e-Mouse Atlas of Gene Expression
Names
More detailed information about this field from each metasource.
e-Mouse Atlas of Gene Expression
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
EMAGE
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
Emage
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
emage
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
Names
More detailed information about this field from each metasource.
e-Mouse Atlas of Gene Expression
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
EMAGE
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
Emage
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
emage
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:38.152728
Other names: EMAGE, Emage, emage
Names
More detailed information about this field from each metasource.
e-Mouse Atlas of Gene Expression
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
EMAGE
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
Emage
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
emage
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:38.152728
The e-Mouse Atlas of Gene Expression (EMAGE) is a freely available database of in situ gene expression patterns that allows users to perform online queries of mouse developmental gene expression. EMAGE is unique in providing both text-based descriptions of gene expression plus spatial maps of gene expression patterns. This mapping allows spatial queries to be accomplished alongside more traditional text-based queries.
Description
More detailed information about this field from each metasource.
The e-Mouse Atlas of Gene Expression (EMAGE) is a freely available database of in situ gene expression patterns that allows users to perform online queries of mouse developmental gene expression. EMAGE is unique in providing both text-based descriptions of gene expression plus spatial maps of gene expression patterns. This mapping allows spatial queries to be accomplished alongside more traditional text-based queries.
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
EMAGE is a free community resource housing in situ gene expression patterns in the developing mouse embryo. The data have been generated using methods such as in situ hybridisation, immunohistochemistry and in situ genetic reporter techniques (e.g. gene-trap, knock-in reporter). Gene expression domains from raw images are converted into digital domains and these are integrated spatially into a set of standard 3D virtual mouse embryos at different stages of development. This allows data interrogation by spatial methods. An anatomy ontology is also used to describe sites of expression which allows data to be queried using text-based methods.Graphical User Interface: A HTML search interface is provided at http://www.emouseatlas.org/emage.Several search approaches are supported: using Embryo Space (the user can paint an arbitrary region on a virtual embryo to retrieve gene expression patterns that include a domain similar to the query domain); using a Gene/Protein Symbol/Name/ID, or using the Name of an Anatomical Structure. Additionally, an interface is available to analyse/mine the data in EMAGE to find gene expression patterns with globally similar expression patterns (this analysis is based on hierarchical clustering of spatial similarity values of all expression patterns in a set).Direct Access Methods: Several direct computational access methods are provided to EMAGE data and functions. These include a standard-format URL, WebServices, SQL query, Java API and DAS. See http://www.emouseatlas.org/emage/search/all_direct_access.html.Submitting Data: Data submissions are very welcome from the community. Either use the EMAGE Java Client (http://www.emouseatlas.org/emage/data_submission/via_submission_tool.html) to prepare a local database, of which any number of local entries can be uploaded to EMAGE for curation, or contact EMAGE curatorial staff directly using [email protected]. />EMAGE User Group and User Support Users can register to join the EMAGE User Group: http://www.emouseatlas.org/emage/help/user_group.html. Regular updates and news about the project are sent to subscribers. Help is also available regarding any aspect of the database by emailing the EMAGE Editorial Office on [email protected].
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
EMAGE (e-Mouse Atlas of Gene Expression) is an online biological database of gene expression data in the developing mouse (Mus musculus) embryo. The data held in EMAGE is spatially annotated to a framework of 3D mouse embryo models produced by EMAP (e-Mouse Atlas Project). These spatial annotations allow users to query EMAGE by spatial pattern as well as by gene name, anatomy term or Gene Ontology (GO) term. EMAGE is a freely available web-based resource funded by the Medical Research Council (UK) and based at the MRC Human Genetics Unit in the Institute of Genetics and Molecular Medicine, Edinburgh, UK.
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
Freely available online database of in situ gene expression patterns in the developing mouse embryo. Gene expression domains from raw images are extracted and integrated spatially into a set of standard 3D virtual mouse embryos at different stages, allowing data interrogation by spatial methods. An anatomy ontology is also used to describe sites of expression, data can be queried using text-based methods. Data coverage has been increased by sourcing from a greater selection of journals.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:38.152728
Webpage:
https://www.emouseatlas.org/emage/home.phpWebpage
More detailed information about this field from each metasource.
https://www.emouseatlas.org/emage/home.php
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.emouseatlas.org/emage/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
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Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Copyrights
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
Licence URL
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https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.emouseatlas.org/emage/info/copyright.html
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
Publications:
(6)
Publications
More detailed information about this field from each metasource.
EMAGE mouse embryo spatial gene expression database: 2014 update
PMID: 24265223
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
EMAGE mouse embryo spatial gene expression database: 2010 update
PMID: 19767607
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
EMAGE: a spatial database of gene expression patterns during mouse embryo development
PMID: 16381949
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
EMAGE--Edinburgh Mouse Atlas of Gene Expression: 2008 update
PMID: 18077470
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
The BioMart interface to the eMouseAtlas gene expression database EMAGE
PMID: 21930504
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
http://dx.doi.org/10.1093/nar/gkt1155
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
EMAGE mouse embryo spatial gene expression database: 2014 update
PMID: 24265223
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
EMAGE mouse embryo spatial gene expression database: 2010 update
PMID: 19767607
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
EMAGE: a spatial database of gene expression patterns during mouse embryo development
PMID: 16381949
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
EMAGE--Edinburgh Mouse Atlas of Gene Expression: 2008 update
PMID: 18077470
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
The BioMart interface to the eMouseAtlas gene expression database EMAGE
PMID: 21930504
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
http://dx.doi.org/10.1093/nar/gkt1155
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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EMAGE mouse embryo spatial gene expression database: 2014 update
PubMed citations: 65.
65 articles citing: EMAGE mouse embryo spatial gene expression database: 2014 update
Hinge point emergence in mammalian spinal neurulation. PMID:35561223
Epilepsy in Pregnancy-Management Principles and Focus on Valproate. PMID:35163292
Derivedness Index for Estimating Degree of Phenotypic Evolution of Embryos: A Study of Comparative Transcriptomic Analyses of Chordates and Echinoderms. PMID:34900995
Liver and brain differential expression of one-carbon metabolism genes during ontogenesis. PMID:34702858
Genetic predisposition to tinnitus in the UK Biobank population. PMID:34518561
Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis. PMID:34489600
Loss of CC2D1A in Glutamatergic Neurons Results in Autistic-Like Features in Mice. PMID:34132974
A single-embryo, single-cell time-resolved model for mouse gastrulation. PMID:33932341
Cadherins in early neural development. PMID:33796894
Dysregulated BMP signaling through ACVR1 impairs digit joint development in fibrodysplasia ossificans progressiva (FOP). PMID:33217406
Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states. PMID:33116143
Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach. PMID:32857879
Phf21b imprints the spatiotemporal epigenetic switch essential for neural stem cell differentiation. PMID:32820037
GCN5 acetylation is required for craniofacial chondrocyte maturation. PMID:32446700
Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids. PMID:32076263
Rabs in Signaling and Embryonic Development. PMID:32033485
The Developmental Gene Hypothesis for Punctuated Equilibrium: Combined Roles of Developmental Regulatory Genes and Transposable Elements. PMID:31943266
Single cell RNA-sequencing reveals cellular heterogeneity and trajectories of lineage specification during murine embryonic limb development. PMID:31874220
Toward a Common Coordinate Framework for the Human Body. PMID:31835027
Application of Computational Biology to Decode Brain Transcriptomes. PMID:31655213
N-cadherin stabilises neural identity by dampening anti-neural signals. PMID:31601548
Skeletal muscle mitochondrial function and exercise capacity are not impaired in mice with knockout of STAT3. PMID:31513449
Molecular architecture of lineage allocation and tissue organization in early mouse embryo. PMID:31391582
Emergence of structure in mouse embryos: Structural Entropy morphometry applied to digital models of embryonic anatomy. PMID:31276197
EmExplorer: a database for exploring time activation of gene expression in mammalian embryos. PMID:31164042
The modular organization of the cerebral cortex: Evolutionary significance and possible links to neurodevelopmental conditions. PMID:30303529
Oncogene Delta/Notch-Like EGF-Related Receptor Promotes Cell Proliferation, Invasion, and Migration in Hepatocellular Carcinoma and Predicts a Poor Prognosis. PMID:30235011
Wnt evolution and function shuffling in liberal and conservative chordate genomes. PMID:30045756
Ancient Origin of the CARD-Coiled Coil/Bcl10/MALT1-Like Paracaspase Signaling Complex Indicates Unknown Critical Functions. PMID:29881386
A quantitative method for staging mouse embryos based on limb morphometry. PMID:29540505
eHistology image and annotation data from the Kaufman Atlas of Mouse Development. PMID:29272399
DNER modulates the length, polarity and synaptogenesis of spiral ganglion neurons via the Notch signaling pathway. PMID:29207144
A molecular roadmap of the AGM region reveals BMPER as a novel regulator of HSC maturation. PMID:29093060
Sexually Dimorphic Epigenetic Regulation of Brain-Derived Neurotrophic Factor in Fetal Brain in the Valproic Acid Model of Autism Spectrum Disorder. PMID:29073621
History dependence and the continuum approximation breakdown: the impact of domain growth on Turing's instability. PMID:28413340
Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells. PMID:28332981
Ultrasound-guided spectral photoacoustic imaging of hemoglobin oxygenation during development. PMID:28270982
Stomach curvature is generated by left-right asymmetric gut morphogenesis. PMID:28242610
eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis. PMID:28161522
Scaling single-cell genomics from phenomenology to mechanism. PMID:28102262
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Brain transcriptome atlases: a computational perspective. PMID:27909802
RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation. PMID:27852218
Sex and Tissue Specificity of Peg3 Promoters. PMID:27711129
Parallel evolution of male germline epigenetic poising and somatic development in animals. PMID:27294618
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Comparison between Timelines of Transcriptional Regulation in Mammals, Birds, and Teleost Fish Somitogenesis. PMID:27192554
A gonogenic stimulated transition of mouse embryonic stem cells with enhanced control of diverse differentiation pathways. PMID:27157261
Pdgfrb-Cre targets lymphatic endothelial cells of both venous and non-venous origins. PMID:27060598
Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus. PMID:27019019
Meta-analysis Reveals Genome-Wide Significance at 15q13 for Nonsyndromic Clefting of Both the Lip and the Palate, and Functional Analyses Implicate GREM1 As a Plausible Causative Gene. PMID:26968009
A disintegrin and metalloprotease 10 (ADAM10) is a central regulator of murine liver tissue homeostasis. PMID:26942887
Web-based volume slicer for 3D electron-microscopy data from EMDB. PMID:26876163
Cc2d1a Loss of Function Disrupts Functional and Morphological Development in Forebrain Neurons Leading to Cognitive and Social Deficits. PMID:26826102
MTD: a mammalian transcriptomic database to explore gene expression and regulation. PMID:26822098
p300 is not required for metabolic adaptation to endurance exercise training. PMID:26712218
Developing the eHistology Atlas. PMID:26500249
Neuropilin-2/Semaphorin-3F-mediated repulsion promotes inner hair cell innervation by spiral ganglion neurons. PMID:26302206
eMouseAtlas informatics: embryo atlas and gene expression database. PMID:26296321
Control of signaling-mediated clearance of apoptotic cells by the tumor suppressor p53. PMID:26228159
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Deducing the stage of origin of Wilms' tumours from a developmental series of Wt1-mutant mice. PMID:26035382
GXD: a community resource of mouse Gene Expression Data. PMID:25939429
Transcriptional profiling of ectoderm specification to keratinocyte fate in human embryonic stem cells. PMID:25849374
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384 -
EMAGE mouse embryo spatial gene expression database: 2010 update
PubMed citations: 50.
50 articles citing: EMAGE mouse embryo spatial gene expression database: 2010 update
Past, Current, and Future Strategies to Target ERG Fusion-Positive Prostate Cancer. PMID:35267426
Murine SEC24D can substitute functionally for SEC24C during embryonic development. PMID:34702932
A multiscale model via single-cell transcriptomics reveals robust patterning mechanisms during early mammalian embryo development. PMID:33684098
Asymmetric Conservation within Pairs of Co-Occurred Motifs Mediates Weak Direct Binding of Transcription Factors in ChIP-Seq Data. PMID:32825662
Emergence of structure in mouse embryos: Structural Entropy morphometry applied to digital models of embryonic anatomy. PMID:31276197
Human mutations in integrator complex subunits link transcriptome integrity to brain development. PMID:28542170
eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis. PMID:28161522
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks. PMID:27071099
A multi-ethnic genome-wide association study identifies novel loci for non-syndromic cleft lip with or without cleft palate on 2p24.2, 17q23 and 19q13. PMID:27033726
eMouseAtlas informatics: embryo atlas and gene expression database. PMID:26296321
Mammalian COPII coat component SEC24C is required for embryonic development in mice. PMID:24876386
Charting Brachyury-mediated developmental pathways during early mouse embryogenesis. PMID:24616493
Transcriptional enhancers: from properties to genome-wide predictions. PMID:24614317
A splice donor mutation in NAA10 results in the dysregulation of the retinoic acid signalling pathway and causes Lenz microphthalmia syndrome. PMID:24431331
EMAGE mouse embryo spatial gene expression database: 2014 update. PMID:24265223
Genetics of cleft lip and cleft palate. PMID:24124047
The mouse pathology ontology, MPATH; structure and applications. PMID:24033988
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. PMID:23972281
A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks. PMID:23917988
LifeMap Discovery™: the embryonic development, stem cells, and regenerative medicine research portal. PMID:23874394
Disruption of the Sec24d gene results in early embryonic lethality in the mouse. PMID:23596517
TRACER: a resource to study the regulatory architecture of the mouse genome. PMID:23547943
The ZIC gene family encodes multi-functional proteins essential for patterning and morphogenesis. PMID:23443491
Reuse of public genome-wide gene expression data. PMID:23269463
Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression. PMID:23253453
A systems approach and skeletal myogenesis. PMID:22991503
Rare copy number variants contribute to congenital left-sided heart disease. PMID:22969434
Web-based digital gene expression atlases for the mouse. PMID:22936000
BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration. PMID:22847375
eMouseAtlas, EMAGE, and the spatial dimension of the transcriptome. PMID:22847374
fras1 shapes endodermal pouch 1 and stabilizes zebrafish pharyngeal skeletal development. PMID:22782724
β-Defensins: multifunctional modulators of infection, inflammation and more? PMID:22441423
Systematic approaches to central nervous system myelin. PMID:22441408
Biocurators and biocuration: surveying the 21st century challenges. PMID:22434828
Innovation in biological microscopy: current status and future directions. PMID:22408015
Opposing functions of the ETS factor family define Shh spatial expression in limb buds and underlie polydactyly. PMID:22340503
Hox in space: gene cluster regulation linked to folding of chromatin. PMID:22198682
MCS9.7 enhancer activity is highly, but not completely, associated with expression of Irf6 and p63. PMID:22113860
A focused in situ hybridization screen identifies candidate transcriptional regulators of thymic epithelial cell development and function. PMID:22087235
The BioMart interface to the eMouseAtlas gene expression database EMAGE. PMID:21930504
A comparative gene expression database for invertebrates. PMID:21861937
Vascular endothelial growth factor (VEGF) isoform regulation of early forebrain development. PMID:21803034
The GUDMAP database--an online resource for genitourinary research. PMID:21652655
The FaceBase Consortium: a comprehensive program to facilitate craniofacial research. PMID:21458441
The mouse Gene Expression Database (GXD): 2011 update. PMID:21062809
Understanding kidney disease: toward the integration of regulatory networks across species. PMID:21044762
Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo. PMID:20517297
Visualization of image data from cells to organisms. PMID:20195255
Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape. PMID:20087342 -
EMAGE: a spatial database of gene expression patterns during mouse embryo development
PubMed citations: 45.
45 articles citing: EMAGE: a spatial database of gene expression patterns during mouse embryo development
Formalizing Phenotypes of Regeneration. PMID:35359335
Emergence of structure in mouse embryos: Structural Entropy morphometry applied to digital models of embryonic anatomy. PMID:31276197
Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case. PMID:28196369
eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis. PMID:28161522
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
PARP6 is a Regulator of Hippocampal Dendritic Morphogenesis. PMID:26725726
eMouseAtlas informatics: embryo atlas and gene expression database. PMID:26296321
Unraveling the association between mRNA expressions and mutant phenotypes in a genome-wide assessment of mice. PMID:25825715
Integrated annotation and analysis of in situ hybridization images using the ImAnno system: application to the ear and sensory organs of the fetal mouse. PMID:25706271
Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases. PMID:25309417
Mouse IDGenes: a reference database for genetic interactions in the developing mouse brain. PMID:25145340
Using image mapping towards biomedical and biological data sharing. PMID:24059352
Interactions between the neuromodulatory systems and the amygdala: exploratory survey using the Allen Mouse Brain Atlas. PMID:23143393
A systems approach and skeletal myogenesis. PMID:22991503
eMouseAtlas, EMAGE, and the spatial dimension of the transcriptome. PMID:22847374
The BioMart interface to the eMouseAtlas gene expression database EMAGE. PMID:21930504
A comparative gene expression database for invertebrates. PMID:21861937
Genetics of nonsyndromic orofacial clefts. PMID:21545302
Automatically identifying and annotating mouse embryo gene expression patterns. PMID:21357576
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PMID:21267068
The interactive presentation of 3D information obtained from reconstructed datasets and 3D placement of single histological sections with the 3D portable document format. PMID:21138978
Understanding kidney disease: toward the integration of regulatory networks across species. PMID:21044762
Metadata matters: access to image data in the real world. PMID:20513764
Visualization of image data from cells to organisms. PMID:20195255
2D-PCR: a method of mapping DNA in tissue sections. PMID:20024032
Systems biology of embryogenesis. PMID:20003850
More than a decade of developmental gene expression atlases: where are we now? PMID:19822576
EMAGE mouse embryo spatial gene expression database: 2010 update. PMID:19767607
A genome-wide screen for spatially restricted expression patterns identifies transcription factors that regulate glial development. PMID:19741146
Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain. PMID:19698790
Subdivision meshes for organizing spatial biomedical data. PMID:19664714
Bioimage informatics for experimental biology. PMID:19416072
Digital atlases as a framework for data sharing. PMID:18982112
Cadmium-induced differential toxicogenomic response in resistant and sensitive mouse strains undergoing neurulation. PMID:18974090
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. PMID:18953041
Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain. PMID:18366675
3D representation of Wnt and Frizzled gene expression patterns in the mouse embryo at embryonic day 11.5 (Ts19). PMID:18364260
Rac1 is essential for intraembryonic hematopoiesis and for the initial seeding of fetal liver with definitive hematopoietic progenitor cells. PMID:18083846
EMAGE--Edinburgh Mouse Atlas of Gene Expression: 2008 update. PMID:18077470
MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data. PMID:17937818
4DXpress: a database for cross-species expression pattern comparisons. PMID:17916571
Three-dimensional imaging of Drosophila melanogaster. PMID:17786206
Prediction of gene expression in embryonic structures of Drosophila melanogaster. PMID:17658945
The mouse Gene Expression Database (GXD): 2007 update. PMID:17130151
Developmental mouse brain gene expression maps. PMID:16728446 -
EMAGE--Edinburgh Mouse Atlas of Gene Expression: 2008 update
PubMed citations: 21.
21 articles citing: EMAGE--Edinburgh Mouse Atlas of Gene Expression: 2008 update
A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis. PMID:24945246
The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. PMID:24146773
A gene expression atlas of the domestic pig. PMID:23153189
A systems approach and skeletal myogenesis. PMID:22991503
eMouseAtlas, EMAGE, and the spatial dimension of the transcriptome. PMID:22847374
Web tools for large-scale 3D biological images and atlases. PMID:22676296
The BioMart interface to the eMouseAtlas gene expression database EMAGE. PMID:21930504
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions. PMID:21878109
A comparative gene expression database for invertebrates. PMID:21861937
Quantitative expression profile of distinct functional regions in the adult mouse brain. PMID:21858037
Understanding kidney disease: toward the integration of regulatory networks across species. PMID:21044762
The HUDSEN Atlas: a three-dimensional (3D) spatial framework for studying gene expression in the developing human brain. PMID:20979583
Expression of the transcription factor, TFII-I, during post-implantation mouse embryonic development. PMID:20642858
Three-dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain. PMID:20577980
Natural selection drives the accumulation of amino acid tandem repeats in human proteins. PMID:20335526
More than a decade of developmental gene expression atlases: where are we now? PMID:19822576
Knowledge-driven enhancements for task composition in bioinformatics. PMID:19796396
EMAGE mouse embryo spatial gene expression database: 2010 update. PMID:19767607
aGEM: an integrative system for analyzing spatial-temporal gene-expression information. PMID:19592395
G2Cdb: the Genes to Cognition database. PMID:18984621
The Neuroterrain 3D Mouse Brain Atlas. PMID:18974795 -
The BioMart interface to the eMouseAtlas gene expression database EMAGE
PubMed citations: 9.
9 articles citing: The BioMart interface to the eMouseAtlas gene expression database EMAGE
The BioMart community portal: an innovative alternative to large, centralized data repositories. PMID:25897122
Unraveling the association between mRNA expressions and mutant phenotypes in a genome-wide assessment of mice. PMID:25825715
EMAGE mouse embryo spatial gene expression database: 2014 update. PMID:24265223
Bioinformatic analysis of the four transcription factors used to induce pluripotent stem cells. PMID:24129607
BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration. PMID:22847375
eMouseAtlas, EMAGE, and the spatial dimension of the transcriptome. PMID:22847374
BioMart: driving a paradigm change in biological data management. PMID:22083790
BioMart Central Portal: an open database network for the biological community. PMID:21930507
BioMart: a data federation framework for large collaborative projects. PMID:21930506
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Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
immunohistochemistry
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
in situ hybridization
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
life cycle stage
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
model organism
metasource: Fairsharing.org
version: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
microarray data and other gene expression databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
dna
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
bioinformatics
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
genes
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
molecular biology
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
mouse embryo
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
proteins
metasource: re3data.org
version: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
tomography
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
anatomy
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
imaging
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:38.152728
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
immunohistochemistry
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
in situ hybridization
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
life cycle stage
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
model organism
metasource: Fairsharing.orgversion: FAIRsharing.org: EMAGE; e-Mouse Atlas of Gene Expression; DOI: https://doi.org/10.25504/FAIRsharing.6qr9jp; Last edited: March 17, 2021, 2:12 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
microarray data and other gene expression databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
dna
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
bioinformatics
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
genes
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
molecular biology
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
mouse embryo
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
proteins
metasource: re3data.orgversion: re3data.org: Emage; editing status 2021-09-03; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3860B last accessed: 2022-11-04
tomography
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:38.152728
anatomy
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:38.152728
imaging
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:38.152728
gene expression gene expression immunohistochemistry in situ hybridization life cycle stage model organism microarray data and other gene expression dna bioinformatics gene genetics molecular biology mouse embryo proteins tomography anatomy imaging
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