HitPredict

Names
More detailed information about this field from each metasource.

HitPredict
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.681594

hitpredict
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.681594

Other names: hitpredict

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Quality assessed protein-protein interactions in 9 species

Webpage:

http://hintdb.hgc.jp/htp/

Publications:

Publications
More detailed information about this field from each metasource.

HitPredict: a database of quality assessed protein-protein interactions in nine species
PMID: 20947562
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.681594

http://dx.doi.org/10.1093/nar/gkq897
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

HitPredict: a database of quality assessed protein-protein interactions in nine species PubMed citations: 43.

43 articles citing: HitPredict: a database of quality assessed protein-protein interactions in nine species

Significance of Parkinson Family Genes in the Prognosis and Treatment Outcome Prediction for Lung Adenocarcinoma. PMID:34616772
Proteomimetic surface fragments distinguish targets by function. PMID:34094300
Integrated network analysis reveals new genes suggesting COVID-19 chronic effects and treatment. PMID:33569598
Integrative analysis of transcriptomic data for identification of T-cell activation-related mRNA signatures indicative of preterm birth. PMID:33504832
Predicted rat interactome database and gene set linkage analysis. PMID:33216897
LRRK2 mediates microglial neurotoxicity via NFATc2 in rodent models of synucleinopathies. PMID:33055242
Downregulation of CENPF Remodels Prostate Cancer Cells and Alters Cellular Metabolism. PMID:30957416
Identification of genes required for eye development by high-throughput screening of mouse knockouts. PMID:30588515
Centromere protein F (CENPF), a microtubule binding protein, modulates cancer metabolism by regulating pyruvate kinase M2 phosphorylation signaling. PMID:30526248
Establishment of stably expandable induced myogenic stem cells by four transcription factors. PMID:30361642
Laplacian mixture modeling for network analysis and unsupervised learning on graphs. PMID:30273384
PPInS: a repository of protein-protein interaction sitesbase. PMID:30127348
Functional Constraints on Replacing an Essential Gene with Its Ancient and Modern Homologs. PMID:28851849
Characterization of developmental defects in the forebrain resulting from hyperactivated mTOR signaling by integrative analysis of transcriptomic and proteomic data. PMID:28588230
HAPPI-2: a Comprehensive and High-quality Map of Human Annotated and Predicted Protein Interactions. PMID:28212602
Prediction of Protein-Protein Interactions by Evidence Combining Methods. PMID:27879651
Multi-label ℓ2-regularized logistic regression for predicting activation/inhibition relationships in human protein-protein interaction networks. PMID:27819359
Potential Function of Exogenous Vimentin on the Activation of Wnt Signaling Pathway in Cancer Cells. PMID:27698922
Disrupted cooperation between transcription factors across diverse cancer types. PMID:27496222
APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks. PMID:27131791
HitPredict version 4: comprehensive reliability scoring of physical protein-protein interactions from more than 100 species. PMID:26708988
SPECTRA: An Integrated Knowledge Base for Comparing Tissue and Tumor-Specific PPI Networks in Human. PMID:26005672
A visual review of the interactome of LRRK2: Using deep-curated molecular interaction data to represent biology. PMID:25648416
TimeXNet: identifying active gene sub-networks using time-course gene expression profiles. PMID:25522063
ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis. PMID:25348397
Identification of functional modules by integration of multiple data sources using a Bayesian network classifier. PMID:24736851
Protein-protein interaction detection: methods and analysis. PMID:24693427
Screening of differentially expressed genes associated with non-union skeletal fractures and analysis with a DNA microarray. PMID:24520254
Computational developments in microRNA-regulated protein-protein interactions. PMID:24507415
Innate immunity interactome dynamics. PMID:24453478
Linking transcriptional changes over time in stimulated dendritic cells to identify gene networks activated during the innate immune response. PMID:24244133
Screening of key genes in gastric cancer with DNA microarray analysis. PMID:24093889
C-element: a new clustering algorithm to find high quality functional modules in PPI networks. PMID:24039752
Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS. PMID:24015873
Marker gene screening for human mesenchymal stem cells in early osteogenic response to bone morphogenetic protein 6 with DNA microarray. PMID:23799295
Screening of osteoprotegerin-related feature genes in osteoporosis and functional analysis with DNA microarray. PMID:23731710
Predicting physical interactions between protein complexes. PMID:23438732
Disentangling function from topology to infer the network properties of disease genes. PMID:23324116
STRING v9.1: protein-protein interaction networks, with increased coverage and integration. PMID:23203871
Global network alignment using multiscale spectral signatures. PMID:23047556
Simulated evolution of protein-protein interaction networks with realistic topology. PMID:22768057
Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks. PMID:22369639
IMID: integrated molecular interaction database. PMID:22238258
http://dx.doi.org/10.1093/nar/gkq897

Tags:

Tags
More detailed information about this field from each metasource.

metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein-protein interactions
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.681594

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.681594

protein interaction experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.681594

proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:27.681594

metabolic and signaling pathways protein-protein interactions protein interaction molecular interactions, pathways and networks protein interaction experiment proteins

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Dockground

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InterDom

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GWIDD

PIG - Pathogen Interaction Gateway

KUPS