotation of novel eukaryotic GNAT acetyltransferases. PMID:33362253
Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum. PMID:33347470
FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction. PMID:33346815
Large expert-curated database for benchmarking document similarity detection in biomedical literature search. PMID:33326193
VIPERdb v3.0: a structure-based data analytics platform for viral capsids. PMID:33313778
MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits. PMID:33300029
Wolbachia infection in wild mosquitoes (Diptera: Culicidae): implications for transmission modes and host-endosymbiont associations in Singapore. PMID:33298138
Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing. PMID:33292386
EphA7 isoforms differentially regulate cortical dendrite development. PMID:33275600
Personalized B cell response to the Lactobacillus rhamnosus GG probiotic in healthy human subjects: a randomized trial. PMID:33274667
Bacterial Immunogenicity Prediction by Machine Learning Methods. PMID:33265930
Prediction of Burkholderia pseudomallei DsbA substrates identifies potential virulence factors and vaccine targets. PMID:33216758
Repurposed drugs and nutraceuticals targeting envelope protein: A possible therapeutic strategy against COVID-19. PMID:33189776
COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics. PMID:33166390
A network medicine approach to investigation and population-based validation of disease manifestations and drug repurposing for COVID-19. PMID:33156843
Chromatin accessibility dynamics of Chlamydia-infected epithelial cells. PMID:33109274
The on-premise data sharing infrastructure e!DAL: Foster FAIR data for faster data acquisition. PMID:33090199
Computational pipeline to probe NaV1.7 gain-of-function variants in neuropathic painful syndromes. PMID:33087732
Immunological Aspects of Chytridiomycosis. PMID:33086692
DualSeqDB: the host-pathogen dual RNA sequencing database for infection processes. PMID:33084904
Forest stratification shapes allometry and flight morphology of tropical butterflies. PMID:33081613
SP_0916 Is an Arginine Decarboxylase That Catalyzes the Synthesis of Agmatine, Which Is Critical for Capsule Biosynthesis in Streptococcus pneumoniae. PMID:33072045
Legacy Effects Overshadow Tree Diversity Effects on Soil Fungal Communities in Oil Palm-Enrichment Plantations. PMID:33066264
Disseminated Saksenaea infection in an immunocompromised host associated with a good clinical outcome: a case report and review of the literature. PMID:33054720
Rich Repertoire of Quorum Sensing Protein Coding Sequences in CPR and DPANN Associated with Interspecies and Interkingdom Communication. PMID:33051376
Vaginal microbiota and human papillomavirus infection among young Swedish women. PMID:33046723
A role for the MEGF6 gene in predisposition to osteoporosis. PMID:33026655
Mixotrophic Iron-Oxidizing Thiomonas Isolates from an Acid Mine Drainage-Affected Creek. PMID:33008825
Multiple Isolated Transcription Factors Act as Switches and Contribute to Species Uniqueness. PMID:33003522
Prediction of potential inhibitors for RNA-dependent RNA polymerase of SARS-CoV-2 using comprehensive drug repurposing and molecular docking approach. PMID:32950529
Short k-mer abundance profiles yield robust machine learning features and accurate classifiers for RNA viruses. PMID:32946529
Exploring changes in the human gut microbiota and microbial-derived metabolites in response to diets enriched in simple, refined, or unrefined carbohydrate-containing foods: a post hoc analysis of a randomized clinical trial. PMID:32936872
Rapid Detection of Azole-Resistant Aspergillus fumigatus in Clinical and Environmental Isolates by Use of a Lab-on-a-Chip Diagnostic System. PMID:32907990
CeRNA Network Analysis Representing Characteristics of Different Tumor Environments Based on 1p/19q Codeletion in Oligodendrogliomas. PMID:32906679
A molecular sensor to quantify the localization of proteins, DNA and nanoparticles in cells. PMID:32901011
Metagenomic and Metatranscriptomic Study of Microbial Metal Resistance in an Acidic Pit Lake. PMID:32899650
Myxosporea (Myxozoa, Cnidaria) Lack DNA Cytosine Methylation. PMID:32898240
UCSF ChimeraX: Structure visualization for researchers, educators, and developers. PMID:32881101
The First Mitochondrial Genome for Geastrales (Sphaerobolus stellatus) Reveals Intron Dynamics and Large-Scale Gene Rearrangements of Basidiomycota. PMID:32849488
Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. PMID:32826334
Identification of critical genes in gastric cancer to predict prognosis using bioinformatics analysis methods. PMID:32793728
Identification of SARS-CoV-2 Cell Entry Inhibitors by Drug Repurposing Using in silico Structure-Based Virtual Screening Approach. PMID:32754161
A conserved coccidian gene is involved in Toxoplasma sensitivity to the anti-apicomplexan compound, tartrolon E. PMID:32738587
Production of Paralytic Shellfish Toxins (PSTs) in Toxic Alexandrium catenella is Intertwined with Photosynthesis and Energy Production. PMID:32727048
Dysbiosis, gut barrier dysfunction and inflammation in dementia: a pilot study. PMID:32690030
Calcium regulates the mycophagous ability of Burkholderia gladioli strain NGJ1 in a type III secretion system-dependent manner. PMID:32689944
A Network Medicine Approach to Investigation and Population-based Validation of Disease Manifestations and Drug Repurposing for COVID-19. PMID:32676577
In Silico Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data. PMID:32669379
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. PMID:32652120
The proofreading activity of Pfprex from Plasmodium falciparum can prevent mutagenesis of the apicoplast genome by oxidized nucleotides. PMID:32636411
Impact of Different Trace Elements on the Growth and Proteome of Two Strains of Granulicella, Class "Acidobacteriia". PMID:32625179
Fulvic acid increases forage legume growth inducing preferential up-regulation of nodulation and signalling-related genes. PMID:32599619
Determining the Genetic Characteristics of Resistance and Virulence of the "Epidermidis Cluster Group" Through Pan-Genome Analysis. PMID:32596166
Mapping CRISPR spaceromes reveals vast host-specific viromes of prokaryotes. PMID:32572116
Epilepsy subtype-specific copy number burden observed in a genome-wide study of 17 458 subjects. PMID:32568404
Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23. PMID:32533007
Coexistence of genetically different Rhizophagus irregularis isolates induces genes involved in a putative fungal mating response. PMID:32514118
Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates. PMID:32511356
Landscape of drug-resistance mutations in kinase regulatory hotspots. PMID:32510566
A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states. PMID:32490206
Vertical lossless genomic data compression tools for assembled genomes: A systematic literature review. PMID:32453750
MAGA: A Supervised Method to Detect Motifs From Annotated Groups in Alignments. PMID:32425492
Early Metazoan Origin and Multiple Losses of a Novel Clade of RIM Presynaptic Calcium Channel Scaffolding Protein Homologs. PMID:32413100
Dynamics of the Stool Virome in Very Early-Onset Inflammatory Bowel Disease. PMID:32406906
The Bioinformatic and In Vitro Studies of Clostridioides Difficile Aminopeptidase M24 Revealed the Immunoreactive KKGIK Peptide. PMID:32392707
Footprints of a Singular 22-Nucleotide RNA Ring at the Origin of Life. PMID:32344921
Comparative Genome Analysis of Hungarian and Global Strains of Salmonella Infantis. PMID:32318036
Comprehensive insights on pivotal prognostic signature involved in clear cell renal cell carcinoma microenvironment using the ESTIMATE algorithm. PMID:32311223
Cathepsin B in neurodegeneration of Alzheimer's disease, traumatic brain injury, and related brain disorders. PMID:32305689
Improving Quantitative Power in Digital PCR through Digital High-Resolution Melting. PMID:32295887
Phylogenetic and sequence analyses of insect transferrins suggest that only transferrin 1 has a role in iron homeostasis. PMID:32237057
Bringing to light the molecular evolution of GUX genes in plants. PMID:32232316
A Critical Role for Estrogen-Related Receptor Signaling in Cardiac Maturation. PMID:32212902
Developing and applying computational resources for biochemistry education. PMID:32203640
Network-based drug repurposing for novel coronavirus 2019-nCoV/SARS-CoV-2. PMID:32194980
Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages. PMID:32154616
Chronic Sublethal Aluminum Exposure and Avena fatua Caryopsis Colonization Influence Gene Expression of Fusarium avenaceum F.a.1. PMID:32117103
Development of epitope-based peptide vaccine against novel coronavirus 2019 (SARS-COV-2): Immunoinformatics approach. PMID:32108359
OmixLitMiner: A Bioinformatics Tool for Prioritizing Biological Leads from 'Omics Data Using Literature Retrieval and Data Mining. PMID:32092871
An In Vitro Pipeline for Screening and Selection of Citrus-Associated Microbiota with Potential Anti-"Candidatus Liberibacter asiaticus" Properties. PMID:32086307
Dynamic Evolution of De Novo DNA Methyltransferases in Rodent and Primate Genomes. PMID:32077945
The African Swine Fever Virus Transcriptome. PMID:32075923
The effects of a multispecies synbiotic on microbiome-related side effects of long-term proton pump inhibitor use: A pilot study. PMID:32066847
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii. PMID:32066773
Quantifying Gene Essentiality Based on the Context of Cellular Components. PMID:32038710
Deep Analysis of Residue Constraints (DARC): identifying determinants of protein functional specificity. PMID:32015389
Dysregulated FXR-FGF19 signaling and choline metabolism are associated with gut dysbiosis and hyperplasia in a novel pig model of pediatric NASH. PMID:32003601
Global transcriptome analysis of alfalfa reveals six key biological processes of senescent leaves. PMID:32002335
Osteogenesis imperfecta in a male holstein calf associated with a possible oligogenic origin. PMID:31980012
Identifying SNAREs by Incorporating Deep Learning Architecture and Amino Acid Embedding Representation. PMID:31920706
Diagnostic Profiling of the Human Public IgM Repertoire With Scalable Mimotope Libraries. PMID:31849974
Experiment design driven FAIRification of omics data matrices, an exemplar. PMID:31831744
Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume-rhizobia symbiosis. PMID:31828682
In-Silico Evaluation of a New Gene From Wheat Reveals the Divergent Evolution of the CAP160 Homologous Genes Into Monocots. PMID:31820048
Genome-wide screening of abberant methylated drivers combined with relative risk loci in bladder cancer. PMID:31794632
A guide to machine learning for bacterial host attribution using genome sequence data. PMID:31778355
ClinVar: improvements to accessing data. PMID:31777943
Genome size and endopolyploidy evolution across the moss phylogeny. PMID:31777923
Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu. PMID:31768063
A network-based approach to uncover microRNA-mediated disease comorbidities and potential pathobiological implications. PMID:31754458
Gene Regulation Shifts Shed Light on Fungal Adaption in Plant Biomass Decomposers. PMID:31744914
A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification. PMID:31736924
The origin and evolution of cell-intrinsic antibacterial defenses in eukaryotes. PMID:31731216
Complete hybrid genome assembly of clinical multidrug-resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial-resistance genes and plasmids. PMID:31697231
Microbiome responses during virulence adaptation by a phloem-feeding insect to resistant near-isogenic rice lines. PMID:31695897
'One DB to rule them all'-the RING: a Regulatory INteraction Graph combining TFs, genes/proteins, SNPs, diseases and drugs. PMID:31682269
Presence of CC Genotype for rs17773430 Could Affect the Percentage of Excess Weight Loss 1 Year After Bariatric Surgery: Tehran Obesity Treatment Study (TOTS). PMID:31637671
Zinc uptake in the Basidiomycota: Characterization of zinc transporters in Ustilago maydis. PMID:31617434
Differential interaction of the dark septate endophyte Cadophora sp. and fungal pathogens in vitro and in planta. PMID:31609451
Application of Augmented Intelligence for Pharmacovigilance Case Seriousness Determination. PMID:31605285
Orthologous nuclear markers and new transcriptomes that broadly cover the phylogenetic diversity of Acanthaceae. PMID:31572631
Genome Improvement and Genetic Map Construction for Aethionema arabicum, the First Divergent Branch in the Brassicaceae Family. PMID:31554715
PARAGEN 1.0: A Standardized Synthetic Gene Library for Fast Cell-Free Bacteriocin Synthesis. PMID:31552239
Reference gene and small RNA data from multiple tissues of Davidia involucrata Baill. PMID:31551451
BPSL1626: Reverse and Structural Vaccinology Reveal a Novel Candidate for Vaccine Design against Burkholderia pseudomallei. PMID:31544878
Enabling Web-scale data integration in biomedicine through Linked Open Data. PMID:31531395
Homologous recombination shapes the genetic diversity of African swine fever viruses. PMID:31500735
High-Quality Draft Genome Sequence of the Causal Agent of the Current Panama Disease Epidemic. PMID:31488538
Prospects of genomic resources available at the global databases for the flora of United Arab Emirates. PMID:31475085
Insights into pathological mutations in insulin-like growth factor I through in silico screening and molecular dynamics simulation. PMID:31456057
Extensive Thioautotrophic Gill Endosymbiont Diversity within a Single Ctena orbiculata (Bivalvia: Lucinidae) Population and Implications for Defining Host-Symbiont Specificity and Species Recognition. PMID:31455638
A Novel Computational Model for Predicting microRNA-Disease Associations Based on Heterogeneous Graph Convolutional Networks. PMID:31455028
In-silico Design of DNA Oligonucleotides: Challenges and Approaches. PMID:31452858
Whole-genome sequence analysis of multidrug-resistant uropathogenic strains of Escherichia coli from Mexico. PMID:31447566
Biomarkers for oralization during long-term proton pump inhibitor therapy predict survival in cirrhosis. PMID:31427714
Haemoproteosis lethality in a woodpecker, with molecular and morphological characterization of Haemoproteus velans (Haemosporida, Haemoproteidae). PMID:31417845
Phellem Cell-Wall Components Are Discriminants of Cork Quality in Quercus suber. PMID:31417580
Antibiotic treatment of Chlamydia-induced cystitis in the koala is linked to expression of key inflammatory genes in reactive oxygen pathways. PMID:31415633
Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human. PMID:31400206
A genome-wide positioning systems network algorithm for in silico drug repurposing. PMID:31375661
Sinopyrophorinae, a new subfamily of Elateridae (Coleoptera, Elateroidea) with the first record of a luminous click beetle in Asia and evidence for multiple origins of bioluminescence in Elateridae. PMID:31363346
Novel Methicillin-Resistant Staphylococcus aureus CC8 Clone Identified in a Hospital Setting in Armenia. PMID:31354680
GAA variants and phenotypes among 1,079 patients with Pompe disease: Data from the Pompe Registry. PMID:31342611
PHANOTATE: a novel approach to gene identification in phage genomes. PMID:31329826
geneHummus: an R package to define gene families and their expression in legumes and beyond. PMID:31319791
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. PMID:31285584
piRDisease v1.0: a manually curated database for piRNA associated diseases. PMID:31267133
Proteomic analysis of the effect of the polyphenol pentagalloyl glucose on proteins involved in neurodegenerative diseases in activated BV‑2 microglial cells. PMID:31257500
The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16. PMID:31236137
Coding palindromes in mitochondrial genes of Nematomorpha. PMID:31194871
Identification of Breast Cancer Stem Cell Related Genes Using Functional Cellular Assays Combined With Single-Cell RNA Sequencing in MDA-MB-231 Cells. PMID:31191614
ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer. PMID:31169290
Anaerobic methanotrophic archaea of the ANME-2d clade feature lipid composition that differs from other ANME archaea. PMID:31150548
Nutrient-sensitive transcription factors TFEB and TFE3 couple autophagy and metabolism to the peripheral clock. PMID:31126958
Comparing the accuracy of PCR-capillary electrophoresis and cuticle microhistological analysis for assessing diet composition in ungulates: A case study with Pyrenean chamois. PMID:31116750
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. PMID:31114926
Simple ClinVar: an interactive web server to explore and retrieve gene and disease variants aggregated in ClinVar database. PMID:31114901
Transmission of a New Polerovirus Infecting Pepper by the Whitefly Bemisia tabaci. PMID:31092571
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates. PMID:31086982
System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris. PMID:31072303
Using the Plasmodium mitochondrial genome for classifying mixed-species infections and inferring the geographical origin of P. falciparum parasites imported to the U.S. PMID:31039178
Dynamics of Dual Specificity Phosphatases and Their Interplay with Protein Kinases in Immune Signaling. PMID:31035605
SEanalysis: a web tool for super-enhancer associated regulatory analysis. PMID:31028388
The necessity of ZSCAN4 for preimplantation development and gene expression of bovine embryos. PMID:31019155
Diversity and Distribution of Bacteria Producing Known Secondary Metabolites. PMID:31016338
Impact framework: A python package for writing data analysis workflows to interpret microbial physiology. PMID:31011536
Conformational Dynamics and Allosteric Regulation Landscapes of Germline PTEN Mutations Associated with Autism Compared to Those Associated with Cancer. PMID:31006514
Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus. PMID:30995908
Genome-wide association study of an unusual dolphin mortality event reveals candidate genes for susceptibility and resistance to cetacean morbillivirus. PMID:30976305
Pathway centrality in protein interaction networks identifies putative functional mediating pathways in pulmonary disease. PMID:30971743
Gcorn Plant: A Database for Retrieving Functional and Evolutionary Traits of Plant Genes. PMID:30971448
Proteomic analysis reveals novel insights into tanshinones biosynthesis in Salvia miltiorrhiza hairy roots. PMID:30962498
Advancing Computational Toxicology in the Big Data Era by Artificial Intelligence: Data-Driven and Mechanism-Driven Modeling for Chemical Toxicity. PMID:30907586
Associations Between Catecholaminergic and Serotonergic Genes and Persistent Arm Pain Severity Following Breast Cancer Surgery. PMID:30904518
Trends in the Use of Common Words and Patient-Centric Language in the Titles of Medical Journals, 1976-2015. PMID:30901051
Network-based prediction of drug combinations. PMID:30867426
Design, implementation, and operation of a rapid, robust named entity recognition web service. PMID:30850898
Machine learning approaches outperform distance- and tree-based methods for DNA barcoding of Pterocarpus wood. PMID:30825008
The anti-cancer drug 5-fluorouracil affects cell cycle regulators and potential regulatory long non-coding RNAs in yeast. PMID:30760080
Mitochondrial acetyl-CoA reversibly regulates locus-specific histone acetylation and gene expression. PMID:30737248
The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes. PMID:30732586
Use of shotgun metagenomics for the identification of protozoa in the gut microbiota of healthy individuals from worldwide populations with various industrialization levels. PMID:30726303
Capturing sequence diversity in metagenomes with comprehensive and scalable probe design. PMID:30718881
A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation. PMID:30705745
MACPET: model-based analysis for ChIA-PET. PMID:30698663
Comparative genomics of Bacteria commonly identified in the built environment. PMID:30691394
LCSS-Based Algorithm for Computing Multivariate Data Set Similarity: A Case Study of Real-Time WSN Data. PMID:30621241
Polychromophilus melanipherus and haemoplasma infections not associated with clinical signs in southern bent-winged bats (Miniopterus orianae bassanii) and eastern bent-winged bats (Miniopterus orianae oceanensis). PMID:30619705
CRlncRNA: a manually curated database of cancer-related long non-coding RNAs with experimental proof of functions on clinicopathological and molecular features. PMID:30598113
Rapid birth-death evolution and positive selection in detoxification-type glutathione S-transferases in mammals. PMID:30586459
Classifying mild traumatic brain injuries with functional network analysis. PMID:30577783
Identifying mouse developmental essential genes using machine learning. PMID:30563825
GLUE: a flexible software system for virus sequence data. PMID:30563445
Evolution of Hepatitis B Virus Receptor NTCP Reveals Differential Pathogenicities and Species Specificities of Hepadnaviruses in Primates, Rodents, and Bats. PMID:30541833
Taxonomic and functional heterogeneity of the gill microbiome in a symbiotic coastal mangrove lucinid species. PMID:30518817
Genomic Analysis of Rhodococcus sp. Br-6, a Bromate Reducing Bacterium Isolated From Soil in Chiba, Japan. PMID:30510597
Lignin-Degrading Abilities of Novel Autochthonous Fungal Isolates Trametes hirsuta F13 and Stereum gausapatum F28. PMID:30510479
The BioGRID interaction database: 2019 update. PMID:30476227
Long non-coding RNAs influence the transcriptome in pulmonary arterial hypertension: the role of PAXIP1-AS1. PMID:30450722
Mollusc genomes reveal variability in patterns of LTR-retrotransposons dynamics. PMID:30442098
The crowns have eyes: multiple opsins found in the eyes of the crown-of-thorns starfish Acanthaster planci. PMID:30419810
Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis. PMID:30381904
dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data. PMID:30380085
Cytogenetic and Transcriptomic Analysis of Human Endometrial MSC Retaining Proliferative Activity after Sublethal Heat Shock. PMID:30366433
Defining Essentiality Score of Protein-Coding Genes and Long Noncoding RNAs. PMID:30356729
Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains. PMID:30333799
Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants. PMID:30291143
Alterations of the Gut Microbiome Associated With the Treatment of Hyperuricaemia in Male Rats. PMID:30283432
Fish Gut Microbiome: Current Approaches and Future Perspectives. PMID:30262950
Chromosome Y-encoded antigens associate with acute graft-versus-host disease in sex-mismatched stem cell transplant. PMID:30262602
Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans. PMID:30248107
Understanding the role of glucose regulated protein 170 (GRP170) as a nucleotide exchange factor through molecular simulations. PMID:30205291
Expression of novel nitrate reductase genes in the harmful alga, Chattonella subsalsa. PMID:30194416
Five Years of the KNIME Vernalis Cheminformatics Community Contribution. PMID:30182834
SIG-DB: Leveraging homomorphic encryption to securely interrogate privately held genomic databases. PMID:30180163
CRISPR/Cas9 gene editing for the creation of an MGAT1-deficient CHO cell line to control HIV-1 vaccine glycosylation. PMID:30157178
An analysis of aging-related genes derived from the Genotype-Tissue Expression project (GTEx). PMID:30155276
A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation. PMID:30154828
Malaria parasite translocon structure and mechanism of effector export. PMID:30150771
Diversity and Dynamics of "Candidatus Endobugula" and Other Symbiotic Bacteria in Chinese Populations of the Bryozoan, Bugula neritina. PMID:30141128
Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort. PMID:30139999
Odontoameloblastoma with extensive chondroid matrix deposition in a guinea pig. PMID:30132419
Building atomic models based on near atomic resolution cryoEM maps with existing tools. PMID:30114513
Therapeutic Effect of Repurposed Temsirolimus in Lung Adenocarcinoma Model. PMID:30087612
Novel Divergent Polar Bear-Associated Mastadenovirus Recovered from a Deceased Juvenile Polar Bear. PMID:30045965
Network-based approach to prediction and population-based validation of in silico drug repurposing. PMID:30002366
Loose ends: almost one in five human genes still have unresolved coding status. PMID:29982784
Restricted Localization of Photosynthetic Intracytoplasmic Membranes (ICMs) in Multiple Genera of Purple Nonsulfur Bacteria. PMID:29970460
Pm61: a recessive gene for resistance to powdery mildew in wheat landrace Xuxusanyuehuang identified by comparative genomics analysis. PMID:29967989
Chromatin Remodeling Proteins in Epilepsy: Lessons From CHD2-Associated Epilepsy. PMID:29962935
Closed Genome Sequence of Clostridium botulinum Strain CFSAN064329 (62A). PMID:29954889
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors. PMID:29951113
Transcriptional and Translational Landscape of Equine Torovirus. PMID:29950409
Acetylenotrophy: a hidden but ubiquitous microbial metabolism? PMID:29933435
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features. PMID:29927082
Draft genome sequence of Trametes villosa (Sw.) Kreisel CCMB561, a tropical white-rot Basidiomycota from the semiarid region of Brazil. PMID:29904660
Dataset of the first transcriptome assembly of the tree crop "yerba mate" (Ilex paraguariensis) and systematic characterization of protein coding genes. PMID:29876460
BLAST-based validation of metagenomic sequence assignments. PMID:29868286
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
Virus survey in populations of two subspecies of bent-winged bats (Miniopterus orianae bassanii and oceanensis) in south-eastern Australia reveals a high prevalence of diverse herpesviruses. PMID:29795610
Contributions of the RhoA guanine nucleotide exchange factor Net1 to polyoma middle T antigen-mediated mammary gland tumorigenesis and metastasis. PMID:29769144
Viromes of one year old infants reveal the impact of birth mode on microbiome diversity. PMID:29761040
Small RNA profiling of low biomass samples: identification and removal of contaminants. PMID:29759067
Generation and comparative genomics of synthetic dengue viruses. PMID:29745863
Burly1 is a mouse QTL for lean body mass that maps to a 0.8-Mb region of chromosome 2. PMID:29737391
Sensing the cilium, digital capture of ciliary data for comparative genomics investigations. PMID:29713460
IMPACT web portal: oncology database integrating molecular profiles with actionable therapeutics. PMID:29697364
Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation. PMID:29690879
Evolutionary novelty in gravity sensing through horizontal gene transfer and high-order protein assembly. PMID:29689046
GEOMetaCuration: a web-based application for accurate manual curation of Gene Expression Omnibus metadata. PMID:29688376
A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms. PMID:29632618
De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution. PMID:29615780
Selection of Potential Therapeutic Bacteriophages that Lyse a CTX-M-15 Extended Spectrum β-Lactamase Producing Salmonella enterica Serovar Typhi Strain from the Democratic Republic of the Congo. PMID:29614013
FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. PMID:29608566
taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time. PMID:29588360
Transcriptomic characterization of MRI contrast with focus on the T1-w/T2-w ratio in the cerebral cortex. PMID:29567503
Endophytic biocatalysts with enoate reductase activity isolated from Mentha pulegium. PMID:29550961
Bacterial Preferences for Specific Soil Particle Size Fractions Revealed by Community Analyses. PMID:29527192
Genome-wide transcriptome analysis identifies alternative splicing regulatory network and key splicing factors in mouse and human psoriasis. PMID:29515135
Large Blooms of Bacillales (Firmicutes) Underlie the Response to Wetting of Cyanobacterial Biocrusts at Various Stages of Maturity. PMID:29511079
Cysteine peptidases of Eudiplozoon nipponicum: a broad repertoire of structurally assorted cathepsins L in contrast to the scarcity of cathepsins B in an invasive species of haematophagous monogenean of common carp. PMID:29510760
The Complete Plastome Sequence of an Antarctic Bryophyte Sanionia uncinata (Hedw.) Loeske. PMID:29494552
A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity. PMID:29463659
Effects of cytochrome P450 single nucleotide polymorphisms on methadone metabolism and pharmacodynamics. PMID:29458047
Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon. PMID:29454939
Anaerobic 4-hydroxyproline utilization: Discovery of a new glycyl radical enzyme in the human gut microbiome uncovers a widespread microbial metabolic activity. PMID:29405826
GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data. PMID:29379090
Molecular Genetic Analysis of Human Endometrial Mesenchymal Stem Cells That Survived Sublethal Heat Shock. PMID:29375621
Genomic Region Containing Toll-Like Receptor Genes Has a Major Impact on Total IgM Antibodies Including KLH-Binding IgM Natural Antibodies in Chickens. PMID:29375555
Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes. PMID:29370083
PhenoRank: reducing study bias in gene prioritization through simulation. PMID:29360927
Regeneration in distantly related species: common strategies and pathways. PMID:29354283
Reduced miR-105-1 levels are associated with poor survival of patients with non-small cell lung cancer. PMID:29344230
Clostridium sordellii Pathogenicity Locus Plasmid pCS1-1 Encodes a Novel Clostridial Conjugation Locus. PMID:29339424
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis. PMID:29329524
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing. PMID:29282519
In Silico Analysis of the Small Molecule Content of Outer Membrane Vesicles Produced by Bacteroides thetaiotaomicron Indicates an Extensive Metabolic Link between Microbe and Host. PMID:29276507
Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus. PMID:29270219
Efficient Translation of Epstein-Barr Virus (EBV) DNA Polymerase Contributes to the Enhanced Lytic Replication Phenotype of M81 EBV. PMID:29263273
A next-generation newborn screening pilot study: NGS on dried blood spots detects causal mutations in patients with inherited metabolic diseases. PMID:29247206
Structure and energetic basis of overrepresented λ light chain in systemic light chain amyloidosis patients. PMID:29241665
Genome Assembly and Annotation of the Medicinal Plant Calotropis gigantea, a Producer of Anticancer and Antimalarial Cardenolides. PMID:29237703
Identification and characterization of a novel zebrafish (Danio rerio) pentraxin-carbonic anhydrase. PMID:29230365
The asymmetric cell division machinery in the spiral-cleaving egg and embryo of the marine annelid Platynereis dumerilii. PMID:29228898
eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality. PMID:29220476
FishTrace: a genetic catalogue of European fishes. PMID:29220471
AllerBase: a comprehensive allergen knowledgebase. PMID:29220458
Multi-field query expansion is effective for biomedical dataset retrieval. PMID:29220457
LeishDB: a database of coding gene annotation and non-coding RNAs in Leishmania braziliensis. PMID:29220437
Phylogenetic Distribution of CMP-Neu5Ac Hydroxylase (CMAH), the Enzyme Synthetizing the Proinflammatory Human Xenoantigen Neu5Gc. PMID:29206915
Conserved RNA structures in the intergenic regions of ambisense viruses. PMID:29192224
Closed Genome Sequence of Chryseobacterium piperi Strain CTMT/ATCC BAA-1782, a Gram-Negative Bacterium with Clostridial Neurotoxin-Like Coding Sequences. PMID:29192076
Meta-analysis of Liver and Heart Transcriptomic Data for Functional Annotation Transfer in Mammalian Orthologs. PMID:29187960
Bactofilin-mediated organization of the ParABS chromosome segregation system in Myxococcus xanthus. PMID:29180656
ClinVar: improving access to variant interpretations and supporting evidence. PMID:29165669
Comparative Pan-Genome Analysis of Piscirickettsia salmonis Reveals Genomic Divergences within Genogroups. PMID:29164068
Azole sensitivity in Leptosphaeria pathogens of oilseed rape: the role of lanosterol 14α-demethylase. PMID:29158527
Structural and functional differences in gut microbiome composition in patients undergoing haemodialysis or peritoneal dialysis. PMID:29142271
Genome-wide identification of miRNAs and lncRNAs in Cajanus cajan. PMID:29141604
MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases. PMID:29106642
Increased Affinity for RNA Targets Evolved Early in Animal and Plant Dicer Lineages through Different Structural Mechanisms. PMID:29106606
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions. PMID:29087512
PLATO software provides analytic framework for investigating complexity beyond genome-wide association studies. PMID:29079728
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. PMID:29067736
Integrating evolutionary and regulatory information with a multispecies approach implicates genes and pathways in obsessive-compulsive disorder. PMID:29042551
A High-Resolution Genome-Wide CRISPR/Cas9 Viability Screen Reveals Structural Features and Contextual Diversity of the Human Cell-Essential Proteome. PMID:29038160
Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling. PMID:29035697
Gene Expression as a Dosimeter in Irradiated Drosophila melanogaster. PMID:29035581
Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes. PMID:28992302
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis. PMID:28968850
RUCS: rapid identification of PCR primers for unique core sequences. PMID:28968748
tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine. PMID:28968638
Evolution in fecal bacterial/viral composition in infants of two central African countries (Gabon and Republic of the Congo) during their first month of life. PMID:28968427
Mechanisms of recognition of amyloid-β (Aβ) monomer, oligomer, and fibril by homologous antibodies. PMID:28924036
Coprophagous features in carnivorous Nepenthes plants: a task for ureases. PMID:28912541
The third restriction-modification system from Thermus aquaticus YT-1: solving the riddle of two TaqII specificities. PMID:28911108
Structural signatures of thermal adaptation of bacterial ribosomal RNA, transfer RNA, and messenger RNA. PMID:28910383
Comparison of whole genome sequencing to restriction endonuclease analysis and gel diffusion precipitin-based serotyping of Pasteurella multocida. PMID:28906178
Critical Roles of Dual-Specificity Phosphatases in Neuronal Proteostasis and Neurological Diseases. PMID:28902166
Molecular Resources from Transcriptomes in the Brassicaceae Family. PMID:28900436
Horizontally Acquired Genes Are Often Shared between Closely Related Bacterial Species. PMID:28890711
Transcriptomic profiling in muscle and adipose tissue identifies genes related to growth and lipid deposition. PMID:28877211
Revitalization of a Forward Genetic Screen Identifies Three New Regulators of Fungal Secondary Metabolism in the Genus Aspergillus. PMID:28874473
Spread of Canine Influenza A(H3N2) Virus, United States. PMID:28858604
MSDB: A Comprehensive Database of Simple Sequence Repeats. PMID:28854643
Rat Genome and Model Resources. PMID:28838068
Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse. PMID:28838066
Host-derived viral transporter protein for nitrogen uptake in infected marine phytoplankton. PMID:28827361
Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition. PMID:28821741
A novel small RNA is important for biofilm formation and pathogenicity in Pseudomonas aeruginosa. PMID:28771593
Transcriptome and Metabolite Changes during Hydrogen Cyanamide-Induced Floral Bud Break in Sweet Cherry. PMID:28769948
Pan-genome and phylogeny of Bacillus cereus sensu lato. PMID:28768476
Family History of Early Infant Death Correlates with Earlier Age at Diagnosis But Not Shorter Time to Diagnosis for Severe Combined Immunodeficiency. PMID:28747913
Evolution of the cAMP-dependent protein kinase (PKA) catalytic subunit isoforms. PMID:28742821
Beta-lactamase database (BLDB) - structure and function. PMID:28719998
UCSF ChimeraX: Meeting modern challenges in visualization and analysis. PMID:28710774
Draft Genome Sequence of Bacillus altitudinis YNP4-TSU, Isolated from Yellowstone National Park. PMID:28705979
Microbial Composition and Diversity Patterns in Deep Hyperthermal Aquifers from the Western Plain of Romania. PMID:28702708
Three distinct pneumotypes characterize the microbiome of the lung in BALB/cJ mice. PMID:28683098
SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment. PMID:28674656
Mutations in ARMC9, which Encodes a Basal Body Protein, Cause Joubert Syndrome in Humans and Ciliopathy Phenotypes in Zebrafish. PMID:28625504
Workflow and web application for annotating NCBI BioProject transcriptome data. PMID:28605765
Co-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene. PMID:28583129
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads. PMID:28566690
Ensemble variant interpretation methods to predict enzyme activity and assign pathogenicity in the CAGI4 NAGLU (Human N-acetyl-glucosaminidase) and UBE2I (Human SUMO-ligase) challenges. PMID:28544272
Dataset of the transcribed 45S ribosomal RNA sequence of the tree crop "yerba mate". PMID:28540358
Zika virus evolution and spread in the Americas. PMID:28538734
MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome. PMID:28502612
Discovering and linking public omics data sets using the Omics Discovery Index. PMID:28486464
ImmunoNodes - graphical development of complex immunoinformatics workflows. PMID:28482806
Bioinformatic and expression analysis of the Brassica napus L. cyclophilins. PMID:28473712
Conservation and innovation in the DUX4-family gene network. PMID:28459454
Noumeavirus replication relies on a transient remote control of the host nucleus. PMID:28429720
Laboratory Diagnosis of Lassa Fever. PMID:28404674
A machine learning approach for viral genome classification. PMID:28399797
Association between CACNA1C gene polymorphisms and ritodrine-induced adverse events in preterm labor patients. PMID:28391406
IMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models. PMID:28389638
GSA: Genome Sequence Archive<sup/> PMID:28387199
Avian and Mammalian Facilitative Glucose Transporters. PMID:28379195
Genomics and Metagenomics in Microbial Ecology: Recent Advances and Challenges. PMID:28367917
DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks. PMID:28361678
Convergence of Domain Architecture, Structure, and Ligand Affinity in Animal and Plant RNA-Binding Proteins. PMID:28333205
Principles and Recommendations for Standardizing the Use of the Next-Generation Sequencing Variant File in Clinical Settings. PMID:28315672
Quantitative Contribution of rs75017182 to Dihydropyrimidine Dehydrogenase mRNA Splicing and Enzyme Activity. PMID:28295243
Systems Pharmacology-Based Discovery of Natural Products for Precision Oncology Through Targeting Cancer Mutated Genes. PMID:28294568
An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach. PMID:28216574
Identification of a Degradation Signal Sequence within Substrates of the Mitochondrial i-AAA Protease. PMID:28214511
KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba). PMID:28187156
Comparative genomics of canine hemoglobin genes reveals primacy of beta subunit delta in adult carnivores. PMID:28178945
The Carboxy Terminus of YCF1 Contains a Motif Conserved throughout >500 Myr of Streptophyte Evolution. PMID:28164224
"Big Data" for Breast Cancer: Where to look and what you will find. PMID:28164152
Bridging Chromosomal Architecture and Pathophysiology of Streptococcus pneumoniae. PMID:28158485
Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature. PMID:28150240
Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis. PMID:28139761
Sibling sRNA RyfA1 Influences Shigella dysenteriae Pathogenesis. PMID:28134784
World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide. PMID:28053166
POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. PMID:28053162
GeneBase 1.1: a tool to summarize data from NCBI gene datasets and its application to an update of human gene statistics. PMID:28025344
VaProS: a database-integration approach for protein/genome information retrieval. PMID:28012137
The BioGRID interaction database: 2017 update. PMID:27980099
Alternate-locus aware variant calling in whole genome sequencing. PMID:27964746
Insecticidal Activity of Melaleuca alternifolia Essential Oil and RNA-Seq Analysis of Sitophilus zeamais Transcriptome in Response to Oil Fumigation. PMID:27936192
A Bibliometric History of the Journal GENETICS. PMID:27927899
MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing. PMID:27924023
Evaluating the evaluation of cancer driver genes. PMID:27911828
dbSAP: single amino-acid polymorphism database for protein variation detection. PMID:27903894
The mouse Gene Expression Database (GXD): 2017 update. PMID:27899677
The UCSC Genome Browser database: 2017 update. PMID:27899642
Ensembl 2017. PMID:27899575
Expansion of the Gene Ontology knowledgebase and resources. PMID:27899567
GenBank. PMID:27899564
Database Resources of the National Center for Biotechnology Information. PMID:27899561
ToxReporter: viewing the genome through the eyes of a toxicologist. PMID:27888230
Ten Simple Rules for Developing Public Biological Databases. PMID:27832061
CASTIN: a system for comprehensive analysis of cancer-stromal interactome. PMID:27829362
mirDNMR: a gene-centered database of background de novo mutation rates in human. PMID:27799474
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. PMID:27794040
Exploring human disease using the Rat Genome Database. PMID:27736745
Insulin resistance and diabetes caused by genetic or diet-induced KBTBD2 deficiency in mice. PMID:27708159
South-east Asian Zika virus strain linked to cluster of cases in Singapore, August 2016. PMID:27684526
eSNPO: An eQTL-based SNP Ontology and SNP functional enrichment analysis platform. PMID:27470167
Research Resource: A Reference Transcriptome for Constitutive Androstane Receptor and Pregnane X Receptor Xenobiotic Signaling. PMID:27409825
Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird's-Nest Fern. PMID:27391812
Functional and Evolutionary Characterization of a Gene Transfer Agent's Multilocus "Genome". PMID:27343288
SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis. PMID:27255077
Coevolution of RAC Small GTPases and their Regulators GEF Proteins. PMID:27226705
Research Resources for Nuclear Receptor Signaling Pathways. PMID:27216565
The Chinchilla Research Resource Database: resource for an otolaryngology disease model. PMID:27173523
PepPSy: a web server to prioritize gene products in experimental and biocuration workflows. PMID:27173522
SpinachDB: A Well-Characterized Genomic Database for Gene Family Classification and SNP Information of Spinach. PMID:27148975
GenBank. PMID:26590407
Database resources of the National Center for Biotechnology Information PubMed citations: 492.

492 articles citing: Database resources of the National Center for Biotechnology Information

Mitochondrial 1555 G>A variant as a potential risk factor for childhood glioblastoma. PMID:35571988
Identification of Key Factors for Anoxic Survival of B. cenocepacia H111. PMID:35562951
Revealing the Mechanism of Huazhi Rougan Granule in the Treatment of Nonalcoholic Fatty Liver Through Intestinal Flora Based on 16S rRNA, Metagenomic Sequencing and Network Pharmacology. PMID:35559233
Transitions of foliar mycobiota community and transcriptome in response to pathogenic conifer needle interactions. PMID:35551491
Deep learning of a bacterial and archaeal universal language of life enables transfer learning and illuminates microbial dark matter. PMID:35545619
A targeted capture approach to generating reference sequence databases for chloroplast gene regions. PMID:35432922
Applying Protein-Protein Interactions and Complex Networks to Identify Novel Genes in Retinitis Pigmentosa Pathogenesis. PMID:35409321
Mycorrhized Wheat Plants and Nitrogen Assimilation in Coexistence and Antagonism with Spontaneous Colonization of Pathogenic and Saprophytic Fungi in a Soil of Low Fertility. PMID:35406904
Inferring Species Compositions of Complex Fungal Communities from Long- and Short-Read Sequence Data. PMID:35404122
CRISPR/Cas-Based Gene Editing Strategies for DOCK8 Immunodeficiency Syndrome. PMID:35373187
Current progress and open challenges for applying deep learning across the biosciences. PMID:35365602
Profiles of telomeric repeats in Insecta reveal diverse forms of telomeric motifs in Hymenopterans. PMID:35365574
Tracing back variations in archaeal ESCRT-based cell division to protein domain architectures. PMID:35358274
Analysis of human clinical and environmental Leptospira to elucidate the eco-epidemiology of leptospirosis in Yaeyama, subtropical Japan. PMID:35358181
Down-regulation of the bacterial protein biosynthesis machinery in response to weeks, years, and decades of soil warming. PMID:35333567
Identification of Alternative Splicing Events Associated with Paratuberculosis in Dairy Cattle Using Multi-Tissue RNA Sequencing Data. PMID:35328051
A Systematic Review to Define the Multi-Faceted Role of Lysine Methyltransferase SETD7 in Cancer. PMID:35326563
Draft genomes assembly and annotation of Carex parvula and Carex kokanica reveals stress-specific genes. PMID:35322069
Detection and Analysis of Syntenic Quantitative Trait Loci Controlling Cell Wall Quality in Angiosperms. PMID:35310628
The Easy-to-Use SARS-CoV-2 Assembler for Genome Sequencing: Development Study. PMID:35309411
Recurrent allopolyploidization, Y-chromosome introgression and the evolution of sexual systems in the plant genus Mercurialis. PMID:35306889
Regulator of Actin-Based Motility (RoaM) Downregulates Actin Tail Formation by Rickettsia rickettsii and Is Negatively Selected in Mammalian Cell Culture. PMID:35285700
Comparative Genomics on Cultivated and Uncultivated Freshwater and Marine "Candidatus Manganitrophaceae" Species Implies Their Worldwide Reach in Manganese Chemolithoautotrophy. PMID:35285693
Genome-wide investigation of maize RAD51 binding affinity through phage display. PMID:35279087
Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus. PMID:35272716
Pangenomes as a Resource to Accelerate Breeding of Under-Utilised Crop Species. PMID:35269811
A Computational Text Mining-Guided Meta-Analysis Approach to Identify Potential Xerostomia Drug Targets. PMID:35268532
FlyBase: a guided tour of highlighted features. PMID:35266522
Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells. PMID:35236847
Phylogenetic analysis of forkhead transcription factors in the Panarthropoda. PMID:35230523
How to catch trends using MeSH terms analysis? PMID:35221395
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi. PMID:35212484
The first complete mitochondrial genome sequence of Cynopterusbrachyotis (Chiroptera, Pteropodidae) from the Philippines. PMID:35210914
Horizontal Transposon Transfer and Its Implications for the Ancestral Ecology of Hydrophiine Snakes. PMID:35205262
Perspectives in Sports Genomics. PMID:35203507
The Pet127 protein is a mitochondrial 5'-to-3' exoribonuclease from the PD-(D/E)XK superfamily involved in RNA maturation and intron degradation in yeasts. PMID:35197365
Use of nCounter mRNA profiling to identify at-arrival gene expression patterns for predicting bovine respiratory disease in beef cattle. PMID:35197051
Single molecule, long-read Apoer2 sequencing identifies conserved and species-specific splicing patterns. PMID:35192893
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules. PMID:35183110
The Neuropeptide-Related HERC5/TAC1 Interactions May Be Associated with the Dysregulation of lncRNA GAS5 Expression in Gestational Diabetes Mellitus Exosomes. PMID:35178132
Assembly and Annotation of Escherichia coli Bacteriophage U115. PMID:35175109
Covariance predicts conserved protein residue interactions important to the emergence and continued evolution of SARS-CoV-2 as a human pathogen. PMID:35169805
Strong selection and high mutation supply characterize experimental Chlorovirus evolution. PMID:35169490
Zebrafish information network, the knowledgebase for Danio rerio research. PMID:35166825
Are Cell Junctions Implicated in the Regulation of Vitellogenin Uptake? Insights from an RNAseq-Based Study in Eel, Anguilla australis. PMID:35159359
Neutral and adaptive drivers of genomic change in introduced brook trout (Salvelinus fontinalis) populations revealed by pooled sequencing. PMID:35154655
Network Pharmacology Analysis on the Mechanism of Huangqi Sijunzi Decoction in Treating Cancer-Related Fatigue. PMID:35154614
Evolution and conserved functionality of organ size and shape regulator PEAPOD. PMID:35148336
Predicted impact of the viral mutational landscape on the cytotoxic response against SARS-CoV-2. PMID:35143484
Phylogenetic Analysis of the SQUAMOSA Promoter-Binding Protein-Like Genes in Four Ipomoea Species and Expression Profiling of the IbSPLs During Storage Root Development in Sweet Potato (Ipomoea batatas). PMID:35126426
Mapping Critical Residues in ATG11's Coiled-Coil 2 Domain that Block Multiple Interactions and Disrupt Selective Autophagy. PMID:35118068
Weak Effect of Gypsy Retrotransposon Bursts on Sonneratia alba Salt Stress Gene Expression. PMID:35111190
SEQUENCE SLIDER: integration of structural and genetic data to characterize isoforms from natural sources. PMID:35104880
Dissemination Routes of Carbapenem and Pan-Aminoglycoside Resistance Mechanisms in Hospital and Urban Wastewater Canalizations of Ghana. PMID:35103490
Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated genes. PMID:35084301
A simple guide to de novo transcriptome assembly and annotation. PMID:35076693
ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements. PMID:35058462
Genome Sequences of Soft Rot-Causing Pectobacterium Isolates from Different Vegetables. PMID:35049346
Variational autoencoding of gene landscapes during mouse CNS development uncovers layered roles of Polycomb Repressor Complex 2. PMID:35048973
Improving Diabetes-Related Biomedical Literature Exploration in the Clinical Decision-making Process via Interactive Classification and Topic Discovery: Methodology Development Study. PMID:35040795
ClinGen Variant Curation Interface: a variant classification platform for the application of evidence criteria from ACMG/AMP guidelines. PMID:35039090
LYRUS: a machine learning model for predicting the pathogenicity of missense variants. PMID:35036922
An integrated in silico analysis highlighted angiogenesis regulating miRNA-mRNA network in PCOS pathophysiology. PMID:35032287
Use of metagenomic microbial source tracking to investigate the source of a foodborne outbreak of cryptosporidiosis. PMID:35024477
Whole-Genome Duplication and Host Genotype Affect Rhizosphere Microbial Communities. PMID:35014873
Novel 1,3,5-Triazinyl Aminobenzenesulfonamides Incorporating Aminoalcohol, Aminochalcone and Aminostilbene Structural Motifs as Potent Anti-VRE Agents, and Carbonic Anhydrases I, II, VII, IX, and XII Inhibitors. PMID:35008657
Oral Mucosa vs. Penile Skin Flap in Substitution Urethroplasty for Anterior Urethral Strictures: A Systematic Review and Meta-Analysis. PMID:35004838
Characterization of the complete mitochondrial genome of Aspergillus terricola (Aspergillaceae, Eurotiales), isolated from soy sauce fermentation system. PMID:34993316
Structural basis for effector recognition by an antibacterial type IV secretion system. PMID:34983846
Antibiotic-Efficient Genetic Cassette for the TEM-1 β-Lactamase That Improves Plasmid Performance. PMID:34982550
Construction of an IS-Free Corynebacterium glutamicum ATCC 13 032 Chassis Strain and Random Mutagenesis Using the Endogenous ISCg1 Transposase. PMID:34976962
Classification of COVID-19 and Other Pathogenic Sequences: A Dinucleotide Frequency and Machine Learning Approach. PMID:34976561
Unraveling unique and common cell type-specific mechanisms in glioblastoma multiforme. PMID:34976314
Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model Brachypodium Grasses. PMID:34961135
Genomic Analysis of the First European Bacteriophages with Depolymerase Activity and Biocontrol Efficacy against the Phytopathogen Ralstonia solanacearum. PMID:34960808
Systematic Analysis and Biochemical Characterization of the Caffeoyl Shikimate Esterase Gene Family in Poplar. PMID:34948162
Circadian key component CLOCK/BMAL1 interferes with segmentation clock in mouse embryonic organoids. PMID:34930826
G-Quadruplex DNA as a Target in Pathogenic Bacteria: Efficacy of an Extended Naphthalene Diimide Ligand and Its Mode of Action. PMID:34928608
RpoN/Sfa2-dependent activation of the Pseudomonas aeruginosa H2-T6SS and its cognate arsenal of antibacterial toxins. PMID:34928327
Evolutionary Stability Optimizer (ESO): A Novel Approach to Identify and Avoid Mutational Hotspots in DNA Sequences While Maintaining High Expression Levels. PMID:34928133
Complete Genome Sequences of Kinneretia sp. Strain XES5, Shinella sp. Strain XGS7, and Vogesella sp. Strain XCS3, Isolated from Xenopus laevis Skin. PMID:34913717
IFPTML Mapping of Drug Graphs with Protein and Chromosome Structural Networks vs. Pre-Clinical Assay Information for Discovery of Antimalarial Compounds. PMID:34884870
High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032. PMID:34867870
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees. PMID:34850870
CRISPRroots: on- and off-target assessment of RNA-seq data in CRISPR-Cas9 edited cells. PMID:34850137
Metagenomic discovery of CRISPR-associated transposons. PMID:34845024
Biochemical Characterization of Recombinant Isocitrate Dehydrogenase and Its Putative Role in the Physiology of an Acidophilic Micrarchaeon. PMID:34835444
A High Rate Algal Pond Hosting a Dynamic Community of RNA Viruses. PMID:34834969
Genetic Variability of the Functional Domains of Chromodomains Helicase DNA-Binding (CHD) Proteins. PMID:34828433
Integration and Visualization of Regulatory Elements and Variations of the EPAS1 Gene in Human. PMID:34828399
Assessing the nutritional consequences of switching foraging behavior in wood bison. PMID:34824819
The First Eight Mitogenomes of Leaf-Mining Dactylispa Beetles (Coleoptera: Chrysomelidae: Cassidinae) Shed New Light on Subgenus Relationships. PMID:34821805
Bacterial Sirtuins Overview: An Open Niche to Explore. PMID:34803965
Genome-wide differentially methylated genes associated with posttraumatic stress disorder and longitudinal change in methylation in rape survivors. PMID:34799556
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. PMID:34791415
CellPAINT: Turnkey Illustration of Molecular Cell Biology. PMID:34790910
Metagenomic Analysis of Biocide-Treated Neotropical Oil Reservoir Water Unveils Microdiversity of Thermophile Tepidiphilus. PMID:34790180
PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions. PMID:34788826
Structural and Functional Characterization of One Unclassified Glutathione S-Transferase in Xenobiotic Adaptation of Leptinotarsa decemlineata. PMID:34769352
SARS-CoV-2 Exposed Mesenchymal Stromal Cell from Congenital Pulmonary Airway Malformations: Transcriptomic Analysis and the Expression of Immunomodulatory Genes. PMID:34769246
FusionGDB 2.0: fusion gene annotation updates aided by deep learning. PMID:34755868
RESCRIPt: Reproducible sequence taxonomy reference database management. PMID:34748542
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research. PMID:34741192
Phylogenetic and Ancestral Sequence Reconstruction of SARS-CoV-2 Reveals Latent Capacity to Bind Human ACE2 Receptor. PMID:34739551
The Genomic Organization of the LILR Region Remained Largely Conserved Throughout Primate Evolution: Implications for Health And Disease. PMID:34737739
MCDB: A comprehensive curated mitotic catastrophe database for retrieval, protein sequence alignment, and target prediction. PMID:34729303
Iron Metabolism and Idiopathic Pulmonary Arterial Hypertension: New Insights from Bioinformatic Analysis. PMID:34722766
RNAPhaSep: a resource of RNAs undergoing phase separation. PMID:34718740
Structural and Evolutionary Insights Into the Binding of Host Receptors by the Rabies Virus Glycoprotein. PMID:34708003
Genome Streamlining, Plasticity, and Metabolic Versatility Distinguish Co-occurring Toxic and Nontoxic Cyanobacterial Strains of Microcoleus. PMID:34700377
Screening Potential Drugs for COVID-19 Based on Bound Nuclear Norm Regularization. PMID:34691157
Screening of β1- and β2-Adrenergic Receptor Modulators through Advanced Pharmacoinformatics and Machine Learning Approaches. PMID:34681845
FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow. PMID:34681040
Dissection of Highly Prevalent qnrS1-Carrying IncX Plasmid Types in Commensal Escherichia coli from German Food and Livestock. PMID:34680816
Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition. PMID:34673281
Regulation of intestinal immunity and tissue repair by enteric glia. PMID:34671159
Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication. PMID:34635656
Differences in the dynamics of the tandem-SH2 modules of the Syk and ZAP-70 tyrosine kinases. PMID:34601763
Metagenomic investigation of potential abortigenic pathogens in foetal tissues from Australian horses. PMID:34600470
The Key Ingredient Acacetin in Weishu Decoction Alleviates Gastrointestinal Motility Disorder Based on Network Pharmacology Analysis. PMID:34594156
Assembly and Annotation of the Complete Genome Sequence of T4-Like Bacteriophage 132. PMID:34591682
Gene Dosage Analysis on the Single-Cell Transcriptomes Linking Cotranslational Protein Targeting to Metastatic Triple-Negative Breast Cancer. PMID:34577617
Elucidating the Effects of Curcumin against Influenza Using In Silico and In Vitro Approaches. PMID:34577580
Biodegradation Potential and Putative Catabolic Genes of Culturable Bacteria from an Alpine Deciduous Forest Site. PMID:34576815
C5a Activates a Pro-Inflammatory Gene Expression Profile in Human Gaucher iPSC-Derived Macrophages. PMID:34576075
Adaptation of Fig Wasps (Agaodinae) to Their Host Revealed by Large-Scale Transcriptomic Data. PMID:34564255
Genomic Characterization of a Nalidixic Acid-Resistant Salmonella Enteritidis Strain Causing Persistent Infections in Broiler Chickens. PMID:34540936
NaCT/SLC13A5 facilitates citrate import and metabolism under nutrient-limited conditions. PMID:34525352
KCTD15 deregulation is associated with alterations of the NF-κB signaling in both pathological and physiological model systems. PMID:34521919
The first complete mitochondrial genome of mushroom Leucoagaricus naucinus (Agaricaceae, Agaricales) and insights into its phylogeny. PMID:34514133
Protein function prediction with gene ontology: from traditional to deep learning models. PMID:34513334
Taxonomic bias in AMP prediction of invertebrate peptides. PMID:34504226
Vision, challenges and opportunities for a Plant Cell Atlas. PMID:34491200
How do I get the most out of my protein sequence using bioinformatics tools? PMID:34473083
Assessing the Resolution of Methyltransferase-Mediated DNA Optical Mapping. PMID:34471732
Structure of the human marker of self 5-transmembrane receptor CD47. PMID:34471125
Two novel mutations in exon 2 of bone morphogenetic protein (BMP) 15 gene in Pakistani infertile females. PMID:34466116
The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes. PMID:34458527
Persistence of Multiple Paramyxoviruses in a Closed Captive Colony of Fruit Bats (Eidolon helvum). PMID:34452523
Adaptations for Pressure and Temperature in Dihydrofolate Reductases. PMID:34442785
Metatranscriptomic Analysis of Bacterial Communities on Laundered Textiles: A Pilot Case Study. PMID:34442670
An Update on Trichoderma Mitogenomes: Complete De Novo Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma harzianum (Hypocreales, Sordariomycetes), an Ex-Neotype Strain CBS 226.95, and Tracing the Evolutionary Divergences of Mitogenomes in Trichoderma. PMID:34442643
Phagotrophic Protists and Their Associates: Evidence for Preferential Grazing in an Abiotically Driven Soil Ecosystem. PMID:34442632
Expanding the Search for Sperm Transmission Elements in the Mitochondrial Genomes of Bivalve Mollusks. PMID:34440385
hnRNP A/B Proteins: An Encyclopedic Assessment of Their Roles in Homeostasis and Disease. PMID:34439945
Development of Novel PCR Assays for Improved Detection of Enterovirus D68. PMID:34432489
Determination of variable region sequences from hybridoma immunoglobulins that target Mycobacterium tuberculosis virulence factors. PMID:34415957
Identification of Three Clf-Sdr Subfamily Proteins in Staphylococcus warneri, and Comparative Genomics Analysis of a Locus Encoding CWA Proteins in Staphylococcus Species. PMID:34394031
Sequence-specific dynamics of DNA response elements and their flanking sites regulate the recognition by AP-1 transcription factors. PMID:34387667
Identification and Genomic Characterization of Two Previously Unknown Magnetotactic Nitrospirae. PMID:34385986
Acquired JAK2 mutations confer resistance to JAK inhibitors in cell models of acute lymphoblastic leukemia. PMID:34376782
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation. PMID:34372938
Volatile emission and biosynthesis in endophytic fungi colonizing black poplar leaves. PMID:34367348
Novel Purine Chemotypes with Activity against Plasmodium falciparum and Trypanosoma cruzi. PMID:34358064
Sorghum's Whole-Plant Transcriptome and Proteome Responses to Drought Stress: A Review. PMID:34357076
Presence of Lactic Acid Bacteria in the Intestinal Tract of the Mediterranean Trout (Salmo macrostigma) in Its Natural Environment. PMID:34357039
IntSplice2: Prediction of the Splicing Effects of Intronic Single-Nucleotide Variants Using LightGBM Modeling. PMID:34349788
Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis. PMID:34342541
A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. PMID:34332124
Unwinding the roles of RNA helicase MOV10. PMID:34327836
Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea. PMID:34285362
Identification of a novel filovirus in a common lancehead (Bothrops atrox (Linnaeus, 1758)). PMID:34275961
Crk adaptor proteins are necessary for the development of the zebrafish retina. PMID:34268820
Hierarchical cluster analysis in the study of the effect of cytokine expression patterns on endometrial repair and receptivity after hysteroscopic adhesiolysis. PMID:34268359
The tweety Gene Family: From Embryo to Disease. PMID:34262434
Genes involved in immune, gene translation and chromatin organization pathways associated with Mycoplasma ovipneumoniae presence in nasal secretions of domestic sheep. PMID:34252097
Detection of novel sequence types and zoonotic transmission potentiality among strains of Shiga toxigenic Escherichia coli (STEC) from dairy calves, animal handlers and associated environments. PMID:34241826
Pathogenic Vibrio Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes. PMID:34227831
An immunoinformatics approach to design a multi-epitope vaccine against Mycobacterium tuberculosis exploiting secreted exosome proteins. PMID:34226593
Corynebacterium glutamicum Regulation beyond Transcription: Organizing Principles and Reconstruction of an Extended Regulatory Network Incorporating Regulations Mediated by Small RNA and Protein-Protein Interactions. PMID:34203422
Nucleic Acid Testing of SARS-CoV-2. PMID:34200331
Stepwise target controllability identifies dysregulations of macrophage networks in multiple sclerosis. PMID:34189368
Identification of a self-sufficient cytochrome P450 monooxygenase from Cupriavidus pinatubonensis JMP134 involved in 2-hydroxyphenylacetic acid catabolism, via homogentisate pathway. PMID:34156761
Analyzing Metabolic States of Adipogenic and Osteogenic Differentiation in Human Mesenchymal Stem Cells via Genome Scale Metabolic Model Reconstruction. PMID:34150750
Peptides of H. sapiens and P. falciparum that are predicted to bind strongly to HLA-A*24:02 and homologous to a SARS-CoV-2 peptide. PMID:34146538
DGLinker: flexible knowledge-graph prediction of disease-gene associations. PMID:34125897
Molecular characterization and expression analysis of ribosomal L18/L5e gene in Pennisetum glaucum (L.) R. Br. PMID:34121902
Pseudomonas Strains Induce Transcriptional and Morphological Changes and Reduce Root Colonization of Verticillium spp. PMID:34108946
Potential G-quadruplexes and i-Motifs in the SARS-CoV-2. PMID:34101725
Proteomics-Based Insights Into the SARS-CoV-2-Mediated COVID-19 Pandemic: A Review of the First Year of Research. PMID:34089862
Single-nucleotide conservation state annotation of the SARS-CoV-2 genome. PMID:34083758
MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO. PMID:34083448
Comparative Analysis of Mitochondrial Genome Features among Four Clonostachys Species and Insight into Their Systematic Positions in the Order Hypocreales. PMID:34073831
Molecular Diagnosis of Koala Retrovirus (KoRV) in South Australian Koalas (Phascolarctos cinereus). PMID:34065572
Transcriptome analysis reveals potential function of long non-coding RNAs in 20-hydroxyecdysone regulated autophagy in Bombyx mori. PMID:34022797
Scaffold compound L971 exhibits anti-inflammatory activities through inhibition of JAK/STAT and NFκB signalling pathways. PMID:34018320
Identity and compatibility of reference genome resources. PMID:34017945
COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model. PMID:34015823
ExVe: The knowledge base of orthologous proteins identified in fungal extracellular vesicles. PMID:33995920
Widespread distribution of hmf genes in Proteobacteria reveals key enzymes for 5-hydroxymethylfurfural conversion. PMID:33995910
Risk HLA alleles in South America and potential new epitopes for SARS-CoV2. PMID:33972137
Updates to HCOP: the HGNC comparison of orthology predictions tool. PMID:33959747
HIV-1 Infection Alters the Viral Composition of Plasma in Men Who Have Sex with Men. PMID:33952659
A Human Endogenous Bornavirus-Like Nucleoprotein Encodes a Mitochondrial Protein Associated with Cell Viability. PMID:33952640
Learning a genome-wide score of human-mouse conservation at the functional genomics level. PMID:33941776
The transcriptome profile of human trisomy 21 blood cells. PMID:33933170
Stepwise pathogenic evolution of Mycobacterium abscessus. PMID:33926925
Isolation and Characterization of Human Colon Adenocarcinoma Stem-Like Cells Based on the Endogenous Expression of the Stem Markers. PMID:33925224
Mining Synergistic Microbial Interactions: A Roadmap on How to Integrate Multi-Omics Data. PMID:33920040
High Rates of Genome Rearrangements and Pathogenicity of Shigella spp. PMID:33912145
M6ADD: a comprehensive database of m6A modifications in diseases. PMID:33906563
Hydrogen as a Co-electron Donor for Chain Elongation With Complex Communities. PMID:33898406
Host phylogeny and host ecology structure the mammalian gut microbiota at different taxonomic scales. PMID:33892813
Asexuality Associated with Marked Genomic Expansion of Tandemly Repeated rRNA and Histone Genes. PMID:33885820
Host barriers to SARS-CoV-2 demonstrated by ferrets in a high-exposure domestic setting. PMID:33858941
Eudiplozoon nipponicum (Monogenea, Diplozoidae) and its adaptation to haematophagy as revealed by transcriptome and secretome profiling. PMID:33858339
The gut virome of healthy children during the first year of life is diverse and dynamic. PMID:33852569
Free-Living, Psychrotrophic Bacteria of the Genus Psychrobacter Are Descendants of Pathobionts. PMID:33850039
Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users. PMID:33849055
Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments. PMID:33846529
Genome-wide discovery of G-quadruplexes in barley. PMID:33846409
Comparison of Current Methods for Signal Peptide Prediction in Phytoplasmas. PMID:33841387
Converting single nucleotide variants between genome builds: from cautionary tale to solution. PMID:33822888
A Holistic Evolutionary and 3D Pharmacophore Modelling Study Provides Insights into the Metabolism, Function, and Substrate Selectivity of the Human Monocarboxylate Transporter 4 (hMCT4). PMID:33805725
Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli. PMID:33799479
Analysis of SARS-CoV-2 genomic epidemiology reveals disease transmission coupled to variant emergence and allelic variation. PMID:33795722
Complete Genome Sequence of Escherichia coli Bacteriophage U136B. PMID:33795337
Building blocks and blueprints for bacterial autolysins. PMID:33793553
Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals. PMID:33753763
Integrated intra- and intercellular signaling knowledge for multicellular omics analysis. PMID:33749993
Stable Recombinant-Gene Expression from a Ligilactobacillus Live Bacterial Vector via Chromosomal Integration. PMID:33741626
Fast and sensitive taxonomic assignment to metagenomic contigs. PMID:33734313
Molecular storytelling for online structural biology outreach and education. PMID:33728361
Microglial trogocytosis and the complement system regulate axonal pruning in vivo. PMID:33724186
Significant non-existence of sequences in genomes and proteomes. PMID:33693858
Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis. PMID:33688005
Dihydrouridine synthesis in tRNAs is under reductive evolution in Mollicutes. PMID:33685366
Vector incrimination and transmission of avian malaria at an aquarium in Japan: mismatch in parasite composition between mosquitoes and penguins. PMID:33676517
Mutant Huntingtin stalls ribosomes and represses protein synthesis in a cellular model of Huntington disease. PMID:33674575
Control of Cell Growth and Proliferation by the Tribbles Pseudokinase: Lessons from Drosophila. PMID:33672471
Bispecific antibodies targeting mutant RAS neoantigens. PMID:33649101
An update of KAIKObase, the silkworm genome database. PMID:33645624
G1 point mutation in growth differentiation factor 9 gene affects litter size in Sudanese desert sheep. PMID:33642793
The ORF8 protein of SARS-CoV-2 induced endoplasmic reticulum stress and mediated immune evasion by antagonizing production of interferon beta. PMID:33626380
Characterization and complete genome sequence of Privateer, a highly prolate Proteus mirabilis podophage. PMID:33614267
Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution. PMID:33614159
The population genetics of nonmigratory Allen's Hummingbird (Selasphorus sasin sedentarius) following a recent mainland colonization. PMID:33614008
Enrichment analyses of diseases and pathways associated with precocious puberty using PrecocityDB. PMID:33602974
INSIGHT: A population-scale COVID-19 testing strategy combining point-of-care diagnosis with centralized high-throughput sequencing. PMID:33579697
Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction. PMID:33566096
In silico identification of natural products from Traditional Chinese Medicine for cancer immunotherapy. PMID:33558586
Elevated gut microbiome abundance of Christensenellaceae, Porphyromonadaceae and Rikenellaceae is associated with reduced visceral adipose tissue and healthier metabolic profile in Italian elderly. PMID:33557667
HIV-1 Infection Transcriptomics: Meta-Analysis of CD4+ T Cells Gene Expression Profiles. PMID:33557210
Distinct clonal lineages and within-host diversification shape invasive Staphylococcus epidermidis populations. PMID:33544760
Jknull alleles in two patients with anti-Jk3. PMID:33539287
Prognostic significance of esterase gene expression in multiple myeloma. PMID:33531688
Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial. PMID:33499974
Comparison of Blood Bacterial Communities in Periodontal Health and Periodontal Disease. PMID:33469518
Crystal structure of steroid reductase SRD5A reveals conserved steroid reduction mechanism. PMID:33469028
Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins. PMID:33446856
A Novel N4-Like Bacteriophage Isolated from a Wastewater Source in South India with Activity against Several Multidrug-Resistant Clinical Pseudomonas aeruginosa Isolates. PMID:33441405
A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates. PMID:33436653
Secrete or perish: The role of secretion systems in Xanthomonas biology. PMID:33425257
The iPPI-DB initiative: A Community-centered database of Protein-Protein Interaction modulators. PMID:33416858
Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers. PMID:33415441
Phage infection and sub-lethal antibiotic exposure mediate Enterococcus faecalis type VII secretion system dependent inhibition of bystander bacteria. PMID:33411815
Molecular Dynamics Simulation of T10609C and C10676G Mutations of Mitochondrial ND4L Gene Associated With Proton Translocation in Type 2 Diabetes Mellitus and Cataract Patients. PMID:33402819
Disome-seq reveals widespread ribosome collisions that promote cotranslational protein folding. PMID:33402206
Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin Populations. PMID:33396801
Atlas of ACE2 gene expression reveals novel insights into transmission of SARS-CoV-2. PMID:33392409
An Educational Bioinformatics Project to Improve Genome Annotation. PMID:33365016
CRISPR Arrays Away from cas Genes. PMID:33346707
A Rab escort protein regulates the MAPK pathway that controls filamentous growth in yeast. PMID:33335117
Differential Expression and Bioinformatics Analysis of circRNA in Non-small Cell Lung Cancer. PMID:33329727
Large expert-curated database for benchmarking document similarity detection in biomedical literature search. PMID:33326193
The Two TpsB-Like Proteins in Anabaena sp. Strain PCC 7120 Are Involved in Secretion of Selected Substrates. PMID:33257527
Prediction of the incubation period for COVID-19 and future virus disease outbreaks. PMID:33256718
Virulence characterization and comparative genomics of Listeria monocytogenes sequence type 155 strains. PMID:33256601
Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral Astrangia poculata along the Mid-Atlantic United States. PMID:33240603
Modeling a co-culture of Clostridium autoethanogenum and Clostridium kluyveri to increase syngas conversion to medium-chain fatty-acids. PMID:33240469
Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV). PMID:33239395
Comparative analyses and structural insights of new class glutathione transferases in Cryptosporidium species. PMID:33230237
FlyBase: updates to the Drosophila melanogaster knowledge base. PMID:33219682
LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements. PMID:33219661
BRENDA, the ELIXIR core data resource in 2021: new developments and updates. PMID:33211880
Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters. PMID:33199808
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801
Comparative Genomics within and across Bilaterians Illuminates the Evolutionary History of ALK and LTK Proto-Oncogene Origination and Diversification. PMID:33196781
Mitogenomes of Two Phallus Mushroom Species Reveal Gene Rearrangement, Intron Dynamics, and Basidiomycete Phylogeny. PMID:33193177
Avian Immunome DB: an example of a user-friendly interface for extracting genetic information. PMID:33176685
Bioinformatics-Based Activities in High School: Fostering Students' Literacy, Interest, and Attitudes on Gene Regulation, Genomics, and Evolution. PMID:33162959
Identifying Cancer-Relevant Mutations in the DLC START Domain Using Evolutionary and Structure-Function Analyses. PMID:33142932
Evolution of the Brassicaceae-specific MS5-Like family and neofunctionalization of the novel MALE STERILITY 5 gene essential for male fertility in Brassica napus. PMID:33128826
Molecular Evidence for an Active Microbial Methane Cycle in Subsurface Serpentinite-Hosted Groundwaters in the Samail Ophiolite, Oman. PMID:33127818
Acidification decreases microbial community diversity in the Salish Sea, a region with naturally high pCO2. PMID:33112901
Identification of Novel Interspersed DNA Repetitive Elements in the Trypanosoma cruzi Genome Associated with the 3'UTRs of Surface Multigenic Families. PMID:33096822
MeDAS: a Metazoan Developmental Alternative Splicing database. PMID:33084905
MNK2 governs the macrophage antiinflammatory phenotype. PMID:33077599
RBUD: A New Functional Potential Analysis Approach for Whole Microbial Genome Shotgun Sequencing. PMID:33050530
Automated download and clean-up of family-specific databases for kmer-based virus identification. PMID:33031509
Reanalysis of Gene Expression Profiles of CD4+ T Cells Treated with HIV-1 Latency Reversal Agents. PMID:33007800
Strain-specific strategies of 2'-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697. PMID:32985563
Comparative Genome Analysis and Phenotypic Characterization of Clostridium gasigenes CGAS001 Isolated From Chilled Vacuum-Packed Lamb Meat. PMID:32983035
Comparative Analysis of the Secretome and Interactome of Trypanosoma cruzi and Trypanosoma rangeli Reveals Species Specific Immune Response Modulating Proteins. PMID:32973747
A possible universal role for mRNA secondary structure in bacterial translation revealed using a synthetic operon. PMID:32973167
Construction of a chromosome-scale long-read reference genome assembly for potato. PMID:32964225
An unusual type I ribosome-inactivating protein from Agrostemma githago L. PMID:32958800
Human SIRT1 Multispecificity Is Modulated by Active-Site Vicinity Substitutions during Natural Evolution. PMID:32956445
COVID-19 Biomarkers in research: Extension of the OncoMX cancer biomarker data model to capture biomarker data from other diseases. PMID:32935101
Molecular basis of a new ovine model for human 3M syndrome-2. PMID:32933480
A case study of salivary microbiome in smokers and non-smokers in Hungary: analysis by shotgun metagenome sequencing. PMID:32922678
How to use the MEROPS database and website to help understand peptidase specificity. PMID:32920969
Community composition of arctic root-associated fungi mirrors host plant phylogeny. PMID:32918451
The structure of the Moco carrier protein from Rippkaea orientalis. PMID:32880594
PINCER: improved CRISPR/Cas9 screening by efficient cleavage at conserved residues. PMID:32821942
Sequence alignment generation using intermediate sequence search for homology modeling. PMID:32802276
Unravelling the diversity of magnetotactic bacteria through analysis of open genomic databases. PMID:32737307
A Computational Approach to Identify Potential Novel Inhibitors against the Coronavirus SARS-CoV-2. PMID:32721082
Comparative transcriptomics of primary cells in vertebrates. PMID:32718981
Understanding leptospirosis eco-epidemiology by environmental DNA metabarcoding of irrigation water from two agro-ecological regions of Sri Lanka. PMID:32701971
Single-nucleotide conservation state annotation of the SARS-CoV-2 genome. PMID:32699851
LINC00511 as a prognostic biomarker for human cancers: a systematic review and meta-analysis. PMID:32698787
Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids. PMID:32681114
RNA-GPS Predicts SARS-CoV-2 RNA Residency to Host Mitochondria and Nucleolus. PMID:32673562
Comparative mitogenome analysis of two ectomycorrhizal fungi (Paxillus) reveals gene rearrangement, intron dynamics, and phylogeny of basidiomycetes. PMID:32670777
Simiao Decoction Alleviates Gouty Arthritis by Modulating Proinflammatory Cytokines and the Gut Ecosystem. PMID:32670069
Bacterial chemolithoautotrophy via manganese oxidation. PMID:32669693
Reconstruction of the Carbohydrate 6-O Sulfotransferase Gene Family Evolution in Vertebrates Reveals Novel Member, CHST16, Lost in Amniotes. PMID:32652010
Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168. PMID:32629984
A CLN6-CLN8 complex recruits lysosomal enzymes at the ER for Golgi transfer. PMID:32597833
Dealing with aflatoxin B1 dihydrodiol acute effects: Impact of aflatoxin B1-aldehyde reductase enzyme activity in poultry species tolerant to AFB1 toxic effects. PMID:32569334
Rapid diversification of wild social groups driven by toxin-immunity loci on mobile genetic elements. PMID:32565537
Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean. PMID:32546674
Genomic Signatures of Local Adaptation in Clam Shrimp (Eulimnadia texana) from Natural Vernal Pools. PMID:32539143
Genomic insights into a plant growth-promoting Pseudomonas koreensis strain with cyclic lipopeptide-mediated antifungal activity. PMID:32537904
Genome-wide analysis of expression quantitative trait loci (eQTLs) reveals the regulatory architecture of gene expression variation in the storage roots of sweet potato. PMID:32528702
Shotgun sequencing of honey DNA can describe honey bee derived environmental signatures and the honey bee hologenome complexity. PMID:32518251
The effect of phytoglobin overexpression on the plant proteome during nonhost response of barley (Hordeum vulgare) to wheat powdery mildew (Blumeria graminis f. sp. tritici). PMID:32513937
RNA-GPS Predicts SARS-CoV-2 RNA Localization to Host Mitochondria and Nucleolus. PMID:32511373
Comprehensive exploration of the translocation, stability and substrate recognition requirements in VIM-2 lactamase. PMID:32510322
Could the Heat Shock Proteins 70 Family Members Exacerbate the Immune Response in Multiple Sclerosis? An in Silico Study. PMID:32503176
Impact of Short-Term Isoflavone Intervention in Polycystic Ovary Syndrome (PCOS) Patients on Microbiota Composition and Metagenomics. PMID:32492805
The Inactivation of Enzymes Belonging to the Central Carbon Metabolism Is a Novel Mechanism of Developing Antibiotic Resistance. PMID:32487742
Comparative Genomics and Metabolomics in the Genus Nocardia. PMID:32487740
Molecular signature of eutopic endometrium in endometriosis based on the multi-omics integrative synthesis. PMID:32474803
Complete Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma atroviride: Genomic Features, Comparative Analysis and Insight Into the Mitochondrial Evolution in Trichoderma. PMID:32457712
A Reference Genome of Bursaphelenchus mucronatus Provides New Resources for Revealing Its Displacement by Pinewood Nematode. PMID:32438771
Maternal Protein Restriction in Rats Alters the Expression of Genes Involved in Mitochondrial Metabolism and Epitranscriptomics in Fetal Hypothalamus. PMID:32438566
Consensus Design of an Evolved High-Redox Potential Laccase. PMID:32435637
Tools for successful proliferation: diverse strategies of nutrient acquisition by a benthic cyanobacterium. PMID:32424245
Ancestral Resurrection and Directed Evolution of Fungal Mesozoic Laccases. PMID:32414792
Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum subsp. infantis from a Glycoside Hydrolase Perspective. PMID:32413974
Nitrogen Substrate Utilization in Three Rhizosphere Bacterial Strains Investigated Using Proteomics. PMID:32411116
Proton-Electron Transfer to the Active Site Is Essential for the Reaction Mechanism of Soluble Δ9-Desaturase. PMID:32406236
Carbon monoxide-dependent transcriptional changes in a thermophilic, carbon monoxide-utilizing, hydrogen-evolving bacterium Calderihabitans maritimus KKC1 revealed by transcriptomic analysis. PMID:32388815
Polygenic risk scores indicates genetic overlap between peripheral pain syndromes and chronic postsurgical pain. PMID:32377986
Molecular and Clinical Relevance of ZBTB38 Expression Levels in Prostate Cancer. PMID:32365491
Osteoking improves OP rat by enhancing HSP90‑β expression. PMID:32323753
Genome-Wide Discovery of G-Quadruplexes in Wheat: Distribution and Putative Functional Roles. PMID:32295768
Empowering Retinal Gene Therapy with a Specific Promoter for Human Rod and Cone ON-Bipolar Cells. PMID:32258214
Genomic Structure, Evolutionary Origins, and Reproductive Function of a Large Amplified Intrinsically Disordered Protein-Coding Gene on the X Chromosome (Laidx) in Mice. PMID:32253194
Bioinformatic prospecting and phylogenetic analysis reveals 94 undescribed circular bacteriocins and key motifs. PMID:32252629
An integrated approach to unravel a crucial structural property required for the function of the insect steroidogenic Halloween protein Noppera-bo. PMID:32241910
Targeted assemblies of cas1 suggest CRISPR-Cas's response to soil warming. PMID:32221408
Whole Genome Sequences of 23 Species from the Drosophila montium Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses. PMID:32220952
The pharmacological chaperone N-n-butyl-deoxygalactonojirimycin enhances β-galactosidase processing and activity in fibroblasts of a patient with infantile GM1-gangliosidosis. PMID:32219518
Identification and engineering of 32 membered antifungal macrolactone notonesomycins. PMID:32192516
Flavodoxins as Novel Therapeutic Targets against Helicobacter pylori and Other Gastric Pathogens. PMID:32164177
High-resolution modeling of the selection on local mRNA folding strength in coding sequences across the tree of life. PMID:32151272
The Hypoxic Proteome and Metabolome of Barley (Hordeum vulgare L.) with and without Phytoglobin Priming. PMID:32102473
Discovering and interpreting transcriptomic drivers of imaging traits using neural networks. PMID:32101278
An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms. PMID:32055857
A survey of TIR domain sequence and structure divergence. PMID:32002590
Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant Viruses. PMID:31996429
Refgenie: a reference genome resource manager. PMID:31995185
Mechanical forces induce an asthma gene signature in healthy airway epithelial cells. PMID:31969610
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species. PMID:31883524
Tomato RNA-seq Data Mining Reveals the Taxonomic and Functional Diversity of Root-Associated Microbiota. PMID:31878183
The Occurrence and Characterization of Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli Isolated from Clinical Diagnostic Specimens of Equine Origin. PMID:31877788
Computational discovery of hidden breaks in 28S ribosomal RNAs across eukaryotes and consequences for RNA Integrity Numbers. PMID:31863008
Profusion of G-quadruplexes on both subunits of metazoan ribosomes. PMID:31834895
TRANSNAP: a web database providing comprehensive information on Japanese pear transcriptome. PMID:31831861
Complete Mitogenome of a Leaf-Mining Buprestid Beetle, Trachys auricollis, and Its Phylogenetic Implications. PMID:31805706
Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.). PMID:31803533
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID:31799603
An Integrated Model of Minor Intron Emergence and Conservation. PMID:31798628
ClinVar: improvements to accessing data. PMID:31777943
The Immune Epitope Database and Analysis Resource Program 2003-2018: reflections and outlook. PMID:31761977
Self-identity barcodes encoded by six expansive polymorphic toxin families discriminate kin in myxobacteria. PMID:31744876
A Network Analysis of Epigenetic and Transcriptional Regulation in a Neurodevelopmental Rat Model of Schizophrenia With Implications for Translational Research. PMID:31738422
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome. PMID:31730850
mPies: a novel metaproteomics tool for the creation of relevant protein databases and automatized protein annotation. PMID:31727118
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform. PMID:31713623
LncTarD: a manually-curated database of experimentally-supported functional lncRNA-target regulations in human diseases. PMID:31713618
A Standard Numbering Scheme for Class C β-Lactamases. PMID:31712217
Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling. PMID:31701028
High Flux Through the Oxidative Pentose Phosphate Pathway Lowers Efficiency in Developing Camelina Seeds. PMID:31699846
Fungal Adaptation to the Advanced Stages of Wood Decomposition: Insights from the Steccherinum ochraceum. PMID:31694151
PDBe: improved findability of macromolecular structure data in the PDB. PMID:31691821
Prokaryotic Genome Expansion Is Facilitated by Phages and Plasmids but Impaired by CRISPR. PMID:31681190
NPInter v4.0: an integrated database of ncRNA interactions. PMID:31670377
Gene4Denovo: an integrated database and analytic platform for de novo mutations in humans. PMID:31642496
Small Klebsiella pneumoniae Plasmids: Neglected Contributors to Antibiotic Resistance. PMID:31616398
Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives. PMID:31614509
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes. PMID:31584075
Quantitative methods for metabolomic analyses evaluated in the Children's Health Exposure Analysis Resource (CHEAR). PMID:31548623
Characterization of LysBC17, a Lytic Endopeptidase from Bacillus cereus. PMID:31546935
Lactulose drives a reversible reduction and qualitative modulation of the faecal microbiota diversity in healthy dogs. PMID:31527716
Computational and experimental analysis of the glycophosphatidylinositol-anchored proteome of the human parasitic nematode Brugia malayi. PMID:31513600
Baseline human gut microbiota profile in healthy people and standard reporting template. PMID:31509535
Duplication history and molecular evolution of the rbcS multigene family in angiosperms. PMID:31498865
VARIDT 1.0: variability of drug transporter database. PMID:31495872
Data Mining Approach for Extraction of Useful Information About Biologically Active Compounds from Publications. PMID:31453694
Botryane terpenoids produced by Nemania bipapillata, an endophytic fungus isolated from red alga Asparagopsis taxiformis - Falkenbergia stage. PMID:31444403
Disease classification via gene network integrating modules and pathways. PMID:31417727
Origins of peptidases. PMID:31377195
Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms. PMID:31353404
Genomics analysis of genes encoding respiratory burst oxidase homologs (RBOHs) in jatropha and the comparison with castor bean. PMID:31338257
Biophysical characterization and molecular phylogeny of human KIN protein. PMID:31309277
Analysis of genetically driven alternative splicing identifies FBXO38 as a novel COPD susceptibility gene. PMID:31269066
Computational Systems Pharmacology-Target Mapping for Fentanyl-Laced Cocaine Overdose. PMID:31257858
A large interactive visual database of copy number variants discovered in taurine cattle. PMID:31241156
Evolution of protein kinase substrate recognition at the active site. PMID:31233486
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures. PMID:31218344
HOTAIR as a Prognostic Predictor for Diverse Human Cancers: A Meta- and Bioinformatics Analysis. PMID:31195674
Arabidopsis thaliana organelles mimic the T7 phage DNA replisome with specific interactions between Twinkle protein and DNA polymerases Pol1A and Pol1B. PMID:31170927
Human protein-coding genes and gene feature statistics in 2019. PMID:31164174
Recent trends in molecular diagnostics of yeast infections: from PCR to NGS. PMID:31158289
Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration. PMID:31101000
Tissue-specific genes as an underutilized resource in drug discovery. PMID:31076736
Human COQ10A and COQ10B are distinct lipid-binding START domain proteins required for coenzyme Q function. PMID:31048406
Linear B Cell Epitopes Derived from the Multifunctional Surface Lipoprotein BBK32 as Targets for the Serodiagnosis of Lyme Disease. PMID:31043513
Molecular Evolution of Pseudomonas syringae Type III Secreted Effector Proteins. PMID:31024592
In silico Approach for Unveiling the Glycoside Hydrolase Activities in Faecalibacterium prausnitzii Through a Systematic and Integrative Large-Scale Analysis. PMID:31024464
Environmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in leptospirosis-endemic areas of Japan. PMID:31024059
DNAmod: the DNA modification database. PMID:31016417
Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance. PMID:30976326
Microbial community design: methods, applications, and opportunities. PMID:30952088
Advancing Computational Toxicology in the Big Data Era by Artificial Intelligence: Data-Driven and Mechanism-Driven Modeling for Chemical Toxicity. PMID:30907586
Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling. PMID:30875926
Automated exploration of gene ontology term and pathway networks with ClueGO-REST. PMID:30847467
DAKB-GPCRs: An Integrated Computational Platform for Drug Abuse Related GPCRs. PMID:30835466
Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae. PMID:30832565
Conserved Glycines Control Disorder and Function in the Cold-Regulated Protein, COR15A. PMID:30832369
Generation of a cleaned dataset listing Avon Longitudinal Study of Parents And Children peer-reviewed publications to 2015. PMID:30828646
Genes, Cells and Brain Areas of Intelligence. PMID:30828294
Draft genome sequence of Enterococcus faecium SP15, a potential probiotic strain isolated from spring water. PMID:30795795
Gastric Helicobacter pylori infection perturbs human oral microbiota. PMID:30713820
Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases. PMID:30705673
Complete Genome Sequence of Microbacterium sp. Strain 10M-3C3, Isolated from an Extremely Phosphorus-Poor Lake. PMID:30701259
Urotensin-related gene transcripts mark developmental emergence of the male forebrain vocal control system in songbirds. PMID:30692609
Harnessed viruses in the age of metagenomics and synthetic biology: an update on infectious clone assembly and biotechnologies of plant viruses. PMID:30677208
Sirtilins - the new old members of the vitamin K-dependent coagulation factor family. PMID:30644641
Genomic Insights into the Rice Blast Fungus through Estimation of Gene Emergence Time in Phylogenetic Context. PMID:30637144
Characterization and Genomic Analysis of SFPH2, a Novel T7virus Infecting Shigella. PMID:30619123
RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes. PMID:30583062
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. PMID:30576492
Metabolomics and 16S rRNA sequencing of human colorectal cancers and adjacent mucosa. PMID:30576312
Polyphyly in 16S rRNA-based LVTree Versus Monophyly in Whole-genome-based CVTree. PMID:30550857
Recent Trends in System-Scale Integrative Approaches for Discovering Protective Antigens Against Mycobacterial Pathogens. PMID:30538722
Comparative genomics of HORMA domain-containing proteins in prokaryotes and eukaryotes. PMID:30488757
Characterisation of the British honey bee metagenome. PMID:30478343
Open Targets Platform: new developments and updates two years on. PMID:30462303
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins. PMID:30445541
WebNetCoffee: a web-based application to identify functionally conserved proteins from Multiple PPI networks. PMID:30419809
Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers. PMID:30407549
The UCSC Genome Browser database: 2019 update. PMID:30407534
BRENDA in 2019: a European ELIXIR core data resource. PMID:30395242
iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains. PMID:30380109
TPMCalculator: one-step software to quantify mRNA abundance of genomic features. PMID:30379987
Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature. PMID:30379893
Genetic characterization of Y-chromosomal STRs in Hazara ethnic group of Pakistan and confirmation of DYS448 null allele. PMID:30377775
Gene Essentiality Analyzed by In Vivo Transposon Mutagenesis and Machine Learning in a Stable Haploid Isolate of Candida albicans. PMID:30377286
Analysis Tools for Large Connectomes. PMID:30374293
iDog: an integrated resource for domestic dogs and wild canids. PMID:30371881
GenBank. PMID:30365038
Database Resources of the BIG Data Center in 2019. PMID:30365034
The Immune Epitope Database (IEDB): 2018 update. PMID:30357391
CMAUP: a database of collective molecular activities of useful plants. PMID:30357356
Two novel temperate bacteriophages infecting Streptococcus pyogenes: Their genomes, morphology and stability. PMID:30339682
CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs. PMID:30285246
Mucosal-associated invariant and γδ T cell subsets respond to initial Mycobacterium tuberculosis infection. PMID:30282828
Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury. PMID:30277459
Identifying High-Priority Proteins Across the Human Diseasome Using Semantic Similarity. PMID:30256117
The Comparative Toxicogenomics Database: update 2019. PMID:30247620
Small membranous proteins of the TorE/NapE family, crutches for cognate respiratory systems in Proteobacteria. PMID:30206249
Marine microbial metagenomes sampled across space and time. PMID:30179232
Challenges of Connecting Chemistry to Pharmacology: Perspectives from Curating the IUPHAR/BPS Guide to PHARMACOLOGY. PMID:30087946
Acyltransferases as Tools for Polyketide Synthase Engineering. PMID:30022008
Comparative genomic analysis of eutherian adiponectin genes. PMID:30003153
Fetal articular cartilage regeneration versus adult fibrocartilaginous repair: secretome proteomics unravels molecular mechanisms in an ovine model. PMID:29991479
A reference cytochrome c oxidase subunit I database curated for hierarchical classification of arthropod metabarcoding data. PMID:29967752
Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. PMID:29959351
A genetics-based approach confirms immune associations with life history across multiple populations of an aquatic vertebrate (Gasterosteus aculeatus). PMID:29924437
Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways. PMID:29846728
Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO. PMID:29785005
Viromes of one year old infants reveal the impact of birth mode on microbiome diversity. PMID:29761040
Phenotype Instance Verification and Evaluation Tool (PIVET): A Scaled Phenotype Evidence Generation Framework Using Web-Based Medical Literature. PMID:29728351
An update on PUG-REST: RESTful interface for programmatic access to PubChem. PMID:29718389
Functions of the sirtuin deacylase SIRT5 in normal physiology and pathobiology. PMID:29637793
Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing. PMID:29635365
Interleukins and their signaling pathways in the Reactome biological pathway database. PMID:29378288
Database resources of the National Center for Biotechnology Information PubMed citations: 421.

421 articles citing: Database resources of the National Center for Biotechnology Information

Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes. PMID:35821377
Prior exposure to microcystin alters host gut resistome and is associated with dysregulated immune homeostasis in translatable mouse models. PMID:35799048
RegEl corpus: identifying DNA regulatory elements in the scientific literature. PMID:35758881
Robust fingerprinting of genomic databases. PMID:35758787
Design of a Multi-Epitopes Based Chimeric Vaccine against Enterobacter cloacae Using Pan-Genome and Reverse Vaccinology Approaches. PMID:35746494
Splice-site identification for exon prediction using bidirectional LSTM-RNN approach. PMID:35663929
Sequence-based pangenomic core detection. PMID:35663029
First two mitochondrial genomes for the order Filobasidiales reveal novel gene rearrangements and intron dynamics of Tremellomycetes. PMID:35501936
Characterization of differential gene expression of broiler chicken to thermal stress in discrete developmental stages. PMID:35479510
Cathelicidin-3 Associated With Serum Extracellular Vesicles Enables Early Diagnosis of a Transmissible Cancer. PMID:35422813
Transcriptomic Analysis of Liver Indicates Novel Vaccine to Porcine Reproductive and Respiratory Virus Promotes Homeostasis in T-Cell and Inflammatory Immune Responses Compared to a Commercial Vaccine in Pigs. PMID:35400088
Exploring the Lethality of Human-Adapted Coronavirus Through Alignment-Free Machine Learning Approaches Using Genomic Sequences. PMID:35386190
Establishment of an Artificial Neural Network Model Using Immune-Infiltration Related Factors for Endometrial Receptivity Assessment. PMID:35214598
GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring. PMID:35087491
Bacterial gasdermins reveal an ancient mechanism of cell death. PMID:35025633
Identification of Cross-Talk and Pyroptosis-Related Genes Linking Periodontitis and Rheumatoid Arthritis Revealed by Transcriptomic Analysis. PMID:35003389
Characterization of the mitochondrial genomes of three powdery mildew pathogens reveals remarkable variation in size and nucleotide composition. PMID:34890311
Integrative COVID-19 biological network inference with probabilistic core decomposition. PMID:34791019
TopoFun: a machine learning method to improve the functional similarity of gene co-expression modules. PMID:34761220
The complete mitochondrial genome of Dictyostelium intermedium. PMID:34746396
Multi-Similarities Bilinear Matrix Factorization-Based Method for Predicting Human Microbe-Disease Associations. PMID:34721543
Identifying disease-gene associations using a convolutional neural network-based model by embedding a biological knowledge graph with entity descriptions. PMID:34653225
RFCM-PALM: In-Silico Prediction of S-Palmitoylation Sites in the Synaptic Proteins for Male/Female Mouse Data. PMID:34576064
Genome assembly of a Mesoamerican derived variety of lima bean: a foundational cultivar in the Mid-Atlantic USA. PMID:34542584
Characterization of a novel multidomain CE15-GH8 enzyme encoded by a polysaccharide utilization locus in the human gut bacterium Bacteroides eggerthii. PMID:34480044
Architecture Insight of Bifidobacterial α-L-Fucosidases. PMID:34445166
Editorial: Integration of Multi-Omics Techniques in Cancer. PMID:34434225
Databases for Protein-Protein Interactions. PMID:34236665
The mitochondrial genome of the grape powdery mildew pathogen Erysiphe necator is intron rich and exhibits a distinct gene organization. PMID:34230575
Prevalence and spectrum of DNA mismatch repair gene variation in the general Chinese population. PMID:34172528
Development of a Dissemination Platform for Spatiotemporal and Phylogenetic Analysis of Avian Infectious Bronchitis Virus. PMID:34017870
The Role of Network Science in Glioblastoma. PMID:33801334
Pilot RNA-seq data from 24 species of vascular plants at Harvard Forest. PMID:33680580
In Silico Prediction of New Mutations That Can Improve the Binding Abilities Between 2019-nCoV Coronavirus and Human ACE2. PMID:33560990
The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2. PMID:33555346
TagSeq for gene expression in non-model plants: A pilot study at the Santa Rita Experimental Range NEON core site. PMID:33304661
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy. PMID:33302373
Functional Diversification of the Dihydroflavonol 4-Reductase from Camellia nitidissima Chi. in the Control of Polyphenol Biosynthesis. PMID:33198369
Contaminating DNA in human saliva alters the detection of variants from whole genome sequencing. PMID:33159102
Exploration of surface glycoprotein to design multi-epitope vaccine for the prevention of Covid-19. PMID:33043110
Molecular evolutionary and structural analysis of human UCHL1 gene demonstrates the relevant role of intragenic epistasis in Parkinson's disease and other neurological disorders. PMID:33028204
Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans. PMID:32993015
Tissue-specific usage of transposable element-derived promoters in mouse development. PMID:32988383
Bulk and Active Sediment Prokaryotic Communities in the Mariana and Mussau Trenches. PMID:32765444
The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2. PMID:32714120
Role of SARS-CoV-2 in altering the RNA binding protein and miRNA directed post-transcriptional regulatory networks in humans. PMID:32676599
Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis. PMID:32674507
Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria. PMID:32518115
Genome Sequences of Newcastle Disease Virus Strains from Two Outbreaks in Indonesia. PMID:32499364
Insight into Evolution and Conservation Patterns of B1-Subfamily Members of GPCR. PMID:32421105
Fungicides Reduce the Abundance of Yeast-like Symbionts and Survival of White-Backed Planthopper Sogatella furcifera (Homoptera: Delphacidae). PMID:32230918
An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms. PMID:32055857
Transcriptome Sequencing of Listeria monocytogenes Reveals Major Gene Expression Changes in Response to Lactic Acid Stress Exposure but a Less Pronounced Response to Oxidative Stress. PMID:32038553
A novel lncRNA as a positive regulator of carotenoid biosynthesis in Fusarium. PMID:31959816
Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata. PMID:31860080
Predicting and designing therapeutics against the Nipah virus. PMID:31830030
FlySilico: Flux balance modeling of Drosophila larval growth and resource allocation. PMID:31748517
Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: A Canonical Pathway. PMID:31717414
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP). PMID:31644802
Molecular Characterization of Leishmania RNA virus 2 in Leishmania major from Uzbekistan. PMID:31640177
Single-cell RNA-seq variant analysis for exploration of genetic heterogeneity in cancer. PMID:31267007
Computational Characterization of the mtORF of Pocilloporid Corals: Insights into Protein Structure and Function in Stylophora Lineages from Contrasting Environments. PMID:31035578
Draft genome of the river water buffalo. PMID:30962899
RNA-sequencing in ophthalmology research: considerations for experimental design and analysis. PMID:30911735
Carbon Fixation by Marine Ultrasmall Prokaryotes. PMID:30903144
Measuring the importance of vertices in the weighted human disease network. PMID:30901770
Molecular evolutionary and structural analysis of familial exudative vitreoretinopathy associated FZD4 gene. PMID:30849938
The Membrane Proximal Domain of TRPV1 and TRPV2 Channels Mediates Protein⁻Protein Interactions and Lipid Binding In Vitro. PMID:30764505
Compression of Large Sets of Sequence Data Reveals Fine Diversification of Functional Profiles in Multigene Families of Proteins: A Study for Peptidyl-Prolyl cis/trans Isomerases (PPIase). PMID:30754725
Drug-Target Interaction Prediction via Dual Laplacian Graph Regularized Matrix Completion. PMID:30627536
Capsule network for protein post-translational modification site prediction. PMID:30520972
Aequatus: an open-source homology browser. PMID:30395211
Molecular docking studies of human MCT8 protein with soy isoflavones in Allan-Herndon-Dudley syndrome (AHDS). PMID:30345146
Multiple paralogues of α-SNAP in Giardia lamblia exhibit independent subcellular localization and redistribution during encystation and stress. PMID:30286802
DNArCdb: A database of cancer biomarkers in DNA repair genes that includes variants related to multiple cancer phenotypes. PMID:30098577
Analysis of public RNA-sequencing data reveals biological consequences of genetic heterogeneity in cell line populations. PMID:30046134
RabGTD: a comprehensive database of rabbit genome and transcriptome. PMID:30010730
Viral Entry Properties Required for Fitness in Humans Are Lost through Rapid Genomic Change during Viral Isolation. PMID:29970463
Algorithms and strategies in short-read shotgun metagenomic reconstruction of plant communities. PMID:29732264
The role of the Human Metabolome Database in inborn errors of metabolism. PMID:29663269
The complete mitochondrial genome of the hermaphroditic freshwater mussel Anodonta cygnea (Bivalvia: Unionidae): in silico analyses of sex-specific ORFs across order Unionoida. PMID:29587633
Synopsis of the SOFL Plant-Specific Gene Family. PMID:29467189
Time-consistent reconciliation maps and forbidden time travel. PMID:29441122
Genome-wide scan for commons SNPs affecting bovine leukemia virus infection level in dairy cattle. PMID:29439661
The regulatory network analysis of long noncoding RNAs in human colorectal cancer. PMID:29374362
Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues. PMID:29337142
Detailed secondary structure models of invertebrate 7SK RNAs. PMID:29219696
An RNA structure-mediated, posttranscriptional model of human α-1-antitrypsin expression. PMID:29109288
HCMDB: the human cancer metastasis database. PMID:29088455
Peptidylprolyl Isomerases as In Vivo Carriers for Drugs That Target Various Intracellular Entities. PMID:28961224
Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations. PMID:28912564
Biologically feasible gene trees, reconciliation maps and informative triples. PMID:28861118
Exoproteome Analysis of the Seaweed Pathogen Nautella italica R11 Reveals Temperature-Dependent Regulation of RTX-Like Proteins. PMID:28706511
Daily Changes in Composition and Diversity of the Intestinal Microbiota in Patients with Anorexia Nervosa: A Series of Three Cases. PMID:28586130
Meta Analysis of Human AlzGene Database: Benefits and Limitations of Using C. elegans for the Study of Alzheimer's Disease and Co-morbid Conditions. PMID:28553317
Identifying pathogenicity of human variants via paralog-based yeast complementation. PMID:28542158
Models of global gene expression define major domains of cell type and tissue identity. PMID:28426095
Leucine to proline substitution by SNP at position 197 in Caspase-9 gene expression leads to neuroblastoma: a bioinformatics analysis. PMID:28324374
Selection and Prioritization of Candidate Drug Targets for Amyotrophic Lateral Sclerosis Through a Meta-Analysis Approach. PMID:28236105
UFGT: The Key Enzyme Associated with the Petals Variegation in Japanese Apricot. PMID:28223989
A novel RNA sequencing data analysis method for cell line authentication. PMID:28192450
Mixing omics: combining genetics and metabolomics to study rheumatic diseases. PMID:28148918
Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads. PMID:28122610
Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution. PMID:28049628
γ-Protocadherin structural diversity and functional implications. PMID:27782885
Evaluation of Normalization Methods for RNA-Seq Gene Expression Estimation. PMID:27532058
Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA. PMID:27526722
Analysis of chromosomal aberrations and recombination by allelic bias in RNA-Seq. PMID:27385103
A Comprehensive Curation Shows the Dynamic Evolutionary Patterns of Prokaryotic CRISPRs. PMID:27195295
Drug Repurposing Is a New Opportunity for Developing Drugs against Neuropsychiatric Disorders. PMID:27073698
Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients. PMID:27068610
EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data. PMID:27004791
From GenBank to GBIF: Phylogeny-Based Predictive Niche Modeling Tests Accuracy of Taxonomic Identifications in Large Occurrence Data Repositories. PMID:26967999
Unique PFK regulatory property from some mosquito vectors of disease, and from Drosophila melanogaster. PMID:26911930
Extensive Transcriptome Changes Underlying the Flower Color Intensity Variation in Paeonia ostii. PMID:26779235
Extensive regulation of nicotinate phosphoribosyltransferase (NAPRT) expression in human tissues and tumors. PMID:26675378
Gene Expression Reaction Norms Unravel the Molecular and Cellular Processes Underpinning the Plastic Phenotypes of Alternanthera Philoxeroides in Contrasting Hydrological Conditions. PMID:26617628
Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells. PMID:26602695
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. PMID:26493560
Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria. PMID:26303516
Genome-Wide Reprogramming of Transcript Architecture by Temperature Specifies the Developmental States of the Human Pathogen Histoplasma. PMID:26177267
From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics. PMID:26154165
The WUSCHEL-RELATED HOMEOBOX 3 gene PaWOX3 regulates lateral organ formation in Norway spruce. PMID:26115363
A new alkaline lipase obtained from the metagenome of marine sponge Ircinia sp. PMID:25921581
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging. PMID:25853883
Impact of the CFTR-potentiator ivacaftor on airway microbiota in cystic fibrosis patients carrying a G551D mutation. PMID:25853698
SNPfisher: tools for probing genetic variation in laboratory-reared zebrafish. PMID:25813542
Improved detection of artifactual viral minority variants in high-throughput sequencing data. PMID:25657642
Medical and biomedical research productivity from the Kingdom of Saudi Arabia (2008-2012). PMID:25657608
Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach. PMID:25632945
OntoMate: a text-mining tool aiding curation at the Rat Genome Database. PMID:25619558
First co-expression of a lipase and its specific foldase obtained by metagenomics. PMID:25510188
Developmental regulation of human cortex transcription and its clinical relevance at single base resolution. PMID:25501035
Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods. PMID:25474078
Computational prediction of microRNAs from Toxoplasma gondii potentially regulating the hosts' gene expression. PMID:25462155
Non-coding RNA gene families in the genomes of anopheline mosquitoes. PMID:25432596
Dissecting the human protein-protein interaction network via phylogenetic decomposition. PMID:25412639
Fast and sensitive protein alignment using DIAMOND. PMID:25402007
Fingerprints of a message: integrating positional information on the transcriptome. PMID:25364746
A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. PMID:25361952
A transcriptomic analysis of Chrysanthemum nankingense provides insights into the basis of low temperature tolerance. PMID:25277256
DupChecker: a bioconductor package for checking high-throughput genomic data redundancy in meta-analysis. PMID:25267467
Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life. PMID:25238539
Orthology detection combining clustering and synteny for very large datasets. PMID:25137074
Curation and analysis of multitargeting agents for polypharmacological modeling. PMID:25133604
miRSeq: a user-friendly standalone toolkit for sequencing quality evaluation and miRNA profiling. PMID:25114903
Quality control on the frontier. PMID:24904650
Proteomic analysis of Mecistocirrus digitatus and Haemonchus contortus intestinal protein extracts and subsequent efficacy testing in a vaccine trial. PMID:24901227
Integrative RNA-seq and microarray data analysis reveals GC content and gene length biases in the psoriasis transcriptome. PMID:24844236
EpimiR: a database of curated mutual regulation between miRNAs and epigenetic modifications. PMID:24682734
A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach. PMID:24595269
Life in an unusual intracellular niche: a bacterial symbiont infecting the nucleus of amoebae. PMID:24500618
The vertebrate RCAN gene family: novel insights into evolution, structure and regulation. PMID:24465593
An Overview of the Challenges in Designing, Integrating, and Delivering BARD: A Public Chemical-Biology Resource and Query Portal for Multiple Organizations, Locations, and Disciplines. PMID:24441647
A novel GABRG2 mutation, p.R136*, in a family with GEFS+ and extended phenotypes. PMID:24407264
A human torque teno virus encodes a microRNA that inhibits interferon signaling. PMID:24367263
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. PMID:24306534
Structure of Patt1 human proapoptotic histone acetyltransferase. PMID:24248912
Fine mapping and identification of a candidate gene for a major locus controlling maturity date in peach. PMID:24148786
New hyperekplexia mutations provide insight into glycine receptor assembly, trafficking, and activation mechanisms. PMID:24108130
Use of MSAP markers to analyse the effects of salt stress on DNA methylation in rapeseed (Brassica napus var. oleifera). PMID:24086583
Next-generation sequence analysis of cancer xenograft models. PMID:24086345
Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae. PMID:23949660
Analysis of the genomic response of human prostate cancer cells to histone deacetylase inhibitors. PMID:23880963
A phylogenetic analysis of the grape genus (Vitis L.) reveals broad reticulation and concurrent diversification during neogene and quaternary climate change. PMID:23826735
Fine-tuning of microRNA-mediated repression of mRNA by splicing-regulated and highly repressive microRNA recognition element. PMID:23819653
Construction of a full-length enriched cDNA library and preliminary analysis of expressed sequence tags from Bengal Tiger Panthera tigris tigris. PMID:23708105
ExtremeDB: a unified web repository of extremophilic archaea and bacteria. PMID:23696792
Discovering chromatin motifs using FAIRE sequencing and the human diploid genome. PMID:23656909
Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations. PMID:23646159
Guard cell purification and RNA isolation suitable for high-throughput transcriptional analysis of cell-type responses to biotic stresses. PMID:23634837
Functional classification of immune regulatory proteins. PMID:23583034
Growth temperature and genome size in bacteria are negatively correlated, suggesting genomic streamlining during thermal adaptation. PMID:23563968
Evaluating purifying selection in the mitochondrial DNA of various mammalian species. PMID:23533597
Alternating hemiplegia of childhood-related neural and behavioural phenotypes in Na+,K+-ATPase α3 missense mutant mice. PMID:23527305
Genome-Level Analysis of Selective Constraint without Apparent Sequence Conservation. PMID:23418180
Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish. PMID:23368736
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis. PMID:23341152
Insulin and IGF1 receptors are essential for XX and XY gonadal differentiation and adrenal development in mice. PMID:23300479
Polypharmacology: drug discovery for the future. PMID:23272792
ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species. PMID:23180770
Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers. PMID:23056629
Crystal structure of HutZ, a heme storage protein from Vibrio cholerae: A structural mismatch observed in the region of high sequence conservation. PMID:23013214
In silico directed mutagenesis identifies the CD81/claudin-1 hepatitis C virus receptor interface. PMID:22897233
Ontologies as integrative tools for plant science. PMID:22847540
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. PMID:22684630
Development of a pharmaceutical hepatotoxicity biomarker panel using a discovery to targeted proteomics approach. PMID:22527513
Orthology relations, symbolic ultrametrics, and cographs. PMID:22456957
Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report. PMID:22434826
Recent advances of metabolomics in plant biotechnology. PMID:22308170
Convergent evolution in structural elements of proteins investigated using cross profile analysis. PMID:22244085
Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. PMID:22159132
Human genetics and genomics a decade after the release of the draft sequence of the human genome. PMID:22155605
The UCSC Archaeal Genome Browser: 2012 update. PMID:22080555
Characterization of the human ornithine transcarbamylase 3' untranslated regulatory region. PMID:22054066
Accelerated recruitment of new brain development genes into the human genome. PMID:22028629
Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction. PMID:21999673
The energy landscape analysis of cancer mutations in protein kinases. PMID:21998754
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. PMID:21911355
Integrating GPCR-specific information with full text articles. PMID:21910883
In silico approach to inhibition of signaling pathways of Toll-like receptors 2 and 4 by ST2L. PMID:21897866
CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing. PMID:21878105
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data. PMID:21851591
Bacteriocyte-associated gammaproteobacterial symbionts of the Adelges nordmannianae/piceae complex (Hemiptera: Adelgidae). PMID:21833037
Identification and characterization of a new true lipase isolated through metagenomic approach. PMID:21762508
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. PMID:21750106
Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies. PMID:21731731
An evolutionary trade-off between protein turnover rate and protein aggregation favors a higher aggregation propensity in fast degrading proteins. PMID:21731483
Independent subtilases expansions in fungi associated with animals. PMID:21727238
Improving pan-genome annotation using whole genome multiple alignment. PMID:21718539
Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance. PMID:21666019
Sharing and archiving nucleic acid structure mapping data. PMID:21610212
Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing. PMID:21605378
hERGAPDbase: a database documenting hERG channel inhibitory potentials and APD-prolongation activities of chemical compounds. PMID:21586548
The structural impact of cancer-associated missense mutations in oncogenes and tumor suppressors. PMID:21575214
A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. PMID:21551137
The Booly aliasing resource: a database of grouped biological identifiers. PMID:21544171
A suspected parasite spill-back of two novel Myxidium spp. (Myxosporea) causing disease in Australian endemic frogs found in the invasive Cane toad. PMID:21541340
Proteinortho: detection of (co-)orthologs in large-scale analysis. PMID:21526987
Voxelwise gene-wide association study (vGeneWAS): multivariate gene-based association testing in 731 elderly subjects. PMID:21497199
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. PMID:21472436
hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data. PMID:21450710
Apolipoprotein M gene (APOM) polymorphism modifies metabolic and disease traits in type 2 diabetes. PMID:21390319
The properties and applications of single-molecule DNA sequencing. PMID:21349208
Comorbidity of bipolar disorder with substance abuse: selection of prioritized genes for translational research. PMID:21347170
Screening for antimicrobial resistance genes and virulence factors via genome sequencing. PMID:21335393
Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing. PMID:21310711
Functional relevance of CpG island length for regulation of gene expression. PMID:21288871
Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis. PMID:21232103
Structure-function relationship of cytoplasmic and nuclear IκB proteins: an in silico analysis. PMID:21203422
BiologicalNetworks 2.0--an integrative view of genome biology data. PMID:21190573
De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas). PMID:21182800
Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction. PMID:21171995
The Notch target Hes1 directly modulates Gli1 expression and Hedgehog signaling: a potential mechanism of therapeutic resistance. PMID:21169257
Predicting DNA-binding specificities of eukaryotic transcription factors. PMID:21152420
Mugsy: fast multiple alignment of closely related whole genomes. PMID:21148543
LAB-Secretome: a genome-scale comparative analysis of the predicted extracellular and surface-associated proteins of Lactic Acid Bacteria. PMID:21092245
VnD: a structure-centric database of disease-related SNPs and drugs. PMID:21051351
GlycomeDB--a unified database for carbohydrate structures. PMID:21045056
The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms. PMID:21036862
Nucleotide parasitism by Simkania negevensis (Chlamydiae). PMID:20971898
EuroDia: a beta-cell gene expression resource. PMID:20940178
Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology. PMID:20927658
Public data archives for genomic structural variation. PMID:20877315
Accurately assessing the risk of schizophrenia conferred by rare copy-number variation affecting genes with brain function. PMID:20838587
Two naturally occurring mutations in the type 1 melanin-concentrating hormone receptor abolish agonist-induced signaling. PMID:20833795
A score of the ability of a three-dimensional protein model to retrieve its own sequence as a quantitative measure of its quality and appropriateness. PMID:20830209
Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains. PMID:20799350
The X as model for RNA's niche in epigenomic regulation. PMID:20739414
ReCGiP, a database of reproduction candidate genes in pigs based on bibliomics. PMID:20707928
Expression of the transcription factor, TFII-I, during post-implantation mouse embryonic development. PMID:20642858
Integration and visualization of systems biology data in context of the genome. PMID:20642854
Human variation databases. PMID:20639550
CGDSNPdb: a database resource for error-checked and imputed mouse SNPs. PMID:20624716
OpenFluDB, a database for human and animal influenza virus. PMID:20624713
Affinity of aporphines for the human 5-HT2A receptor: insights from homology modeling and molecular docking studies. PMID:20621490
A novel chemogenomics analysis of G protein-coupled receptors (GPCRs) and their ligands: a potential strategy for receptor de-orphanization. PMID:20537162
A survey of genomic traces reveals a common sequencing error, RNA editing, and DNA editing. PMID:20531933
Testing computational prediction of missense mutation phenotypes: functional characterization of 204 mutations of human cystathionine beta synthase. PMID:20455263
Genome-wide assessment of differential roles for p300 and CBP in transcription regulation. PMID:20435671
The glycinergic system in human startle disease: a genetic screening approach. PMID:20407582
A human-specific de novo protein-coding gene associated with human brain functions. PMID:20376170
Bioinformatics and molecular modeling in glycobiology. PMID:20364395
MLTrends: Graphing MEDLINE term usage over time. PMID:20333611
Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales. PMID:20333207
MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing. PMID:20215419
Word add-in for ontology recognition: semantic enrichment of scientific literature. PMID:20181245
Identification of 28 novel mutations in the Bardet-Biedl syndrome genes: the burden of private mutations in an extensively heterogeneous disease. PMID:20177705
A large and accurate collection of peptidase cleavages in the MEROPS database. PMID:20157488
ORION-VIRCAT: a tool for mapping ICTV and NCBI taxonomies. PMID:20157487
Management of High-Throughput DNA Sequencing Projects: Alpheus. PMID:20151039
A pattern analysis of gene conversion literature. PMID:20148076
Complete-proteome mapping of human influenza A adaptive mutations: implications for human transmissibility of zoonotic strains. PMID:20140252
DIGA--a database of improved gene annotation for phytopathogens. PMID:20089203
TollML: a database of toll-like receptor structural motifs. PMID:20084417
A protocol for generating a high-quality genome-scale metabolic reconstruction. PMID:20057383
Analysis of complex disease association and linkage studies using the University of California Santa Cruz Genome Browser. PMID:20031585
Two-stage joint selection method to identify candidate markers from genome-wide association studies. PMID:20018019
Advances in translational bioinformatics: computational approaches for the hunting of disease genes. PMID:20007728
Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria. PMID:20007606
The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species. PMID:20003425
Filling gaps in PPAR-alpha signaling through comparative nutrigenomics analysis. PMID:20003344
Archiving next generation sequencing data. PMID:19965774
ANEXdb: an integrated animal ANnotation and microarray EXpression database. PMID:19936830
Detection of treatment-induced changes in signaling pathways in gastrointestinal stromal tumors using transcriptomic data. PMID:19903850
Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. PMID:19892720
Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches. PMID:19847304
ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses. PMID:19846609
Proteomics analysis of A33 immunoaffinity-purified exosomes released from the human colon tumor cell line LIM1215 reveals a tissue-specific protein signature. PMID:19837982
Sequence and structure signatures of cancer mutation hotspots in protein kinases. PMID:19834613
The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. PMID:19825586
Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD). PMID:19814812
Comparison of human chromosome 19q13 and syntenic region on mouse chromosome 7 reveals absence, in man, of 11.6 Mb containing four mouse calcium-sensing receptor-related sequences: relevance to familial benign hypocalciuric hypercalcaemia type 3. PMID:19809483
Optimization and comparison of different methods for RNA isolation for cDNA library construction from the reindeer lichen Cladonia rangiferina. PMID:19804636
Current Screens Based on the AlphaScreen Technology for Deciphering Cell Signalling Pathways. PMID:19794881
Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics. PMID:19781082
Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb. PMID:19758468
Pepsin homologues in bacteria. PMID:19758436
Prediction and identification of tumor-specific noncoding RNAs from human UniGene. PMID:19757216
Context-driven discovery of gene cassettes in mobile integrons using a computational grammar. PMID:19735578
Candidate genes involved in neural plasticity and the risk for attention-deficit hyperactivity disorder: a meta-analysis of 8 common variants. PMID:19721846
Comparative analyses of plant transcription factor databases. PMID:19721806
BatchGenAna: a batch platform for large-scale genomic analysis of mammalian small RNAs. PMID:19707298
The human protein coevolution network. PMID:19696150
Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. PMID:19684108
Linking genes to diseases: it's all in the data. PMID:19678910
Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations. PMID:19654296
A novel putative miRNA target enhancer signal. PMID:19649282
CLEAN: CLustering Enrichment ANalysis. PMID:19640299
OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity. PMID:19615117
Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis. PMID:19615109
Integrative sequence and tissue expression profiling of chicken and mammalian aquaporins. PMID:19607658
HAPPI: an online database of comprehensive human annotated and predicted protein interactions. PMID:19594875
Differences in duplication age distributions between human GPCRs and their downstream genes from a network prospective. PMID:19594873
aGEM: an integrative system for analyzing spatial-temporal gene-expression information. PMID:19592395
DDEC: Dragon database of genes implicated in esophageal cancer. PMID:19580656
Rodent-specific alternative exons are more frequent in rapidly evolving genes and in paralogs. PMID:19558667
Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. PMID:19557189
The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes. PMID:19545381
Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome segments as its possible route of origin. PMID:19535502
Homology modeling of human Toll-like receptors TLR7, 8, and 9 ligand-binding domains. PMID:19521997
Reflect: augmented browsing for the life scientist. PMID:19513049
LD2SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs. PMID:19500380
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. PMID:19498102
Computational biology methods and their application to the comparative genomics of endocellular symbiotic bacteria of insects. PMID:19495914
ProGMap: an integrated annotation resource for protein orthology. PMID:19494185
Sexy gene conversions: locating gene conversions on the X-chromosome. PMID:19487239
Origin of saxitoxin biosynthetic genes in cyanobacteria. PMID:19484122
Family classification without domain chaining. PMID:19478015
Small RNAs derived from snoRNAs. PMID:19474147
Sim4cc: a cross-species spliced alignment program. PMID:19429899
The charge-dipole pocket: a defining feature of signaling pathway GTPase on/off switches. PMID:19427324
PCOPGene-Net: holistic characterisation of cellular states from microarray data based on continuous and non-continuous analysis of gene-expression relationships. PMID:19426548
A primary xenograft model of small-cell lung cancer reveals irreversible changes in gene expression imposed by culture in vitro. PMID:19351829
A signature-based method for indexing cell cycle phase distribution from microarray profiles. PMID:19331659
Location, location, (ChIP-)location! Mapping chromatin landscapes one immunoprecipitation at a time. PMID:19308935
Functional classification of genome-scale metabolic networks. PMID:19300528
RBF-TSS: identification of transcription start site in human using radial basis functions network and oligonucleotide positional frequencies. PMID:19287502
Bioinformatic characterizations and prediction of K+ and Na+ ion channels effector toxins. PMID:19284552
Recent developments in StemBase: a tool to study gene expression in human and murine stem cells. PMID:19284540
Identification of Atg5-dependent transcriptional changes and increases in mitochondrial mass in Atg5-deficient T lymphocytes. PMID:19276668
CNV-seq, a new method to detect copy number variation using high-throughput sequencing. PMID:19267900
FragIdent--automatic identification and characterisation of cDNA-fragments. PMID:19254371
Identification and validation of reference genes for quantitative RT-PCR normalization in wheat. PMID:19232096
Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies. PMID:19219566
Tuberculosis drug resistance mutation database. PMID:19209951
Meta-analysis of age-related gene expression profiles identifies common signatures of aging. PMID:19189975
Detailed transcriptome atlas of the pancreatic beta cell. PMID:19146692
Immunome knowledge base (IKB): an integrated service for immunome research. PMID:19134210
RepPop: a database for repetitive elements in Populus trichocarpa. PMID:19134208
Global similarity with local differences in linkage disequilibrium between the Dutch and HapMap-CEU populations. PMID:19127282
Genomic and genetic database resources for the grasses. PMID:19126704
GenomeGraphs: integrated genomic data visualization with R. PMID:19123956
Reconstruction of biochemical networks in microorganisms. PMID:19116616
Identification of a molecular signaling network that regulates a cellular necrotic cell death pathway. PMID:19109899
An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases. PMID:19091018
Evolutionary origin and phylogenetic analysis of the novel oocyte-specific eukaryotic translation initiation factor 4E in Tetrapoda. PMID:19089447
PSI-BLAST pseudocounts and the minimum description length principle. PMID:19088134
GeneDistiller--distilling candidate genes from linkage intervals. PMID:19057649
A bioinformatician's guide to metagenomics. PMID:19052320
Ensembl 2009. PMID:19033362
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. PMID:19029536
Cataloguing the HIV type 1 human protein interaction network. PMID:19025396
M148R and M149R are two virulence factors for myxoma virus pathogenesis in the European rabbit. PMID:19019281
Medium- and short-chain dehydrogenase/reductase gene and protein families : the MDR superfamily. PMID:19011751
The protein structure initiative structural genomics knowledgebase. PMID:19010965
Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells. PMID:19001483
The UCSC Genome Browser Database: update 2009. PMID:18996895
INTERFEROME: the database of interferon regulated genes. PMID:18996892
Chemical databases for environmental health and clinical research. PMID:18996453
Molecular genetics of addiction and related heritable phenotypes: genome-wide association approaches identify "connectivity constellation" and drug target genes with pleiotropic effects. PMID:18991966
SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling. PMID:18989261
Human Protein Reference Database--2009 update. PMID:18988627
PIPs: human protein-protein interaction prediction database. PMID:18988626
Mouse phenome database. PMID:18987003
MoKCa database--mutations of kinases in cancer. PMID:18986996
SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system. PMID:18984625
ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes. PMID:18984624
CDD: specific functional annotation with the Conserved Domain Database. PMID:18984618
BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009. PMID:18984617
Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines. PMID:18978788
An integrated software system for analyzing ChIP-chip and ChIP-seq data. PMID:18978777
Petabyte-scale innovations at the European Nucleotide Archive. PMID:18978013
SysZNF: the C2H2 zinc finger gene database. PMID:18974185
The role of CLCA proteins in inflammatory airway disease. PMID:18954282
VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts. PMID:18953038
GOBASE: an organelle genome database. PMID:18953030
MODBASE, a database of annotated comparative protein structure models and associated resources. PMID:18948282
IUPHAR-DB: the IUPHAR database of G protein-coupled receptors and ion channels. PMID:18948278
UCbase & miRfunc: a database of ultraconserved sequences and microRNA function. PMID:18945703
PEDANT covers all complete RefSeq genomes. PMID:18940859
NCBI GEO: archive for high-throughput functional genomic data. PMID:18940857
MMsINC: a large-scale chemoinformatics database. PMID:18931373
Human immunodeficiency virus type 1, human protein interaction database at NCBI. PMID:18927109
Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR). PMID:18854354
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. PMID:18845571
MetaSim: a sequencing simulator for genomics and metagenomics. PMID:18841204
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. PMID:18838390
Linking genes to literature: text mining, information extraction, and retrieval applications for biology. PMID:18834499
Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach. PMID:18822146
Presenting and exploring biological pathways with PathVisio. PMID:18817533
OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules. PMID:18790807
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks. PMID:18782832
The Degradome database: mammalian proteases and diseases of proteolysis. PMID:18776217
Big data: The future of biocuration. PMID:18769432
Methods and tools for comparative genomics of foodborne pathogens. PMID:18713064
Guidelines for the nomenclature of the human heat shock proteins. PMID:18663603
Fine mapping of the GLC1K juvenile primary open-angle glaucoma locus and exclusion of candidate genes. PMID:18648523
A gene wiki for community annotation of gene function. PMID:18613750
Lawsonia intracellularis contains a gene encoding a functional rickettsia-like ATP/ADP translocase for host exploitation. PMID:18606736
TriMEDB: a database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae. PMID:18590523
The ontology of biological taxa. PMID:18586729
BIOSMILE web search: a web application for annotating biomedical entities and relations. PMID:18515840
BioLit: integrating biological literature with databases. PMID:18515836
ENDEAVOUR update: a web resource for gene prioritization in multiple species. PMID:18508807
MADNet: microarray database network web server. PMID:18480121
OREST: the online resource for EST analysis. PMID:18463135
ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks. PMID:18440972
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. PMID:18416670
The CGView Server: a comparative genomics tool for circular genomes. PMID:18411202
GenBank. PMID:18073190
Database resources of the National Center for Biotechnology Information PubMed citations: 375.

375 articles citing: Database resources of the National Center for Biotechnology Information

Enhancing the Discovery of Functional Post-Translational Modification Sites with Machine Learning Models - Development, Validation, and Interpretation. PMID:35696084
The Readthrough Isoform AQP4ex Is Constitutively Phosphorylated in the Perivascular Astrocyte Endfeet of Human Brain. PMID:35625560
The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins. PMID:35610211
VHL-P138R and VHL-L163R Novel Variants: Mechanisms of VHL Pathogenicity Involving HIF-Dependent and HIF-Independent Actions. PMID:35388293
Transcriptional atlas analysis from multiple tissues reveals the expression specificity patterns in beef cattle. PMID:35351103
Comprehensive Transcriptome Analysis of Stem-Differentiating Xylem Upon Compression Stress in Cunninghamia Lanceolata. PMID:35309135
A Comprehensive Analysis of Fibrillar Collagens in Lamprey Suggests a Conserved Role in Vertebrate Musculoskeletal Evolution. PMID:35242758
Virtual Gene Concept and a Corresponding Pragmatic Research Program in Genetical Data Science. PMID:35052043
The first comprehensive database of germline pathogenic variants in East Asian cancer patients. PMID:34964846
Unraveling Protein Interactions between the Temperate Virus Bam35 and Its Bacillus Host Using an Integrative Yeast Two Hybrid-High Throughput Sequencing Approach. PMID:34681765
Large-scale analysis of imprinting in naive human pluripotent stem cells reveals recurrent aberrations and a potential link to FGF signaling. PMID:34597600
High Prevalence of Coinfecting Enteropathogens in Suspected Rotavirus Vaccine Breakthrough Cases. PMID:34586890
De novo genome assembly and in natura epigenomics reveal salinity-induced DNA methylation in the mangrove tree Bruguiera gymnorhiza. PMID:34532854
Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved. PMID:34193932
LeishIF4E-5 Is a Promastigote-Specific Cap-Binding Protein in Leishmania. PMID:33921489
Is PF-00835231 a Pan-SARS-CoV-2 Mpro Inhibitor? A Comparative Study. PMID:33802860
HARVESTMAN: a framework for hierarchical feature learning and selection from whole genome sequencing data. PMID:33794760
High Quality Aspergillus aculeatus Genomes and Transcriptomes: A Platform for Cellulase Activity Optimization Toward Industrial Applications. PMID:33585410
Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB. PMID:33445429
Models of the Gene Must Inform Data-Mining Strategies in Genomics. PMID:33286713
A novel Oct4/Pou5f1-like non-coding RNA controls neural maturation and mediates developmental effects of ethanol. PMID:33221301
Cultivable marine fungi from the Arctic Archipelago of Svalbard and their antibacterial activity. PMID:33062384
KGHC: a knowledge graph for hepatocellular carcinoma. PMID:32646496
Identification of Sphingosine Kinase-1 Inhibitors from Bioactive Natural Products Targeting Cancer Therapy. PMID:32596609
Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations. PMID:32445281
Glecaprevir and Maraviroc are high-affinity inhibitors of SARS-CoV-2 main protease: possible implication in COVID-19 therapy. PMID:32441299
Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life. PMID:32401752
Chapter 26 The Molecular Libraries Screening Center Network (MLSCN): Identifying Chemical Probes of Biological Systems. PMID:32287469
Virtual Screening Approach to Identify High-Affinity Inhibitors of Serum and Glucocorticoid-Regulated Kinase 1 among Bioactive Natural Products: Combined Molecular Docking and Simulation Studies. PMID:32070031
Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: A Canonical Pathway. PMID:31717414
Co-expression of synaptic genes in the sponge Amphimedon queenslandica uncovers ancient neural submodules. PMID:31673079
Molecular evolution of the meiotic recombination pathway in mammals. PMID:31579931
High-coverage genomes to elucidate the evolution of penguins. PMID:31531675
CAM: an alignment-free method to recover phylogenies using codon aversion motifs. PMID:31198636
CANCROX: a cross-species cancer therapy database. PMID:31032838
Genetic Variations and Precision Medicine. PMID:31019429
Association of Rare Coding Mutations With Alzheimer Disease and Other Dementias Among Adults of European Ancestry. PMID:30924900
Conserved Disease Modules Extracted From Multilayer Heterogeneous Disease and Gene Networks for Understanding Disease Mechanisms and Predicting Disease Treatments. PMID:30713550
A study in scarlet: MC1R as the main predictor of red hair and exemplar of the flip-flop effect. PMID:30657907
ExtRamp: a novel algorithm for extracting the ramp sequence based on the tRNA adaptation index or relative codon adaptiveness. PMID:30649455
Miniscule differences between sex chromosomes in the giant genome of a salamander. PMID:30552368
Lack of UGT polymorphism association with idasanutlin pharmacokinetics in solid tumor patients. PMID:30511219
Thirty biologically interpretable clusters of transcription factors distinguish cancer type. PMID:30305013
Universal method for robust detection of circadian state from gene expression. PMID:30201705
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. PMID:30120140
Using Multi-Scale Genetic, Neuroimaging and Clinical Data for Predicting Alzheimer's Disease and Reconstruction of Relevant Biological Mechanisms. PMID:30042519
A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae. PMID:29873704
Inferring duplication episodes from unrooted gene trees. PMID:29745844
Evolutionary Interplay between Symbiotic Relationships and Patterns of Signal Peptide Gain and Loss. PMID:29608732
Characterization of indole-3-pyruvic acid pathway-mediated biosynthesis of auxin in Neurospora crassa. PMID:29420579
Preferential selection of Arginine at the lipid-water-interface of TRPV1 during vertebrate evolution correlates with its snorkeling behaviour and cholesterol interaction. PMID:29196683
A Massively Parallel Sequence Similarity Search for Metagenomic Sequencing Data. PMID:29019934
Identification of a novel variant of the RET proto-oncogene in a novel family with Hirschsprung's disease. PMID:28799054
Biodeterioration of Pompeian mural paintings: fungal colonization favoured by the presence of volcanic material residues. PMID:28681298
Replications of Two Closely Related Groups of Jumbo Phages Show Different Level of Dependence on Host-encoded RNA Polymerase. PMID:28659872
Genome sequence variation in the constricta strain dramatically alters the protein interaction and localization map of Potato yellow dwarf virus. PMID:28635588
The most common technologies and tools for functional genome analysis. PMID:28630587
Genomic and transcriptomic analyses reveal adaptation mechanisms of an Acidithiobacillus ferrivorans strain YL15 to alpine acid mine drainage. PMID:28542527
An ontology-based search engine for digital reconstructions of neuronal morphology. PMID:28337675
Understanding the conservation patterns and molecular phylogenetics of human death receptors family through computational biology. PMID:28324447
Insights into the molecular mechanisms of Polygonum multiflorum Thunb-induced liver injury: a computational systems toxicology approach. PMID:28239160
Phylogenetic Tree Analysis of the Cold-Hot Nature of Traditional Chinese Marine Medicine for Possible Anticancer Activity. PMID:28191021
Allele-specific analysis of cell fusion-mediated pluripotent reprograming reveals distinct and predictive susceptibilities of human X-linked genes to reactivation. PMID:28118853
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. PMID:28092920
Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni. PMID:28050056
Intragenic Deletions in ATP7B as an Unusual Molecular Genetics Mechanism of Wilson's Disease Pathogenesis. PMID:27992490
Comparative transcriptional profile of the fish parasite Cryptocaryon irritans. PMID:27923398
Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells. PMID:27716510
Digital PCR Panel for Sensitive Hematopoietic Chimerism Quantification after Allogeneic Stem Cell Transplantation. PMID:27618030
Single-sample expression-based chemo-sensitivity score improves survival associations independently from genomic mutations for ovarian cancer Patients. PMID:27570657
Pinpointing the vesper bat transposon revolution using the Miniopterus natalensis genome. PMID:27489570
Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction. PMID:27467773
Effects of Lead and Mercury on Sulfate-Reducing Bacterial Activity in a Biological Process for Flue Gas Desulfurization Wastewater Treatment. PMID:27455890
Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract. PMID:27445992
Molecular Characterisation and Co-cultivation of Bacterial Biofilm Communities Associated with the Mat-Forming Diatom Didymosphenia geminata. PMID:27412380
RNAlien - Unsupervised RNA family model construction. PMID:27330139
Genomic Analysis Unravels Reduced Inorganic Sulfur Compound Oxidation of Heterotrophic Acidophilic Acidicaldus sp. Strain DX-1. PMID:27239474
Ebolavirus Database: Gene and Protein Information Resource for Ebolaviruses. PMID:27190508
Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification. PMID:27175227
An inter-species protein-protein interaction network across vast evolutionary distance. PMID:27107014
System-Wide Associations between DNA-Methylation, Gene Expression, and Humoral Immune Response to Influenza Vaccination. PMID:27031986
Why individual thermo sensation and pain perception varies? Clue of disruptive mutations in TRPVs from 2504 human genome data. PMID:26962677
Metabolomics in rheumatic diseases: desperately seeking biomarkers. PMID:26935283
A novel HCFC1 variant in male siblings with intellectual disability and microcephaly in the absence of cobalamin disorder. PMID:26893841
Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network. PMID:26830287
Estimation of Inhibitory Effect against Tyrosinase Activity through Homology Modeling and Molecular Docking. PMID:26788364
A study of bias and increasing organismal complexity from their post-translational modifications and reaction site interplays. PMID:26764274
UCSC Data Integrator and Variant Annotation Integrator. PMID:26740527
Genetic associations and shared environmental effects on the skin microbiome of Korean twins. PMID:26596276
Expression of temperature-sensitive ion channel TRPM8 in sperm cells correlates with vertebrate evolution. PMID:26500819
Assessing the Pathogenicity of Insertion and Deletion Variants with the Variant Effect Scoring Tool (VEST-Indel). PMID:26442818
Chi8: a GPU program for detecting significant interacting SNPs with the Chi-square 8-df test. PMID:26369336
Generation of whole genome sequences of new Cryptosporidium hominis and Cryptosporidium parvum isolates directly from stool samples. PMID:26318339
Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria. PMID:26074885
An Ebola virus-centered knowledge base. PMID:26055098
A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads. PMID:26052341
Antennal Transcriptome Analysis of Odorant Reception Genes in the Red Turpentine Beetle (RTB), Dendroctonus valens. PMID:25938508
Antitumor Activities of Ethyl Acetate Extracts from Selaginella doederleinii Hieron In Vitro and In Vivo and Its Possible Mechanism. PMID:25866543
Meta-Analysis of Gene Expression in Autism Spectrum Disorder. PMID:25720351
Co-occurrence of four nucleotide changes associated with an adult mitochondrial ataxia phenotype. PMID:25488682
Text mining in cancer gene and pathway prioritization. PMID:25392685
Semi-automated literature mining to identify putative biomarkers of disease from multiple biofluids. PMID:25379168
DEOP: a database on osmoprotectants and associated pathways. PMID:25326239
RADB: a database of rheumatoid arthritis-related polymorphisms. PMID:25228593
Big data in chemical toxicity research: the use of high-throughput screening assays to identify potential toxicants. PMID:25195622
A novel mutation in the transglutaminase-1 gene in an autosomal recessive congenital ichthyosis patient. PMID:25180191
Molecular phylogeny and predicted 3D structure of plant beta-D-N-acetylhexosaminidase. PMID:25165734
Network based integrated analysis of phenotype-genotype data for prioritization of candidate symptom genes. PMID:24991551
Integrative analysis of independent transcriptome data for rare diseases. PMID:24981076
Insilico docking study of compounds elucidated from helicteres isora fruits with ampkinase- insulin receptor. PMID:24966532
Metabolic characteristics of a glycogen-accumulating organism in Defluviicoccus cluster II revealed by comparative genomics. PMID:24889288
A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i). PMID:24742296
NatalieQ: a web server for protein-protein interaction network querying. PMID:24690407
Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697
Angiotensin II-induced cardiovascular load regulates cardiac remodeling and related gene expression in late-gestation fetal sheep. PMID:24614802
Do photobiont switch and cephalodia emancipation act as evolutionary drivers in the lichen symbiosis? A case study in the Pannariaceae (Peltigerales). PMID:24587091
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. PMID:24571547
Complete genome sequence of Enterococcus mundtii QU 25, an efficient L-(+)-lactic acid-producing bacterium. PMID:24568933
An Overview of the Challenges in Designing, Integrating, and Delivering BARD: A Public Chemical-Biology Resource and Query Portal for Multiple Organizations, Locations, and Disciplines. PMID:24441647
Identification and characterization of seven glutathione S-transferase genes from citrus red mite, Panonychus citri (McGregor). PMID:24351815
A metagenomic framework for the study of airborne microbial communities. PMID:24349140
CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis. PMID:24340000
Enhancing systems medicine beyond genotype data by dynamic patient signatures: having information and using it too. PMID:24312119
Identification of putative ortholog gene blocks involved in gestant and lactating mammary gland development: a rodent cross-species microarray transcriptomics approach. PMID:24288657
Anolis sex chromosomes are derived from a single ancestral pair. PMID:24279795
Differences in the structure of the gut bacteria communities in development stages of the Chinese white pine beetle (Dendroctonus armandi). PMID:24145750
Characterization of bacteriophages Cp1 and Cp2, the strain-typing agents for Xanthomonas axonopodis pv. citri. PMID:24123743
Combining genetic association study designs: a GWAS case study. PMID:24098305
Evaluation of genome sequencing quality in selected plant species using expressed sequence tags. PMID:23922843
Unraveling genomic variation from next generation sequencing data. PMID:23885890
Drug repositioning: a machine-learning approach through data integration. PMID:23800010
Finding potentially new multimorbidity patterns of psychiatric and somatic diseases: exploring the use of literature-based discovery in primary care research. PMID:23775174
The evolutionary portrait of metazoan NAD salvage. PMID:23724078
QA-RecombineIt: a server for quality assessment and recombination of protein models. PMID:23700309
Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus. PMID:23671567
Genome-wide analysis of immune system genes by expressed sequence Tag profiling. PMID:23616578
Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes. PMID:23606477
TUMIR: an experimentally supported database of microRNA deregulation in various cancers. PMID:23594715
DNA variations in oculocutaneous albinism: an updated mutation list and current outstanding issues in molecular diagnostics. PMID:23504663
PASmiR: a literature-curated database for miRNA molecular regulation in plant response to abiotic stress. PMID:23448274
Neuron-Enriched Gene Expression Patterns are Regionally Anti-Correlated with Oligodendrocyte-Enriched Patterns in the Adult Mouse and Human Brain. PMID:23440889
SPA: a short peptide assembler for metagenomic data. PMID:23435317
Systematic analysis of palatal transcriptome to identify cleft palate genes within TGFβ3-knockout mice alleles: RNA-Seq analysis of TGFβ3 Mice. PMID:23421592
The transcriptional and gene regulatory network of Lactococcus lactis MG1363 during growth in milk. PMID:23349698
Phylogeny of Toll-like receptor signaling: adapting the innate response. PMID:23326591
PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset. PMID:23282181
Insights from the predicted interactions of plant derived compounds to the gluco-corticoid receptor as an alternative to dexa-methasone. PMID:23275688
FlyBase: improvements to the bibliography. PMID:23125371
The genome sequence of Propionibacterium acidipropionici provides insights into its biotechnological and industrial potential. PMID:23083487
Insights into the pathogenesis of axial spondyloarthropathy from network and pathway analysis. PMID:23046677
Separating metagenomic short reads into genomes via clustering. PMID:23009059
Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions. PMID:22963132
Genome-wide association study of obsessive-compulsive disorder. PMID:22889921
A three-dimensional topology of complex I inferred from evolutionary correlations. PMID:22857522
Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features. PMID:22848105
Chromatin organization is a major influence on regional mutation rates in human cancer cells. PMID:22820252
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. PMID:22675348
Genovar: a detection and visualization tool for genomic variants. PMID:22594998
Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations. PMID:22563243
Conservation of tubulin-binding sequences in TRPV1 throughout evolution. PMID:22496727
"Guilt by association" is the exception rather than the rule in gene networks. PMID:22479173
An examination of the OMIM database for associating mutation to a consensus reference sequence. PMID:22477700
A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses. PMID:22417913
Novel NaPi-IIc mutations causing HHRH and idiopathic hypercalciuria in several unrelated families: long-term follow-up in one kindred. PMID:22387237
Multiplex meta-analysis of RNA expression to identify genes with variants associated with immune dysfunction. PMID:22319178
S279 point mutations in Candida albicans Sterol 14-α demethylase (CYP51) reduce in vitro inhibition by fluconazole. PMID:22252802
Partition decoupling for multi-gene analysis of gene expression profiling data. PMID:22208906
Concentration dependent ion selectivity in VDAC: a molecular dynamics simulation study. PMID:22164223
Similarity of genes horizontally acquired by Escherichia coli and Salmonella enterica is evidence of a supraspecies pangenome. PMID:22128332
A unified framework for managing provenance information in translational research. PMID:22126369
Quantification of protein group coherence and pathway assignment using functional association. PMID:21929787
Ranking candidate disease genes from gene expression and protein interaction: a Katz-centrality based approach. PMID:21912686
Large-Scale Analysis of Gene Expression and Connectivity in the Rodent Brain: Insights through Data Integration. PMID:21863139
Application of computational systems biology to explore environmental toxicity hazards. PMID:21846611
The Vein Patterning 1 (VEP1) gene family laterally spread through an ecological network. PMID:21818306
Successful COG8 and PDF overlap is mediated by alterations in splicing and polyadenylation signals. PMID:21805148
Characterisation of a desmosterol reductase involved in phytosterol dealkylation in the silkworm, Bombyx mori. PMID:21738635
Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola. PMID:21738598
New structural and functional contexts of the Dx[DN]xDG linear motif: insights into evolution of calcium-binding proteins. PMID:21720552
Positional orthology: putting genomic evolutionary relationships into context. PMID:21705766
Published and perished? The influence of the searched protein database on the long-term storage of proteomics data. PMID:21700957
Sporisorium reilianum infection changes inflorescence and branching architectures of maize. PMID:21653782
OrthoList: a compendium of C. elegans genes with human orthologs. PMID:21647448
Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs. PMID:21595981
Extending biochemical databases by metabolomic surveys. PMID:21566124
Gains, losses and changes of function after gene duplication: study of the metallothionein family. PMID:21541013
An evolutionary genomic approach to identify genes involved in human birth timing. PMID:21533219
Impact of recently emerged sterol 14{alpha}-demethylase (CYP51) variants of Mycosphaerella graminicola on azole fungicide sensitivity. PMID:21478305
Data-driven high-throughput prediction of the 3-D structure of small molecules: review and progress. PMID:21417267
Vertebrate paralogous MEF2 genes: origin, conservation, and evolution. PMID:21394201
Exploring the evolutionary relationship of insulin receptor substrate family using computational biology. PMID:21364910
The human serum metabolome. PMID:21359215
Quantitative metagenomic analyses based on average genome size normalization. PMID:21317268
Structural assessment of the effects of amino acid substitutions on protein stability and protein protein interaction. PMID:21297231
Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity. PMID:21270145
MicroRNAs: Meta-controllers of gene expression in synaptic activity emerge as genetic and diagnostic markers of human disease. PMID:21256154
STITCH: algorithm to splice, trim, identify, track, and capture the uniqueness of 16S rRNAs sequence pairs using public or in-house database. PMID:21113709
OMA 2011: orthology inference among 1000 complete genomes. PMID:21113020
Characterization of the relationship between integrase, excisionase and antirepressor activities associated with a superinfecting Shiga toxin encoding bacteriophage. PMID:21062824
Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants. PMID:21044364
T1DBase: update 2011, organization and presentation of large-scale data sets for type 1 diabetes research. PMID:20937630
ChemProt: a disease chemical biology database. PMID:20935044
The BioPAX community standard for pathway data sharing. PMID:20829833
Transcript analysis of stem cells. PMID:20816160
Pathophysiological mechanisms of dominant and recessive GLRA1 mutations in hyperekplexia. PMID:20631190
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. PMID:20613790
Orthology confers intron position conservation. PMID:20598118
Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales. PMID:20576738
Reconstructing disease outbreaks from genetic data: a graph approach. PMID:20551981
When is chemical similarity significant? The statistical distribution of chemical similarity scores and its extreme values. PMID:20540577
Frog2: Efficient 3D conformation ensemble generator for small compounds. PMID:20444874
Systems biology in heart diseases. PMID:20411053
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways. PMID:20122211
A side effect resource to capture phenotypic effects of drugs. PMID:20087340
BLAST-EXPLORER helps you building datasets for phylogenetic analysis. PMID:20067610
A protocol for generating a high-quality genome-scale metabolic reconstruction. PMID:20057383
MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. PMID:20053291
Integrative approaches to the prediction of protein functions based on the feature selection. PMID:20043848
Modal codon usage: assessing the typical codon usage of a genome. PMID:20018979
Archiving next generation sequencing data. PMID:19965774
Sp2 is a maternally inherited transcription factor required for embryonic development. PMID:19959469
Integrative predictive model of coronary artery calcification in atherosclerosis. PMID:19948975
JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. PMID:19943962
Expansion of the human mitochondrial proteome by intra- and inter-compartmental protein duplication. PMID:19930686
Dynamism in gene expression across multiple studies. PMID:19920211
STITCH 2: an interaction network database for small molecules and proteins. PMID:19897548
Adenosine deamination in human transcripts generates novel microRNA binding sites. PMID:19776031
Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii. PMID:19717546
Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'. PMID:19622150
Lowering industry firewalls: pre-competitive informatics initiatives in drug discovery. PMID:19609266
The Chicken Gene Nomenclature Committee report. PMID:19607656
Automated database mediation using ontological metadata mappings. PMID:19567801
Definition, conservation and epigenetics of housekeeping and tissue-enriched genes. PMID:19534766
EDGAR: a software framework for the comparative analysis of prokaryotic genomes. PMID:19457249
Checklist for optimization and validation of real-time PCR assays. PMID:19455629
Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment. PMID:19426482
GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. PMID:19420064
SysPTM: a systematic resource for proteomic research on post-translational modifications. PMID:19366988
Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii. PMID:19359364
TFCat: the curated catalog of mouse and human transcription factors. PMID:19284633
Reconstruction of metabolic pathways for the cattle genome. PMID:19284618
A census of human transcription factors: function, expression and evolution. PMID:19274049
Prediction of interaction between small molecule and enzyme using AdaBoost. PMID:19219560
MitoMiner, an integrated database for the storage and analysis of mitochondrial proteomics data. PMID:19208617
Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology. PMID:19208187
Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays. PMID:19208186
Emergence, development and diversification of the TGF-beta signalling pathway within the animal kingdom. PMID:19192293
Phylogenetic and functional assessment of orthologs inference projects and methods. PMID:19148271
Detailed transcriptome atlas of the pancreatic beta cell. PMID:19146692
Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression. PMID:19136627
Tuning the relative affinities for activating and repressing operators of a temporally regulated restriction-modification system. PMID:19126580
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network. PMID:19094223
Molecular docking studies of dithionitrobenzoic acid and its related compounds to protein disulfide isomerase: computational screening of inhibitors to HIV-1 entry. PMID:19091013
Ortholog-based protein-protein interaction prediction and its application to inter-species interactions. PMID:19091010
Functional analysis of novel SNPs and mutations in human and mouse genomes. PMID:19091009
A snapshot of CNVs in the pig genome. PMID:19079605
Data mining of cancer vaccine trials: a bird's-eye view. PMID:19077266
Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks. PMID:19074493
Genotype-phenotype databases: challenges and solutions for the post-genomic era. PMID:19065136
SNUGB: a versatile genome browser supporting comparative and functional fungal genomics. PMID:19055845
Algorithm of OMA for large-scale orthology inference. PMID:19055798
SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. PMID:19036792
Genome and proteome annotation: organization, interpretation and integration. PMID:19019817
BloodExpress: a database of gene expression in mouse haematopoiesis. PMID:18987008
Bionemo: molecular information on biodegradation metabolism. PMID:18986994
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. PMID:18978025
In silico identification of specialized secretory-organelle proteins in apicomplexan parasites and in vivo validation in Toxoplasma gondii. PMID:18974850
Defrosting the digital library: bibliographic tools for the next generation web. PMID:18974831
Implementation of GenePattern within the Stanford Microarray Database. PMID:18953035
ATTED-II provides coexpressed gene networks for Arabidopsis. PMID:18953027
HMDB: a knowledgebase for the human metabolome. PMID:18953024
The National Center for Biotechnology Information's Protein Clusters Database. PMID:18940865
Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. PMID:18927222
miR2Disease: a manually curated database for microRNA deregulation in human disease. PMID:18927107
Whole genome survey of coding SNPs reveals a reproducible pathway determinant of Parkinson disease. PMID:18853455
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. PMID:18846089
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses. PMID:18842600
XplorSeq: a software environment for integrated management and phylogenetic analysis of metagenomic sequence data. PMID:18840282
Interspecies data mining to predict novel ING-protein interactions in human. PMID:18801192
Identification and correction of abnormal, incomplete and mispredicted proteins in public databases. PMID:18752676
Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. PMID:18728074
Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence. PMID:18705888
Variations in the ghrelin receptor gene associate with obesity and glucose metabolism in individuals with impaired glucose tolerance. PMID:18698404
Computational analysis of the human HSPH/HSPA/DNAJ family and cloning of a human HSPH/HSPA/DNAJ expression library. PMID:18686016
Genes to diseases (G2D) computational method to identify asthma candidate genes. PMID:18682798
Phylogenetic analyses suggest multiple changes of substrate specificity within the glycosyl hydrolase 20 family. PMID:18647384
Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy. PMID:18636118
An insect virus-encoded microRNA regulates viral replication. PMID:18614632
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. PMID:18613946
A maximum common substructure-based algorithm for searching and predicting drug-like compounds. PMID:18586736
The effectiveness of position- and composition-specific gap costs for protein similarity searches. PMID:18586708
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. PMID:18577208
PURE: a webserver for the prediction of domains in unassigned regions in proteins. PMID:18554415
Anni 2.0: a multipurpose text-mining tool for the life sciences. PMID:18549479
Predicting failure rate of PCR in large genomes. PMID:18492719
Automated comparative auditing of NCIT genomic roles using NCBI. PMID:18486558
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. PMID:18460543
Designating eukaryotic orthology via processed transcription units. PMID:18445630
GenoWatch: a disease gene mining browser for association study. PMID:18440974
Identification of outer membrane proteins of Mycobacterium tuberculosis. PMID:18439872
Regulation of glycan structures in animal tissues: transcript profiling of glycan-related genes. PMID:18411279
ReXSpecies--a tool for the analysis of the evolution of gene regulation across species. PMID:18410675
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering. PMID:18402669
Natural selection of protein structural and functional properties: a single nucleotide polymorphism perspective. PMID:18397526
A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1. PMID:18371204
A virtual computer lab for distance biomedical technology education. PMID:18366629
Bioinformatics prediction of overlapping frameshifted translation products in mammalian transcripts. PMID:18325113
Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. PMID:18315849
New classification of HLA-DRB1 alleles in rheumatoid arthritis susceptibility: a combined analysis of worldwide samples. PMID:18307784
Gene conversion in the rice genome. PMID:18298833
Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. PMID:18296538
Homology and phylogeny and their automated inference. PMID:18288471
Phylogenetic classification of short environmental DNA fragments. PMID:18285365
Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes. PMID:18279518
The genome landscape of ERalpha- and ERbeta-binding DNA regions. PMID:18272478
Analysis of the human kinome using methods including fold recognition reveals two novel kinases. PMID:18270584
Bioinformatics and cancer research: building bridges for translational research. PMID:18258507
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology. PMID:18254954
In silico characterization of proteins: UniProt, InterPro and Integr8. PMID:18219596
Universal seeds for cDNA-to-genome comparison. PMID:18215286
The UCSC Genome Browser Database: 2008 update. PMID:18086701
STITCH: interaction networks of chemicals and proteins. PMID:18084021
Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies. PMID:18065537
Amyotrophic lateral sclerosis: an emerging era of collaborative gene discovery. PMID:18060051
Towards completion of the Earth's proteome. PMID:18059312
The genome browser at UCSC for locating genes, and much more! PMID:18058261
TreeFam: 2008 Update. PMID:18056084
InParanoid 6: eukaryotic ortholog clusters with inparalogs. PMID:18055500
DrugBank: a knowledgebase for drugs, drug actions and drug targets. PMID:18048412
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea. PMID:18042280
CandidaDB: a multi-genome database for Candida species and related Saccharomycotina. PMID:18039716
The Pfam protein families database. PMID:18039703
Microarray expression profiles of 20.000 genes across 23 healthy porcine tissues. PMID:18030337
e-Fungi: a data resource for comparative analysis of fungal genomes. PMID:18028535
The Molecular Biology Database Collection: 2008 update. PMID:18025043
Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome. PMID:18021451
Ensembl 2008. PMID:18000006
NONCODE v2.0: decoding the non-coding. PMID:18000000
Update of ASRP: the Arabidopsis Small RNA Project database. PMID:17999994
A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures. PMID:17999775
The FTO (fat mass and obesity associated) gene codes for a novel member of the non-heme dioxygenase superfamily. PMID:17996046
MEROPS: the peptidase database. PMID:17991683
GLIDA: GPCR--ligand database for chemical genomics drug discovery--database and tools update. PMID:17986454
The HGNC Database in 2008: a resource for the human genome. PMID:17984084
An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. PMID:17984082
EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. PMID:17984073
Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. PMID:17982176
Narcisse: a mirror view of conserved syntenies. PMID:17981845
The Molecule Pages database. PMID:17965093
Exonization of active mouse L1s: a driver of transcriptome evolution? PMID:17963496
Human PAML browser: a database of positive selection on human genes using phylogenetic methods. PMID:17962310
MetaLook: a 3D visualisation software for marine ecological genomics. PMID:17953757
ChemBank: a small-molecule screening and cheminformatics resource database. PMID:17947324
Gallus GBrowse: a unified genomic database for the chicken. PMID:17933775
ATDB: a uni-database platform for animal toxins. PMID:17933766
Regulatory circuit based on autogenous activation-repression: roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system. PMID:17933763
MUGEN mouse database; animal models of human immunological diseases. PMID:17932065
COXPRESdb: a database of coexpressed gene networks in mammals. PMID:17932064
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. PMID:17925023
NORINE: a database of nonribosomal peptides. PMID:17913739
SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages. PMID:17884916
Integrating sequence and structural biology with DAS. PMID:17850653
Structural characteristics of zebrafish orthologs of adaptor molecules that associate with transmembrane immune receptors. PMID:17719728
In Silico characterization of phosphorylase kinase: evidence for an alternate intronic polyadenylation site in PHKG1. PMID:17692548
PepBank--a database of peptides based on sequence text mining and public peptide data sources. PMID:17678535
Conducting research on the web: 2007 update for the bioinformatics links directory. PMID:17586821
Three-Dimensional Phylogeny Explorer: distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization. PMID:17584922
Zscan4: a novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells. PMID:17553482
Multiple whole genome alignments and novel biomedical applications at the VISTA portal. PMID:17488840
Frog: a FRee Online druG 3D conformation generator. PMID:17485475
iHOP web services. PMID:17485473
CARGO: a web portal to integrate customized biological information. PMID:17483515
Update of the G2D tool for prioritization of gene candidates to inherited diseases. PMID:17478516
eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications. PMID:17452348
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms. PMID:17343765
Database Resources of the National Center for Biotechnology Information PubMed citations: 327.

327 articles citing: Database Resources of the National Center for Biotechnology Information

Designing of a Recombinant Multi-Epitopes Based Vaccine against Enterococcus mundtii Using Bioinformatics and Immunoinformatics Approaches. PMID:35329417
Discovery of antimicrobials by massively parallelized growth assays (Mex). PMID:35260685
Biological mechanisms of aging predict age-related disease co-occurrence in patients. PMID:35259281
Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort. PMID:35193497
SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data. PMID:35146392
The regulatory domains of the lipid exporter ABCA1 form domain swapped latches. PMID:35120130
The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity. PMID:35069509
Diverse DNA modification in marine prokaryotic and viral communities. PMID:35051998
Micronutrient supplements can promote disruptive protozoan and fungal communities in the developing infant gut. PMID:34795270
The entomopathogenic nematode Steinernema hermaphroditum is a self-fertilizing hermaphrodite and a genetically tractable system for the study of parasitic and mutualistic symbiosis. PMID:34791196
Isolation, Biochemical Characterisation and Identification of Thermotolerant and Cellulolytic Paenibacillus lactis and Bacillus licheniformis. PMID:34759764
An integrated computational framework to design a multi-epitopes vaccine against Mycobacterium tuberculosis. PMID:34753983
The GH19 Engineering Database: Sequence diversity, substrate scope, and evolution in glycoside hydrolase family 19. PMID:34699529
A Comprehensive Computer Aided Vaccine Design Approach to Propose a Multi-Epitopes Subunit Vaccine against Genus Klebsiella Using Pan-Genomics, Reverse Vaccinology, and Biophysical Techniques. PMID:34696195
Towards A Novel Multi-Epitopes Chimeric Vaccine for Simulating Strong Immune Responses and Protection against Morganella morganii. PMID:34682706
Experiment level curation of transcriptional regulatory interactions in neurodevelopment. PMID:34665801
Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period. PMID:34648730
PncsHub: a platform for annotating and analyzing non-classically secreted proteins in Gram-positive bacteria. PMID:34551435
The macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation. PMID:34548559
Antimicrobial Resistance Profiling and Phylogenetic Analysis of Neisseria gonorrhoeae Clinical Isolates From Kenya in a Resource-Limited Setting. PMID:34385981
Cell specific photoswitchable agonist for reversible control of endogenous dopamine receptors. PMID:34362914
The first complete mitochondrial genome of edible and medicinal fungus Chroogomphus rutilus (Gomphidiaceae, Boletales) and insights into its phylogeny. PMID:34350345
In Silico Analysis of Potential Outer Membrane Beta-Barrel Proteins in Aeromonas hydrophila Pangenome. PMID:34335123
Sequence variation in the β7-β8 loop of bacterial class A sortase enzymes alters substrate selectivity. PMID:34302812
Design of a High-Throughput Real-Time PCR System for Detection of Bovine Respiratory and Enteric Pathogens. PMID:34250065
Development of a Novel Multi-Epitope Vaccine Against Crimean-Congo Hemorrhagic Fever Virus: An Integrated Reverse Vaccinology, Vaccine Informatics and Biophysics Approach. PMID:34220816
The elusive parasite: comparing macroscopic, immunological, and genomic approaches to identifying malaria in human skeletal remains from Sayala, Egypt (third to sixth centuries AD). PMID:34149953
Lack of parent-of-origin effects in Nasonia jewel wasp: A replication and extension study. PMID:34111141
The T Cell Receptor (TRB) Locus in Tursiops truncatus: From Sequence to Structure of the Alpha/Beta Heterodimer in the Human/Dolphin Comparison. PMID:33919966
Easy Synthesis of Complex Biomolecular Assemblies: Wheat Germ Cell-Free Protein Expression in Structural Biology. PMID:33842544
Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects. PMID:33794662
PhyloQuant approach provides insights into Trypanosoma cruzi evolution using a systems-wide mass spectrometry-based quantitative protein profile. PMID:33707618
A nonolfactory shark adenosine receptor activates CFTR with unique pharmacology and structural features. PMID:33689481
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species. PMID:33510299
SARS-CoV-2 and other human coronaviruses: Mapping of protease recognition sites, antigenic variation of spike protein and their grouping through molecular phylogenetics. PMID:33497837
New Endohyphal Relationships between Mucoromycota and Burkholderiaceae Representatives. PMID:33483310
Metabolic Reconstruction Elucidates the Lifestyle of the Last Diplomonadida Common Ancestor. PMID:33361320
Flexible comparative genomics of prokaryotic transcriptional regulatory networks. PMID:33327941
Large expert-curated database for benchmarking document similarity detection in biomedical literature search. PMID:33326193
Computational prediction method to decipher receptor-glycoligand interactions in plant immunity. PMID:33316845
PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations. PMID:33313828
VIPERdb v3.0: a structure-based data analytics platform for viral capsids. PMID:33313778
Characterisation of plasmodial transketolases and identification of potential inhibitors: an in silico study. PMID:33256744
An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. PMID:33235280
Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises. PMID:33214563
A multiple peptides vaccine against COVID-19 designed from the nucleocapsid phosphoprotein (N) and Spike Glycoprotein (S) via the immunoinformatics approach. PMID:33200089
Determination of Genomic Epidemiology of Historical Clostridium perfringens Outbreaks in New York State by Use of Two Web-Based Platforms: National Center for Biotechnology Information Pathogen Detection and FDA GalaxyTrakr. PMID:33177125
Towards a novel peptide vaccine for Middle East respiratory syndrome coronavirus and its possible use against pandemic COVID-19. PMID:33173250
Genome Sequences of Four Strains of Acinetobacter bereziniae Isolated from Human Milk Pumped with a Personal Breast Pump and Hand-Washed Milk Collection Supplies. PMID:33122407
Database resources of the National Center for Biotechnology Information. PMID:33095870
The support of genetic evidence for cardiovascular risk induced by antineoplastic drugs. PMID:33055159
Immunoinformatics approach to understand molecular interaction between multi-epitopic regions of SARS-CoV-2 spike-protein with TLR4/MD-2 complex. PMID:33039603
The reuse of public datasets in the life sciences: potential risks and rewards. PMID:33024631
Design of novel viral attachment inhibitors of the spike glycoprotein (S) of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) through virtual screening and dynamics. PMID:32987103
Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning. PMID:32967266
Rps27a might act as a controller of microglia activation in triggering neurodegenerative diseases. PMID:32941527
Structural characterization and computational analysis of PDZ domains in Monosiga brevicollis. PMID:32914530
Revision of Coelastrella (Scenedesmaceae, Chlorophyta) and first register of this green coccoid microalga for continental Norway. PMID:32914262
Investigating Cell Signaling with Gene Expression Datasets. PMID:32855998
Sequencing the Genome of Indian Flying Fox, Natural Reservoir of Nipah Virus, Using Hybrid Assembly and Conservative Secondary Scaffolding. PMID:32849415
LAITOR4HPC: A text mining pipeline based on HPC for building interaction networks. PMID:32838742
Predicted therapeutic targets for COVID-19 disease by inhibiting SARS-CoV-2 and its related receptors. PMID:32835083
High-Throughput, Sequence-Based Analysis of the Microbiota of Greek Kefir Grains from Two Geographic Regions. PMID:32831566
Adsorption Sequencing as a Rapid Method to Link Environmental Bacteriophages to Hosts. PMID:32823052
Presence of toxin-antitoxin systems in picocyanobacteria and their ecological implications. PMID:32814864
Chronological set of E. coli O157:H7 bovine strains establishes a role for repeat sequences and mobile genetic elements in genome diversification. PMID:32807088
Sexually Dimorphic Crosstalk at the Maternal-Fetal Interface. PMID:32772088
MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding. PMID:32620910
BRIDGE - A Visual Analytics Web Tool for Barley Genebank Genomics. PMID:32595658
Bioentity2vec: Attribute- and behavior-driven representation for predicting multi-type relationships between bioentities. PMID:32533701
Transcriptome analyses suggest that changes in fungal endophyte lifestyle could be involved in grapevine bud necrosis. PMID:32528037
Sex Chromosomes and Sex Phenotype Contribute to Biased DNA Methylation in Mouse Liver. PMID:32527045
Design of a Novel Multi Epitope-Based Vaccine for Pandemic Coronavirus Disease (COVID-19) by Vaccinomics and Probable Prevention Strategy against Avenging Zoonotics. PMID:32454128
Epitope-Based Vaccine Designing of Nocardia asteroides Targeting the Virulence Factor Mce-Family Protein by Immunoinformatics Approach. PMID:32435172
Study of combining virtual screening and antiviral treatments of the Sars-CoV-2 (Covid-19). PMID:32387389
Revisiting the expression signature of pks15/1 unveils regulatory patterns controlling phenolphtiocerol and phenolglycolipid production in pathogenic mycobacteria. PMID:32379829
Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit. PMID:32351787
Structural Insights into the Mammalian Late-Stage Initiation Complexes. PMID:32268096
Taxogenomic assessment and genomic characterisation of Weissella cibaria strain 92 able to metabolise oligosaccharides derived from dietary fibres. PMID:32246087
Structural basis for substrate and product recognition in human phosphoglucomutase-1 (PGM1) isoform 2, a member of the α-D-phosphohexomutase superfamily. PMID:32221390
Cervicovaginal microbiome and natural history of HPV in a longitudinal study. PMID:32214382
Propagation of goat putative spermatogonial stem cells under growth factors defined serum-free culture conditions. PMID:32124159
Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family. PMID:32118265
A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina. PMID:32103005
A Systematic Approach to Bacterial Phylogeny Using Order Level Sampling and Identification of HGT Using Network Science. PMID:32102454
Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis. PMID:32050897
Salmonella enterica Serovar Typhimurium 14028s Genomic Regions Required for Colonization of Lettuce Leaves. PMID:32038592
Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines. PMID:32025702
Lipid and DHA-production in Aurantiochytrium sp. - Responses to nitrogen starvation and oxygen limitation revealed by analyses of production kinetics and global transcriptomes. PMID:31857635
Investigations into a putative role for the novel BRASSIKIN pseudokinases in compatible pollen-stigma interactions in Arabidopsis thaliana. PMID:31829135
A Novel Genus of Actinobacterial Tectiviridae. PMID:31817897
Tasks, Techniques, and Tools for Genomic Data Visualization. PMID:31768085
Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader 'Candidatus Leucobacter sulfamidivorax' strain GP. PMID:31752666
Development of a high-throughput real-time PCR system for detection of enzootic pathogens in pigs. PMID:31752620
PCOSBase: a manually curated database of polycystic ovarian syndrome. PMID:31725861
Genome Assembly of the Common Pheasant Phasianus colchicus: A Model for Speciation and Ecological Genomics. PMID:31713630
GenBank. PMID:31665464
Comparative Mitochondrial Genome Analysis of Two Ectomycorrhizal Fungi (Rhizopogon) Reveals Dynamic Changes of Intron and Phylogenetic Relationships of the Subphylum Agaricomycotina. PMID:31635252
Computational approaches to therapeutic antibody design: established methods and emerging trends. PMID:31626279
A Single Transcription Factor (PDD1) Determines Development and Yield of Winter Mushroom (Flammulina velutipes). PMID:31604770
Structural basis for chain release from the enacyloxin polyketide synthase. PMID:31548674
Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci. PMID:31537640
Distinct evolution of toll-like receptor signaling pathway genes in cetaceans. PMID:31535317
NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis. PMID:31530798
Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation. PMID:31513639
Lateral Acquisitions Repeatedly Remodel the Oxygen Detoxification Pathway in Diplomonads and Relatives. PMID:31504492
Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center. PMID:31477167
A Structure-Informed Atlas of Human-Virus Interactions. PMID:31474372
Carbon assimilation profiles of mucoralean fungi show their metabolic versatility. PMID:31413281
Genome-Wide Comparative Analysis of HIF Binding Sites in Cyprinus Carpio for In Silico Identification of Functional Hypoxia Response Elements. PMID:31379925
Low income countries have the highest percentages of open access publication: A systematic computational analysis of the biomedical literature. PMID:31356618
Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line ΔXT/FT. PMID:31324144
Discovery of receptor-ligand interfaces in the immunoglobulin superfamily. PMID:31298437
Waterlogging affects plant morphology and the expression of key genes in tef (Eragrostis tef). PMID:31245721
Genome-wide alternative splicing landscapes modulated by biotrophic sugarcane smut pathogen. PMID:31222001
Chickspress: a resource for chicken gene expression. PMID:31210271
Characterization of Flagellotropic, Chi-Like Salmonella Phages Isolated from Thai Poultry Farms. PMID:31195709
A Systems Pharmacology Approach Uncovers Wogonoside as an Angiogenesis Inhibitor of Triple-Negative Breast Cancer by Targeting Hedgehog Signaling. PMID:31178408
The geographic and topical landscape of medical education research. PMID:31170974
Protocols for yTREX/Tn5-based gene cluster expression in Pseudomonas putida. PMID:31162833
Common Regulatory Pathways Mediate Activity of MicroRNAs Inducing Cardiomyocyte Proliferation. PMID:31141697
Comparative Genomics of Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1, Halophilic Chemolithoautotrophic Sulfur-Oxidizing Gammaproteobacteria Capable of Using Thiocyanate as Energy Source. PMID:31118923
Entrezpy: a Python library to dynamically interact with the NCBI Entrez databases. PMID:31077305
Identification of a role for an E6-like 1 gene in early pollen-stigma interactions in Arabidopsis thaliana. PMID:31069543
Antimicrobial Resistance Genes, Cassettes, and Plasmids Present in Salmonella enterica Associated With United States Food Animals. PMID:31057528
Genomic Comparison Reveals Natural Occurrence of Clinically Relevant Multidrug-Resistant Extended-Spectrum-β-Lactamase-Producing Escherichia coli Strains. PMID:31053578
Automated assessment of biological database assertions using the scientific literature. PMID:31035936
DNAscan: personal computer compatible NGS analysis, annotation and visualisation. PMID:31029080
A systematic approach re-analyzing the effects of temperature disturbance on the microbial community of mesophilic anaerobic digestion. PMID:31024021
Bioinformatic and mutational studies of related toxin-antitoxin pairs in Mycobacterium tuberculosis predict and identify key functional residues. PMID:31018964
Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli. PMID:31014247
Novel Molecular Signatures in the PIP4K/PIP5K Family of Proteins Specific for Different Isozymes and Subfamilies Provide Important Insights into the Evolutionary Divergence of this Protein Family. PMID:31010098
FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization. PMID:31004476
Micro-evolution of three Streptococcus species: selection, antigenic variation, and horizontal gene inflow. PMID:30917781
Advancing Computational Toxicology in the Big Data Era by Artificial Intelligence: Data-Driven and Mechanism-Driven Modeling for Chemical Toxicity. PMID:30907586
G-Quadruplexes in Human Ribosomal RNA. PMID:30885721
'Genome skimming' with the MinION hand-held sequencer identifies CITES-listed shark species in India's exports market. PMID:30872700
Transposable elements contribute to fungal genes and impact fungal lifestyle. PMID:30867521
Choice of species affects phylogenetic stability of deep nodes: an empirical example in Terrabacteria. PMID:30859177
Evolution and Diversification of FRUITFULL Genes in Solanaceae. PMID:30846991
Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data. PMID:30821816
Impact of Physical Exercise on Growth and Progression of Cancer in Rodents-A Systematic Review and Meta-Analysis. PMID:30805305
Identification of the first endolysin Cell Binding Domain (CBD) targeting Paenibacillus larvae. PMID:30796258
Correlation-adjusted regression survival scores for high-dimensional variable selection. PMID:30793795
Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway. PMID:30789903
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms. PMID:30770768
Design and Assessment of Species-Level qPCR Primers Targeting Comammox. PMID:30766515
The tyrosine transporter of Toxoplasma gondii is a member of the newly defined apicomplexan amino acid transporter (ApiAT) family. PMID:30742695
Utilization of selenocysteine in early-branching fungal phyla. PMID:30742068
The Algicidal Bacterium Kordia algicida Shapes a Natural Plankton Community. PMID:30737345
Interaction of rs316019 variants of SLC22A2 with metformin and other drugs- an in silico analysis. PMID:30733798
Autophagy and Apoptosis Specific Knowledgebases-guided Systems Pharmacology Drug Research. PMID:30727895
Conservation and divergence of the p53 gene regulatory network between mice and humans. PMID:30710145
Towards comprehensive annotation of Drosophila melanogaster enzymes in FlyBase. PMID:30689844
Analyses of four new Caulobacter Phicbkviruses indicate independent lineages. PMID:30657445
Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community. PMID:30635580
Genome-Wide Characterization and Identification of Trihelix Transcription Factor and Expression Profiling in Response to Abiotic Stresses in Rice (Oryza sativa L.). PMID:30634597
DLAD4U: deriving and prioritizing disease lists from PubMed literature. PMID:30591010
Abscopal Effect in Non-injected Tumors Achieved with Cytokine-Armed Oncolytic Adenovirus. PMID:30569015
Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria. PMID:30566500
"Omics" data integration and functional analyses link Enoyl-CoA hydratase, short chain 1 to drug refractory dilated cardiomyopathy. PMID:30541556
Social environment affects the transcriptomic response to bacteria in ant queens. PMID:30519425
The afc antifungal activity cluster, which is under tight regulatory control of ShvR, is essential for transition from intracellular persistence of Burkholderia cenocepacia to acute pro-inflammatory infection. PMID:30513124
Emydomyces testavorans, a New Genus and Species of Onygenalean Fungus Isolated from Shell Lesions of Freshwater Aquatic Turtles. PMID:30487306
Genetically encodable bioluminescent system from fungi. PMID:30478037
Plasma proteome correlates of lipid and lipoprotein: biomarkers of metabolic diversity and inflammation in children of rural Nepal. PMID:30473544
Down-Selection and Outdoor Evaluation of Novel, Halotolerant Algal Strains for Winter Cultivation. PMID:30459782
Lactobacillus elicits a 'Marmite effect' on the chicken cecal microbiome. PMID:30455975
Genome-wide association analysis identifies SNPs predictive of in vitro leukemic cell sensitivity to cytarabine in pediatric AML. PMID:30405880
Exploring Seipin: From Biochemistry to Bioinformatics Predictions. PMID:30402103
Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities. PMID:30389965
Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis. PMID:30381904
Seven new species of Cichlidogyrus Paperna, 1960 (Monogenea: Dactylogyridae) parasitizing the gills of Congolese cichlids from northern Lake Tanganyika. PMID:30370182
Comparative Genomics of Aspergillus flavus S and L Morphotypes Yield Insights into Niche Adaptation. PMID:30361280
Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress. PMID:30359441
Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data. PMID:30359297
liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies. PMID:30357370
Identification and ultrastructural characterization of Acanthamoeba bacterial endocytobionts belonging to the Alphaproteobacteria class. PMID:30356282
SeqOthello: querying RNA-seq experiments at scale. PMID:30340508
Thalia: semantic search engine for biomedical abstracts. PMID:30329013
Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements. PMID:30250208
A reverse metabolic approach to weaning: in silico identification of immune-beneficial infant gut bacteria, mining their metabolism for prebiotic feeds and sourcing these feeds in the natural product space. PMID:30241567
Proline provides site-specific flexibility for in vivo collagen. PMID:30218106
Conditional and interaction gene-set analysis reveals novel functional pathways for blood pressure. PMID:30218068
The Thaumarchaeon N. gargensis carries functional bioABD genes and has a promiscuous E. coli ΔbioH-complementing esterase EstN1. PMID:30218044
Validation of Internal Control Genes for Quantitative Real-Time PCR Gene Expression Analysis in Morchella. PMID:30213125
Systematic Analysis of Mouse Genome Reveals Distinct Evolutionary and Functional Properties Among Circadian and Ultradian Genes. PMID:30190679
Multiple Histone Methyl-Lysine Readers Ensure Robust Development and Germline Immortality in Caenorhabditis elegans. PMID:30185429
High-resolution ISR amplicon sequencing reveals personalized oral microbiome. PMID:30185233
Transcriptomic Evidence for Alterations in Astrocytes and Parvalbumin Interneurons in Subjects With Bipolar Disorder and Schizophrenia. PMID:30177255
Identification of a Kdn biosynthesis pathway in the haptophyte Prymnesium parvum suggests widespread sialic acid biosynthesis among microalgae. PMID:30171074
Mobile Elements Shape Plastome Evolution in Ferns. PMID:30165616
Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale. PMID:30151051
A miR172 target-deficient AP2-like gene correlates with the double flower phenotype in roses. PMID:30150746
Carcinogenic Pesticide Control via Hijacking Endosymbiosis; The Paradigm of DSB-A from Wolbachia pipientis for the Management of Otiorhynchus singularis. PMID:30150426
Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation. PMID:30143032
bioSyntax: syntax highlighting for computational biology. PMID:30134911
An Orphan MbtH-Like Protein Interacts with Multiple Nonribosomal Peptide Synthetases in Myxococcus xanthus DK1622. PMID:30126939
Genome-wide identification and analysis of the ALTERNATIVE OXIDASE gene family in diploid and hexaploid wheat. PMID:30074999
PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data. PMID:30049792
Cytological analysis and structural quantification of FtsZ1-2 and FtsZ2-1 network characteristics in Physcomitrella patens. PMID:30042487
Multifaceted DNA metabarcoding: Validation of a noninvasive, next-generation approach to studying bat populations. PMID:30026801
De novo profile generation based on sequence context specificity with the long short-term memory network. PMID:30021530
The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals. PMID:30017480
AnnotationBustR: an R package to extract subsequences from GenBank annotations. PMID:30002984
iSEE: Interactive SummarizedExperiment Explorer. PMID:30002819
Harmine, a dual-specificity tyrosine phosphorylation-regulated kinase (DYRK) inhibitor induces caspase-mediated apoptosis in neuroblastoma. PMID:29977157
Drosophila melanogaster establishes a species-specific mutualistic interaction with stable gut-colonizing bacteria. PMID:29975680
Brief Report: A Survey of Autism Research Priorities Across a Diverse Community of Stakeholders. PMID:29948533
The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis. PMID:29947739
MPD: a pathogen genome and metagenome database. PMID:29917040
The comparative genomics of Bifidobacterium callitrichos reflects dietary carbohydrate utilization within the common marmoset gut. PMID:29906260
Cellular stress alters 3'UTR landscape through alternative polyadenylation and isoform-specific degradation. PMID:29891946
Expanding the horizons of microRNA bioinformatics. PMID:29871895
Evolutionary divergence of 3' UTRs in cichlid fishes. PMID:29866078
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species. PMID:29859036
Gene family innovation, conservation and loss on the animal stem lineage. PMID:29848444
Translation: The Universal Structural Core of Life. PMID:29788252
Isolation and characterization of Bacillus sp. GFP-2, a novel Bacillus strain with antimicrobial activities, from Whitespotted bamboo shark intestine. PMID:29785529
The Role of DNA Methylation in Renal Cell Carcinoma. PMID:29777398
Core non-coding RNAs of Piscirickettsia salmonis. PMID:29768466
Non-senescent Hydra tolerates severe disturbances in the nuclear lamina. PMID:29754147
iPath3.0: interactive pathways explorer v3. PMID:29718427
Environmental fluctuations accelerate molecular evolution of thermal tolerance in a marine diatom. PMID:29712900
Identification of errors in the IEDB using ontologies. PMID:29688357
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. PMID:29688354
Endocrine disruptor exposure during development increases incidence of uterine fibroids by altering DNA repair in myometrial stem cells. PMID:29688260
Enterobacter cloacae Complex Isolated from Shrimps from Vietnam Carrying blaIMI-1 Resistant to Carbapenems but Not Cephalosporins. PMID:29686153
DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP. PMID:29684008
Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry. PMID:29667164
Role of Neuraminidase-Producing Bacteria in Exposing Cryptic Carbohydrate Receptors for Streptococcus gordonii Adherence. PMID:29661931
Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis. PMID:29636073
Zinc is an inhibitor of the LdtR transcriptional activator. PMID:29634775
Biology in Bloom: A Primer on the Arabidopsis thaliana Model System. PMID:29618591
Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus). PMID:29580201
ProtaBank: A repository for protein design and engineering data. PMID:29575358
A Metagenome-Based Investigation of Gene Relationships for Non-Substrate-Associated Microbial Phosphorus Cycling in the Water Column of Streams and Rivers. PMID:29569048
Ten steps to get started in Genome Assembly and Annotation. PMID:29568489
Maternal 5mCpG Imprints at the PARD6G-AS1 and GCSAML Differentially Methylated Regions Are Decoupled From Parent-of-Origin Expression Effects in Multiple Human Tissues. PMID:29545821
A FAIR guide for data providers to maximise sharing of human genomic data. PMID:29543799
IMPPAT: A curated database of Indian Medicinal Plants, Phytochemistry And Therapeutics. PMID:29531263
Overview of Oxidative Stress Response Genes in Selected Halophilic Fungi. PMID:29509668
Finished Genome Sequence of a Polyurethane-Degrading Pseudomonas Isolate. PMID:29496829
Genome-reconstruction for eukaryotes from complex natural microbial communities. PMID:29496730
Nucleotide Sequence Database Comparison for Routine Dermatophyte Identification by Internal Transcribed Spacer 2 Genetic Region DNA Barcoding. PMID:29491019
Evolution of pyrrolizidine alkaloid biosynthesis in Apocynaceae: revisiting the defence de-escalation hypothesis. PMID:29479722
Abstract Sifter: a comprehensive front-end system to PubMed. PMID:29479422
Bioinformatics for Prohormone and Neuropeptide Discovery. PMID:29476505
A High-Throughput Approach for Identification of Nontuberculous Mycobacteria in Drinking Water Reveals Relationship between Water Age and Mycobacterium avium. PMID:29440575
New Insights into the Function and Global Distribution of Polyethylene Terephthalate (PET)-Degrading Bacteria and Enzymes in Marine and Terrestrial Metagenomes. PMID:29427431
Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements. PMID:29416569
Comparative analysis of Salivette® and paraffin gum preparations for establishment of a metaproteomics analysis pipeline for stimulated human saliva. PMID:29410770
Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization. PMID:29375774
Diversity of Cell Wall Related Proteins in Human Pathogenic Fungi. PMID:29371499
Identification of 22q13 genes most likely to contribute to Phelan McDermid syndrome. PMID:29358616
Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance. PMID:29346541
The PEG-responding desiccome of the alder microsymbiont Frankia alni. PMID:29335550
Sex differences in the late first trimester human placenta transcriptome. PMID:29335024
Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation. PMID:29329394
The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish. PMID:29304078
Twenty-seven low-copy nuclear primers for Lindera obtusiloba (Lauraceae): A Tertiary relict species in East Asia. PMID:29299398
14-3-3ε is a nuclear matrix protein, and its altered expression and localization are associated with curcumin-induced apoptosis of MG-63 cells. PMID:29285195
MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data. PMID:29280960
Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems. PMID:29263101
Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone. PMID:29259587
Insights into origin and evolution of α-proteobacterial gene transfer agents. PMID:29250433
Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium". PMID:29247059
Burkholderia stabilis outbreak associated with contaminated commercially-available washing gloves, Switzerland, May 2015 to August 2016. PMID:29233255
Conserved Gene Microsynteny Unveils Functional Interaction Between Protein Disulfide Isomerase and Rho Guanine-Dissociation Inhibitor Families. PMID:29222525
Annotating gene sets by mining large literature collections with protein networks. PMID:29218918
A comparative analysis of nonhost resistance across the two Triticeae crop species wheat and barley. PMID:29202692
Antimicrobial resistance and prevalence of CvfB, SEK and SEQ genes among Staphylococcus aureus isolates from paediatric patients with bloodstream infections. PMID:29201229
The OncoPPi Portal: an integrative resource to explore and prioritize protein-protein interactions for cancer target discovery. PMID:29186335
MVP: a microbe-phage interaction database. PMID:29177508
Optical Control of Dopamine Receptors Using a Photoswitchable Tethered Inverse Agonist. PMID:29166564
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database. PMID:29145643
Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics. PMID:29140520
GenBank. PMID:29140468
PRODORIC2: the bacterial gene regulation database in 2018. PMID:29136200
A Role of Sp1 Binding Motifs in Basal and Large T-Antigen-Induced Promoter Activities of Human Polyomavirus HPyV9 and Its Variant UF-1. PMID:29135936
Insights from the Genomes of Microbes Thriving in Uranium-Enriched Sediments. PMID:29128951
PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology. PMID:29126216
Molecular and serological detection of bovine babesiosis in Indonesia. PMID:29110723
iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations. PMID:29106644
ASpedia: a comprehensive encyclopedia of human alternative splicing. PMID:29106599
A comparative study of sequence- and structure-based features of small RNAs and other RNAs of bacteria. PMID:29099311
Quantitative and Systems Pharmacology 3. Network-Based Identification of New Targets for Natural Products Enables Potential Uses in Aging-Associated Disorders. PMID:29093681
Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse. PMID:29082235
Genome Variation Map: a data repository of genome variations in BIG Data Center. PMID:29069473
OverGeneDB: a database of 5' end protein coding overlapping genes in human and mouse genomes. PMID:29069459
The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoire. PMID:29055088
A Systematic Review of Computational Drug Discovery, Development, and Repurposing for Ebola Virus Disease Treatment. PMID:29053626
SCPortalen: human and mouse single-cell centric database. PMID:29045713
The major outer sheath protein forms distinct conformers and multimeric complexes in the outer membrane and periplasm of Treponema denticola. PMID:29038532
TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms. PMID:29037173
Database Resources of the BIG Data Center in 2018. PMID:29036542
Plantaricyclin A, a Novel Circular Bacteriocin Produced by Lactobacillus plantarum NI326: Purification, Characterization, and Heterologous Production. PMID:29030449
Structural insights into marine carbohydrate degradation by family GH16 κ-carrageenases. PMID:29030427
Fine mapping of a QTL affecting levels of skatole on pig chromosome 7. PMID:29020941
Differential Expression Profile of lncRNAs from Primary Human Hepatocytes Following DEET and Fipronil Exposure. PMID:28991164
EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. PMID:28985416
Draft Genome Sequence of Gordonia lacunae BS2T. PMID:28982989
Trichoplax adhaerens reveals a network of nuclear receptors sensitive to 9-cis-retinoic acid at the base of metazoan evolution. PMID:28975052
Sensitive Genotyping of Foodborne-Associated Human Noroviruses and Hepatitis A Virus Using an Array-Based Platform. PMID:28930175
The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes. PMID:28928211
N-terminomics identifies widespread endoproteolysis and novel methionine excision in a genome-reduced bacterial pathogen. PMID:28894154
Identification of Secondary Metabolite Gene Clusters in the Pseudovibrio Genus Reveals Encouraging Biosynthetic Potential toward the Production of Novel Bioactive Compounds. PMID:28868049
A widespread family of polymorphic toxins encoded by temperate phages. PMID:28851366
Current Status and Future Prospects of Marine Natural Products (MNPs) as Antimicrobials. PMID:28846659
Population genetic structure of Guiana dolphin (Sotalia guianensis) from the southwestern Atlantic coast of Brazil. PMID:28837691
DNA helix: the importance of being AT-rich. PMID:28836096
Fungal lifestyle reflected in serine protease repertoire. PMID:28831173
Co-occurrence of colistin-resistance genes mcr-1 and mcr-3 among multidrug-resistant Escherichia coli isolated from cattle, Spain, September 2015. PMID:28797328
Adaptation of the Pivotal-Differential Genome Pattern for the Induction of Intergenomic Chromosome Recombination in Hybrids of Synthetic Amphidiploids within Triticeae Tribe. PMID:28791037
Direct Identification of Functional Amyloid Proteins by Label-Free Quantitative Mass Spectrometry. PMID:28777328
Confirmation that MAT1A p.Ala259Val mutation causes autosomal dominant hypermethioninemia. PMID:28748147
Recent Advances in Conotoxin Classification by Using Machine Learning Methods. PMID:28672838
Type VI Secretion Effectors: Methodologies and Biology. PMID:28664151
Comparative analysis of genes frequently regulated by drugs based on connectivity map transcriptome data. PMID:28575118
MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures. PMID:28574982
Complete genome sequences of two novel autographiviruses infecting a bacterium from the Pseudomonas fluorescens group. PMID:28551853
Last rolls of the yoyo: Assessing the human canonical protein count. PMID:28529709
The use of informativity in the development of robust viromics-based examinations. PMID:28480148
RegulatorTrail: a web service for the identification of key transcriptional regulators. PMID:28472408
From Marine Venoms to Drugs: Efficiently Supported by a Combination of Transcriptomics and Proteomics. PMID:28358320
Multilaboratory Survey To Evaluate Salmonella Prevalence in Diarrheic and Nondiarrheic Dogs and Cats in the United States between 2012 and 2014. PMID:28202802
Probiotics, D-Lactic acidosis, oxidative stress and strain specificity. PMID:28080206

Database resources of the National Center for Biotechnology Information PubMed citations: 324.

Database resources of the National Center for Biotechnology Information PubMed citations: 301.

Database resources of the National Center for Biotechnology Information PubMed citations: 258.

Database resources of the National Center for Biotechnology Information PubMed citations: 190.

Database resources of the National Center for Biotechnology Information PubMed citations: 180.

Database resources of the National Center for Biotechnology Information PubMed citations: 162.

Database resources of the National Center for Biotechnology Information PubMed citations: 146.

Database resources of the National Center for Biotechnology Information PubMed citations: 86.

Database resources of the national center for biotechnology information PubMed citations: 9.

http://dx.doi.org/10.1093/nar/gkaa892

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bioassays
metasource: re3data.org
version: re3data.org: NCBI; editing status 2021-09-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37G7F last accessed: 2022-11-04

blast
metasource: re3data.org
version: re3data.org: NCBI; editing status 2021-09-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37G7F last accessed: 2022-11-04

dna
metasource: re3data.org
version: re3data.org: NCBI; editing status 2021-09-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37G7F last accessed: 2022-11-04

genes
metasource: re3data.org
version: re3data.org: NCBI; editing status 2021-09-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37G7F last accessed: 2022-11-04

genomes
metasource: re3data.org
version: re3data.org: NCBI; editing status 2021-09-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37G7F last accessed: 2022-11-04

proteins
metasource: re3data.org
version: re3data.org: NCBI; editing status 2021-09-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37G7F last accessed: 2022-11-04

sequence analysis
metasource: re3data.org
version: re3data.org: NCBI; editing status 2021-09-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37G7F last accessed: 2022-11-04

taxonomy
metasource: re3data.org
version: re3data.org: NCBI; editing status 2021-09-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R37G7F last accessed: 2022-11-04

data integration and warehousing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

database management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

data mining
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

rare diseases
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:09.686544

bioassays blast dna gene genomes proteins sequence analysis taxonomy data integration and warehousing data management data mining molecular interactions, pathways and networks rare diseases

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