RegPhos

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RegPhos

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.885175

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regphos

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.885175

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Other names: regphos

Regulatory Network in Protein Phosphorylation

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Publications:

Publications

More detailed information about this field from each metasource. ×

RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans
PMID: 21037261

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.885175

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http://dx.doi.org/10.1093/nar/gkq970

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans PubMed citations: 38.

  38 articles citing: RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans

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  dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications. PMID:34788852

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  Signaling defects associated with insulin resistance in nondiabetic and diabetic individuals and modification by sex. PMID:34506305

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  Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA). PMID:34238254

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  Temporal dynamics of the host molecular responses underlying severe COVID-19 progression and disease resolution. PMID:33691247

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  GasPhos: Protein Phosphorylation Site Prediction Using a New Feature Selection Approach with a GA-Aided Ant Colony System. PMID:33114312

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  A Cell-Autonomous Signature of Dysregulated Protein Phosphorylation Underlies Muscle Insulin Resistance in Type 2 Diabetes. PMID:32888406

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  KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins. PMID:32753030

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  Using phosphoproteomics data to understand cellular signaling: a comprehensive guide to bioinformatics resources. PMID:32676006

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  piNET: a versatile web platform for downstream analysis and visualization of proteomics data. PMID:32469073

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  Capsule network for protein post-translational modification site prediction. PMID:30520972

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  dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications. PMID:30418626

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  Serine/threonine kinase 32C is overexpressed in bladder cancer and contributes to tumor progression. PMID:30359551

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  Computational Model of Chimeric Antigen Receptors Explains Site-Specific Phosphorylation Kinetics. PMID:30197180

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  PhosContext2vec: a distributed representation of residue-level sequence contexts and its application to general and kinase-specific phosphorylation site prediction. PMID:29844483

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  Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions. PMID:29322920

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  MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction. PMID:29036382

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  Mapping Biological Networks from Quantitative Data-Independent Acquisition Mass Spectrometry: Data to Knowledge Pipelines. PMID:28150249

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  K-BILDS: A Kinase Substrate Discovery Tool. PMID:27860220

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  SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites. PMID:26819243

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  A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases. PMID:26818115

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  A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs. PMID:26680539

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  The Cardiac Stress Response Factor Ms1 Can Bind to DNA and Has a Function in the Nucleus. PMID:26656831

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  dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins. PMID:26578568

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  Study of phosphorylation events for cancer diagnoses and treatment. PMID:26055493

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  A grammar inference approach for predicting kinase specific phosphorylation sites. PMID:25886273

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  Characterization and identification of protein O-GlcNAcylation sites with substrate specificity. PMID:25521204

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  dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation. PMID:25399423

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  Exploiting holistic approaches to model specificity in protein phosphorylation. PMID:25324856

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  RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals. PMID:24771658

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  Incorporating substrate sequence motifs and spatial amino acid composition to identify kinase-specific phosphorylation sites on protein three-dimensional structures. PMID:24564522

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  ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins. PMID:24564381

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  PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data. PMID:23832245

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  EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC. PMID:23283513

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  DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. PMID:23193290

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  Functional analyses of endometriosis-related polymorphisms in the estrogen synthesis and metabolism-related genes. PMID:23139742

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  Identifying protein phosphorylation sites with kinase substrate specificity on human viruses. PMID:22844408

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  Investigation and identification of protein γ-glutamyl carboxylation sites. PMID:22372765

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  The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
• http://dx.doi.org/10.1093/nar/gkq970

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metabolic and signaling pathways

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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signalling pathways

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.885175

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protein interactions

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.885175

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.885175

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gene expression

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.885175

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proteomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.885175

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metabolic and signaling pathways signalling pathways molecular interactions, pathways and networks protein interaction proteins gene expression proteomics