SALAD

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SALAD

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.443859

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salad

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.443859

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Other names: salad

It is a unique comparative genomics database from plant-genome-based proteome data sets. Evolutionarily conserved motifs were extracted by MEME software from protein-sequence annotation groups selected by BLASTP from the proteome data sets of 10 species: rice, sorghum, Arabidopsis thaliana, grape, a lycophyte, a moss, 3 algae, and yeast. Similarity clustering of each protein group was performed by pairwise scoring of the motif patterns of the sequences.

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Publications

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SALAD database: a motif-based database of protein annotations for plant comparative genomics
PMID: 19854933

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.443859

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• SALAD database: a motif-based database of protein annotations for plant comparative genomics PubMed citations: 34.

  34 articles citing: SALAD database: a motif-based database of protein annotations for plant comparative genomics

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  Integrating GWAS and transcriptomics to identify genes involved in seed dormancy in rice. PMID:34312681

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  Transcriptome analysis unravels RNAi pathways genes and putative expansion of CYP450 gene family in cotton leafhopper Amrasca biguttula (Ishida). PMID:34091816

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  Genes of the RAV Family Control Heading Date and Carpel Development in Rice. PMID:32554473

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  RNA sequencing, selection of reference genes and demonstration of feeding RNAi in Thrips tabaci (Lind.) (Thysanoptera: Thripidae). PMID:30777032

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  Development and evaluation of novel salt-tolerant Eucalyptus trees by molecular breeding using an RNA-Binding-Protein gene derived from common ice plant (Mesembryanthemum crystallinum L.). PMID:30230168

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  Identification of an algal xylan synthase indicates that there is functional orthology between algal and plant cell wall biosynthesis. PMID:29460505

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  High Temperature-Induced Expression of Rice α-Amylases in Developing Endosperm Produces Chalky Grains. PMID:29270189

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  Identification and evolution of a plant cell wall specific glycoprotein glycosyl transferase, ExAD. PMID:28358137

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  Computational Tools for Genomic Studies in Plants. PMID:28217007

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  Alanine aminotransferase controls seed dormancy in barley. PMID:27188711

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  SpinachDB: A Well-Characterized Genomic Database for Gene Family Classification and SNP Information of Spinach. PMID:27148975

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  Structure, function, and evolution of plant NIMA-related kinases: implication for phosphorylation-dependent microtubule regulation. PMID:26354760

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  Phylogenomics databases for facilitating functional genomics in rice. PMID:26223238

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  Oil body-mediated defense against fungi: From tissues to ecology. PMID:25764319

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  Comparative analysis of the RTFL peptide family on the control of plant organogenesis. PMID:25701405

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  Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes. PMID:25435546

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  Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697

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  Arabidopsis WIND1 induces callus formation in rapeseed, tomato, and tobacco. PMID:24389814

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  MEGANTE: a web-based system for integrated plant genome annotation. PMID:24253915

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  Leaf oil body functions as a subcellular factory for the production of a phytoalexin in Arabidopsis. PMID:24214535

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  Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis. PMID:24147765

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  Identification of proteins enriched in rice egg or sperm cells by single-cell proteomics. PMID:23936051

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  Genome-wide expression analysis of rice aquaporin genes and development of a functional gene network mediated by aquaporin expression in roots. PMID:23801298

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  Discovery of diversity in xylan biosynthetic genes by transcriptional profiling of a heteroxylan containing mucilaginous tissue. PMID:23761806

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  Functional diversification of FD transcription factors in rice, components of florigen activation complexes. PMID:23324168

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  RiceFREND: a platform for retrieving coexpressed gene networks in rice. PMID:23180784

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  RiceXPro version 3.0: expanding the informatics resource for rice transcriptome. PMID:23180765

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  Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726

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  Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field. PMID:21571948

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  Positional cloning of ds1, the target leaf spot resistance gene against Bipolaris sorghicola in sorghum. PMID:21442410

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  Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics. PMID:21216747

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  Distinct gene expression profiles in egg and synergid cells of rice as revealed by cell type-specific microarrays. PMID:21106719

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  RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions. PMID:21045061

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  Duplicate polyphenol oxidase genes on barley chromosome 2H and their functional differentiation in the phenol reaction of spikes and grains. PMID:20616156

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.443859

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plant biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.443859

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.443859

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proteomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:48.443859

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model organisms plant biology proteins proteomics