R3JG6V last accessed: 2022-11-04

pride
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.789129

Other names: PRIDE, PRoteomics IDEntifications Database, pride

The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.

Webpage:

http://www.ebi.ac.uk/pride/

Licence:

Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
URL: http://opendatacommons.org/licenses/pddl/1.0/

Publications: (10)

Publications
More detailed information about this field from each metasource.

The PRIDE database and related tools and resources in 2019: improving support for quantification data
PMID: 30395289
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

2016 update of the PRIDE database and its related tools
PMID: 26527722
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

ProteomeXchange provides globally coordinated proteomics data submission and dissemination
PMID: 24727771
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
PMID: 23203882
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

PRIDE: the proteomics identifications database
PMID: 16041671
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

PRIDE: a public repository of protein and peptide identifications for the proteomics community
PMID: 16381953
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

PRIDE: new developments and new datasets
PMID: 18033805
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

How to submit MS proteomics data to ProteomeXchange via the PRIDE database
PMID: 25047258
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

Using the Proteomics Identifications Database (PRIDE)
PMID: 18428683
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE; PRoteomics IDEntifications database; DOI: https://doi.org/10.25504/FAIRsharing.e1byny; Last edited: March 22, 2021, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:04.789129

http://dx.doi.org/10.1093/nar/gks1262
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

The PRIDE database and related tools and resources in 2019: improving support for quantification data PubMed citations: 2989.

2989 articles citing: The PRIDE database and related tools and resources in 2019: improving support for quantification data

Synaptotagmin-13 orchestrates pancreatic endocrine cell egression and islet morphogenesis. PMID:35927244
The E3 ubiquitin ligase HECTD1 contributes to cell proliferation through an effect on mitosis. PMID:35915203
Neprilysins regulate muscle contraction and heart function via cleavage of SERCA-inhibitory micropeptides. PMID:35906206
Lipid-related FABP5 activation of tumor-associated monocytes fosters immune privilege via PD-L1 expression on Treg cells in hepatocellular carcinoma. PMID:35902729
Quantitative Detection of Protein Splice Variants by Selected Reaction Monitoring (SRM) Mass Spectrometry. PMID:35895268
A Protocol for the Acquisition of Comprehensive Proteomics Data from Single Cases Using Formalin-Fixed Paraffin Embedded Sections. PMID:35893583
The G3BP1-UPF1-Associated Long Non-Coding RNA CALA Regulates RNA Turnover in the Cytoplasm. PMID:35893232
Proteotranscriptomics - A facilitator in omics research. PMID:35891789
A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics. PMID:35888710
Proteomic Investigation of the Role of Nucleostemin in Nucleophosmin-Mutated OCI-AML 3 Cell Line. PMID:35886999
TTC30A and TTC30B Redundancy Protects IFT Complex B Integrity and Its Pivotal Role in Ciliogenesis. PMID:35885974
Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration. PMID:35882847
Multiple Myeloma-Derived Extracellular Vesicles Modulate the Bone Marrow Immune Microenvironment. PMID:35874665
Strongly Truncated Dnaaf4 Plays a Conserved Role in Drosophila Ciliary Dynein Assembly as Part of an R2TP-Like Co-Chaperone Complex With Dnaaf6. PMID:35873488
Identifying and characterising Thrap3, Bclaf1 and Erh interactions using cross-linking mass spectrometry. PMID:35865489
A modification-centric assessment tool for the performance of chemoproteomic probes. PMID:35864333
Structure of the metastatic factor P-Rex1 reveals a two-layered autoinhibitory mechanism. PMID:35864164
Oocytes maintain ROS-free mitochondrial metabolism by suppressing complex I. PMID:35859172
Activation of CD44/PAK1/AKT signaling promotes resistance to FGFR1 inhibition in squamous-cell lung cancer. PMID:35853934
Combinatorial targeting of a chromatin complex comprising Dot1L, menin and the tyrosine kinase BAZ1B reveals a new therapeutic vulnerability of endocrine therapy-resistant breast cancer. PMID:35850772
Solvent Precipitation SP3 (SP4) Enhances Recovery for Proteomics Sample Preparation without Magnetic Beads. PMID:35848328
CK2β Is a Gatekeeper of Focal Adhesions Regulating Cell Spreading. PMID:35847979
Predicting the Success of Fmoc-Based Peptide Synthesis. PMID:35847273
Dataset containing physiological amounts of spike-in proteins into murine C2C12 background as a ground truth quantitative LC-MS/MS reference. PMID:35845101
Proteomic analysis of low- and high-grade human colon adenocarcinoma tissues and tissue-derived primary cell lines reveals unique biological functions of tumours and new protein biomarker candidates. PMID:35842572
The CIP2A-TOPBP1 complex safeguards chromosomal stability during mitosis. PMID:35842428
The surfaceome of multiple myeloma cells suggests potential immunotherapeutic strategies and protein markers of drug resistance. PMID:35840578
NExtSEEK: Extending SEEK for Active Management of Interoperable Metadata. PMID:35836998
Multi-omics study identifies novel signatures of DNA/RNA, amino acid, peptide, and lipid metabolism by simulated diabetes on coronary endothelial cells. PMID:35835939
A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment. PMID:35835784
Accelerated lysine metabolism conveys kidney protection in salt-sensitive hypertension. PMID:35835746
Identification of Proteases and Protease Inhibitors in Seeds of the Recalcitrant Forest Tree Species Quercus ilex. PMID:35832232
Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery. PMID:35831314
A specialized Hsp90 co-chaperone network regulates steroid hormone receptor response to ligand. PMID:35830801
Proteomic characterisation of triple negative breast cancer cells following CDK4/6 inhibition. PMID:35817775
Using Targeted Liquid Chromatography-Tandem Mass Spectrometry to Rapidly Detect β-Lactam, Aminoglycoside, and Fluoroquinolone Resistance Mechanisms in Blood Cultures Growing E. coli or K. pneumoniae. PMID:35814653
Proteomic Signatures of Monocytes in Hereditary Recurrent Fevers. PMID:35812440
Analysis and Evaluation of the Flagellin Activity of Bacillus amyloliquefaciens Ba168 Antimicrobial Proteins against Penicillium expansum. PMID:35807503
Cytoplasmic LMO2-LDB1 Complex Activates STAT3 Signaling through Interaction with gp130-JAK in Glioma Stem Cells. PMID:35805116
Mutant KRAS-Associated Proteome Is Mainly Controlled by Exogenous Factors. PMID:35805073
The Potential Tumor-Suppressor DHRS7 Inversely Correlates with EGFR Expression in Prostate Cancer Cells and Tumor Samples. PMID:35804847
Mimicked synthetic ribosomal protein complex for benchmarking crosslinking mass spectrometry workflows. PMID:35803948
dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts. PMID:35803928
Protein palmitoylation-mediated palmitic acid sensing causes blood-testis barrier damage via inducing ER stress. PMID:35803125
Patient-Derived Extracellular Vesicles Proteins as New Biomarkers in Multiple Myeloma - A Real-World Study. PMID:35800053
Distinct cell type-specific protein signatures in GRN and MAPT genetic subtypes of frontotemporal dementia. PMID:35799292
Simplifying MS1 and MS2 spectra to achieve lower mass error, more dynamic range, and higher peptide identification confidence on the Bruker timsTOF Pro. PMID:35797390
People with HIV have higher percentages of circulating CCR5+ CD8+ T cells and lower percentages of CCR5+ regulatory T cells. PMID:35794176
Genomic erosion and horizontal gene transfer shape functional differences of the ExlA toxin in Pseudomonas spp. PMID:35789842
Increased CSF-decorin predicts brain pathological changes driven by Alzheimer's Aβ amyloidosis. PMID:35787306
Differential Trafficking and Expression of PIR Proteins in Acute and Chronic Plasmodium Infections. PMID:35782145
Aedes aegypti Aag-2 Cell Proteome Modulation in Response to Chikungunya Virus Infection. PMID:35782121
The splicing factor RBM17 drives leukemic stem cell maintenance by evading nonsense-mediated decay of pro-leukemic factors. PMID:35781533
Proteomic Analysis of Chicken Chorioallantoic Membrane (CAM) during Embryonic Development Provides Functional Insight. PMID:35774275
A degradative to secretory autophagy switch mediates mitochondria clearance in the absence of the mATG8-conjugation machinery. PMID:35764633
Hsp multichaperone complex buffers pathologically modified Tau. PMID:35760815
Multi-omics reveals mechanisms of resistance to potato root infection by Spongospora subterranea. PMID:35752627
Cell surface glycan engineering reveals that matriglycan alone can recapitulate dystroglycan binding and function. PMID:35750689
Deciphering signal transduction networks in the liver by mechanistic mathematical modelling. PMID:35748700
Adaptation of Oxidative Phosphorylation Machinery Compensates for Hepatic Lipotoxicity in Early Stages of MAFLD. PMID:35743314
Quantitative Succinyl-Proteome Profiling of Turnip (Brassica rapa var. rapa) in Response to Cadmium Stress. PMID:35741076
CFTR Rescue by Lumacaftor (VX-809) Induces an Extensive Reorganization of Mitochondria in the Cystic Fibrosis Bronchial Epithelium. PMID:35741067
Proteomic Profiling Identifies Co-Regulated Expression of Splicing Factors as a Characteristic Feature of Intravenous Leiomyomatosis. PMID:35740573
Polyphenols and IUGR Pregnancies: Effects of the Antioxidant Hydroxytyrosol on the Hippocampus Proteome in a Porcine Model. PMID:35740029
Functional changes of the gastric bypass microbiota reactivate thermogenic adipose tissue and systemic glucose control via intestinal FXR-TGR5 crosstalk in diet-induced obesity. PMID:35739571
Palaeoproteomics guidelines to identify proteinaceous binders in artworks following the study of a 15th-century painting by Sandro Botticelli's workshop. PMID:35739140
A novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex. PMID:35736244
AtNusG, a chloroplast nucleoid protein of bacterial origin linking chloroplast transcriptional and translational machineries, is required for proper chloroplast gene expression in Arabidopsis thaliana. PMID:35736138
Potential biomarkers of spinal dural arteriovenous fistula: C4BPA and C1QA. PMID:35733178
SILAC kinase screen identifies potential MASTL substrates. PMID:35732702
RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression. PMID:35732654
Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis. PMID:35729566
Transcriptomic and proteomic profiling of peptidase expression in Fasciola hepatica eggs developing at host's body temperature. PMID:35725898
Revealing the human mucinome. PMID:35725833
Doxycycline Alters the Porcine Renal Proteome and Degradome during Hypothermic Machine Perfusion. PMID:35723325
Time-resolved phosphoproteome and proteome analysis reveals kinase signaling on master transcription factors during myogenesis. PMID:35721465
Identification of the Bartonella autotransporter CFA as a protective antigen and hypervariable target of neutralizing antibodies in mice. PMID:35714289
Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PMID:35714157
Recognition of Cell Wall Mannosylated Components as a Conserved Feature for Fungal Entrance, Adaptation and Survival Within Trophozoites of Acanthamoeba castellanii and Murine Macrophages. PMID:35711659
p166 links membrane and intramitochondrial modules of the trypanosomal tripartite attachment complex. PMID:35709300
Dynamics of allosteric regulation of the phospholipase C-γ isozymes upon recruitment to membranes. PMID:35708309
Time-resolved proximity labeling of protein networks associated with ligand-activated EGFR. PMID:35705039
Network approaches for modeling the effect of drugs and diseases. PMID:35704883
Factor quinolinone inhibitors disrupt spindles and multiple LSF (TFCP2)-protein interactions in mitosis, including with microtubule-associated proteins. PMID:35704642
Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction. PMID:35697783
Maximizing Depth of PTM Coverage: Generating Robust MS Datasets for Computational Prediction Modeling. PMID:35696073
ITRAQ-based quantitative proteomic analysis reveals that VPS35 promotes the expression of MCM2-7 genes in HeLa cells. PMID:35690672
Tissue catabolism and donor-specific dexamethasone response in a human osteochondral model of post-traumatic osteoarthritis. PMID:35689293
Excessive local host-graft connectivity in aging and amyloid-loaded brain. PMID:35687689
Brain injury environment critically influences the connectivity of transplanted neurons. PMID:35687687
An atlas of Arabidopsis protein S-acylation reveals its widespread role in plant cell organization and function. PMID:35681017
Extracellular release of two peptidases dominates generation of the trypanosome quorum-sensing signal. PMID:35680928
Proteomic Analysis Reveals Proteins Involved in the Mode of Action of β-Citronellol Identified From Citrus hystrix DC. Leaf Against Candida albicans. PMID:35677908
Dataset for suppressors of amyloid-β toxicity and their functions in recombinant protein production in yeast. PMID:35677454
The renal lineage factor PAX8 controls oncogenic signalling in kidney cancer. PMID:35676472
Comparative interactome analysis of the PRE DNA-binding factors: purification of the Combgap-, Zeste-, Psq-, and Adf1-associated proteins. PMID:35676368
Quantitative proteomics and in-cell cross-linking reveal cellular reorganisation during early neuronal differentiation of SH-SY5Y cells. PMID:35672350
Signatures of glial activity can be detected in the CSF proteome. PMID:35666874
Innovative in Silico Approaches for Characterization of Genes and Proteins. PMID:35664302
BacPROTACs mediate targeted protein degradation in bacteria. PMID:35662409
A synaptomic analysis reveals dopamine hub synapses in the mouse striatum. PMID:35660742
Discovery of Unknown Posttranslational Modifications by Top-Down Mass Spectrometry. PMID:35657594
Brain proteome profiling implicates the complement and coagulation cascade in multiple system atrophy brain pathology. PMID:35657417
5'isomiR-183-5p|+2 elicits tumor suppressor activity in a negative feedback loop with E2F1. PMID:35655310
Mistargeting of aggregation prone mitochondrial proteins activates a nucleus-mediated posttranscriptional quality control pathway in trypanosomes. PMID:35654893
Augmented Enterocyte Damage During Candida albicans and Proteus mirabilis Coinfection. PMID:35651758
A method for lipoprotein (a) Isolation from a small volume of plasma with applications for clinical research. PMID:35650291
Characterisation of a nucleo-adhesome. PMID:35650196
Impact of p53 knockdown on protein dataset of HaCaT cells. PMID:35647242
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. PMID:35640880
Exon junction complex-associated multi-adapter RNPS1 nucleates splicing regulatory complexes to maintain transcriptome surveillance. PMID:35640609
InvL, an Invasin-Like Adhesin, Is a Type II Secretion System Substrate Required for Acinetobacter baumannii Uropathogenesis. PMID:35638734
A learned embedding for efficient joint analysis of millions of mass spectra. PMID:35637305
Differential Expression of Proteins in an Atypical Presentation of Autoimmune Lymphoproliferative Syndrome. PMID:35628184
Multiphoton Microscopy Reveals DAPK1-Dependent Extracellular Matrix Remodeling in a Chorioallantoic Membrane (CAM) Model. PMID:35625969
Proteomic and transcriptomic profiles of human urothelial cancer cells with histone deacetylase 5 overexpression. PMID:35624179
Cytosolic aspartate aminotransferase moonlights as a ribosome-binding modulator of Gcn2 activity during oxidative stress. PMID:35621265
Protective Signature of IFNγ-Stimulated Microglia Relies on miR-124-3p Regulation From the Secretome Released by Mutant APP Swedish Neuronal Cells. PMID:35620289
Perception of a conserved family of plant signalling peptides by the receptor kinase HSL3. PMID:35617122
Proteomic profiling of concurrently isolated primary microvascular endothelial cells, pericytes, and vascular smooth muscle cells from adult mouse heart. PMID:35614104
Engineered SH2 Domains for Targeted Phosphoproteomics. PMID:35613471
The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins. PMID:35610211
Opening opportunities for Kd determination and screening of MHC peptide complexes. PMID:35606511
A Spin-Tip Enrichment Strategy for Simultaneous Analysis of N-Glycopeptides and Phosphopeptides from Human Pancreatic Tissues. PMID:35604151
T Cell Epitope Discovery in the Context of Distinct and Unique Indigenous HLA Profiles. PMID:35603215
Double-Stranded RNA Viruses Are Released From Trichomonas vaginalis Inside Small Extracellular Vesicles and Modulate the Exosomal Cargo. PMID:35602021
Multiaspect Examinations of Possible Alternative Mappings of Identified Variant Peptides: A Case Study on the HEK293 Cell Line. PMID:35601313
Candida albicans SR-Like Protein Kinases Regulate Different Cellular Processes: Sky1 Is Involved in Control of Ion Homeostasis, While Sky2 Is Important for Dipeptide Utilization. PMID:35601106
QKI-6 Suppresses Cell Proliferation, Migration, and EMT in Non-Small Cell Lung Cancer. PMID:35600368
Dynamic character displacement among a pair of bacterial phyllosphere commensals in situ. PMID:35595740
Improved Interpretation of Protein Conformational Differences and Ligand Occupancy in Large-Scale Cross-Link Data. PMID:35594376
Trafficking regulator of GLUT4-1 (TRARG1) is a GSK3 substrate. PMID:35594055
Identification of allergenomic signatures in allergic and well-tolerated apple genotypes using LC-MS/MS. PMID:35592704
13C15N: glucagon-based novel isotope dilution mass spectrometry method for measurement of glucagon metabolism in humans. PMID:35590248
Localization of EccA3 at the growing pole in Mycobacterium smegmatis. PMID:35590245
Deep Visual Proteomics defines single-cell identity and heterogeneity. PMID:35590073
A novel membrane complex is required for docking and regulated exocytosis of lysosome-related organelles in Tetrahymena thermophila. PMID:35587496
SARS-CoV-2 host-shutoff impacts innate NK cell functions, but antibody-dependent NK activity is strongly activated through non-spike antibodies. PMID:35587364
Genetic background and mistranslation frequency determine the impact of mistranslating tRNASerUGG. PMID:35587152
Distinct gene clusters drive formation of ferrosome organelles in bacteria. PMID:35585231
Deubiquitinating enzymes and the proteasome regulate preferential sets of ubiquitin substrates. PMID:35585066
HDLBP binds ER-targeted mRNAs by multivalent interactions to promote protein synthesis of transmembrane and secreted proteins. PMID:35585045
Nucleotide-amino acid π-stacking interactions initiate photo cross-linking in RNA-protein complexes. PMID:35581222
The potential of remdesivir to affect function, metabolism and proliferation of cardiac and kidney cells in vitro. PMID:35579693
Tracing the mobility of a Late Epigravettian (~ 13 ka) male infant from Grotte di Pradis (Northeastern Italian Prealps) at high-temporal resolution. PMID:35577834
Skin Cancer-Associated S. aureus Strains Can Induce DNA Damage in Human Keratinocytes by Downregulating DNA Repair and Promoting Oxidative Stress. PMID:35565272
Glycolysis Dependency as a Hallmark of SF3B1-Mutated Cells. PMID:35565242
Phosphoproteomics Unravel HBV Triggered Rewiring of Host Phosphosignaling Events. PMID:35563518
Novel Antibody-Peptide Binding Assay Indicates Presence of Immunoglobulins against EGFR Phospho-Site S1166 in High-Grade Glioma. PMID:35563452
Characterization of the Skeletal Muscle Proteome in Undernourished Old Rats. PMID:35563153
Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii. PMID:35562408
Elevation of fatty acid desaturase 2 in esophageal adenocarcinoma increases polyunsaturated lipids and may exacerbate bile acid-induced DNA damage. PMID:35560527
Peroxisome-Derived Hydrogen Peroxide Modulates the Sulfenylation Profiles of Key Redox Signaling Proteins in Flp-In T-REx 293 Cells. PMID:35557958
Mediator Complex of the Malaria Parasite Plasmodium falciparum Associates with Evolutionarily Novel Subunits. PMID:35557691
AIMP2-DX2 provides therapeutic interface to control KRAS-driven tumorigenesis. PMID:35546148
OXSR1 inhibits inflammasome activation by limiting potassium efflux during mycobacterial infection. PMID:35545295
Paracrine signalling between intestinal epithelial and tumour cells induces a regenerative programme. PMID:35543624
Conservation and divergence of myelin proteome and oligodendrocyte transcriptome profiles between humans and mice. PMID:35543322
Environmental cues from neural crest derivatives act as metastatic triggers in an embryonic neuroblastoma model. PMID:35538114
Factor inhibiting HIF can catalyze two asparaginyl hydroxylations in VNVN motifs of ankyrin fold proteins. PMID:35537551
Design of a Potent, Selective, and Brain-Penetrant Inhibitor of Wnt-Deactivating Enzyme Notum by Optimization of a Crystallographic Fragment Hit. PMID:35536179
SDR enzymes oxidize specific lipidic alkynylcarbinols into cytotoxic protein-reactive species. PMID:35535493
Comparative proteome analysis of the tegument of male and female adult Schistosoma mansoni. PMID:35534617
Von Willebrand factor A1 domain stability and affinity for GPIbα are differentially regulated by its O-glycosylated N- and C-linker. PMID:35532124
The splicing-regulatory lncRNA NTRAS sustains vascular integrity. PMID:35527520
Urinary extracellular vesicles contain mature transcriptome enriched in circular and long noncoding RNAs with functional significance in prostate cancer. PMID:35527349
Interval-Based Secretomics Unravels Acute-Phase Response in Hepatocyte Model Systems. PMID:35525403
Tetraspanins distinguish separate extracellular vesicle subpopulations in human serum and plasma - Contributions of platelet extracellular vesicles in plasma samples. PMID:35524458
Quantitative proteomic analysis of cerebrospinal fluid reveals CD163, A2M and full-length APP as potential diagnostic biomarkers of paediatric bacterial meningitis. PMID:35524265
Exploring synergies between plant metabolic modelling and machine learning. PMID:35521559
RNase E and HupB dynamics foster mycobacterial cell homeostasis and fitness. PMID:35521527
The Okur-Chung Neurodevelopmental Syndrome Mutation CK2K198R Leads to a Rewiring of Kinase Specificity. PMID:35517865
SPIN enables high throughput species identification of archaeological bone by proteomics. PMID:35513387
eEF2K Activity Determines Synergy to Cotreatment of Cancer Cells With PI3K and MEK Inhibitors. PMID:35513296
MITF deficiency accelerates GNAQ-driven uveal melanoma. PMID:35512098
Histone Variant macroH2A1.1 Enhances Nonhomologous End Joining-dependent DNA Double-strand-break Repair and Reprogramming Efficiency of Human iPSCs. PMID:35511867
Isobaric Tags for Relative and Absolute Quantitation Identification of Blood Proteins Relevant to Paroxetine Response in Patients With Major Depressive Disorder. PMID:35509884
CDC7-independent G1/S transition revealed by targeted protein degradation. PMID:35508654
Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF. PMID:35508485
Data Mining, Quality and Management in the Life Sciences. PMID:35507257
Host succinate inhibits influenza virus infection through succinylation and nuclear retention of the viral nucleoprotein. PMID:35506364
Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry. PMID:35505047
Off-target effects of the lysosomal acid lipase inhibitors Lalistat-1 and Lalistat-2 on neutral lipid hydrolases. PMID:35504532
Systematic evaluation and optimization of protein extraction parameters in diagnostic FFPE specimens. PMID:35501693
Activated SUMOylation restricts MHC class I antigen presentation to confer immune evasion in cancer. PMID:35499080
Large-Scale Protein and Phosphoprotein Profiling to Explore Potato Resistance Mechanisms to Spongospora subterranea Infection. PMID:35498715
Data of chemical composition of the particles from OH-initiated oxidation of 1,3,5-trimethylbenzene. PMID:35496493
Metaproteomic Profile of the Colonic Luminal Microbiota From Patients With Colon Cancer. PMID:35495697
Physiological substrates and ontogeny-specific expression of the ubiquitin ligases MARCH1 and MARCH8. PMID:35492398
Reovirus μ2 protein modulates host cell alternative splicing by reducing protein levels of U5 snRNP core components. PMID:35489070
Age and sex effects across the blood proteome after ionizing radiation exposure can bias biomarker screening and risk assessment. PMID:35487913
Doublecortin engages the microtubule lattice through a cooperative binding mode involving its C-terminal domain. PMID:35485925
Deficiency in coatomer complex I causes aberrant activation of STING signalling. PMID:35484149
Structural dynamics shape the fitness window of alanine:glyoxylate aminotransferase. PMID:35481644
Transcriptome and Proteome Analysis in LUHMES Cells Overexpressing Alpha-Synuclein. PMID:35481270
Canagliflozin mitigates ferroptosis and ameliorates heart failure in rats with preserved ejection fraction. PMID:35476142
Sculpting the Bacterial O-Glycoproteome: Functional Analyses of Orthologous Oligosaccharyltransferases with Diverse Targeting Specificities. PMID:35471082
HOXB13 suppresses de novo lipogenesis through HDAC3-mediated epigenetic reprogramming in prostate cancer. PMID:35468964
The Phenylacetic Acid Catabolic Pathway Regulates Antibiotic and Oxidative Stress Responses in Acinetobacter. PMID:35467424
Cellular responses to halofuginone reveal a vulnerability of the GCN2 branch of the integrated stress response. PMID:35466425
In-Depth Quantitative Proteomics Characterization of In Vitro Selected Miltefosine Resistance in Leishmania infantum. PMID:35466238
Plasma Exosomal Proteomic Pattern of Epstein-Barr Virus-Associated Hemophagocytic Lymphohistiocytosis. PMID:35464963
Capillary Electrophoresis Mass Spectrometry for Scalable Single-Cell Proteomics. PMID:35464213
Identifying Novel Osteoarthritis-Associated Genes in Human Cartilage Using a Systematic Meta-Analysis and a Multi-Source Integrated Network. PMID:35457215
Methylglyoxal Impairs Sister Chromatid Separation in Lymphocytes. PMID:35456956
Red Blood Cell BCL-xL Is Required for Plasmodium falciparum Survival: Insights into Host-Directed Malaria Therapies. PMID:35456874
Surfactin Shows Relatively Low Antimicrobial Activity against Bacillus subtilis and Other Bacterial Model Organisms in the Absence of Synergistic Metabolites. PMID:35456828
NMS-873 Leads to Dysfunctional Glycometabolism in A p97-Independent Manner in HCT116 Colon Cancer Cells. PMID:35456598
Modern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers-Example of Crohn's Disease and Ulcerative Colitis Flare-Ups. PMID:35456018
Application of Proteogenomics to Urine Analysis towards the Identification of Novel Biomarkers of Prostate Cancer: An Exploratory Study. PMID:35454907
Combined Alcohol Exposure and KRAS Mutation in Human Pancreatic Ductal Epithelial Cells Induces Proliferation and Alters Subtype Signatures Determined by Multi-Omics Analysis. PMID:35454872
Defective Proinsulin Handling Modulates the MHC I Bound Peptidome and Activates the Inflammasome in β-Cells. PMID:35453564
Mycobacterium tuberculosis Affects Protein and Lipid Content of Circulating Exosomes in Infected Patients Depending on Tuberculosis Disease State. PMID:35453532
Serum Proteomic Profile of Asthmatic Patients after Six Months of Benralizumab and Mepolizumab Treatment. PMID:35453511
Comparative Proteomic Analysis of Rhizoctonia solani Isolates Identifies the Differentially Expressed Proteins with Roles in Virulence. PMID:35448601
Identification of distinct N-glycosylation patterns on extracellular vesicles from small-cell and non-small-cell lung cancer cells. PMID:35447118
Expression of the Cyanobacterial FoF1 ATP Synthase Regulator AtpΘ Depends on Small DNA-Binding Proteins and Differential mRNA Stability. PMID:35446123
Age-Dependent Increase in Schmidt-Lanterman Incisures and a Cadm4-Associated Membrane Skeletal Complex in Fatty Acid 2-hydroxylase Deficient Mice: a Mouse Model of Spastic Paraplegia SPG35. PMID:35445918
Kinase Inhibitors as Potential Therapeutic Agents in the Treatment of COVID-19. PMID:35444538
Coral holobiont cues prime Endozoicomonas for a symbiotic lifestyle. PMID:35444262
A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. PMID:35442950
A novel screening strategy to identify histone methyltransferase inhibitors reveals a crosstalk between DOT1L and CARM1. PMID:35441144
USP25 promotes pathological HIF-1-driven metabolic reprogramming and is a potential therapeutic target in pancreatic cancer. PMID:35440539
Selective phosphorylation of threonine residues defines GPR84-arrestin interactions of biased ligands. PMID:35427647
Cathelicidin-3 Associated With Serum Extracellular Vesicles Enables Early Diagnosis of a Transmissible Cancer. PMID:35422813
Adaptive responses of marine diatoms to zinc scarcity and ecological implications. PMID:35422102
A conserved module regulates receptor kinase signalling in immunity and development. PMID:35422079
Hidden information on protein function in censuses of proteome foldedness. PMID:35422070
Humanized mice reveal a macrophage-enriched gene signature defining human lung tissue protection during SARS-CoV-2 infection. PMID:35421379
Analysis of human brain tissue derived from DBS surgery. PMID:35418104
The Arabidopsis F-box protein FBW2 targets AGO1 for degradation to prevent spurious loading of illegitimate small RNA. PMID:35417704
TMT-Based Multiplexed Quantitation of N-Glycopeptides Reveals Glycoproteome Remodeling Induced by Oncogenic Mutations. PMID:35415375
Identification and Tetramer Structure of Hemin-Binding Protein SPD_0310 Linked to Iron Homeostasis and Virulence of Streptococcus pneumoniae. PMID:35414267
A machine learning algorithm with subclonal sensitivity reveals widespread pan-cancer human leukocyte antigen loss of heterozygosity. PMID:35414054
Simple, efficient and thorough shotgun proteomic analysis with PatternLab V. PMID:35411045
Protein Profiling of WERI-RB1 and Etoposide-Resistant WERI-ETOR Reveals New Insights into Topoisomerase Inhibitor Resistance in Retinoblastoma. PMID:35409416
Isoprene Emission Influences the Proteomic Profile of Arabidopsis Plants under Well-Watered and Drought-Stress Conditions. PMID:35409196
Proteomics Approach Highlights Early Changes in Human Fibroblasts-Pancreatic Ductal Adenocarcinoma Cells Crosstalk. PMID:35406724
The Emerging Role of E3 Ubiquitin Ligase SMURF2 in the Regulation of Transcriptional Co-Repressor KAP1 in Untransformed and Cancer Cells and Tissues. PMID:35406379
A G-Protein-Coupled Receptor Modulates Gametogenesis via PKG-Mediated Signaling Cascade in Plasmodium berghei. PMID:35404079
The E3 ubiquitin ligase SMURF2 stabilizes RNA editase ADAR1p110 and promotes its adenosine-to-inosine (A-to-I) editing function. PMID:35403872
Role of the prorenin receptor in endometrial cancer cell growth. PMID:35401936
Soybean Leaf Proteomic Profile Influenced by Rhizobacteria Under Optimal and Salt Stress Conditions. PMID:35401626
Preclinical Studies on Convalescent Human Immune Plasma-Derived Exosome: Omics and Antiviral Properties to SARS-CoV-2. PMID:35401544
Proteomic Analysis of the Non-genetic Response to Cisplatin in Lung Cancer Cells. PMID:35399307
The serum of COVID-19 asymptomatic patients up-regulates proteins related to endothelial dysfunction and viral response in circulating angiogenic cells ex-vivo. PMID:35397534
Wheat grain proteomic and protein-metabolite interactions analyses provide insights into plant growth promoting bacteria-arbuscular mycorrhizal fungi-wheat interactions. PMID:35396966
Specific inflammatory osteoclast precursors induced during chronic inflammation give rise to highly active osteoclasts associated with inflammatory bone loss. PMID:35396510
Glyco-Decipher enables glycan database-independent peptide matching and in-depth characterization of site-specific N-glycosylation. PMID:35393418
Functional and structural deficiencies of Gemin5 variants associated with neurological disorders. PMID:35393353
A Proteomic Analysis Indicates That Oxidative Stress Is the Common Feature Triggering Antibiotic Production in Streptomyces coelicolor and in the pptA Mutant of Streptomyces lividans. PMID:35392450
Acetate Degradation at Low pH by the Moderately Acidophilic Sulfate Reducer Acididesulfobacillus acetoxydans gen. nov. sp. nov. PMID:35391737
Activation of the essential kinase PDK1 by phosphoinositide-driven trans-autophosphorylation. PMID:35387990
The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network. PMID:35386977
Integrative molecular roadmap for direct conversion of fibroblasts into myocytes and myogenic progenitor cells. PMID:35385316
Proteome metabolome and transcriptome data for three Symbiodiniaceae under ambient and heat stress conditions. PMID:35383179
Integrative analysis of non-small cell lung cancer patient-derived xenografts identifies distinct proteotypes associated with patient outcomes. PMID:35383171
Downregulation of KRAB zinc finger proteins in 5-fluorouracil resistant colorectal cancer cells. PMID:35379199
Characterization of the Secretome, Transcriptome, and Proteome of Human β Cell Line EndoC-βH1. PMID:35378291
Spirocyclic dimer SpiD7 activates the unfolded protein response to selectively inhibit growth and induce apoptosis of cancer cells. PMID:35378132
Proteasome complexes experience profound structural and functional rearrangements throughout mammalian spermatogenesis. PMID:35377789
Proteomic Response Revealed Signaling Pathways Involving in the Mechanism of Polymyxin B-Induced Melanogenesis. PMID:35377227
The HSP40 chaperone Ydj1 drives amyloid beta 42 toxicity. PMID:35373908
Host Immune Responses to Salivary Components - A Critical Facet of Tick-Host Interactions. PMID:35372098
The Lack of Dopamine Transporter Is Associated With Conditional Associative Learning Impairments and Striatal Proteomic Changes. PMID:35370807
Immunopeptidomic analyses of colorectal cancers with and without microsatellite instability. PMID:35367648
Discovery of a signaling feedback circuit that defines interferon responses in myeloproliferative neoplasms. PMID:35365653
Class I HDAC overexpression promotes temozolomide resistance in glioma cells by regulating RAD18 expression. PMID:35365623
Current progress and open challenges for applying deep learning across the biosciences. PMID:35365602
Computational analyses of mechanism of action (MoA): data, methods and integration. PMID:35360890
Arabidopsis Iron Superoxide Dismutase FSD1 Protects Against Methyl Viologen-Induced Oxidative Stress in a Copper-Dependent Manner. PMID:35360337
Extracellular Vesicles From LPS-Treated Macrophages Aggravate Smooth Muscle Cell Calcification by Propagating Inflammation and Oxidative Stress. PMID:35356285
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics. PMID:35354825
Quantitative proteomic analysis of bronchoalveolar lavage fluid in West Highland white terriers with canine idiopathic pulmonary fibrosis. PMID:35354473
Kinase domain autophosphorylation rewires the activity and substrate specificity of CK1 enzymes. PMID:35353987
Comprehensive spectral libraries for various rabbit eye tissue proteomes. PMID:35351915
K27-linked ubiquitylation promotes p97 substrate processing and is essential for cell proliferation. PMID:35349166
Protein folding stabilities are a major determinant of oxidation rates for buried methionine residues. PMID:35346688
Decoding the Absolute Stoichiometric Composition and Structural Plasticity of α-Carboxysomes. PMID:35343789
Proteomic Identification of a Gastric Tumor ECM Signature Associated With Cancer Progression. PMID:35340765
Discovery of Proteins Responsible for Resistance to Three Chemotherapy Drugs in Breast Cancer Cells Using Proteomics and Bioinformatics Analysis. PMID:35335125
Genome-wide screening identifies Polycomb repressive complex 1.3 as an essential regulator of human naïve pluripotent cell reprogramming. PMID:35333572
An infection-induced oxidation site regulates legumain processing and tumor growth. PMID:35332331
Sulforaphane suppresses metastasis of triple-negative breast cancer cells by targeting the RAF/MEK/ERK pathway. PMID:35332167
UBR4/POE facilitates secretory trafficking to maintain circadian clock synchrony. PMID:35332162
Fe3+-NTA magnetic beads as an alternative to spin column-based phosphopeptide enrichment. PMID:35331916
Non-Apoptotic Caspase Activity Preferentially Targets a Novel Consensus Sequence Associated With Cytoskeletal Proteins in the Developing Auditory Brainstem. PMID:35330912
Viewing Cortical Collecting Duct Function Through Phenotype-guided Single-Tubule Proteomics. PMID:35330743
Alteration of Serum Proteome in Levo-Thyroxine-Euthyroid Thyroidectomized Patients. PMID:35330001
Hepatocyte Proteome Alterations Induced by Individual and Combinations of Common Free Fatty Acids. PMID:35328776
ABPP-HT*-Deep Meets Fast for Activity-Based Profiling of Deubiquitylating Enzymes Using Advanced DIA Mass Spectrometry Methods. PMID:35328685
The Proteome of Antibody-Mediated Rejection: From Glomerulitis to Transplant Glomerulopathy. PMID:35327371
CDK6 Degradation Is Counteracted by p16INK4A and p18INK4C in AML. PMID:35326705
The Preclinical Evaluation of a Second-Generation Antivenom for Treating Snake Envenoming in India. PMID:35324665
Identification and Characterization of Three Chitinases with Potential in Direct Conversion of Crystalline Chitin into N,N'-diacetylchitobiose. PMID:35323464
Altered proteome in translation initiation fidelity defective eIF5G31R mutant causes oxidative stress and DNA damage. PMID:35322093
Adipose Dysfunction in Adulthood Insulin Resistance of Low-Birth Weight Mice: A Proteomics Study. PMID:35321351
Restriction factor screening identifies RABGAP1L-mediated disruption of endocytosis as a host antiviral defense. PMID:35320721
KCNQ2 and KCNQ5 form heteromeric channels independent of KCNQ3. PMID:35320039
Data-independent acquisition mass spectrometry in severe rheumatic heart disease (RHD) identifies a proteomic signature showing ongoing inflammation and effectively classifying RHD cases. PMID:35317720
Mycobacterium tuberculosis encodes a YhhN family membrane protein with lysoplasmalogenase activity that protects against toxic host lysolipids. PMID:35314194
Proteomic profiling of hydatid fluid from pulmonary cystic echinococcosis. PMID:35313982
Hyperosmolality in CHO cell culture: effects on the proteome. PMID:35312825
Phosphorylation of SHP2 at Tyr62 Enables Acquired Resistance to SHP2 Allosteric Inhibitors in FLT3-ITD-Driven AML. PMID:35311954
Deciphering Black Extrinsic Tooth Stain Composition in Children Using Metaproteomics. PMID:35309464
Drug-like molecules with anti-trypanothione synthetase activity identified by high throughput screening. PMID:35306933
Beta-blocker/ACE inhibitor therapy differentially impacts the steady state signaling landscape of failing and non-failing hearts. PMID:35306519
Repositioning of a Diaminothiazole Series Confirmed to Target the Cyclin-Dependent Kinase CRK12 for Use in the Treatment of African Animal Trypanosomiasis. PMID:35303411
Shotgun and TMT-Labeled Proteomic Analysis of the Ovarian Proteins of an Insect Vector, Aedes aegypti (Diptera: Culicidae). PMID:35303100
Morphine-induced modulation of Nrf2-antioxidant response element signaling pathway in primary human brain microvascular endothelial cells. PMID:35301408
Indisulam targets RNA splicing and metabolism to serve as a therapeutic strategy for high-risk neuroblastoma. PMID:35296644
Spatial proteomics finds CD155 and Endophilin-A1 as mediators of growth and invasion in medulloblastoma. PMID:35296518
Liquid Chromatography-Tandem Mass Spectrometry Analysis Demonstrates a Decrease in Porins and Increase in CMY-2 β-Lactamases in Escherichia coli Exposed to Increasing Concentrations of Meropenem. PMID:35295306
Experimental evolution links post-transcriptional regulation to Leishmania fitness gain. PMID:35294501
Galectin-1 prevents pathological vascular remodeling in atherosclerosis and abdominal aortic aneurysm. PMID:35294231
Characterization of a highly diverged mitochondrial ATP synthase Fo subunit in Trypanosoma brucei. PMID:35293314
BRCA1 mutations in high-grade serous ovarian cancer are associated with proteomic changes in DNA repair, splicing, transcription regulation and signaling. PMID:35292711
Functional characterization of the human Cdk10/Cyclin Q complex. PMID:35291876
Migraine-Associated Mutation in the Na,K-ATPase Leads to Disturbances in Cardiac Metabolism and Reduced Cardiac Function. PMID:35289188
Time-series transcriptomics and proteomics reveal alternative modes to decode p53 oscillations. PMID:35285572
Visualisation of proteome-wide ordered protein abundances in Trypanosoma brucei. PMID:35284642
Visualisation of experimentally determined and predicted protein N-glycosylation and predicted glycosylphosphatidylinositol anchor addition in Trypanosoma brucei. PMID:35284639
Stoichiometry of the Gene Products From the Tetrachloroethene Reductive Dehalogenase Operon pceABCT. PMID:35283847
Streptococcus pneumoniae and Influenza A Virus Co-Infection Induces Altered Polyubiquitination in A549 Cells. PMID:35281454
Recurrent Co-Option and Recombination of Cytokine and Three Finger Proteins in Multiple Reproductive Tissues Throughout Salamander Evolution. PMID:35281090
The methyl phosphate capping enzyme Bmc1/Bin3 is a stable component of the fission yeast telomerase holoenzyme. PMID:35277511
Leveraging Parameter Dependencies in High-Field Asymmetric Waveform Ion-Mobility Spectrometry and Size Exclusion Chromatography for Proteome-wide Cross-Linking Mass Spectrometry. PMID:35276035
Progressive axonopathy when oligodendrocytes lack the myelin protein CMTM5. PMID:35274615
Conserved exchange of paralog proteins during neuronal differentiation. PMID:35273078
Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin β-ODAP in grass pea. PMID:35271851
Reduction in Phosphoribulokinase Amount and Re-Routing Metabolism in Chlamydomonas reinhardtii CP12 Mutants. PMID:35269851
Protein Expression of AEBP1, MCM4, and FABP4 Differentiate Osteogenic, Adipogenic, and Mesenchymal Stromal Stem Cells. PMID:35269711
Red-Fleshed Apples Rich in Anthocyanins and White-Fleshed Apples Modulate the Aorta and Heart Proteome in Hypercholesterolaemic Rats: The AppleCOR Study. PMID:35268023
Tryptophan depletion results in tryptophan-to-phenylalanine substitutants. PMID:35264796
Co-translational assembly orchestrates competing biogenesis pathways. PMID:35264577
Sirtuin-1 sensitive lysine-136 acetylation drives phase separation and pathological aggregation of TDP-43. PMID:35264561
Linkage reprogramming by tailor-made E3s reveals polyubiquitin chain requirements in DNA-damage bypass. PMID:35263628
G-quadruplex inducer/stabilizer pyridostatin targets SUB1 to promote cytotoxicity of a transplatinum complex. PMID:35258624
Cell-surface tethered promiscuous biotinylators enable comparative small-scale surface proteomic analysis of human extracellular vesicles and cells. PMID:35257663
HLA-A*11:01-restricted CD8+ T cell immunity against influenza A and influenza B viruses in Indigenous and non-Indigenous people. PMID:35255101
A new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum-infected red blood cell proteome. PMID:35254426
Proteome dataset of sea bass (Dicentrarchus labrax) skin-scales exposed to fluoxetine and estradiol. PMID:35252491
Unexpected Arabinosylation after Humanization of Plant Protein N-Glycosylation. PMID:35252146
An Integrative Multiomics Approach to Characterize Prebiotic Inulin Effects on Faecalibacterium prausnitzii. PMID:35252133
Inward Outward Signaling in Ovarian Cancer: Morpho-Phospho-Proteomic Profiling Upon Application of Hypoxia and Shear Stress Characterizes the Adaptive Plasticity of OVCAR-3 and SKOV-3 Cells. PMID:35251951
Proteome and Network Analysis Provides Novel Insights Into Developing and Established Chemotherapy-Induced Peripheral Neuropathy. PMID:35250568
Plasma proteome changes linked to late phase response after inhaled allergen challenge in asthmatics. PMID:35248034
Identification and characterization of Crumbs polarity complex proteins in Caenorhabditis elegans. PMID:35247383
Landscape of adenosine-to-inosine RNA recoding across human tissues. PMID:35246538
White matter integrity in mice requires continuous myelin synthesis at the inner tongue. PMID:35246535
In-Depth Profiling of O-Glycan Isomers in Human Cells Using C18 Nanoliquid Chromatography-Mass Spectrometry and Glycogenomics. PMID:35245040
SU086, an inhibitor of HSP90, impairs glycolysis and represents a treatment strategy for advanced prostate cancer. PMID:35243415
Proteomics and image screening data of cellular secretomes and their biological effects: Comparing the signals sent by cardiac stromal cells and dermal fibroblasts in culture. PMID:35242943
Plasma proteomics data from hibernating and active Scandinavian brown bears. PMID:35242939
Proteomic analysis distinguishes extracellular vesicles produced by cancerous versus healthy pancreatic organoids. PMID:35241737
NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation. PMID:35241478
Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria. PMID:35240043
Upstream open reading frames regulate translation of cancer-associated transcripts and encode HLA-presented immunogenic tumor antigens. PMID:35239002
Eukaryotic catecholamine hormones influence the chemotactic control of Vibrio campbellii by binding to the coupling protein CheW. PMID:35238645
Two zinc finger proteins with functions in m6A writing interact with HAKAI. PMID:35236848
FAIMS Enhances the Detection of PTM Crosstalk Sites. PMID:35235327
CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis. PMID:35234914
Novel protein markers of androgen activity in humans: proteomic study of plasma from young chemically castrated men. PMID:35230239
Mitochondrial Dysfunction in Rabies Virus-Infected Human and Canine Brains. PMID:35229271
Gut Commensal Bacteroidetes Encode a Novel Class of Vitamin B12-Binding Proteins. PMID:35227073
Bovine Peripheral Blood Derived Lymphocyte Proteome and Secretome Show Divergent Reaction of Bovine Immune Phenotypes after Stimulation with Pokeweed Mitogen. PMID:35225986
Activation of regulatory T cells triggers specific changes in glycosylation associated with Siglec-1-dependent inflammatory responses. PMID:35224210
Proteomic Signatures of Antimicrobial Resistance in Yersinia pestis and Francisella tularensis. PMID:35223919
Silencing of Opisthorchis viverrini Tetraspanin Gene Expression Results in Reduced Secretion of Extracellular Vesicles. PMID:35223551
Characterization of Metronidazole-Resistant Giardia intestinalis Lines by Comparative Transcriptomics and Proteomics. PMID:35222342
Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study. PMID:35222333
Ecological Interactions of Cyanobacteria and Heterotrophs Enhances the Robustness of Cyanobacterial Consortium for Carbon Sequestration. PMID:35222325
SP3-Enabled Rapid and High Coverage Chemoproteomic Identification of Cell-State-Dependent Redox-Sensitive Cysteines. PMID:35219905
A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6. PMID:35217664
Hypoxia Is a Dominant Remodeler of the Effector T Cell Surface Proteome Relative to Activation and Regulatory T Cell Suppression. PMID:35217172
A blood atlas of COVID-19 defines hallmarks of disease severity and specificity. PMID:35216673
Chemical probing provides insight into the native assembly state of a bacterial microcompartment. PMID:35216657
Review of Liquid Chromatography-Mass Spectrometry-Based Proteomic Analyses of Body Fluids to Diagnose Infectious Diseases. PMID:35216306
Micro-RNA and Proteomic Profiles of Plasma-Derived Exosomes from Irradiated Mice Reveal Molecular Changes Preventing Apoptosis in Neonatal Cerebellum. PMID:35216284
The Nitrobenzoxadiazole Derivative NBDHEX Behaves as Plasmodium falciparum Gametocyte Selective Inhibitor with Malaria Parasite Transmission Blocking Activity. PMID:35215282
Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery. PMID:35213534
Protein with negative surface charge distribution, Bnr1, shows characteristics of a DNA-mimic protein and may be involved in the adaptation of Burkholderia cenocepacia. PMID:35212475
A tRNA modifying enzyme as a tunable regulatory nexus for bacterial stress responses and virulence. PMID:35212379
Virulence Biomarkers of Bursaphelenchus xylophilus: A Proteomic Approach. PMID:35211137
Identification of distinct cytotoxic granules as the origin of supramolecular attack particles in T lymphocytes. PMID:35210420
Mitochondrial COA7 is a heme-binding protein with disulfide reductase activity, which acts in the early stages of complex IV assembly. PMID:35210360
Plasma Proteomic Changes of Atherosclerosis after Exercise in ApoE Knockout Mice. PMID:35205118
Nitric Oxide Resistance in Leishmania (Viannia) braziliensis Involves Regulation of Glucose Consumption, Glutathione Metabolism and Abundance of Pentose Phosphate Pathway Enzymes. PMID:35204161
Cycloastragenol Inhibits Experimental Abdominal Aortic Aneurysm Progression. PMID:35203568
Cannabinoids Reduce Extracellular Vesicle Release from HIV-1 Infected Myeloid Cells and Inhibit Viral Transcription. PMID:35203372
In-Depth Matrisome and Glycoproteomic Analysis of Human Brain Glioblastoma Versus Control Tissue. PMID:35202840
Targeting DNA topoisomerases or checkpoint kinases results in an overload of chaperone systems, triggering aggregation of a metastable subproteome. PMID:35200138
Tailored Pyridoxal Probes Unravel Novel Cofactor-Dependent Targets and Antibiotic Hits in Critical Bacterial Pathogens. PMID:35199904
Spotlight on alternative frame coding: Two long overlapping genes in Pseudomonas aeruginosa are translated and under purifying selection. PMID:35198897
The proteomic profile of the human myotendinous junction. PMID:35198892
Nrf2 activation reprograms macrophage intermediary metabolism and suppresses the type I interferon response. PMID:35198887
Evidence for a trap-and-flip mechanism in a proton-dependent lipid transporter. PMID:35197476
Protective immune trajectories in early viral containment of non-pneumonic SARS-CoV-2 infection. PMID:35197461
Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple myeloma. PMID:35197447
Stratification of follicular thyroid tumours using data-independent acquisition proteomics and a comprehensive thyroid tissue spectral library. PMID:35194950
A deeper look at carrier proteome effects for single-cell proteomics. PMID:35194133
A synthetic protein as efficient multitarget regulator against complement over-activation. PMID:35194132
Proteome analysis of the Gram-positive fish pathogen Renibacterium salmoninarum reveals putative role of membrane vesicles in virulence. PMID:35194033
Illumination of the Endogenous Insulin-Regulated TBC1D4 Interactome in Human Skeletal Muscle. PMID:35192682
Intercepting IRE1 kinase-FMRP signaling prevents atherosclerosis progression. PMID:35191199
The intrinsically disordered TSSC4 protein acts as a helicase inhibitor, placeholder and multi-interaction coordinator during snRNP assembly and recycling. PMID:35188580
The transient Spt4-Spt5 complex as an upstream regulator of non-coding RNAs during development. PMID:35188560
Database search engines and target database features impinge upon the identification of post-translationally cis-spliced peptides in HLA class I immunopeptidomes. PMID:35184383
Transcription factor protein interactomes reveal genetic determinants in heart disease. PMID:35182466
Deficiency of Parkinson's Related Protein DJ-1 Alters Cdk5 Signalling and Induces Neuronal Death by Aberrant Cell Cycle Re-entry. PMID:35182267
Regulated cell death joins in atherosclerotic plaque silent progression. PMID:35181730
Mapping Proteome Changes in Microsatellite Stable, Recurrent Colon Cancer Reveals a Significant Immune System Signature. PMID:35181583
Sequence and structural variations determining the recruitment of WNK kinases to the KLHL3 E3 ligase. PMID:35179207
Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1. PMID:35177693
CPEB1 directs muscle stem cell activation by reprogramming the translational landscape. PMID:35177647
Kansl1 haploinsufficiency impairs autophagosome-lysosome fusion and links autophagic dysfunction with Koolen-de Vries syndrome in mice. PMID:35177641
HIV-1 and methamphetamine alter galectins -1, -3, and -9 in human monocyte-derived macrophages. PMID:35175539
Proteomic analysis of archival breast cancer clinical specimens identifies biological subtypes with distinct survival outcomes. PMID:35173148
Proteomics Indicates Lactate Dehydrogenase Is Prognostic in Acetaminophen-Induced Acute Liver Failure Patients and Reveals Altered Signaling Pathways. PMID:35172013
A balanced Oct4 interactome is crucial for maintaining pluripotency. PMID:35171666
M24B aminopeptidase inhibitors selectively activate the CARD8 inflammasome. PMID:35165443
Metabolic determination of cell fate through selective inheritance of mitochondria. PMID:35165416
Integrative omics reveals subtle molecular perturbations following ischemic conditioning in a porcine kidney transplant model. PMID:35164671
Evaluation of Fast and Sensitive Proteome Profiling of FF and FFPE Kidney Patient Tissues. PMID:35164409
Unravelling the Helianthus tuberosus L. (Jerusalem Artichoke, Kiku-Imo) Tuber Proteome by Label-Free Quantitative Proteomics. PMID:35164374
ERAP2 Inhibition Induces Cell-Surface Presentation by MOLT-4 Leukemia Cancer Cells of Many Novel and Potentially Antigenic Peptides. PMID:35163832
Multiple Abiotic Stresses Applied Simultaneously Elicit Distinct Responses in Two Contrasting Rice Cultivars. PMID:35163659
Cyclophilin A Is Not Acetylated at Lysine-82 and Lysine-125 in Resting and Stimulated Platelets. PMID:35163387
Abiotic Stress and Belowground Microbiome: The Potential of Omics Approaches. PMID:35163015
Mapping PP1c and Its Inhibitor 2 Interactomes Reveals Conserved and Specific Networks in Asexual and Sexual Stages of Plasmodium. PMID:35162991
Differential Protein Expression in Berry Skin from Red Grapes with Varying Hybrid Character. PMID:35162980
Spatial Proteomic Analysis of Isogenic Metastatic Colorectal Cancer Cells Reveals Key Dysregulated Proteins Associated with Lymph Node, Liver, and Lung Metastasis. PMID:35159257
Site-Specific Profiling of 4-Thiouridine Across Transfer RNA Genes in Escherichia coli. PMID:35155896
Molecular Architecture of the Antiophidic Protein DM64 and its Binding Specificity to Myotoxin II From Bothrops asper Venom. PMID:35155563
Interaction of transcription factor FoxO3 with histone acetyltransferase complex subunit TRRAP modulates gene expression and apoptosis. PMID:35151693
Allosteric control of Ubp6 and the proteasome via a bidirectional switch. PMID:35149681
Dynamics of huntingtin protein interactions in the striatum identifies candidate modifiers of Huntington disease. PMID:35148841
Thermodynamics contributes to high limonene productivity in cyanobacteria. PMID:35145855
Secreted Toxins From Staphylococcus aureus Strains Isolated From Keratinocyte Skin Cancers Mediate Pro-tumorigenic Inflammatory Responses in the Skin. PMID:35145494
Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies. PMID:35145105
Quantitative proteomic analysis of serum-purified exosomes identifies putative pre-eclampsia-associated biomarkers. PMID:35144530
A novel mistranslating tRNA model in Drosophila melanogaster has diverse, sexually dimorphic effects. PMID:35143655
Cell biological analysis reveals an essential role for Pfcerli2 in erythrocyte invasion by malaria parasites. PMID:35140336
A comprehensive landscape of 60S ribosome biogenesis factors. PMID:35139378
Complementary proteome and glycoproteome access revealed through comparative analysis of reversed phase and porous graphitic carbon chromatography. PMID:35137243
Age-related long-term response in rat thyroid tissue and plasma after internal low dose exposure to 131I. PMID:35136135
Membrane-associated cytoplasmic granules carrying the Argonaute protein WAGO-3 enable paternal epigenetic inheritance in Caenorhabditis elegans. PMID:35132225
Secreted protein markers in oral squamous cell carcinoma (OSCC). PMID:35130834
Proteomic Changes in the Monolayer and Spheroid Melanoma Cell Models of Acquired Resistance to BRAF and MEK1/2 Inhibitors. PMID:35128241
Proteome data of neuroblastoma cells overexpressing Neuroglobin. PMID:35128003
Isotopic N,N-dimethyl leucine tags for absolute quantification of clusterin and apolipoprotein E in Alzheimer's disease. PMID:35124278
Sex-related differential susceptibility to ponatinib cardiotoxicity and differential modulation of the Notch1 signalling pathway in a murine model. PMID:35122387
A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy. PMID:35121989
IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapy. PMID:35121883
Optimization of small extracellular vesicle isolation from expressed prostatic secretions in urine for in-depth proteomic analysis. PMID:35119778
Surgical Trauma in Mice Modifies the Content of Circulating Extracellular Vesicles. PMID:35116043
Exploring the Multi-Tissue Crosstalk Relevant to Insulin Resistance Through Network-Based Analysis. PMID:35116003
Polypyrimidine tract binding proteins PTBP1 and PTBP2 interact with distinct proteins under splicing conditions. PMID:35113929
Proteomics Study Reveals the Anti-Depressive Mechanisms and the Compatibility Advantage of Chaihu-Shugan-San in a Rat Model of Chronic Unpredictable Mild Stress. PMID:35111057
Proteomic landscape of SARS-CoV-2- and MERS-CoV-infected primary human renal epithelial cells. PMID:35110370
Multiplexed Isobaric Quantitative Cross-Linking Reveals Drug-Induced Interactome Changes in Breast Cancer Cells. PMID:35107270
Understanding saffron biology using omics- and bioinformatics tools: stepping towards a better Crocus phenome. PMID:35106686
Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces. PMID:35106611
Deep models of integrated multiscale molecular data decipher the endothelial cell response to ionizing radiation. PMID:35106469
Cyclic AMP signalling and glucose metabolism mediate pH taxis by African trypanosomes. PMID:35105902
SARS-CoV-2 genomes from Saudi Arabia implicate nucleocapsid mutations in host response and increased viral load. PMID:35105893
Cytoplasmic switch of ARS2 isoforms promotes nonsense-mediated mRNA decay and arsenic sensitivity. PMID:35104878
A Deep-Sea Bacterium Senses Blue Light via a BLUF-Dependent Pathway. PMID:35103488
Agonist-induced phosphorylation of orthologues of the orphan receptor GPR35 functions as an activation sensor. PMID:35101446
Modeling the CRL4A ligase complex to predict target protein ubiquitination induced by cereblon-recruiting PROTACs. PMID:35101445
Citrobacter rodentium Infection Induces Persistent Molecular Changes and Interferon Gamma-Dependent Major Histocompatibility Complex Class II Expression in the Colonic Epithelium. PMID:35100877
Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters. PMID:35100428
A20 and ABIN-1 cooperate in balancing CBM complex-triggered NF-κB signaling in activated T cells. PMID:35099607
Subcellular proteomics of dopamine neurons in the mouse brain. PMID:35098924
Protein signatures to distinguish aggressive from indolent prostate cancer. PMID:35098564
Complexome Profiling-Exploring Mitochondrial Protein Complexes in Health and Disease. PMID:35096826
Campylobacter jejuni Virulence Factors Identified by Modulating Their Synthesis on Ribosomes With Altered rRNA Methylation. PMID:35096652
N-glycosylation regulates MET processing and signaling. PMID:35092134
MITF activity is regulated by a direct interaction with RAF proteins in melanoma cells. PMID:35091687
An advanced method for the release, enrichment and purification of high-quality Arabidopsis thaliana rosette leaf trichomes enables profound insights into the trichome proteome. PMID:35086542
Proteomic profiling of cisplatin-resistant and cisplatin-sensitive germ cell tumour cell lines using quantitative mass spectrometry. PMID:35084545
Brahma safeguards canalization of cardiac mesoderm differentiation. PMID:35082446
Function-guided proximity mapping unveils electrophilic-metabolite sensing by proteins not present in their canonical locales. PMID:35082156
Ovarian carcinoma immunoreactive antigen-like protein 2 (OCIAD2) is a novel complex III-specific assembly factor in mitochondria. PMID:35080992
Substrate-bound and substrate-free outward-facing structures of a multidrug ABC exporter. PMID:35080979
Potential Tear Biomarkers for the Diagnosis of Parkinson's Disease-A Pilot Study. PMID:35076620
Kidney organoids recapitulate human basement membrane assembly in health and disease. PMID:35076391
Tear proteomics reveals the molecular basis of the efficacy of human recombinant nerve growth factor treatment for Neurotrophic Keratopathy. PMID:35075190
Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria. PMID:35074914
SMARCA5 interacts with NUP98-NSD1 oncofusion protein and sustains hematopoietic cells transformation. PMID:35073946
Ceragenins and Antimicrobial Peptides Kill Bacteria through Distinct Mechanisms. PMID:35073755
Urine Proteomics for Noninvasive Monitoring of Biomarkers in Bronchopulmonary Dysplasia. PMID:35073553
Biological and Molecular Effects of Trypanosoma cruzi Residence in a LAMP-Deficient Intracellular Environment. PMID:35071040
To New Beginnings: Riboproteogenomics Discovery of N-Terminal Proteoforms in Arabidopsis Thaliana. PMID:35069635
Lipid droplet-mitochondria coupling via perilipin 5 augments respiratory capacity but is dispensable for FA oxidation. PMID:35065923
SFPQ-ABL1 and BCR-ABL1 use different signaling networks to drive B-cell acute lymphoblastic leukemia. PMID:35061886
Fasting improves therapeutic response in hepatocellular carcinoma through p53-dependent metabolic synergism. PMID:35061544
Overexpression of Parkin in clear cell renal cell carcinoma decreases tumor aggressiveness by regulating CKS2 levels. PMID:35059737
Biallelic Variants in PYROXD2 Cause a Severe Infantile Metabolic Disorder Affecting Mitochondrial Function. PMID:35055180
ERK1/2 Activity Is Critical for the Outcome of Ischemic Stroke. PMID:35054890
The Periplasmic Oxidoreductase DsbA Is Required for Virulence of the Phytopathogen Dickeya solani. PMID:35054882
Three Microbial Musketeers of the Seas: Shewanella baltica, Aliivibrio fischeri and Vibrio harveyi, and Their Adaptation to Different Salinity Probed by a Proteomic Approach. PMID:35054801
Proteomic Response of Deinococcus radiodurans to Short-Term Real Microgravity during Parabolic Flight Reveals Altered Abundance of Proteins Involved in Stress Response and Cell Envelope Functions. PMID:35054415
Identification of the Cysteine Protease Legumain as a Potential Chronic Hypoxia-Specific Multiple Myeloma Target Gene. PMID:35053409
Revisiting the Non-Coding Nature of Pospiviroids. PMID:35053381
Quantitative Insights into the Contribution of Nematocysts to the Adaptive Success of Cnidarians Based on Proteomic Analysis. PMID:35053089
Effects of Erythrodiol on the Antioxidant Response and Proteome of HepG2 Cells. PMID:35052578
Immunopeptidomic analysis of influenza A virus infected human tissues identifies internal proteins as a rich source of HLA ligands. PMID:35051231
An Integrative Sialomic Analysis Reveals Molecules From Triatoma sordida (Hemiptera: Reduviidae). PMID:35047420
A phase 2 single center open label randomised control trial for convalescent plasma therapy in patients with severe COVID-19. PMID:35046397
Parkinson's disease protein PARK7 prevents metabolite and protein damage caused by a glycolytic metabolite. PMID:35046029
Comparative analysis of ChAdOx1 nCoV-19 and Ad26.COV2.S SARS-CoV-2 vector vaccines. PMID:35045692
Interrogating Kinase-Substrate Relationships with Proximity Labeling and Phosphorylation Enrichment. PMID:35044772
A bipartite chromatophore transit peptide and N-terminal protein processing in the Paulinella chromatophore. PMID:35043947
Proteomic profiling identifies novel diagnostic biomarkers and molecular subtypes for mucinous tubular and spindle cell carcinoma of the kidney. PMID:35043389
Deciphering the mechanism of processive ssDNA digestion by the Dna2-RPA ensemble. PMID:35042867
A network of Gαi signaling partners is revealed by proximity labeling proteomics analysis and includes PDZ-RhoGEF. PMID:35041463
Truncated PARP1 mediates ADP-ribosylation of RNA polymerase III for apoptosis. PMID:35039483
The Role of Antibiotic Resistance Genes in the Fitness Cost of Multiresistance Plasmids. PMID:35038907
Comment on: The m6A Reader IGF2BP2 Regulates Macrophage Phenotypic Activation and Inflammatory Diseases by Stabilizing TSC1 and PPARγ. PMID:35038236
Discrimination of Tilletia controversa from the T. caries/T. laevis complex by MALDI-TOF MS analysis of teliospores. PMID:35037998
Methyl-lysine readers PHF20 and PHF20L1 define two distinct gene expression-regulating NSL complexes. PMID:35033534
Comparative secretome analysis of Staphylococcus aureus strains with different within-herd intramammary infection prevalence. PMID:35030987
NuA4 and H2A.Z control environmental responses and autotrophic growth in Arabidopsis. PMID:35022409
Genetic alterations of the SUMO isopeptidase SENP6 drive lymphomagenesis and genetic instability in diffuse large B-cell lymphoma. PMID:35022408
Danger signal extracellular calcium initiates differentiation of monocytes into SPP1/osteopontin-producing macrophages. PMID:35022393
Integrated Proteomics-Based Physical and Functional Mapping of AXL Kinase Signaling Pathways and Inhibitors Define Its Role in Cell Migration. PMID:35022314
Targeted Profiling of Epitranscriptomic Reader, Writer, and Eraser Proteins Accompanied with Radioresistance in Breast Cancer Cells. PMID:35021009
Current status of PTMs structural databases: applications, limitations and prospects. PMID:35020020
Regulating peroxisome-ER contacts via the ACBD5-VAPB tether by FFAT motif phosphorylation and GSK3β. PMID:35019937
The C-Terminal Domains of the PB2 Subunit of the Influenza A Virus RNA Polymerase Directly Interact with Cellular GTPase Rab11a. PMID:35019720
Comparing the contents, functions and neonicotinoid take-up between floral and extrafloral nectar within a single species (Hemerocallis citrina Baroni). PMID:35018412
Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection. PMID:35017663
B cells imprint adoptively transferred CD8+ T cells with enhanced tumor immunity. PMID:35017148
Accurate and Automated High-Coverage Identification of Chemically Cross-Linked Peptides with MaxLynx. PMID:35014260
THEM6-mediated reprogramming of lipid metabolism supports treatment resistance in prostate cancer. PMID:35014179
The ubiquitin-dependent ATPase p97 removes cytotoxic trapped PARP1 from chromatin. PMID:35013556
Hypocrates is a genetically encoded fluorescent biosensor for (pseudo)hypohalous acids and their derivatives. PMID:35013284
Microbial enzymes induce colitis by reactivating triclosan in the mouse gastrointestinal tract. PMID:35013263
Grainyhead 1 acts as a drug-inducible conserved transcriptional regulator linked to insulin signaling and lifespan. PMID:35013237
Topographic mapping of the glioblastoma proteome reveals a triple-axis model of intra-tumoral heterogeneity. PMID:35013227
The catalytic activity of TCPTP is auto-regulated by its intrinsically disordered tail and activated by Integrin alpha-1. PMID:35013194
Altered succinylation of mitochondrial proteins, APP and tau in Alzheimer's disease. PMID:35013160
Time series proteome profile analysis reveals a protective role of citrate synthase in angiotensin II-induced atrial fibrillation. PMID:35013064
Extracellular Vesicles from Pancreatic Cancer Stem Cells Lead an Intratumor Communication Network (EVNet) to fuel tumour progression. PMID:35012996
The interactome of CLUH reveals its association to SPAG5 and its co-translational proximity to mitochondrial proteins. PMID:35012549
Role of Nse1 Subunit of SMC5/6 Complex as a Ubiquitin Ligase. PMID:35011726
Altered Ca2+ Homeostasis in Red Blood Cells of Polycythemia Vera Patients Following Disturbed Organelle Sorting during Terminal Erythropoiesis. PMID:35011611
The Omics Hunt for Novel Molecular Markers of Resistance to Phytophthora infestans. PMID:35009065
Insights into the Structure and Protein Composition of Moorella thermoacetica Spores Formed at Different Temperatures. PMID:35008975
Comparative O-GlcNAc Proteomic Analysis Reveals a Role of O-GlcNAcylated SAM68 in Lung Cancer Aggressiveness. PMID:35008409
Proteomic identification of proliferation and progression markers in human polycythemia vera stem and progenitor cells. PMID:35008095
Interactome Analysis of Human Phospholipase D and Phosphatidic Acid-Associated Protein Network. PMID:35007762
Hyperinflammatory environment drives dysfunctional myeloid cell effector response to bacterial challenge in COVID-19. PMID:35007290
Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling. PMID:35005552
Proteomics Investigations of Potential Protein Biomarkers in Sera of Rabbits Infected With Schistosoma japonicum. PMID:35004354
Comparative Proteomic Profiling Identifies Reciprocal Expression of Mitochondrial Proteins Between White and Gray Matter Lesions From Multiple Sclerosis Brains. PMID:35002930
Calpain-mediated protein targets in cardiac mitochondria following ischemia-reperfusion. PMID:34997008
FASN-dependent de novo lipogenesis is required for brain development. PMID:34996870
Circulating microvesicles and exosomes in small cell lung cancer by quantitative proteomics. PMID:34996345
Off-target inhibition of NGLY1 by the polycaspase inhibitor Z-VAD-fmk induces cellular autophagy. PMID:34995415
Deconstructing Methanosarcina acetivorans into an acetogenic archaeon. PMID:34992140
Protection of the Prodomain α1-Helix Correlates with Latency in the Transforming Growth Factor-β Family. PMID:34990654
The Aquatic Invertebrate Hydra vulgaris Releases Molecular Messages Through Extracellular Vesicles. PMID:34988080
Identification of Antimicrobial Peptides Isolated From the Skin Mucus of African Catfish, Clarias gariepinus (Burchell, 1822). PMID:34987491
The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms. PMID:34986596
Clostridioides difficile Phosphoproteomics Shows an Expansion of Phosphorylated Proteins in Stationary Growth Phase. PMID:34986318
Peroxide Antimalarial Drugs Target Redox Homeostasis in Plasmodium falciparum Infected Red Blood Cells. PMID:34985858
Capillary Electrophoresis Coupled to Electrospray Ionization Tandem Mass Spectrometry for Ultra-Sensitive Proteomic Analysis of Limited Samples. PMID:34983182
A proteomics informed by transcriptomics insight into the proteome of Ornithodoros erraticus adult tick saliva. PMID:34980218
Characterization of Glycosylation-Specific Systemic and Mucosal IgA Antibody Responses to Escherichia coli Mucinase YghJ (SslE). PMID:34975849
Temporal Analysis of Protein Ubiquitylation and Phosphorylation During Parkin-Dependent Mitophagy. PMID:34974192
Sod1 integrates oxygen availability to redox regulate NADPH production and the thiol redoxome. PMID:34969852
Extracellular Vesicles Induce an Aggressive Phenotype in Luminal Breast Cancer Cells Via PKM2 Phosphorylation. PMID:34966685
Identification of HnRNPC as a novel Tau exon 10 splicing factor using RNA antisense purification mass spectrometry. PMID:34965173
Compositional Analysis of Extracellular Aggregates in the Eyes of Patients With Exfoliation Syndrome and Exfoliation Glaucoma. PMID:34964803
Proteomics and Interspecies Interaction Analysis Revealed Abscisic Acid Signalling to Be the Primary Driver for Oil Palm's Response against Red Palm Weevil Infestation. PMID:34961045
Proteomic Analysis Reveals Low-Dose PARP Inhibitor-Induced Differential Protein Expression in BRCA1-Mutated High-Grade Serous Ovarian Cancer Cells. PMID:34958553
Fast and global reorganization of the chloroplast protein biogenesis network during heat acclimation. PMID:34958373
The Conformational State of the BTK Substrate PLCγ Contributes to Ibrutinib Resistance. PMID:34954235
Installation of O-glycan sulfation capacities in human HEK293 cells for display of sulfated mucins. PMID:34954141
Translocation of polyubiquitinated protein substrates by the hexameric Cdc48 ATPase. PMID:34951965
Quantitative proteomics revealed new functions of ALKBH4. PMID:34951099
A high-resolution mass spectrometry based proteomic dataset of human regulatory T cells. PMID:34950757
Imiquimod Boosts Interferon Response, and Decreases ACE2 and Pro-Inflammatory Response of Human Bronchial Epithelium in Asthma. PMID:34950134
SIRT5 Directly Inhibits the PI3K/AKT Pathway in Prostate Cancer Cell Lines. PMID:34949659
Comparative Proteomic Analysis within the Developmental Stages of the Mushroom White Hypsizygus marmoreus. PMID:34947046
Bap-Independent Biofilm Formation in Staphylococcus xylosus. PMID:34946212
Plasma Proteome Signature to Predict the Outcome of Breast Cancer Patients Receiving Neoadjuvant Chemotherapy. PMID:34944885
Inactivity of Peptidase ClpP Causes Primary Accumulation of Mitochondrial Disaggregase ClpX with Its Interacting Nucleoid Proteins, and of mtDNA. PMID:34943861
Aging of Podospora anserina Leads to Alterations of OXPHOS and the Induction of Non-Mitochondrial Salvage Pathways. PMID:34943827
Characterization of a MOB1 Homolog in the Apicomplexan Parasite Toxoplasma gondii. PMID:34943148
A novel C-terminal DxRSDxE motif in ceramide synthases involved in dimer formation. PMID:34942147
APC7 mediates ubiquitin signaling in constitutive heterochromatin in the developing mammalian brain. PMID:34942119
UDP-glucose dehydrogenase expression is upregulated following EMT and differentially affects intracellular glycerophosphocholine and acetylaspartate levels in breast mesenchymal cell lines. PMID:34942055
A longer isoform of Stim1 is a negative SOCE regulator but increases cAMP-modulated NFAT signaling. PMID:34942054
Identification of α1,2-fucosylated signaling and adhesion molecules in head and neck squamous cell carcinoma. PMID:34939118
N-acetyl-β-D-hexosaminidases mediate the generation of paucimannosidic proteins via a putative noncanonical truncation pathway in human neutrophils. PMID:34939086
The butyrophilin 1a1 knockout mouse revisited: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactation. PMID:34938960
Biosafety and Proteome Profiles of Different Heat Inactivation Methods for Mycobacterium tuberculosis. PMID:34937194
Laser capture microdissection-capillary zone electrophoresis-tandem mass spectrometry (LCM-CZE-MS/MS) for spatially resolved top-down proteomics: a pilot study of zebrafish brain. PMID:34935839
Metabolic reprogramming during hyperammonemia targets mitochondrial function and postmitotic senescence. PMID:34935641
Spotted Fever Group Rickettsia Trigger Species-Specific Alterations in Macrophage Proteome Signatures with Different Impacts in Host Innate Inflammatory Responses. PMID:34935429
A specific inhibitor of ALDH1A3 regulates retinoic acid biosynthesis in glioma stem cells. PMID:34934174
A J Domain Protein Functions as a Histone Chaperone to Maintain Genome Integrity and the Response to DNA Damage in a Human Fungal Pathogen. PMID:34933457
Structural architecture of the human NALCN channelosome. PMID:34929720
Characterization of the AGR2 Interactome Uncovers New Players of Protein Disulfide Isomerase Network in Cancer Cells. PMID:34929376
Identification of novel proteins and mechanistic pathways associated with early-onset hypertension by deep proteomic mapping of resistance arteries. PMID:34929167
Type I CRISPR-Cas provides robust immunity but incomplete attenuation of phage-induced cellular stress. PMID:34928385
Exploring the Mechanism of Action of Canmei Formula Against Colorectal Adenoma Through Multi-Omics Technique. PMID:34926462
The HLA Ligandome Comprises a Limited Repertoire of O-GlcNAcylated Antigens Preferentially Associated With HLA-B*07:02. PMID:34925382
Functionality of the human antibody response to Candida albicans. PMID:34923920
Peroxiredoxin 6 protects irradiated cells from oxidative stress and shapes their senescence-associated cytokine landscape. PMID:34923300
Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. PMID:34919428
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline. PMID:34919405
Assessing interference in isobaric tag-based sample multiplexing using an 18-plex interference standard. PMID:34918453
TREM2 interacts with TDP-43 and mediates microglial neuroprotection against TDP-43-related neurodegeneration. PMID:34916658
PA28γ-20S proteasome is a proteolytic complex committed to degrade unfolded proteins. PMID:34913092
Anterior gradient protein 2 is a marker of tumor aggressiveness in breast cancer and favors chemotherapy‑induced senescence escape. PMID:34913074
RNAmetasome network for macromolecule biogenesis in human cells. PMID:34912035
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. PMID:34911965
Chronic treatment with terbutaline increases glucose and oleic acid oxidation and protein synthesis in cultured human myotubes. PMID:34909668
Cognitive profiling and proteomic analysis of the modafinil analogue S-CE-123 in experienced aged rats. PMID:34907284
Convergent use of phosphatidic acid for hepatitis C virus and SARS-CoV-2 replication organelle formation. PMID:34907161
Mutation in protein disulfide isomerase A3 causes neurodevelopmental defects by disturbing endoplasmic reticulum proteostasis. PMID:34904718
Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress. PMID:34904663
Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides. PMID:34904638
Metabolic Reprogramming and Reconstruction: Integration of Experimental and Computational Studies to Set the Path Forward in ADPKD. PMID:34901057
α4/α9 Integrins Coordinate Epithelial Cell Migration Through Local Suppression of MAP Kinase Signaling Pathways. PMID:34900996
Agrobacterium tumefaciens Type IV and Type VI Secretion Systems Reside in Detergent-Resistant Membranes. PMID:34899640
Genotypic, proteomic, and phenotypic approaches to decipher the response to caspofungin and calcineurin inhibitors in clinical isolates of echinocandin-resistant Candida glabrata. PMID:34893830
Acute RyR1 Ca2+ leak enhances NADH-linked mitochondrial respiratory capacity. PMID:34893614
The short isoform of the host antiviral protein ZAP acts as an inhibitor of SARS-CoV-2 programmed ribosomal frameshifting. PMID:34893599
Differential Effects of Insulin-Deficient Diabetes Mellitus on Visceral vs. Subcutaneous Adipose Tissue-Multi-omics Insights From the Munich MIDY Pig Model. PMID:34888323
The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice. PMID:34887460
Changes in the Proteome in the Development of Chronic Human Papillomavirus Infection-A Prospective Study in HIV Positive and HIV Negative Rwandan Women. PMID:34885095
Palm Oil-Rich Diet Affects Murine Liver Proteome and S-Palmitoylome. PMID:34884899
The Secretome of Human Neonatal Mesenchymal Stem Cells Modulates Doxorubicin-Induced Cytotoxicity: Impact in Non-Tumor Cells. PMID:34884877
Fetal Immunomodulatory Environment Following Cartilage Injury-The Key to CARTILAGE Regeneration? PMID:34884768
Proteomic Changes of Activated Hepatic Stellate Cells. PMID:34884585
Anti-SARS-CoV-2 antibodies elicited by COVID-19 mRNA vaccine exhibit a unique glycosylation pattern. PMID:34883043
The Hydrogen-Coupled Oligopeptide Membrane Cotransporter Pept2 is SUMOylated in Kidney Distal Convoluted Tubule Cells. PMID:34881291
Serpinc1 Acts as a Tumor Suppressor in Hepatocellular Carcinoma Through Inducing Apoptosis and Blocking Macrophage Polarization in an Ubiquitin-Proteasome Manner. PMID:34881176
Exercise plasma boosts memory and dampens brain inflammation via clusterin. PMID:34880498
A proteomics study identifying interactors of the FSHD2 gene product SMCHD1 reveals RUVBL1-dependent DUX4 repression. PMID:34880314
GPR180 is a component of TGFβ signalling that promotes thermogenic adipocyte function and mediates the metabolic effects of the adipocyte-secreted factor CTHRC1. PMID:34880217
Bolstering fitness via CO2 fixation and organic carbon uptake: mixotrophs in modern groundwater. PMID:34876683
Plasmin activity promotes amyloid deposition in a transgenic model of human transthyretin amyloidosis. PMID:34876572
Combined Quantitative (Phospho)proteomics and Mass Spectrometry Imaging Reveal Temporal and Spatial Protein Changes in Human Intestinal Ischemia-Reperfusion. PMID:34874173
Maternal serum-derived exosomal lactoferrin as a marker in detecting and predicting ventricular septal defect in fetuses. PMID:34871505
iProX in 2021: connecting proteomics data sharing with big data. PMID:34871441
Development of Methodology to Investigate the Surface SMALPome of Mammalian Cells. PMID:34869600
Epstein-Barr Virus+ B Cells in Breast Cancer Immune Response: A Case Report. PMID:34868006
Simple, Single-Shot Phosphoproteomic Analysis of Heat-Stable Tau Identifies Age-Related Changes in pS235- and pS396-Tau Levels in Non-human Primates. PMID:34867294
Microdissected Pyramidal Cell Proteomics of Alzheimer Brain Reveals Alterations in Creatine Kinase B-Type, 14-3-3-γ, and Heat Shock Cognate 71. PMID:34867272
Multi-modal Profiling of the Extracellular Matrix of Human Fallopian Tubes and Serous Tubal Intraepithelial Carcinomas. PMID:34866441
ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis. PMID:34862403
A validated analysis pipeline for mass spectrometry-based vitreous proteomics: new insights into proliferative diabetic retinopathy. PMID:34861815
FOXN1 forms higher-order nuclear condensates displaced by mutations causing immunodeficiency. PMID:34860543
Automated High-Throughput Method for the Fast, Robust, and Reproducible Enrichment of Newly Synthesized Proteins. PMID:34860524
Thermal Proteome Profiling to Identify Protein-ligand Interactions in the Apicomplexan Parasite Toxoplasma gondii. PMID:34859122
Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens. PMID:34858420
Citrullinated Epitopes Identified on Tumour MHC Class II by Peptide Elution Stimulate Both Regulatory and Th1 Responses and Require Careful Selection for Optimal Anti-Tumour Responses. PMID:34858415
GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors. PMID:34857890
Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks. PMID:34857745
Molecular architecture of the human tRNA ligase complex. PMID:34854379
A distinct complex of PRP19-related and trypanosomatid-specific proteins is required for pre-mRNA splicing in trypanosomes. PMID:34850936
Expression Atlas update: gene and protein expression in multiple species. PMID:34850121
Proteomic profiling of human amnion for preterm birth biomarker discovery. PMID:34848816
Identification of cerebrospinal fluid biomarkers for parkinsonism using a proteomics approach. PMID:34848724
Global mitochondrial protein import proteomics reveal distinct regulation by translation and translocation machinery. PMID:34847359
Determinants of high-density lipoprotein (HDL) functions beyond proteome in Asian Indians: exploring the fatty acid profile of HDL phospholipids. PMID:34843015
tRNA Synthetases Are Recruited to Yeast Ribosomes by rRNA Expansion Segment 7L but Do Not Require Association for Functionality. PMID:34842814
CRYPTOCHROMES promote daily protein homeostasis. PMID:34842284
Biogenesis of hepatitis B virus e antigen is driven by translocon-associated protein complex and regulated by conserved cysteine residues within its signal peptide sequence. PMID:34839586
Targeting conserved N-glycosylation blocks SARS-CoV-2 variant infection in vitro. PMID:34839261
BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma. PMID:34836971
A genetically-encoded crosslinker screen identifies SERBP1 as a PKCε substrate influencing translation and cell division. PMID:34836941
Milk Formula Diet Alters Bacterial and Host Protein Profile in Comparison to Human Milk Diet in Neonatal Piglet Model. PMID:34835974
An Isoform of the Eukaryotic Translation Elongation Factor 1A (eEF1a) Acts as a Pro-Viral Factor Required for Tomato Spotted Wilt Virus Disease in Nicotiana benthamiana. PMID:34834996
Characterization of Biomarkers in Colorectal Cancer Liver Metastases as a Prognostic Tool. PMID:34834411
AC016745.3 Regulates the Transcription of AR Target Genes by Antagonizing NONO. PMID:34833084
Hypoxic Incubation Conditions for Optimized Manufacture of Tenocyte-Based Active Pharmaceutical Ingredients of Homologous Standardized Transplant Products in Tendon Regenerative Medicine. PMID:34831095
PGRMC1 Promotes Progestin-Dependent Proliferation of Breast Cancer Cells by Binding Prohibitins Resulting in Activation of ERα Signaling. PMID:34830790
Quantitative Analysis of the Cardiac Phosphoproteome in Response to Acute β-Adrenergic Receptor Stimulation In Vivo. PMID:34830474
Membrane Vesicles of Pectobacterium as an Effective Protein Secretion System. PMID:34830459
Proteomic Analysis of Marinesco-Sjogren Syndrome Fibroblasts Indicates Pro-Survival Metabolic Adaptation to SIL1 Loss. PMID:34830330
Phosphoproteomic Comparison of Four Eimeria tenella Life Cycle Stages. PMID:34829991
Comparative Analysis of Dental Pulp and Periodontal Stem Cells: Differences in Morphology, Functionality, Osteogenic Differentiation and Proteome. PMID:34829835
Extracellular Vesicles from Fusarium graminearum Contain Protein Effectors Expressed during Infection of Corn. PMID:34829264
Comprehensive Atlas of the Myelin Basic Protein Interaction Landscape. PMID:34827627
Plasma proteomic data in bipolar II disorders and major depressive disorders. PMID:34825021
NUDT2 initiates viral RNA degradation by removal of 5'-phosphates. PMID:34824277
Proteomic analysis identified potential age-associated prognostic biomarkers in pneumonia-derived paediatric sepsis. PMID:34822739
Deciphering the major metabolic pathways associated with aluminum tolerance in popcorn roots using label-free quantitative proteomics. PMID:34821986
Highly flexible metabolism of the marine euglenozoan protist Diplonema papillatum. PMID:34819072
d-Alanine Metabolism via d-Ala Aminotransferase by a Marine Gammaproteobacterium, Pseudoalteromonas sp. Strain CF6-2. PMID:34818098
Nucleoside-Modified mRNA Vaccines Protect IFNAR-/- Mice against Crimean-Congo Hemorrhagic Fever Virus Infection. PMID:34817199
Capacitive interdigitated system of high osteoinductive/conductive performance for personalized acting-sensing implants. PMID:34815414
Fluvastatin mitigates SARS-CoV-2 infection in human lung cells. PMID:34812415
Chromatin enrichment for proteomics in plants (ChEP-P) implicates the histone reader ALFIN-LIKE 6 in jasmonate signalling. PMID:34809577
A Carvacrol-Rich Essential Oil Extracted From Oregano (Origanum vulgare "Hot & Spicy") Exerts Potent Antibacterial Effects Against Staphylococcus aureus. PMID:34803958
Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. PMID:34800366
Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities. PMID:34799561
Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation. PMID:34798055
A scalable, clinically severe pig model for Duchenne muscular dystrophy. PMID:34796900
Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome. PMID:34796338
Acyl carrier protein promotes MukBEF action in Escherichia coli chromosome organization-segregation. PMID:34795302
Phosphorylation activates the yeast small heat shock protein Hsp26 by weakening domain contacts in the oligomer ensemble. PMID:34795272
G3BP1 inhibits Cul3SPOP to amplify AR signaling and promote prostate cancer. PMID:34795264
HPF1 dynamically controls the PARP1/2 balance between initiating and elongating ADP-ribose modifications. PMID:34795260
Mapping protein carboxymethylation sites provides insights into their role in proteostasis and cell proliferation. PMID:34795246
Smooth muscle-specific MMP17 (MT4-MMP) regulates the intestinal stem cell niche and regeneration after damage. PMID:34795242
Proteogenomic discovery of neoantigens facilitates personalized multi-antigen targeted T cell immunotherapy for brain tumors. PMID:34795224
Combined proteomic/transcriptomic signature of recurrence post-liver transplantation for hepatocellular carcinoma beyond Milan. PMID:34794390
Cryo-EM structure of human GPR158 receptor coupled to the RGS7-Gβ5 signaling complex. PMID:34793198
ProteomicsDB: toward a FAIR open-source resource for life-science research. PMID:34791421
Inhibition of bone morphogenetic proteins signaling suppresses metastasis melanoma: a proteomics approach. PMID:34786044
Co-activation of Sonic hedgehog and Wnt signaling in murine retinal precursor cells drives ocular lesions with features of intraocular medulloepithelioma. PMID:34785636
Staphylococcal ClpXP protease targets the cellular antioxidant system to eliminate fitness-compromised cells in stationary phase. PMID:34782466
SARS-CoV-2 nucleocapsid protein interacts with immunoregulators and stress granules and phase separates to form liquid droplets. PMID:34780058
Metabolic resistance to the inhibition of mitochondrial transcription revealed by CRISPR-Cas9 screen. PMID:34779571
Plasma Gradient of Soluble Urokinase-Type Plasminogen Activator Receptor Is Linked to Pathogenic Plasma Proteome and Immune Transcriptome and Stratifies Outcomes in Severe COVID-19. PMID:34777349
The Effect of Allicin on the Proteome of SARS-CoV-2 Infected Calu-3 Cells. PMID:34777295
Proximity-dependent biotinylation detects associations between SARS coronavirus nonstructural protein 1 and stress granule-associated proteins. PMID:34774526
Zinc finger protein ZNF384 is an adaptor of Ku to DNA during classical non-homologous end-joining. PMID:34772923
Individualized Proteogenomics Reveals the Mutational Landscape of Melanoma Patients in Response to Immunotherapy. PMID:34771574
Cancer Tissue Classification Using Supervised Machine Learning Applied to MALDI Mass Spectrometry Imaging. PMID:34771551
Trial Proteomic Qualitative and Quantitative Analysis of the Protein Matrix of Submandibular Sialoliths. PMID:34771131
Novel Translational and Phosphorylation Modification Regulation Mechanisms of Tomato (Solanum lycopersicum) Fruit Ripening Revealed by Integrative Proteomics and Phosphoproteomics. PMID:34769214
Direct and Indirect Effect of TGFβ on Treg Transendothelial Recruitment in HCC Tissue Microenvironment. PMID:34769191
Protein Palmitoylation in Bovine Ovarian Follicle. PMID:34769186
Multi-Omics Approach to Elucidate Cerebrospinal Fluid Changes in Dogs with Intervertebral Disc Herniation. PMID:34769107
A Multi-Perspective Proximity View on the Dynamic Head Region of the Ribosomal 40S Subunit. PMID:34769086
Potential Muscle-Related Biomarkers in Predicting Curve Progression to the Surgical Threshold in Adolescent Idiopathic Scoliosis-A Pilot Proteomic Study Comparing Four Non-Progressive vs. Four Progressive Patients vs. A Control Cohort. PMID:34768447
Prochlorococcus extracellular vesicles: molecular composition and adsorption to diverse microbes. PMID:34766712
Comprehensive quantitative characterization of the human term amnion proteome. PMID:34765964
Venom proteomic analysis of medically important Nigerian viper Echis ocellatus and Bitis arietans snake species. PMID:34765747
Proteome dataset of liver from dairy cows experiencing negative or positive energy balance at early lactation. PMID:34765708
Elucidation of the Translation Initiation Factor Interaction Network of Haloferax volcanii Reveals Coupling of Transcription and Translation in Haloarchaea. PMID:34764944
An integrated workflow for enhanced taxonomic and functional coverage of the mouse fecal metaproteome. PMID:34763597
Proteomic Analysis of Trichomonas vaginalis Phagolysosome, Lysosomal Targeting, and Unconventional Secretion of Cysteine Peptidases. PMID:34763061
Nano-structured myelin: new nanovesicles for targeted delivery to white matter and microglia, from brain-to-brain. PMID:34761196
Venomics of the Enigmatic Andaman Cobra (Naja sagittifera) and the Preclinical Failure of Indian Antivenoms in Andaman and Nicobar Islands. PMID:34759827
Purification of an insect juvenile hormone receptor complex enables insights into its post-translational phosphorylation. PMID:34758356
Genomic expansion of Aldh1a1 protects beavers against high metabolic aldehydes from lipid oxidation. PMID:34758328
The hepatic compensatory response to elevated systemic sulfide promotes diabetes. PMID:34758301
The proteome of developing barley anthers during meiotic prophase I. PMID:34758083
Japanese Encephalitis Virus NS1' Protein Interacts with Host CDK1 Protein to Regulate Antiviral Response. PMID:34756071
Characterising a homozygous two-exon deletion in UQCRH: comparing human and mouse phenotypes. PMID:34750991
Identification and characterization of a noncanonical menaquinone-linked formate dehydrogenase. PMID:34748728
The human telomeric proteome during telomere replication. PMID:34747482
Proteome characterization of the culture supernatant of Mycobacterium bovis in different growth stages. PMID:34746449
The Subcellular Proteome of a Planctomycetes Bacterium Shows That Newly Evolved Proteins Have Distinct Fractionation Patterns. PMID:34745019
Identification of Desmoglein-2 as a novel target of Helicobacter pylori HtrA in epithelial cells. PMID:34742300
Hybridization-proximity labeling reveals spatially ordered interactions of nuclear RNA compartments. PMID:34741808
Quantitative Ubiquitylome Analysis Reveals the Specificity of RNF111/Arkadia E3 Ubiquitin Ligase for its Degradative Substrates SKI and SKIL/SnoN in TGF-β Signaling Pathway. PMID:34740826
β-synuclein potentiates synaptic vesicle dopamine uptake and rescues dopaminergic neurons from MPTP-induced death in the absence of other synucleins. PMID:34736896
Impacts of Ser/Thr Protein Kinase Stk1 on the Proteome, Twitching Motility, and Competitive Advantage in Pseudomonas aeruginosa. PMID:34733256
B cell-derived GABA elicits IL-10+ macrophages to limit anti-tumour immunity. PMID:34732892
Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs. PMID:34732890
Extracellular LGALS3BP regulates neural progenitor position and relates to human cortical complexity. PMID:34728600
Regulating Expression of Mistranslating tRNAs by Readthrough RNA Polymerase II Transcription. PMID:34726901
The nucleoporin Nup50 activates the Ran guanine nucleotide exchange factor RCC1 to promote NPC assembly at the end of mitosis. PMID:34725842
Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis. PMID:34725484
Transcriptomic and proteomic analysis of pyrethroid resistance in the CKR strain of Aedes aegypti. PMID:34723971
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. PMID:34723319
Studies on Novel Diagnostic and Predictive Biomarkers of Intrahepatic Cholestasis of Pregnancy Through Metabolomics and Proteomics. PMID:34721396
Formation and persistence of polyglutamine aggregates in mistranslating cells. PMID:34718744
Quantitative phosphoproteomic analysis reveals chemoresistance-related proteins and signaling pathways induced by rhIL-6 in human osteosarcoma cells. PMID:34717622
Coordination of fungal biofilm development by extracellular vesicle cargo. PMID:34716343
Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture. PMID:34716321
Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chain. PMID:34715012
Single Nucleotide Resolution RNA-Protein Cross-Linking Mass Spectrometry: A Simple Extension of the CLIR-MS Workflow. PMID:34714631
Thioredoxin-mediated alteration of protein content and cytotoxicity of Acinetobacter baumannii outer membrane vesicles. PMID:34713732
Topological Dissection of Proteomic Changes Linked to the Limbic Stage of Alzheimer's Disease. PMID:34712240
The legumain McPAL1 from Momordica cochinchinensis is a highly stable Asx-specific splicing enzyme. PMID:34710371
Molecular characterization of hematopoietic stem cells after in vitro amplification on biomimetic 3D PDMS cell culture scaffolds. PMID:34707135
Proteomic and lipidomic profiling of demyelinating lesions identifies fatty acids as modulators in lesion recovery. PMID:34706241
Tandem Mass Tag-Based Quantitative Proteomics and Virulence Phenotype of Hemolymph-Treated Bacillus thuringiensis kurstaki Cells Reveal New Insights on Bacterial Pathogenesis in Insects. PMID:34704785
RNF43 inhibits WNT5A-driven signaling and suppresses melanoma invasion and resistance to the targeted therapy. PMID:34702444
Identification and drug-induced reversion of molecular signatures of Alzheimer's disease onset and progression in AppNL-G-F, AppNL-F, and 3xTg-AD mouse models. PMID:34702310
Oligomerization-driven MLKL ubiquitylation antagonizes necroptosis. PMID:34698396
A Potential Role of the CD47/SIRPalpha Axis in COVID-19 Pathogenesis. PMID:34698067
PIM1 phosphorylation of the androgen receptor and 14-3-3 ζ regulates gene transcription in prostate cancer. PMID:34697370
Antibiotic-chemoattractants enhance neutrophil clearance of Staphylococcus aureus. PMID:34697316
Exercise prevents fatty liver by modifying the compensatory response of mitochondrial metabolism to excess substrate availability. PMID:34695608
PLCG1 is required for AML1-ETO leukemia stem cell self-renewal. PMID:34695195
RabA2b Overexpression Alters the Plasma-Membrane Proteome and Improves Drought Tolerance in Arabidopsis. PMID:34691115
Allotypic variation in antigen processing controls antigenic peptide generation from SARS-CoV-2 S1 spike glycoprotein. PMID:34688668
The MttB superfamily member MtyB from the human gut symbiont Eubacterium limosum is a cobalamin-dependent γ-butyrobetaine methyltransferase. PMID:34688665
Flexible open conformation of the AP-3 complex explains its role in cargo recruitment at the Golgi. PMID:34688652
The SZT2 Interactome Unravels New Functions of the KICSTOR Complex. PMID:34685691
A Human 3D Cardiomyocyte Risk Model to Study the Cardiotoxic Influence of X-rays and Other Noxae in Adults. PMID:34685588
Iron Oxide Nanoparticles Carrying 5-Fluorouracil in Combination with Magnetic Hyperthermia Induce Thrombogenic Collagen Fibers, Cellular Stress, and Immune Responses in Heterotopic Human Colon Cancer in Mice. PMID:34683917
Mass Spectrometry-Based Proteomics Reveal Alcohol Dehydrogenase 1B as a Blood Biomarker Candidate to Monitor Acetaminophen-Induced Liver Injury. PMID:34681731
Proteomic Landscape of Extracellular Vesicles for Diffuse Large B-Cell Lymphoma Subtyping. PMID:34681663
p53 Forms Redox-Dependent Protein-Protein Interactions through Cysteine 277. PMID:34679713
Progesterone receptor membrane component 1 (PGRMC1) binds and stabilizes cytochromes P450 through a heme-independent mechanism. PMID:34678314
A Conservative Point Mutation in a Dynamic Antigen-binding Loop of Human Immunoglobulin λ6 Light Chain Promotes Pathologic Amyloid Formation. PMID:34678302
Proteomic and Biological Analysis of the Effects of Metformin Senomorphics on the Mesenchymal Stromal Cells. PMID:34676202
GM-CSF Nitration Is a New Driver of Myeloid Suppressor Cell Activity in Tumors. PMID:34675917
Proteomic profile of mesothelial exosomes isolated from peritoneal dialysis effluent of children with focal segmental glomerulosclerosis. PMID:34675284
Light-triggered and phosphorylation-dependent 14-3-3 association with NON-PHOTOTROPIC HYPOCOTYL 3 is required for hypocotyl phototropism. PMID:34675219
Neuronal ribosomes exhibit dynamic and context-dependent exchange of ribosomal proteins. PMID:34675203
Identification of SUMO Targets Associated With the Pluripotent State in Human Stem Cells. PMID:34673284
Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition. PMID:34673281
Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CLpro substrate degradome. PMID:34672947
The Major Peanut Allergen Ara h 2 Produced in Nicotiana benthamiana Contains Hydroxyprolines and Is a Viable Alternative to the E. Coli Product in Allergy Diagnosis. PMID:34671372
Identification of Differential Responses of Goat PBMCs to PPRV Virulence Using a Multi-Omics Approach. PMID:34671358
Proteomic Signatures of Human Visceral and Subcutaneous Adipocytes. PMID:34669916
Streptomyces coelicolor Vesicles: Many Molecules To Be Delivered. PMID:34669446
The proteomic architecture of schizophrenia iPSC-derived cerebral organoids reveals alterations in GWAS and neuronal development factors. PMID:34667143
Palmitoylation targets the calcineurin phosphatase to the phosphatidylinositol 4-kinase complex at the plasma membrane. PMID:34663815
Proteomic analysis of dietary restriction in yeast reveals a role for Hsp26 in replicative lifespan extension. PMID:34661239
Novel Corneal Protein Biomarker Candidates Reveal Iron Metabolic Disturbance in High Myopia Eyes. PMID:34660571
Shotgun Immunoproteomic Approach for the Discovery of Linear B-Cell Epitopes in Biothreat Agents Francisella tularensis and Burkholderia pseudomallei. PMID:34659206
Music of metagenomics-a review of its applications, analysis pipeline, and associated tools. PMID:34657989
A novel phosphoproteomic landscape evoked in response to type I interferon in the brain and in glial cells. PMID:34656141
A Systematic Survey of the Light/Dark-dependent Protein Degradation Events in a Model Cyanobacterium. PMID:34655801
Extracellular vesicle proteomes of two transmissible cancers of Tasmanian devils reveal tenascin-C as a serum-based differential diagnostic biomarker. PMID:34655299
Photoactivatable ribonucleosides mark base-specific RNA-binding sites. PMID:34654832
Sub-centrosomal mapping identifies augmin-γTuRC as part of a centriole-stabilizing scaffold. PMID:34654813
Heading towards a dead end: The role of DND1 in germ line differentiation of human iPSCs. PMID:34653201
Deep representation features from DreamDIAXMBD improve the analysis of data-independent acquisition proteomics. PMID:34650228
Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period. PMID:34648730
The human GID complex engages two independent modules for substrate recruitment. PMID:34647674
Arabidopsis thaliana myosin XIK is recruited to the Golgi through interaction with a MyoB receptor. PMID:34645991
A bacterial membrane sculpting protein with BAR domain-like activity. PMID:34643180
Structural and functional consequences of NEDD8 phosphorylation. PMID:34642328
Myofilament Phosphorylation in Stem Cell Treated Diastolic Heart Failure. PMID:34641704
Modulation of the NOTCH1 Pathway by LUNATIC FRINGE Is Dominant over That of MANIC or RADICAL FRINGE. PMID:34641486
Proteomic Characterization of the Cellular Effects of AhR Activation by Microbial Tryptophan Catabolites in Endotoxin-Activated Human Macrophages. PMID:34639632
C9ORF72 Repeat Expansion Affects the Proteome of Primary Skin Fibroblasts in ALS. PMID:34638725
Arabidopsis LSH8 Positively Regulates ABA Signaling by Changing the Expression Pattern of ABA-Responsive Proteins. PMID:34638657
Mass Spectrometric and Bio-Computational Binding Strength Analysis of Multiply Charged RNAse S Gas-Phase Complexes Obtained by Electrospray Ionization from Varying In-Solution Equilibrium Conditions. PMID:34638522
Palmdelphin Regulates Nuclear Resilience to Mechanical Stress in the Endothelium. PMID:34636652
FGF-2 induces a failure of cell cycle progression in cells harboring amplified K-Ras, revealing new insights into oncogene-induced senescence. PMID:34636387
Clipper: p-value-free FDR control on high-throughput data from two conditions. PMID:34635147
The comprehensive interactomes of human adenosine RNA methyltransferases and demethylases reveal distinct functional and regulatory features. PMID:34634806
Domain Organization of the UBX Domain Containing Protein 9 and Analysis of Its Interactions With the Homohexameric AAA + ATPase p97 (Valosin-Containing Protein). PMID:34631722
Thrombospondin-4 Is a Soluble Dermal Inflammatory Signal That Selectively Promotes Fibroblast Migration and Keratinocyte Proliferation for Skin Regeneration and Wound Healing. PMID:34631719
The regulatory landscape of the human HPF1- and ARH3-dependent ADP-ribosylome. PMID:34625544
Metabolic responsiveness to training depends on insulin sensitivity and protein content of exosomes in insulin-resistant males. PMID:34623918
A possible role of gas-phase electrophoretic mobility molecular analysis (nES GEMMA) in extracellular vesicle research. PMID:34622320
Dataset of single nucleotide polymorphisms and comprehensive proteomic analysis of Streptococcus equi subsp. equi ATCC 39506. PMID:34621931
Strategies for Rapid Identification of Acinetobacter baumannii Membrane Proteins and Polymyxin B's Effects. PMID:34621692
Virulence of Vibrio alginolyticus Accentuates Apoptosis and Immune Rigor in the Oyster Crassostrea hongkongensis. PMID:34621277
Structure and inhibition of Cryptococcus neoformans sterylglucosidase to develop antifungal agents. PMID:34620873
Mitochondrial Impairment by MitoBloCK-6 Inhibits Liver Cancer Cell Proliferation. PMID:34616733
SARS-CoV-2 Coronavirus Spike Protein-Induced Apoptosis, Inflammatory, and Oxidative Stress Responses in THP-1-Like-Macrophages: Potential Role of Angiotensin-Converting Enzyme Inhibitor (Perindopril). PMID:34616396
Early and Late Processes Driving NET Formation, and the Autocrine/Paracrine Role of Endogenous RAGE Ligands. PMID:34616390
Reversible amyloids of pyruvate kinase couple cell metabolism and stress granule disassembly. PMID:34616026
Cargo-specific recruitment in clathrin- and dynamin-independent endocytosis. PMID:34616024
A proteomics sample metadata representation for multiomics integration and big data analysis. PMID:34615866
L-bodies are RNA-protein condensates driving RNA localization in Xenopus oocytes. PMID:34613784
Influenza A H1N1 Induced Disturbance of the Respiratory and Fecal Microbiome of German Landrace Pigs - a Multi-Omics Characterization. PMID:34612695
Temperature Influences the Composition and Cytotoxicity of Extracellular Vesicles in Staphylococcus aureus. PMID:34612674
A dual-function RNA balances carbon uptake and central metabolism in Vibrio cholerae. PMID:34612526
C. elegans feed yolk to their young in a form of primitive lactation. PMID:34611154
Purification of MAP-kinase protein complexes and identification of candidate components by XL-TAP-MS. PMID:34609515
A bioorthogonal chemical reporter for fatty acid synthase-dependent protein acylation. PMID:34606827
Combined Molecular and Elemental Mass Spectrometry Approaches for Absolute Quantification of Proteomes: Application to the Venomics Characterization of the Two Species of Desert Black Cobras, Walterinnesia aegyptia and Walterinnesia morgani. PMID:34606723
CDKL5 kinase controls transcription-coupled responses to DNA damage. PMID:34605059
Phosphoproteomics Provides Novel Insights into the Response of Primary Acute Lymphoblastic Leukemia Cells to Microtubule Depolymerization in G1 Phase of the Cell Cycle. PMID:34604676
Interactome Networks of FOSL1 and FOSL2 in Human Th17 Cells. PMID:34604665
Roles and Cellular Localization of GBP2 and NAB2 During the Blood Stage of Malaria Parasites. PMID:34604117
Time-gated Raman spectroscopy and proteomics analyses of hypoxic and normoxic renal carcinoma extracellular vesicles. PMID:34599227
Spatiotemporal proteomic profiling of the pro-inflammatory response to lipopolysaccharide in the THP-1 human leukaemia cell line. PMID:34599159
Deep-coverage spatiotemporal proteome of the picoeukaryote Ostreococcus tauri reveals differential effects of environmental and endogenous 24-hour rhythms. PMID:34593975
A Novel Spectral Annotation Strategy Streamlines Reporting of Mono-ADP-ribosylated Peptides Derived from Mouse Liver and Spleen in Response to IFN-γ. PMID:34592425
Structural mapping techniques distinguish the surfaces of fibrillar 1N3R and 1N4R human tau. PMID:34592311
A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity. PMID:34591642
Effects of Combinatorial Ubiquitinated Protein-Based Nanovaccine and STING Agonist in Mice With Drug-Resistant and Metastatic Breast Cancer. PMID:34589084
Protein Aggregation Is an Early Manifestation of Phospholamban p.(Arg14del)-Related Cardiomyopathy: Development of PLN-R14del-Related Cardiomyopathy. PMID:34587756
In Vivo Structure-Function Analysis and Redox Interactomes of Leishmania tarentolae Erv. PMID:34585988
Quantitative proteomics reveals the selectivity of ubiquitin-binding autophagy receptors in the turnover of damaged lysosomes by lysophagy. PMID:34585663
Phagocytosis by stroma confounds coculture studies. PMID:34585113
Integrated Stress Response Couples Mitochondrial Protein Translation With Oxidative Stress Control. PMID:34583519
Integrative proteome analysis implicates aberrant RNA splicing in impaired developmental potential of aged mouse oocytes. PMID:34582091
Age-dependent changes in protein incorporation into collagen-rich tissues of mice by in vivo pulsed SILAC labelling. PMID:34581667
Pathway of Hsp70 interactions at the ribosome. PMID:34580293
Approaching In Vivo Models of Pneumococcus-Host Interaction: Insights into Surface Proteins, Capsule Production, and Extracellular Vesicles. PMID:34578131
Synergistic Interactions of Cannabidiol with Chemotherapeutic Drugs in MCF7 Cells: Mode of Interaction and Proteomics Analysis of Mechanisms. PMID:34576262
Early Embryo Exposure to Assisted Reproductive Manipulation Induced Subtle Changes in Liver Epigenetics with No Apparent Negative Health Consequences in Rabbit. PMID:34575877
Analysis of the Putative Nucleoporin POM33 in the Filamentous Fungus Sordaria macrospora. PMID:34575720
Differential Expression of Estrogen-Responsive Genes in Women with Psoriasis. PMID:34575702
Partial-, Double-Enzymatic Dephosphorylation and EndoGluC Hydrolysis as an Original Approach to Enhancing Identification of Casein Phosphopeptides (CPPs) by Mass Spectrometry. PMID:34574245
HMGB1 Protein Interactions in Prostate and Ovary Cancer Models Reveal Links to RNA Processing and Ribosome Biogenesis through NuRD, THOC and Septin Complexes. PMID:34572914
The Emerging Plasticizer Alternative DINCH and Its Metabolite MINCH Induce Oxidative Stress and Enhance Inflammatory Responses in Human THP-1 Macrophages. PMID:34572016
In Planta Transcriptome and Proteome Profiles of Spongospora subterranea in Resistant and Susceptible Host Environments Illuminates Regulatory Principles Underlying Host-Pathogen Interaction. PMID:34571717
A vast pool of lineage-specific microproteins encoded by long non-coding RNAs in plants. PMID:34570232
SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients. PMID:34570216
Circulating extracellular vesicles of patients with steroid-sensitive nephrotic syndrome have higher RAC1 and induce recapitulation of nephrotic syndrome phenotype in podocytes. PMID:34569252
The amino acid substitution affects cellular response to mistranslation. PMID:34568909
An Integrated Approach for the Efficient Extraction and Solubilization of Rice Microsomal Membrane Proteins for High-Throughput Proteomics. PMID:34567038
Characterization by Quantitative Serum Proteomics of Immune-Related Prognostic Biomarkers for COVID-19 Symptomatology. PMID:34566994
Extensive regulation of enzyme activity by phosphorylation in Escherichia coli. PMID:34561442
Multistep mechanism of G-quadruplex resolution during DNA replication. PMID:34559566
Systematic Analysis of the Impact of R-Methylation on RBPs-RNA Interactions: A Proteomic Approach. PMID:34557518
Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria. PMID:34556817
The Drosophila orthologue of the primary ciliary dyskinesia-associated gene, DNAAF3, is required for axonemal dynein assembly. PMID:34553759
Expanding the family of extracellular chaperones: Identification of human plasma proteins with chaperone activity. PMID:34553437
Synthetic VSMCs induce BBB disruption mediated by MYPT1 in ischemic stroke. PMID:34553133
Pan-cancer proteogenomic investigations identify post-transcriptional kinase targets. PMID:34552204
Polymorphic estrogen receptor binding site causes Cd2-dependent sex bias in the susceptibility to autoimmune diseases. PMID:34552089
Three Distinct Proteases Are Responsible for Overall Cell Surface Proteolysis in Streptococcus thermophilus. PMID:34550764
Up-Regulated Salivary Proteins of Brown Marmorated Stink Bug Halyomorpha halys on Plant Growth-Promoting Rhizobacteria-Treated Plants. PMID:34550513
The Human Innate Immune Protein Calprotectin Elicits a Multimetal Starvation Response in Pseudomonas aeruginosa. PMID:34549997
Subcellular proteomics. PMID:34549195
Prenylcysteine oxidase 1, an emerging player in atherosclerosis. PMID:34548610
SWATH-MS for prospective identification of protein blood biomarkers of rtPA-associated intracranial hemorrhage in acute ischemic stroke: a pilot study. PMID:34548538
Characterising proteolysis during SARS-CoV-2 infection identifies viral cleavage sites and cellular targets with therapeutic potential. PMID:34548480
Conformational Changes of RORγ During Response Element Recognition and Coregulator Engagement. PMID:34547329
Impaired mRNA splicing and proteostasis in preadipocytes in obesity-related metabolic disease. PMID:34545810
Multi-level inhibition of coronavirus replication by chemical ER stress. PMID:34545074
AlphaTims: Indexing Trapped Ion Mobility Spectrometry-TOF Data for Fast and Easy Accession and Visualization. PMID:34543758
Proteomic Analysis of Cardiac Adaptation to Exercise by High Resolution Mass Spectrometry. PMID:34540898
Marine dissolved organic matter: a vast and unexplored molecular space. PMID:34536106
Differential Abundance of Brain Mitochondrial Proteins in Yak and Cattle: A Proteomics-Based Study. PMID:34532350
Shotgun-based proteomics of extracellular vesicles in Alzheimer's disease reveals biomarkers involved in immunological and coagulation pathways. PMID:34531462
Activation loop phosphorylation of a non-RD receptor kinase initiates plant innate immune signaling. PMID:34531323
APOBEC3C, a nucleolar protein induced by genotoxins, is excluded from DNA damage sites. PMID:34528388
Multiomic Analyses of Dopaminergic Neurons Isolated from Human Substantia Nigra in Parkinson's Disease: A Descriptive and Exploratory Study. PMID:34528139
Δ133p53β isoform pro-invasive activity is regulated through an aggregation-dependent mechanism in cancer cells. PMID:34526502
Quantitative proteomics identifies PTP1B as modulator of B cell antigen receptor signaling. PMID:34526379
Multiplexed drug-based selection and counterselection genetic manipulations in Drosophila. PMID:34525356
Dynamic reconfiguration of pro-apoptotic BAK on membranes. PMID:34523147
MULocDeep: A deep-learning framework for protein subcellular and suborganellar localization prediction with residue-level interpretation. PMID:34522290
Phosphoproteomic profiling of the hippocampus of offspring rats exposed to prenatal stress. PMID:34520625
Formation of a protein corona on the surface of extracellular vesicles in blood plasma. PMID:34520123
A microenvironment-inspired synthetic three-dimensional model for pancreatic ductal adenocarcinoma organoids. PMID:34518665
The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localization. PMID:34515347
Altered ceramide metabolism is a feature in the extracellular vesicle-mediated spread of alpha-synuclein in Lewy body disorders. PMID:34514546
Discovery of Novel Markers for Identifying Cognitive Decline Using Neuron-Derived Exosomes. PMID:34512304
Immunopeptidogenomics: Harnessing RNA-Seq to Illuminate the Dark Immunopeptidome. PMID:34509645
Expression of CD49f defines subsets of human regulatory T cells with divergent transcriptional landscape and function that correlate with ulcerative colitis disease activity. PMID:34504692
Protein-gene Expression Nexus: Comprehensive characterization of human cancer cell lines with proteogenomic analysis. PMID:34504668
CD38 Deficiency Ameliorates Chronic Graft-Versus-Host Disease Murine Lupus via a B-Cell-Dependent Mechanism. PMID:34504495
Sequences in the cytoplasmic tail of SARS-CoV-2 Spike facilitate expression at the cell surface and syncytia formation. PMID:34504087
Defining the Tumor Microenvironment by Integration of Immunohistochemistry and Extracellular Matrix Targeted Imaging Mass Spectrometry. PMID:34503228
Intra-Tumor Heterogeneity Revealed by Mass Spectrometry Imaging Is Associated with the Prognosis of Breast Cancer. PMID:34503159
Auxin Metabolome Profiling in the Arabidopsis Endoplasmic Reticulum Using an Optimised Organelle Isolation Protocol. PMID:34502279
Comparison of LFQ and IPTL for Protein Identification and Relative Quantification. PMID:34500763
Impact of alanyl-tRNA synthetase editing deficiency in yeast. PMID:34500470
Deamidation drives molecular aging of the SARS-CoV-2 spike protein receptor-binding motif. PMID:34499924
Proteome Analysis of Condensed Barley Mitotic Chromosomes. PMID:34497629
The EDS1-PAD4-ADR1 node mediates Arabidopsis pattern-triggered immunity. PMID:34497423
CSF Chitinase 3-Like 2 Is Associated With Long-term Disability Progression in Patients With Progressive Multiple Sclerosis. PMID:34497102
Construction of à la carte QconCAT protein standards for multiplexed quantification of user-specified target proteins. PMID:34496840
Burkholderia PglL enzymes are Serine preferring oligosaccharyltransferases which target conserved proteins across the Burkholderia genus. PMID:34493791
Tianeptine modulates synaptic vesicle dynamics and favors synaptic mitochondria processes in socially isolated rats. PMID:34493757
Redox proteomic study of Bacillus cereus thiol proteome during fermentative anaerobic growth. PMID:34493209
A systemic cell cycle block impacts stage-specific histone modification profiles during Xenopus embryogenesis. PMID:34491983
A Streamlined Data Analysis Pipeline for the Identification of Sites of Citrullination. PMID:34491035
Metaproteomic Insights Into the Microbial Community in Pozol. PMID:34490328
Protein Targets of Acetaminophen Covalent Binding in Rat and Mouse Liver Studied by LC-MS/MS. PMID:34490218
Linking inherent O-Linked Protein Glycosylation of YghJ to Increased Antigen Potential. PMID:34490144
Effect and Response of Quercus ilex subsp. ballota [Desf.] Samp. Seedlings From Three Contrasting Andalusian Populations to Individual and Combined Phytophthora cinnamomi and Drought Stresses. PMID:34490021
Beyond Self-Resistance: ABCF ATPase LmrC Is a Signal-Transducing Component of an Antibiotic-Driven Signaling Cascade Accelerating the Onset of Lincomycin Biosynthesis. PMID:34488446
Unraveling the relevance of the polyadenylation factor EhCFIm25 in Entamoeba histolytica through proteomic analysis. PMID:34486252
Widespread ribosome stalling in a genome-reduced bacterium and the need for translational quality control. PMID:34485867
Maternal Chronodisruption Throughout Pregnancy Impairs Glucose Homeostasis and Adipose Tissue Physiology in the Male Rat Offspring. PMID:34484111
Absolute quantitative proteomics using the total protein approach to identify novel clinical immunohistochemical markers in renal neoplasms. PMID:34482820
Protease-sensitive regions in amyloid light chains: what a common pattern of fragmentation across organs suggests about aggregation. PMID:34482629
Proteomic traits vary across taxa in a coastal Antarctic phytoplankton bloom. PMID:34482372
Proteomic signatures of myeloid derived suppressor cells from liver and lung metastases reveal functional divergence and potential therapeutic targets. PMID:34482371
A Proteomic Study on the Membrane Protein Fraction of T Cells Confirms High Substrate Selectivity for the ER Translocation Inhibitor Cyclotriazadisulfonamide. PMID:34481949
The miR-193a-5p/NCX2/AKT axis promotes invasion and metastasis of osteosarcoma. PMID:34476004
Automated Phosphopeptide Enrichment for Gram-Positive Bacteria. PMID:34473931
Tissue environment, not ontogeny, defines murine intestinal intraepithelial T lymphocytes. PMID:34473623
Column-based Technology for CD9-HPLC Immunoaffinity Isolation of Serum Extracellular Vesicles. PMID:34473505
CARS senses cysteine deprivation to activate AMPK for cell survival. PMID:34472622
Defining the RBPome of primary T helper cells to elucidate higher-order Roquin-mediated mRNA regulation. PMID:34471108
Liver-Dependent Lung Remodeling during Systemic Inflammation Shapes Responses to Secondary Infection. PMID:34470857
A NSD3-targeted PROTAC suppresses NSD3 and cMyc oncogenic nodes in cancer cells. PMID:34469831
FAN1 controls mismatch repair complex assembly via MLH1 retention to stabilize CAG repeat expansion in Huntington's disease. PMID:34469738
Patient-specific iPSCs carrying an SFTPC mutation reveal the intrinsic alveolar epithelial dysfunction at the inception of interstitial lung disease. PMID:34469722
Polo-like kinase 1 (Plk1) regulates DNA replication origin firing and interacts with Rif1 in Xenopus. PMID:34469577
Rabbit Antidiethoxyphosphotyrosine Antibody, Made by Single B Cell Cloning, Detects Chlorpyrifos Oxon-Modified Proteins in Cultured Cells and Immunopurifies Modified Peptides for Mass Spectrometry. PMID:34469172
Artificial sweeteners stimulate horizontal transfer of extracellular antibiotic resistance genes through natural transformation. PMID:34465899
High levels of TFAM repress mammalian mitochondrial DNA transcription in vivo. PMID:34462320
Proteomic analysis demonstrates the role of the quality control protease LONP1 in mitochondrial protein aggregation. PMID:34461102
Deep Succinylproteomics of Brain Tissues from Intracerebral Hemorrhage with Inhibition of Toll-Like Receptor 4 Signaling. PMID:34460038
Integration of Functional Imaging, Cytometry, and Unbiased Proteomics Reveals New Features of Endothelial-to-Mesenchymal Transition in Ischemic Mitral Valve Regurgitation in Human Patients. PMID:34458332
Quantitative Proteomics and Relative Enzymatic Activities Reveal Different Mechanisms in Two Peanut Cultivars (Arachis hypogaea L.) Under Waterlogging Conditions. PMID:34456956
Identification of Allobaculum mucolyticum as a novel human intestinal mucin degrader. PMID:34455931
Proteome Landscape of Epithelial-to-Mesenchymal Transition (EMT) of Retinal Pigment Epithelium Shares Commonalities With Malignancy-Associated EMT. PMID:34455105
Meta-proteomic analysis of the Shandrin mammoth by EVA technology and high-resolution mass spectrometry: what is its gut microbiota telling us? PMID:34453585
Identification of potential autoantigens in anti-CCP-positive and anti-CCP-negative rheumatoid arthritis using citrulline-specific protein arrays. PMID:34453079
Structure of the phosphoinositide 3-kinase (PI3K) p110γ-p101 complex reveals molecular mechanism of GPCR activation. PMID:34452907
Identification of novel ADAMTS1, ADAMTS4 and ADAMTS5 cleavage sites in versican using a label-free quantitative proteomics approach. PMID:34450332
CSF Proteomic Alzheimer's Disease-Predictive Subtypes in Cognitively Intact Amyloid Negative Individuals. PMID:34449748
Proteomic analysis of machine perfusion solution from brain dead donor kidneys reveals that elevated complement, cytoskeleton and lipid metabolism proteins are associated with 1-year outcome. PMID:34448265
First identification of ITM2B interactome in the human retina. PMID:34446781
Epigenetic inactivation of the autophagy-lysosomal system in appendix in Parkinson's disease. PMID:34446734
Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata. PMID:34446013
The Arabidopsis HY2 Gene Acts as a Positive Regulator of NaCl Signaling during Seed Germination. PMID:34445714
Within-Host Adaptation of Staphylococcus aureus in a Bovine Mastitis Infection Is Associated with Increased Cytotoxicity. PMID:34445550
Differential Retinal Protein Expression in Primary and Secondary Retinal Ganglion Cell Degeneration Identified by Integrated SWATH and Target-Based Proteomics. PMID:34445296
Donkey Milk Fermentation by Lactococcus lactis subsp. cremoris and Lactobacillus rhamnosus Affects the Antiviral and Antibacterial Milk Properties. PMID:34443691
A Novel Approach for the Discovery of Biomarkers of Radiotherapy Response in Breast Cancer. PMID:34442440
Proteomic Analysis of Niemann-Pick Type C Hepatocytes Reveals Potential Therapeutic Targets for Liver Damage. PMID:34440927
Regulation of the HTRA2 Protease Activity by an Inhibitory Antibody-Derived Peptide Ligand and the Influence on HTRA2-Specific Protein Interaction Networks in Retinal Tissues. PMID:34440217
Epithelial Cell Line Derived from Endometriotic Lesion Mimics Macrophage Nervous Mechanism of Pain Generation on Proteome and Metabolome Levels. PMID:34439896
The Fatty Acid and Protein Profiles of Circulating CD81-Positive Small Extracellular Vesicles Are Associated with Disease Stage in Melanoma Patients. PMID:34439311
Network-Based Integration of Multi-Omics Data Identifies the Determinants of miR-491-5p Effects. PMID:34439123
The autoimmune signature of hyperinflammatory multisystem inflammatory syndrome in children. PMID:34437303
Complexome profiling on the Chlamydomonas lpa2 mutant reveals insights into PSII biogenesis and new PSII associated proteins. PMID:34436580
Mycobacterium avium subsp. paratuberculosis Proteome Changes Profoundly in Milk. PMID:34436489
Scaffold-free 3D cell culture of primary skin fibroblasts induces profound changes of the matrisome. PMID:34435183
Editorial: Integration of Multi-Omics Techniques in Cancer. PMID:34434225
T cell receptor recognition of hybrid insulin peptides bound to HLA-DQ8. PMID:34433824
An in vitro vesicle formation assay reveals cargo clients and factors that mediate vesicular trafficking. PMID:34433667
Skin exposure to UVB light induces a skin-brain-gonad axis and sexual behavior. PMID:34433056
The related coactivator complexes SAGA and ATAC control embryonic stem cell self-renewal through acetyltransferase-independent mechanisms. PMID:34433046
Intratumoral injection of caerin 1.1 and 1.9 peptides increases the efficacy of vaccinated TC-1 tumor-bearing mice with PD-1 blockade by modulating macrophage heterogeneity and the activation of CD8+ T cells in the tumor microenvironment. PMID:34429969
The self-peptide repertoire plays a critical role in transplant tolerance induction. PMID:34428180
Comparative Molecular and Immunoregulatory Analysis of Extracellular Vesicles from Candida albicans and Candida auris. PMID:34427507
Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network. PMID:34424903
Matrix-Bound Growth Factors are Released upon Cartilage Compression by an Aggrecan-Dependent Sodium Flux that is Lost in Osteoarthritis. PMID:34423304
Sex-Specific Social Behavior and Amygdala Proteomic Deficits in Foxp2 +/- Mutant Mice. PMID:34421555
Proteomic characterization of secretory granules in dopaminergic neurons indicates chromogranin/secretogranin-mediated protein processing impairment in Parkinson's disease. PMID:34420933
IMProv: A Resource for Cross-link-Driven Structure Modeling that Accommodates Protein Dynamics. PMID:34418567
Bidirectional epithelial-mesenchymal crosstalk provides self-sustaining profibrotic signals in pulmonary fibrosis. PMID:34418430
Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes. PMID:34417450
Adaptive optimization of the OXPHOS assembly line partially compensates lrpprc-dependent mitochondrial translation defects in mice. PMID:34413467
Bacterial translation machinery for deliberate mistranslation of the genetic code. PMID:34413202
A novel NF-κB regulator encoded by circPLCE1 inhibits colorectal carcinoma progression by promoting RPS3 ubiquitin-dependent degradation. PMID:34412652
The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource. PMID:34411258
Comparative phosphoproteomic analysis of tomato genotypes with contrasting cadmium tolerance. PMID:34410462
Proteomic profiling of the oncogenic septin 9 reveals isoform-specific interactions in breast cancer cells. PMID:34409731
Nhp2 is a reader of H2AQ105me and part of a network integrating metabolism with rRNA synthesis. PMID:34409714
Cotranslational prolyl hydroxylation is essential for flavivirus biogenesis. PMID:34408324
Off-the-shelf proximity biotinylation for interaction proteomics. PMID:34408139
Quantifying the phase separation property of chromatin-associated proteins under physiological conditions using an anti-1,6-hexanediol index. PMID:34404448
Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data. PMID:34404349
A unique GCN5 histone acetyltransferase complex controls erythrocyte invasion and virulence in the malaria parasite Plasmodium falciparum. PMID:34403450
Matrix-assisted laser desorption ionization mass spectrometry profiling of plasma exosomes evaluates osteosarcoma metastasis. PMID:34401680
CHIP-dependent regulation of the actin cytoskeleton is linked to neuronal cell membrane integrity. PMID:34401662
Large-scale and high-resolution mass spectrometry-based proteomics profiling defines molecular subtypes of esophageal cancer for therapeutic targeting. PMID:34400640
Structural basis for ALK2/BMPR2 receptor complex signaling through kinase domain oligomerization. PMID:34400635
Ligand-induced native G-quadruplex stabilization impairs transcription initiation. PMID:34400476
Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx. PMID:34400346
pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread. PMID:34398933
BRD9 is a druggable component of interferon-stimulated gene expression and antiviral activity. PMID:34397140
Analysis of circulating protein aggregates as a route of investigation into neurodegenerative disorders. PMID:34396108
CD30-Positive Extracellular Vesicles Enable the Targeting of CD30-Negative DLBCL Cells by the CD30 Antibody-Drug Conjugate Brentuximab Vedotin. PMID:34395429
Plasmodiophora brassicae-Triggered Cell Enlargement and Loss of Cellular Integrity in Root Systems Are Mediated by Pectin Demethylation. PMID:34394168
Identification of COVID-19 prognostic markers and therapeutic targets through meta-analysis and validation of Omics data from nasopharyngeal samples. PMID:34392148
A Universal Peptide Matrix Interactomics Approach to Disclose Motif-Dependent Protein Binding. PMID:34391889
Proteome and functional decline as platelets age in the circulation. PMID:34390534
The conformational stability of pro-apoptotic BAX is dictated by discrete residues of the protein core. PMID:34389733
Neuronal Nsun2 deficiency produces tRNA epitranscriptomic alterations and proteomic shifts impacting synaptic signaling and behavior. PMID:34389722
Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host-Pathogen Complexes. PMID:34389466
Expression of a human cDNA in moss results in spliced mRNAs and fragmentary protein isoforms. PMID:34385580
PERM1 interacts with the MICOS-MIB complex to connect the mitochondria and sarcolemma via ankyrin B. PMID:34385433
Online Nanoflow Two-Dimension Comprehensive Active Modulation Reversed Phase-Reversed Phase Liquid Chromatography High-Resolution Mass Spectrometry for Metaproteomics of Environmental and Microbiome Samples. PMID:34384028
Proteomic analysis of ubiquitination substrates reveals a CTLH E3 ligase complex-dependent regulation of glycolysis. PMID:34383978
Multimodal platform for assessing drug distribution and response in clinical trials. PMID:34383057
Transgenic modeling of Ndr2 gene amplification reveals disturbance of hippocampus circuitry and function. PMID:34381982
Mass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli, and Candida albicans in Blood. PMID:34381737
Gastrobodies are engineered antibody mimetics resilient to pepsin and hydrochloric acid. PMID:34381153
Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19. PMID:34381043
Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells. PMID:34381042
Proteomics informed by transcriptomics for a qualitative and quantitative analysis of the sialoproteome of adult Ornithodoros moubata ticks. PMID:34380568
Hepatitis C virus treatment with direct-acting antivirals induces rapid changes in the hepatic proteome. PMID:34379872
A Multi-omics Longitudinal Study Reveals Alteration of the Leukocyte Activation Pathway in COVID-19 Patients. PMID:34379420
NEK1-mediated retromer trafficking promotes blood-brain barrier integrity by regulating glucose metabolism and RIPK1 activation. PMID:34376696
An alternate covalent form of platelet αIIbβ3 integrin that resides in focal adhesions and has altered function. PMID:34375384
IceR improves proteome coverage and data completeness in global and single-cell proteomics. PMID:34373457
Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2. PMID:34373319
Transcriptome and Proteomic Analysis Reveals Up-Regulation of Innate Immunity-Related Genes Expression in Caprine Herpesvirus 1 Infected Madin Darby Bovine Kidney Cells. PMID:34372499
Optimization of Protein Isolation and Label-Free Quantitative Proteomic Analysis in Four Different Tissues of Korean Ginseng. PMID:34371612
Modern Acinetobacter baumannii clinical isolates replicate inside spacious vacuoles and egress from macrophages. PMID:34370792
Adaptive laboratory evolution of microbial co-cultures for improved metabolite secretion. PMID:34370382
SCFFbxw5 targets kinesin-13 proteins to facilitate ciliogenesis. PMID:34368969
Extensive heterogeneity of glycopeptides in plasma revealed by deep glycoproteomic analysis using size-exclusion chromatography. PMID:34368825
Lipid Body Dynamics in Shoot Meristems: Production, Enlargement, and Putative Organellar Interactions and Plasmodesmal Targeting. PMID:34367200
Exosome-Depleted Excretory-Secretory Products of the Fourth-Stage Larval Angiostrongylus cantonensis Promotes Alternative Activation of Macrophages Through Metabolic Reprogramming by the PI3K-Akt Pathway. PMID:34367145
Blood Plasma Biomarkers for Woody Breast Disease in Commercial Broilers. PMID:34366899
Cellular costs underpin micronutrient limitation in phytoplankton. PMID:34362734
Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. PMID:34360938
Characterization of the Free and Membrane-Associated Fractions of the Thylakoid Lumen Proteome in Arabidopsis thaliana. PMID:34360890
A Proteomic Study Suggests Stress Granules as New Potential Actors in Radiation-Induced Bystander Effects. PMID:34360718
Comparative Proteomic and Metabolomic Analysis of Human Osteoblasts, Differentiated from Dental Pulp Stem Cells, Hinted Crucial Signaling Pathways Promoting Osteogenesis. PMID:34360674
Metabolomic Identification of Anticancer Metabolites of Australian Propolis and Proteomic Elucidation of Its Synergistic Mechanisms with Doxorubicin in the MCF7 Cells. PMID:34360606
Complexome Profiling: Assembly and Remodeling of Protein Complexes. PMID:34360575
Phosphorylation in the Charged Linker Modulates Interactions and Secretion of Hsp90β. PMID:34359868
Mass Spectrometry-Based Proteomic Discovery of Prognostic Biomarkers in Adrenal Cortical Carcinoma. PMID:34359790
Targeted Mass Spectrometry Enables Quantification of Novel Pharmacodynamic Biomarkers of ATM Kinase Inhibition. PMID:34359745
Cloud Computing Based Immunopeptidomics Utilizing Community Curated Variant Libraries Simplifies and Improves Neo-Antigen Discovery in Metastatic Melanoma. PMID:34359654
Genetic depletion of the RNA helicase DDX3 leads to impaired elongation of translating ribosomes triggering co-translational quality control of newly synthesized polypeptides. PMID:34358325
Extracellular Proteome Analysis Shows the Abundance of Histidine Kinase Sensor Protein, DNA Helicase, Putative Lipoprotein Containing Peptidase M75 Domain and Peptidase C39 Domain Protein in Leptospira interrogans Grown in EMJH Medium. PMID:34358002
Antisense Oligonucleotide-Based Therapeutic against Menin for Triple-Negative Breast Cancer Treatment. PMID:34356858
A size-exclusion-based approach for purifying extracellular vesicles from human plasma. PMID:34355211
Yippee like 4 (Ypel4) is essential for normal mouse red blood cell membrane integrity. PMID:34354145
The middle lipin domain adopts a membrane-binding dimeric protein fold. PMID:34354069
Microfluidic device with brain extracellular matrix promotes structural and functional maturation of human brain organoids. PMID:34354063
The biochemical basis of mitochondrial dysfunction in Zellweger Spectrum Disorder. PMID:34351705
A general role for TANGO1, encoded by MIA3, in secretory pathway organization and function. PMID:34350936
Proteomic analysis to identify markers for response to neoadjuvant treatment in esophageal and gastroesophageal cancer. PMID:34350714
Puf6 primes 60S pre-ribosome nuclear export at low temperature. PMID:34349113
The COVIDome Explorer researcher portal. PMID:34348131
Interaction with the CCT chaperonin complex limits APOBEC3A cytidine deaminase cytotoxicity. PMID:34347354
Proteomics and Phosphoproteomics Profiling of Drug-Addicted BRAFi-Resistant Melanoma Cells. PMID:34343000
Species-Specific Endotoxin Stimulus Determines Toll-Like Receptor 4- and Caspase 11-Mediated Pathway Activation Characteristics. PMID:34342534
Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation. PMID:34342529
ppx: Programmatic Access to Proteomics Data Repositories. PMID:34342226
CD209L/L-SIGN and CD209/DC-SIGN Act as Receptors for SARS-CoV-2. PMID:34341769
Salivary proteome of aphthous stomatitis reveals the participation of vitamin metabolism, nutrients, and bacteria. PMID:34341431
Longitudinal stability of urinary extracellular vesicle protein patterns within and between individuals. PMID:34341426
Identification of response signatures for tankyrase inhibitor treatment in tumor cell lines. PMID:34337362
Protein Identification of Spermatozoa and Seminal Plasma in Bottlenose Dolphin (Tursiops truncatus). PMID:34336830
High-throughput drug screening identifies the ATR-CHK1 pathway as a therapeutic vulnerability of CALR mutated hematopoietic cells. PMID:34333533
Quantitative Proteomic and Metabolomic Profiling Reveals Altered Mitochondrial Metabolism and Folate Biosynthesis Pathways in the Aging Drosophila Eye. PMID:34332122
Affinity Proteomics and Deglycoproteomics Uncover Novel EDEM2 Endogenous Substrates and an Integrative ERAD Network. PMID:34332121
Stress-primed secretory autophagy promotes extracellular BDNF maturation by enhancing MMP9 secretion. PMID:34330919
Metabolic control of nitrogen fixation in rhizobium-legume symbioses. PMID:34330708
Response: Commentary: An In Silico-In Vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients. PMID:34326838
Proteomic study of Desulfovibrio ferrophilus IS5 reveals overexpressed extracellular multi-heme cytochrome associated with severe microbiologically influenced corrosion. PMID:34326431
Apolipoprotein A-I modulates HDL particle size in the absence of apolipoprotein A-II. PMID:34324889
Proteomic analysis reveals dexamethasone rescues matrix breakdown but not anabolic dysregulation in a cartilage injury model. PMID:34322675
Stearic acid blunts growth-factor signaling via oleoylation of GNAI proteins. PMID:34321466
The Fish Pathogen Aliivibrio salmonicida LFI1238 Can Degrade and Metabolize Chitin despite Gene Disruption in the Chitinolytic Pathway. PMID:34319813
Toward Comprehensive Plasma Proteomics by Orthogonal Protease Digestion. PMID:34319755
Analysis of pancreatic extracellular matrix protein post-translational modifications via electrostatic repulsion-hydrophilic interaction chromatography coupled with mass spectrometry. PMID:34318855
Phospho-regulated Bim1/EB1 interactions trigger Dam1c ring assembly at the budding yeast outer kinetochore. PMID:34313341
DDASSQ: An open-source, multiple peptide sequencing strategy for label free quantification based on an OpenMS pipeline in the KNIME analytics platform. PMID:34312990
Heterogeneous Expression of Nuclear Encoded Mitochondrial Genes Distinguishes Inhibitory and Excitatory Neurons. PMID:34312306
miR-1 coordinately regulates lysosomal v-ATPase and biogenesis to impact proteotoxicity and muscle function during aging. PMID:34311841
Role of Premycofactocin Synthase in Growth, Microaerophilic Adaptation, and Metabolism of Mycobacterium tuberculosis. PMID:34311585
Deregulation of the Kallikrein Protease Family in the Salivary Glands of the Sjögren's Syndrome ERdj5 Knockout Mouse Model. PMID:34305928
Deacetylation as a receptor-regulated direct activation switch for pannexin channels. PMID:34301959
The bZIP Transcription Factor HapX Is Post-Translationally Regulated to Control Iron Homeostasis in Aspergillus fumigatus. PMID:34299357
Compatibility of Distinct Label-Free Proteomic Workflows in Absolute Quantification of Proteins Linked to the Oocyte Quality in Human Follicular Fluid. PMID:34299044
Calcitriol Promotes Differentiation of Glioma Stem-Like Cells and Increases Their Susceptibility to Temozolomide. PMID:34298790
Tyrosine Phosphoproteomics of Patient-Derived Xenografts Reveals Ephrin Type-B Receptor 4 Tyrosine Kinase as a Therapeutic Target in Pancreatic Cancer. PMID:34298619
The signal transducer CD24 suppresses the germ cell program and promotes an ectodermal rather than mesodermal cell fate in embryonal carcinomas. PMID:34293822
DIA-Based Proteome Profiling of Nasopharyngeal Swabs from COVID-19 Patients. PMID:34292740
Model-guided development of an evolutionarily stable yeast chassis. PMID:34292675
Glycolysis downregulation is a hallmark of HIV-1 latency and sensitizes infected cells to oxidative stress. PMID:34289240
Identification of Actin Filament-Associated Proteins in Giardia lamblia. PMID:34287056
M2aia-Interactive, fast, and memory-efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data. PMID:34282451
MX2-mediated innate immunity against HIV-1 is regulated by serine phosphorylation. PMID:34282309
Specificities of exosome versus small ectosome secretion revealed by live intracellular tracking of CD63 and CD9. PMID:34282141
The Consequences of Soluble Epoxide Hydrolase Deletion on Tumorigenesis and Metastasis in a Mouse Model of Breast Cancer. PMID:34281173
Extensive three-dimensional intratumor proteomic heterogeneity revealed by multiregion sampling in high-grade serous ovarian tumor specimens. PMID:34278265
Oxidative stress induces coordinated remodeling of RNA-enzyme interactions. PMID:34278261
Unraveling Subcellular and Ultrastructural Changes During Vitrification of Human Spermatozoa: Effect of a Mitochondria-Targeted Antioxidant and a Permeable Cryoprotectant. PMID:34277615
Data-Independent Acquisition Proteomics Reveals Long-Term Biomarkers in the Serum of C57BL/6J Mice Following Local High-Dose Heart Irradiation. PMID:34277544
PAD2-mediated citrullination of Fibulin-5 promotes elastogenesis. PMID:34274450
Nemertean, Brachiopod, and Phoronid Neuropeptidomics Reveals Ancestral Spiralian Signaling Systems. PMID:34272863
Long non-coding RNA MIR200CHG promotes breast cancer proliferation, invasion, and drug resistance by interacting with and stabilizing YB-1. PMID:34272387
Biochemical characterization of protease activity of Nsp3 from SARS-CoV-2 and its inhibition by nanobodies. PMID:34270554
Zika virus infection of the placenta alters extracellular matrix proteome. PMID:34264436
Functionally Essential Tubular Proteins Are Lost to Urine-Excreted, Large Extracellular Vesicles during Chronic Renal Insufficiency. PMID:34263177
Quantitative Proteomics Reveal That Metabolic Improvement Contributes to the Cardioprotective Effect of T89 on Isoproterenol-Induced Cardiac Injury. PMID:34262469
Structures of rhodopsin in complex with G-protein-coupled receptor kinase 1. PMID:34262173
SARS-CoV-2 Disrupts Proximal Elements in the JAK-STAT Pathway. PMID:34260266
Mechanistic insights into p53-regulated cytotoxicity of combined entinostat and irinotecan against colorectal cancer cells. PMID:34258881
Evaluation of Protein Purification Techniques and Effects of Storage Duration on LC-MS/MS Analysis of Archived FFPE Human CRC Tissues. PMID:34257588
Sphingolipids mediate polar sorting of PIN2 through phosphoinositide consumption at the trans-Golgi network. PMID:34257291
IL-15 and PIM kinases direct the metabolic programming of intestinal intraepithelial lymphocytes. PMID:34257288
Global kinome profiling reveals DYRK1A as critical activator of the human mitochondrial import machinery. PMID:34257281
DDX21 is a p38-MAPK-sensitive nucleolar protein necessary for mouse preimplantation embryo development and cell-fate specification. PMID:34255976
Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients. PMID:34254058
On the feasibility of deep learning applications using raw mass spectrometry data. PMID:34252933
Antagonism of the mu-delta opioid receptor heterodimer enhances opioid antinociception by activating Src and calcium/calmodulin-dependent protein kinase II signaling. PMID:34252907
Examining Pathways of Iron and Sulfur Acquisition, Trafficking, Deployment, and Storage in Mineral-Grown Methanogen Cells. PMID:34251867
SOD1 is a Possible Predictor of COVID-19 Progression as Revealed by Plasma Proteomics. PMID:34250342
Heat Stress-Dependent Association of Membrane Trafficking Proteins With mRNPs Is Selective. PMID:34249042
Surfaceome and Exoproteome Dynamics in Dual-Species Pseudomonas aeruginosa and Staphylococcus aureus Biofilms. PMID:34248881
Deep learning for peptide identification from metaproteomics datasets. PMID:34246788
An mTORC1-GRASP55 signaling axis controls unconventional secretion to reshape the extracellular proteome upon stress. PMID:34245671
Genetic architecture underlying the expression of eight α-amylase trypsin inhibitors. PMID:34245321
LDIP cooperates with SEIPIN and LDAP to facilitate lipid droplet biogenesis in Arabidopsis. PMID:34244767
Reciprocal interaction between SIRT6 and APC/C regulates genomic stability. PMID:34244565
Arginine methylation promotes siRNA-binding specificity for a spermatogenesis-specific isoform of the Argonaute protein CSR-1. PMID:34244496
LncRNA RCAT1 promotes tumor progression and metastasis via miR-214-5p/E2F2 axis in renal cell carcinoma. PMID:34244473
The GAS6-AXL signaling pathway triggers actin remodeling that drives membrane ruffling, macropinocytosis, and cancer-cell invasion. PMID:34244439
A ciliopathy complex builds distal appendages to initiate ciliogenesis. PMID:34241634
Evaluation of an E. coli Cell Extract Prepared by Lysozyme-Assisted Sonication via Gene Expression, Phage Assembly and Proteomics. PMID:34240805
Predicting the number of sulfur atoms in peptides and small proteins based on the observed aggregated isotope distribution. PMID:34240492
Elastogenesis Correlates With Pigment Production in Murine Aortic Valve Leaflets. PMID:34239903
MaxDIA enables library-based and library-free data-independent acquisition proteomics. PMID:34239088
Niche stiffening compromises hair follicle stem cell potential during ageing by reducing bivalent promoter accessibility. PMID:34239060
Proteomic signatures for perioperative oxygen delivery in skin after major elective surgery: mechanistic sub-study of a randomised controlled trial. PMID:34238546
Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA). PMID:34238254
Global mapping of Salmonella enterica-host protein-protein interactions during infection. PMID:34237247
Software Options for the Analysis of MS-Proteomic Data. PMID:34236654
The chimeric GaaR-XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger. PMID:34236481
Loss of MGA repression mediated by an atypical polycomb complex promotes tumor progression and invasiveness. PMID:34236315
Sox9 Determines Translational Capacity During Early Chondrogenic Differentiation of ATDC5 Cells by Regulating Expression of Ribosome Biogenesis Factors and Ribosomal Proteins. PMID:34235151
BANP opens chromatin and activates CpG-island-regulated genes. PMID:34234345
Evolution of Polymyxin Resistance Regulates Colibactin Production in Escherichia coli. PMID:34232632
Large-Scale Proteomic Assessment of Urinary Extracellular Vesicles Highlights Their Reliability in Reflecting Protein Changes in the Kidney. PMID:34230103
Method development and characterisation of the low-molecular-weight peptidome of human wound fluids. PMID:34227939
FIP200 controls the TBK1 activation threshold at SQSTM1/p62-positive condensates. PMID:34226595
The proteolytic landscape of cells exposed to non-lethal stresses is shaped by executioner caspases. PMID:34226511
High-Efficient Production of Adipose-Derived Stem Cell (ADSC) Secretome Through Maturation Process and Its Non-scarring Wound Healing Applications. PMID:34222219
Histological and proteome analyses of Microbacterium foliorum-mediated decrease in arsenic toxicity in Melastoma malabathricum. PMID:34221807
Mapping Salivary Proteases in Sjögren's Syndrome Patients Reveals Overexpression of Dipeptidyl Peptidase-4/CD26. PMID:34220840
SETD7-mediated monomethylation is enriched on soluble Tau in Alzheimer's disease. PMID:34215303
Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments. PMID:34211188
ATR regulates neuronal activity by modulating presynaptic firing. PMID:34210973
Identification of Nrl1 Domains Responsible for Interactions with RNA-Processing Factors and Regulation of Nrl1 Function by Phosphorylation. PMID:34209806
Rintatolimod Induces Antiviral Activities in Human Pancreatic Cancer Cells: Opening for an Anti-COVID-19 Opportunity in Cancer Patients? PMID:34207861
Differential Exoproteome and Biochemical Characterisation of Neoparamoeba perurans. PMID:34207776
Proteome Profiling of PMJ2-R and Primary Peritoneal Macrophages. PMID:34204832
Old World Vipers-A Review about Snake Venom Proteomics of Viperinae and Their Variations. PMID:34204565
Age-Dependent Hippocampal Proteomics in the APP/PS1 Alzheimer Mouse Model: A Comparative Analysis with Classical SWATH/DIA and directDIA Approaches. PMID:34202490
Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle. PMID:34201234
Differential Glycosite Profiling-A Versatile Method to Compare Membrane Glycoproteomes. PMID:34200965
Inositol Signaling in the Basidiomycete Fungus Schizophyllum commune. PMID:34200898
Spatially Enriched Paralog Rearrangements Argue Functionally Diverse Ribosomes Arise during Cold Acclimation in Arabidopsis. PMID:34200446
Identification of Fucosylated SERPINA1 as a Novel Plasma Marker for Pancreatic Cancer Using Lectin Affinity Capture Coupled with iTRAQ-Based Quantitative Glycoproteomics. PMID:34199928
Evaluation of Collagen Alterations in Early Precursor Lesions of High Grade Serous Ovarian Cancer by Second Harmonic Generation Microscopy and Mass Spectrometry. PMID:34199725
Nucleoside Analogues Are Potent Inducers of Pol V-mediated Mutagenesis. PMID:34198819
Reduced exploratory behavior in neuronal nucleoredoxin knockout mice. PMID:34198070
EXO5-DNA structure and BLM interactions direct DNA resection critical for ATR-dependent replication restart. PMID:34197737
The RNA-Binding Proteins SRP14 and HMGB3 Control HIV-1 Tat mRNA Processing and Translation During HIV-1 Latency. PMID:34194479
Activated interleukin-7 receptor signaling drives B-cell acute lymphoblastic leukemia in mice. PMID:34193976
Genomic and Proteomic Study of Andreprevotia ripae Isolated from an Anthill Reveals an Extensive Repertoire of Chitinolytic Enzymes. PMID:34191517
Increased levels of mitochondrial import factor Mia40 prevent the aggregation of polyQ proteins in the cytosol. PMID:34191328
PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα. PMID:34189442
Constrained G4 structures unveil topology specificity of known and new G4 binding proteins. PMID:34188089
SLX4IP promotes RAP1 SUMOylation by PIAS1 to coordinate telomere maintenance through NF-κB and Notch signaling. PMID:34187905
DOT1L complex regulates transcriptional initiation in human erythroleukemic cells. PMID:34187895
Chemoproteomic Approach toward Probing the Interactomes of Perfluoroalkyl Substances. PMID:34185510
Universal Spectrum Identifier for mass spectra. PMID:34183830
Proximity Tagging Identifies the Glycan-Mediated Glycoprotein Interactors of Galectin-1 in Muscle Stem Cells. PMID:34181849
In-House Packed Porous Graphitic Carbon Columns for Liquid Chromatography-Mass Spectrometry Analysis of N-Glycans. PMID:34178940
p38-MAPK-mediated translation regulation during early blastocyst development is required for primitive endoderm differentiation in mice. PMID:34172827
SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity. PMID:34172724
Large-scale tandem mass spectrum clustering using fast nearest neighbor searching. PMID:34169593
Optimization of a human milk-directed quantitative sIgA ELISA method substantiated by mass spectrometry. PMID:34169348
Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences. PMID:34166401
Infected insect gut reveals differentially expressed proteins for cellular redox, metal resistance and secretion system in Yersinia enterocolitica-Helicoverpa armigera pathogenic model. PMID:34165641
Ultrasensitive single-cell proteomics workflow identifies >1000 protein groups per mammalian cell. PMID:34163866
Design of a Proteolytically Stable Sodium-Calcium Exchanger 1 Activator Peptide for In Vivo Studies. PMID:34163352
Multiomic analysis of the Arabian camel (Camelus dromedarius) kidney reveals a role for cholesterol in water conservation. PMID:34163009
Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment. PMID:34161254
The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, with Its Acetylation Acting as a Localization Toggle. PMID:34156286
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. PMID:34156108
A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiation. PMID:34155239
Systematic detection of functional proteoform groups from bottom-up proteomic datasets. PMID:34155216
Ca2+/calmodulin kinase II-dependent regulation of βIV-spectrin modulates cardiac fibroblast gene expression, proliferation, and contractility. PMID:34153319
Identification of Full-Length Wild-Type and Mutant Huntingtin Interacting Proteins by Crosslinking Immunoprecipitation in Mice Brain Cortex. PMID:34151850
Hepatocyte proteomes reveal the role of protein disulfide isomerase 4 in alpha 1-antitrypsin deficiency. PMID:34151245
New Players in the Interaction Between Beetle Polygalacturonases and Plant Polygalacturonase-Inhibiting Proteins: Insights From Proteomics and Gene Expression Analyses. PMID:34149758
Isolation Method and Characterization of Outer Membranes Vesicles of Helicobacter pylori Grown in a Chemically Defined Medium. PMID:34149641
Proteomics support the threespine stickleback egg coat as a protective oocyte envelope. PMID:34148267
Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds. PMID:34145392
Structural insights into an atypical secretory pathway kinase crucial for Toxoplasma gondii invasion. PMID:34145271
Systematic profiling of protein complex dynamics reveals DNA-PK phosphorylation of IFI16 en route to herpesvirus immunity. PMID:34144993
Platelet-derived growth factor receptor beta activates Abl2 via direct binding and phosphorylation. PMID:34144039
Co-ordinated control of the Aurora B abscission checkpoint by PKCε complex assembly, midbody recruitment and retention. PMID:34143863
Tick extracellular vesicles enable arthropod feeding and promote distinct outcomes of bacterial infection. PMID:34140472
Development of selective protease inhibitors via engineering of the bait region of human α2-macroglobulin. PMID:34139236
A time-resolved proteomic and prognostic map of COVID-19. PMID:34139154
Comprehensive glycoproteomics shines new light on the complexity and extent of glycosylation in archaea. PMID:34138841
Ultrasensitive NanoLC-MS of Subnanogram Protein Samples Using Second Generation Micropillar Array LC Technology with Orbitrap Exploris 480 and FAIMS PRO. PMID:34137250
miR-29a/b1 Regulates the Luteinizing Hormone Secretion and Affects Mouse Ovulation. PMID:34135859
Proteomics and Epidemiological Models of Human Aging. PMID:34135771
Structural basis of GTPase-mediated mitochondrial ribosome biogenesis and recycling. PMID:34135319
Stress granules inhibit fatty acid oxidation by modulating mitochondrial permeability. PMID:34133922
TSSC4 is a component of U5 snRNP that promotes tri-snRNP formation. PMID:34131137
Structure of Tau filaments in Prion protein amyloidoses. PMID:34128081
Jejunal mucosa proteomics unravel metabolic adaptive processes to mild chronic heat stress in dairy cows. PMID:34127774
Exploring antimicrobial resistance to beta-lactams, aminoglycosides and fluoroquinolones in E. coli and K. pneumoniae using proteogenomics. PMID:34127720
IL-13 deficiency exacerbates lung damage and impairs epithelial-derived type 2 molecules during nematode infection. PMID:34127548
RNAseq and quantitative proteomic analysis of Dictyostelium knock-out cells lacking the core autophagy proteins ATG9 and/or ATG16. PMID:34126926
The Termite Fungal Cultivar Termitomyces Combines Diverse Enzymes and Oxidative Reactions for Plant Biomass Conversion. PMID:34126770
Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins. PMID:34125917
smORFer: a modular algorithm to detect small ORFs in prokaryotes. PMID:34125903
Conservative production of galactosaminogalactan in Metarhizium is responsible for appressorium mucilage production and topical infection of insect hosts. PMID:34125872
R1441G but not G2019S mutation enhances LRRK2 mediated Rab10 phosphorylation in human peripheral blood neutrophils. PMID:34125248
Altered Glycosylation in the Aging Heart. PMID:34124155
Papain-Like Cysteine Protease Gene Family in Fig (Ficus carica L.): Genome-Wide Analysis and Expression Patterns. PMID:34122493
Top-Down Proteomics of Human Saliva Highlights Anti-inflammatory, Antioxidant, and Antimicrobial Defense Responses in Alzheimer Disease. PMID:34121996
Revealing the Structural Plasticity of SARS-CoV-2 nsp7 and nsp8 Using Structural Proteomics. PMID:34121407
Schizosaccharomyces pombe Ppr10 and Mpa1 together mediate mitochondrial translational initiation. PMID:34119521
Selective delignification of poplar wood with a newly isolated white-rot basidiomycete Peniophora incarnata T-7 by submerged fermentation to enhance saccharification. PMID:34118970
Talin mechanosensitivity is modulated by a direct interaction with cyclin-dependent kinase-1. PMID:34118235
Assessment of a complete and classified platelet proteome from genome-wide transcripts of human platelets and megakaryocytes covering platelet functions. PMID:34117303
Overexpression of human BAG3P209L in mice causes restrictive cardiomyopathy. PMID:34117258
Aedes aegypti SNAP and a calcium transporter ATPase influence dengue virus dissemination. PMID:34115766
Blocking utilization of major plant biomass polysaccharides leads Aspergillus niger towards utilization of minor components. PMID:34114741
Integrated proteomic and transcriptomic profiling identifies aberrant gene and protein expression in the sarcomere, mitochondrial complex I, and the extracellular matrix in Warmblood horses with myofibrillar myopathy. PMID:34112090
ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation. PMID:34108663
Structural insight on assembly-line catalysis in terpene biosynthesis. PMID:34108468
Site-specific ubiquitylation acts as a regulator of linker histone H1. PMID:34108453
Integrin intra-heterodimer affinity inversely correlates with integrin activatability. PMID:34107244
Multiomic analysis of stretched osteocytes reveals processes and signalling linked to bone regeneration and cancer. PMID:34099736
Quantitative single-cell proteomics as a tool to characterize cellular hierarchies. PMID:34099695
Reprogramming of microRNA expression via E2F1 downregulation promotes Salmonella infection both in infected and bystander cells. PMID:34099666
Kinetics of Abacavir-Induced Remodelling of the Major Histocompatibility Complex Class I Peptide Repertoire. PMID:34093574
Jiedu Tongluo Granules Ameliorates Post-stroke Depression Rat Model via Regulating NMDAR/BDNF Signaling Pathway. PMID:34093193
Proteomic Dissection of the Impact of Environmental Exposures on Mouse Seminal Vesicle Function. PMID:34089863
Mapping of m6A and Its Regulatory Targets in Prostate Cancer Reveals a METTL3-Low Induction of Therapy Resistance. PMID:34088870
Embryonic developmental arrest in the annual killifish Austrolebias charrua: A proteomic approach to diapause III. PMID:34086690
Reciprocal priming between receptor tyrosine kinases at recycling endosomes orchestrates cellular signalling outputs. PMID:34086370
Tengdan Capsule Prevents Hypertensive Kidney Damage in SHR by Inhibiting Periostin-Mediated Renal Fibrosis. PMID:34084130
A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities. PMID:34083602
Kinases as Potential Therapeutic Targets for Anti-coronaviral Therapy. PMID:34081439
Comprehensive Structure-Activity Profiling of Micheliolide and its Targeted Proteome in Leukemia Cells via Probe-Guided Late-Stage C-H Functionalization. PMID:34079900
Tripartite Separation of Glomerular Cell Types and Proteomes from Reporter-Free Mice. PMID:34074698
Age-Related Alterations in the Testicular Proteome of a Non-Human Primate. PMID:34074003
Revisiting Ehrlichia ruminantium Replication Cycle Using Proteomics: The Host and the Bacterium Perspectives. PMID:34073568
Quantitative Proteomic and Microcystin Production Response of Microcystis aeruginosa to Phosphorus Depletion. PMID:34072711
Identification and Relative Quantification of hFSH Glycoforms in Women's Sera via MS-PRM-Based Approach. PMID:34071747
Culture of Mycobacterium smegmatis in Different Carbon Sources to Induce In Vitro Cholesterol Consumption Leads to Alterations in the Host Cells after Infection: A Macrophage Proteomics Analysis. PMID:34071265
Bone Diagenesis in Short Timescales: Insights from an Exploratory Proteomic Analysis. PMID:34071025
Identification of Candidate Protein Biomarkers for CIN2+ Lesions from Self-Sampled, Dried Cervico-Vaginal Fluid Using LC-MS/MS. PMID:34070587
Impacts of the Type I Toxin-Antitoxin System, SprG1/SprF1, on Staphylococcus aureus Gene Expression. PMID:34070083
Cold Atmospheric-Pressure Plasma Caused Protein Damage in Methicillin-Resistant Staphylococcus aureus Cells in Biofilms. PMID:34067642
α-Fodrin in Cytoskeletal Organization and the Activity of Certain Key Microtubule Kinesins. PMID:34067543
Western Diet Induced Remodelling of the Tongue Proteome. PMID:34066295
A Proteomic Approach for Systematic Mapping of Substrates of Human Deubiquitinating Enzymes. PMID:34063716
Protein Kinase C Activation Drives a Differentiation Program in an Oligodendroglial Precursor Model through the Modulation of Specific Biological Networks. PMID:34063504
Host Response of Atlantic Salmon (Salmo salar) Re-Inoculated with Paramoeba perurans. PMID:34062978
Lysine demethylase LSD1 delivered via small extracellular vesicles promotes gastric cancer cell stemness. PMID:34060205
Persistent proteomic changes in glutamatergic and GABAergic signaling in the amygdala of adolescent rats exposed to chlorpyrifos as juveniles. PMID:34058248
Compartmentalized Proteomic Profiling Outlines the Crucial Role of the Classical Secretory Pathway during Recombinant Protein Production in Chinese Hamster Ovary Cells. PMID:34056395
Tubulin Beta 2C Chain (TBB2C), a Potential Marker of Ovarian Cancer, an Insight from Ovarian Cancer Proteome Profile. PMID:34056205
Benefits of Ion Mobility Separation and Parallel Accumulation-Serial Fragmentation Technology on timsTOF Pro for the Needs of Fast Photochemical Oxidation of Protein Analysis. PMID:34056188
Comparative Proteomics Analysis for Elucidating the Interaction Between Host Cells and Toxoplasma gondii. PMID:34055664
Proteomic profiling of murine biliary-derived hepatic organoids and their capacity for drug disposition, bioactivation and detoxification. PMID:34050779
Restoration of energy homeostasis by SIRT6 extends healthy lifespan. PMID:34050173
Automated annotation and visualisation of high-resolution spatial proteomic mass spectrometry imaging data using HIT-MAP. PMID:34050164
Nuclear Phosphatidylinositol 3,4,5-Trisphosphate Interactome Uncovers an Enrichment in Nucleolar Proteins. PMID:34048982
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. PMID:34048576
Large-scale identification of protein histidine methylation in human cells. PMID:34046594
Environmentally relevant concentrations of titanium dioxide nanoparticles pose negligible risk to marine microbes. PMID:34046180
Comparative Analysis of Bursaphelenchus xylophilus Secretome Under Pinus pinaster and P. pinea Stimuli. PMID:34046053
Screening of Key Proteins Affecting Floral Initiation of Saffron Under Cold Stress Using iTRAQ-Based Proteomics. PMID:34046047
Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions. PMID:34046017
A Compendium of Murine (Phospho)Peptides Encompassing Different Isobaric Labeling and Data Acquisition Strategies. PMID:34043369
Component Parts of Bacteriophage Virions Accurately Defined by a Machine-Learning Approach Built on Evolutionary Features. PMID:34042467
Reciprocal Effect of Copper and Iron Regulation on the Proteome of Synechocystis sp. PCC 6803. PMID:34041232
Constitutive Endocytosis of the Neuronal Glutamate Transporter Excitatory Amino Acid Transporter-3 Requires ARFGAP1. PMID:34040545
A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations. PMID:34039272
p97/VCP inhibition causes excessive MRE11-dependent DNA end resection promoting cell killing after ionizing radiation. PMID:34038735
LC-MS/MS analysis of lesional and normally looking psoriatic skin reveals significant changes in protein metabolism and RNA processing. PMID:34038424
Regulation of aquaporin-4 expression in the central nervous system investigated using M23-AQP4 null mouse. PMID:34038017
CLICK-enabled analogues reveal pregnenolone interactomes in cancer and immune cells. PMID:34036248
A predictive model for vertebrate bone identification from collagen using proteomic mass spectrometry. PMID:34035355
Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. PMID:34031387
The dipeptide prolyl-hydroxyproline promotes cellular homeostasis and lamellipodia-driven motility via active β1-integrin in adult tendon cells. PMID:34029590
The antiviral enzyme viperin inhibits cholesterol biosynthesis. PMID:34029588
Proteins interacting with Leishmania major PUF1: A proteomic dataset. PMID:34026959
The Universally Conserved ATPase YchF Regulates Translation of Leaderless mRNA in Response to Stress Conditions. PMID:34026826
Proteome Analysis of PC12 Cells Reveals Alterations in Translation Regulation and Actin Signaling Induced by Clozapine. PMID:34024016
Substrate specificities and reaction kinetics of the yeast oligosaccharyltransferase isoforms. PMID:34023382
Quantitative proteomic comparison of salt stress in Chlamydomonas reinhardtii and the snow alga Chlamydomonas nivalis reveals mechanisms for salt-triggered fatty acid accumulation via reallocation of carbon resources. PMID:34022944
Revealing the Dynamic Allosteric Changes Required for Formation of the Cysteine Synthase Complex by Hydrogen-Deuterium Exchange MS. PMID:34022432
Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology. PMID:34021162
Proteomic Screens for Suppressors of Anoikis Identify IL1RAP as a Promising Surface Target in Ewing Sarcoma. PMID:34021002
Meta-omics Reveal Gallionellaceae and Rhodanobacter Species as Interdependent Key Players for Fe(II) Oxidation and Nitrate Reduction in the Autotrophic Enrichment Culture KS. PMID:34020935
Deciphering the architecture and interactome of hnRNP proteins and enigmRBPs. PMID:34017973
Quantitative Analysis of Tyrosine Phosphorylation from FFPE Tissues Reveals Patient-Specific Signaling Networks. PMID:34016623
The structural heterogeneity of α-synuclein is governed by several distinct subpopulations with interconversion times slower than milliseconds. PMID:34015255
BAD regulates mammary gland morphogenesis by 4E-BP1-mediated control of localized translation in mouse and human models. PMID:34011960
Copy number aberrations drive kinase rewiring, leading to genetic vulnerabilities in cancer. PMID:34010657
Dual roles of HSP70 chaperone HSPA1 in quality control of nascent and newly synthesized proteins. PMID:34010456
CD8+ T cell landscape in Indigenous and non-Indigenous people restricted by influenza mortality-associated HLA-A*24:02 allomorph. PMID:34006841
Repurposing of synaptonemal complex proteins for kinetochores in Kinetoplastida. PMID:34006126
Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells. PMID:34004174
Protein Composition and Associated Material Properties of Cobweb Spiders' Gumfoot Glue Droplets. PMID:34003260
UCP1 governs liver extracellular succinate and inflammatory pathogenesis. PMID:34002097
PRMT6 activates cyclin D1 expression in conjunction with the transcription factor LEF1. PMID:34001852
Defective NET clearance contributes to sustained FXII activation in COVID-19-associated pulmonary thrombo-inflammation. PMID:34000623
Increased Wheat Protein Content via Introgression of an HMW Glutenin Selectively Reshapes the Grain Proteome. PMID:34000434
Cyr61 from adipose-derived stem cells promotes colorectal cancer metastasis and vasculogenic mimicry formation via integrin αV β5. PMID:33999512
Impairment of the ER/mitochondria compartment in human cardiomyocytes with PLN p.Arg14del mutation. PMID:33998164
-------A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS--. PMID:33997298
A 9-kDa matricellular SPARC fragment released by cathepsin D exhibits pro-tumor activity in the triple-negative breast cancer microenvironment. PMID:33995652
TALEN-Based HvMPK3 Knock-Out Attenuates Proteome and Root Hair Phenotypic Responses to flg22 in Barley. PMID:33995462
Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. PMID:33995454
Adipose Triglyceride Lipase Loss Promotes a Metabolic Switch in A549 Non-Small Cell Lung Cancer Cell Spheroids. PMID:33992777
Comparing endocervical mucus proteome of humans and rhesus macaques. PMID:33991406
Multimodality assessment of heart failure with preserved ejection fraction skeletal muscle reveals differences in the machinery of energy fuel metabolism. PMID:33991175
The SARS-CoV-2 RNA interactome. PMID:33989516
Unbiased Label-Free Quantitative Proteomics of Cells Expressing Amyotrophic Lateral Sclerosis (ALS) Mutations in CCNF Reveals Activation of the Apoptosis Pathway: A Workflow to Screen Pathogenic Gene Mutations. PMID:33986643
IFI16 directly senses viral RNA and enhances RIG-I transcription and activation to restrict influenza virus infection. PMID:33986530
Human DICER helicase domain recruits PKR and modulates its antiviral activity. PMID:33984068
Multi-omics analysis of early leaf development in Arabidopsis thaliana. PMID:33982025
NMD inhibition by 5-azacytidine augments presentation of immunogenic frameshift-derived neoepitopes. PMID:33981976
Recruitment of toxin-like proteins with ancestral venom function supports endoparasitic lifestyles of Myxozoa. PMID:33981497
Streptococcus suis Encodes Multiple Allelic Variants of a Phase-Variable Type III DNA Methyltransferase, ModS, That Control Distinct Phasevarions. PMID:33980672
Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype. PMID:33976153
FUT8-mediated aberrant N-glycosylation of B7H3 suppresses the immune response in triple-negative breast cancer. PMID:33976130
Proteomic and Transcriptomic Analysis of Microviridae φX174 Infection Reveals Broad Upregulation of Host Escherichia coli Membrane Damage and Heat Shock Responses. PMID:33975962
The C-Mannosylome of Human Induced Pluripotent Stem Cells Implies a Role for ADAMTS16 C-Mannosylation in Eye Development. PMID:33975020
hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies. PMID:33973408
ARP-T1-associated Bazex-Dupré-Christol syndrome is an inherited basal cell cancer with ciliary defects characteristic of ciliopathies. PMID:33972689
Genoppi is an open-source software for robust and standardized integration of proteomic and genetic data. PMID:33972534
Cardio- and reno-protective effects of dipeptidyl peptidase III in diabetic mice. PMID:33971198
Endolysosomal N-glycan processing is critical to attain the most active form of the enzyme acid alpha-glucosidase. PMID:33971197
Isolation of the Buchnera aphidicola flagellum basal body complexes from the Buchnera membrane. PMID:33970928
Interferon-induced degradation of the persistent hepatitis B virus cccDNA form depends on ISG20. PMID:33969602
Recovery of Depleted miR-146a in ALS Cortical Astrocytes Reverts Cell Aberrancies and Prevents Paracrine Pathogenicity on Microglia and Motor Neurons. PMID:33968923
NSMF promotes the replication stress-induced DNA damage response for genome maintenance. PMID:33963872
Collagen fiber regulation in human pediatric aortic valve development and disease. PMID:33963260
From integrative structural biology to cell biology. PMID:33957123
The Serpin-like Loop Insertion of Ovalbumin Increases the Stability and Decreases the OVA 323-339 Epitope Processing Efficiency. PMID:33956428
Mass Spectral Analysis of Synthetic Peptides: Implications in Proteomics. PMID:33953644
The lncRNA Caren antagonizes heart failure by inactivating DNA damage response and activating mitochondrial biogenesis. PMID:33953175
Mapping Angiotensin II Type 1 Receptor-Biased Signaling Using Proximity Labeling and Proteomics Identifies Diverse Actions of Biased Agonists. PMID:33950683
A Semiautomated Paramagnetic Bead-Based Platform for Isobaric Tag Sample Preparation. PMID:33950666
The Protein Data Bank Archive. PMID:33950382
The iRhom homology domain is indispensable for ADAM17-mediated TNFα and EGF receptor ligand release. PMID:33950315
Proteomics of resistance to Notch1 inhibition in acute lymphoblastic leukemia reveals targetable kinase signatures. PMID:33947863
Structures of a non-ribosomal peptide synthetase condensation domain suggest the basis of substrate selectivity. PMID:33947858
SIK2 orchestrates actin-dependent host response upon Salmonella infection. PMID:33947818
The Zinc Finger Antiviral Protein ZAP Restricts Human Cytomegalovirus and Selectively Binds and Destabilizes Viral UL4/UL5 Transcripts. PMID:33947766
SWATH Based Quantitative Proteomics Reveals Significant Lipid Metabolism in Early Myopic Guinea Pig Retina. PMID:33946922
Immune-Associated Proteins Are Enriched in Lung Tissue-Derived Extracellular Vesicles during Allergen-Induced Eosinophilic Airway Inflammation. PMID:33946872
Quantitative Label-Free Comparison of the Metabolic Protein Fraction in Old and Modern Italian Wheat Genotypes by a Shotgun Approach. PMID:33946829
Protamine Characterization by Top-Down Proteomics: Boosting Proteoform Identification with DBSCAN. PMID:33946530
Macrophage Proteome Analysis at Different Stages of Mycobacterium avium Subspecies paratuberculosis Infection Reveals a Mechanism of Pathogen Dissemination. PMID:33946162
Longitudinal proteomic profiling provides insights into host response and proteome dynamics in COVID-19 progression. PMID:33945677
Integrative analysis reveals unique structural and functional features of the Smc5/6 complex. PMID:33941673
Defining the Caprin-1 Interactome in Unstressed and Stressed Conditions. PMID:33939924
Detecting Protein Communities in Native Cell Extracts by Machine Learning: A Structural Biologist's Perspective. PMID:33937337
Deletion of the ATP2 Gene in Candida albicans Blocks Its Escape From Macrophage Clearance. PMID:33937095
Extracellular vesicles from monocyte/platelet aggregates modulate human atherosclerotic plaque reactivity. PMID:33936566
Hepatic Cytochrome P450 Abundance and Activity in the Developing and Adult Göttingen Minipig: Pivotal Data for PBPK Modeling. PMID:33935788
Proteome impact on maize silks under the priming state induced by Trichoderma root colonization. PMID:33934226
The Cdk8 kinase module regulates interaction of the mediator complex with RNA polymerase II. PMID:33933450
Autocatalytic activation of a malarial egress protease is druggable and requires a protein cofactor. PMID:33932049
Proteogenomic landscape of uterine leiomyomas from hereditary leiomyomatosis and renal cell cancer patients. PMID:33931688
Proteomic analysis of early-stage incompatible and compatible interactions between grapevine and P. viticola. PMID:33931609
FMRP attenuates activity dependent modifications in the mitochondrial proteome. PMID:33931071
Systemic sclerosis biomarkers detection in the secretome of TGFβ1-activated primary human lung fibroblasts. PMID:33930553
TMTpro Complementary Ion Quantification Increases Plexing and Sensitivity for Accurate Multiplexed Proteomics at the MS2 Level. PMID:33929851
Decrypting bacterial polyphenol metabolism in an anoxic wetland soil. PMID:33927199
Chromatin-Directed Proteomics Identifies ZNF84 as a p53-Independent Regulator of p21 in Genotoxic Stress Response. PMID:33925586
Drosophila O-GlcNAcase Mutants Reveal an Expanded Glycoproteome and Novel Growth and Longevity Phenotypes. PMID:33925313
Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii Isolate. PMID:33924830
Out-of-Field Hippocampus from Partial-Body Irradiated Mice Displays Changes in Multi-Omics Profile and Defects in Neurogenesis. PMID:33924260
The Human 2-Cys Peroxiredoxins form Widespread, Cysteine-Dependent- and Isoform-Specific Protein-Protein Interactions. PMID:33923941
Quantitative Proteomics Reveals the Dynamic Regulation of the Tomato Proteome in Response to Phytophthora infestans. PMID:33920680
Mass Spectrometry Imaging as a Tool to Investigate Region Specific Lipid Alterations in Symptomatic Human Carotid Atherosclerotic Plaques. PMID:33919525
Plant Extracellular Vesicles and Nanovesicles: Focus on Secondary Metabolites, Proteins and Lipids with Perspectives on Their Potential and Sources. PMID:33918442
Chronically Elevated Exogenous Glucose Elicits Antipodal Effects on the Proteome Signature of Differentiating Human iPSC-Derived Pancreatic Progenitors. PMID:33918250
Discovery of Post-Translational Modifications in Emiliania huxleyi. PMID:33918234
Investigation of the Initial Host Response of Naïve Atlantic Salmon (Salmo salar) Inoculated with Paramoeba perurans. PMID:33918228
Proteomic Characterization of Bacteriophage Peptides from the Mastitis Producer Staphylococcus aureus by LC-ESI-MS/MS and the Bacteriophage Phylogenomic Analysis. PMID:33917943
Structural characterization of KKT4, an unconventional microtubule-binding kinetochore protein. PMID:33915106
Modeling plasticity and dysplasia of pancreatic ductal organoids derived from human pluripotent stem cells. PMID:33915078
Proteome-Wide Analysis of Heat-Stress in Pinus radiata Somatic Embryos Reveals a Combined Response of Sugar Metabolism and Translational Regulation Mechanisms. PMID:33912202
Carbamazepine Induces Focused T Cell Responses in Resolved Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis Cases But Does Not Perturb the Immunopeptidome for T Cell Recognition. PMID:33912179
Identification of therapeutic targets of the hijacked super-enhancer complex in EVI1-rearranged leukemia. PMID:33911178
PKR activity modulation by phosphomimetic mutations of serine residues located three aminoacids upstream of double-stranded RNA binding motifs. PMID:33911136
Rapid and Accurate Detection of Aminoglycoside-Modifying Enzymes and 16S rRNA Methyltransferases by Targeted Liquid Chromatography-Tandem Mass Spectrometry. PMID:33910961
Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome. PMID:33910018
The final step of 40S ribosomal subunit maturation is controlled by a dual key lock. PMID:33908345
Boosting Detection of Low-Abundance Proteins in Thermal Proteome Profiling Experiments by Addition of an Isobaric Trigger Channel to TMT Multiplexes. PMID:33908254
The dominantly expressed class II molecule from a resistant MHC haplotype presents only a few Marek's disease virus peptides by using an unprecedented binding motif. PMID:33901176
Prednisolone Alters Endometrial Decidual Cells and Affects Decidual-Trophoblast Interactions. PMID:33898438
Proteome Profile of Myelin in the Zebrafish Brain. PMID:33898427
Coelimycin Synthesis Activatory Proteins Are Key Regulators of Specialized Metabolism and Precursor Flux in Streptomyces coelicolor A3(2). PMID:33897632
Proteomic profiling of soft tissue sarcomas with SWATH mass spectrometry. PMID:33895336
SAR insights into TET2 catalytic domain inhibition: Synthesis of 2-Hydroxy-4-Methylene-pentanedicarboxylates. PMID:33894507
Tolerance to nascent protein misfolding stress requires fine-tuning of the cAMP/PKA pathway. PMID:33894203
RNase R is associated in a functional complex with the RhpA DEAD-box RNA helicase in Helicobacter pylori. PMID:33893809
An integrated landscape of protein expression in human cancer. PMID:33893311
Loss of enteric neuronal Ndrg4 promotes colorectal cancer via increased release of Nid1 and Fbln2. PMID:33890711
Comparative Proteomics Reveals the Anaerobic Lifestyle of Meat-Spoiling Pseudomonas Species. PMID:33889149
Pectin Induced Colony Expansion of Soil-Derived Flavobacterium Strains. PMID:33889143
Increased expression of peptides from non-coding genes in cancer proteomics datasets suggests potential tumor neoantigens. PMID:33888849
Smoothened transduces Hedgehog signals via activity-dependent sequestration of PKA catalytic subunits. PMID:33886552
Growth factor profile in calcified cartilage from the metaphysis of a calf costochondral junction, the site of initial bone formation. PMID:33884197
TPL-2 kinase induces phagosome acidification to promote macrophage killing of bacteria. PMID:33881780
Protein expression plasticity contributes to heat and drought tolerance of date palm. PMID:33880635
Optic atrophy-associated TMEM126A is an assembly factor for the ND4-module of mitochondrial complex I. PMID:33879611
An alternative resource allocation strategy in the chemolithoautotrophic archaeon Methanococcus maripaludis. PMID:33879571
AKT/AMPK-mediated phosphorylation of TBC1D4 disrupts the interaction with insulin-regulated aminopeptidase. PMID:33872597
Flash Oxidation (FOX) System: A Novel Laser-Free Fast Photochemical Oxidation Protein Footprinting Platform. PMID:33872496
Quantitative Proteomic Analysis in Alveolar Type II Cells Reveals the Different Capacities of RAS and TGF-β to Induce Epithelial-Mesenchymal Transition. PMID:33869273
Proteomic analysis reveals key proteins involved in ethylene-induced adventitious root development in cucumber (Cucumis sativus L.). PMID:33868797
SAGA and SAGA-like SLIK transcriptional coactivators are structurally and biochemically equivalent. PMID:33864814
PCprophet: a framework for protein complex prediction and differential analysis using proteomic data. PMID:33859439
A genome-wide atlas of co-essential modules assigns function to uncharacterized genes. PMID:33859415
HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy. PMID:33858848
DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. PMID:33857403
GeenaR: A Web Tool for Reproducible MALDI-TOF Analysis. PMID:33854526
Proteomics characterisation of the L929 cell supernatant and its role in BMDM differentiation. PMID:33853969
The deubiquitinase TRABID stabilizes the K29/K48-specific E3 ubiquitin ligase HECTD1. PMID:33853758
Loss of LUC7L2 and U1 snRNP subunits shifts energy metabolism from glycolysis to OXPHOS. PMID:33852893
Triple SILAC identified progestin-independent and dependent PRA and PRB interacting partners in breast cancer. PMID:33846359
Protein kinase A controls the hexosamine pathway by tuning the feedback inhibition of GFAT-1. PMID:33846315
The landscape of molecular chaperones across human tissues reveals a layered architecture of core and variable chaperones. PMID:33846299
Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV. PMID:33845483
Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction. PMID:33845167
Sickle Cell Trait Modulates the Proteome and Phosphoproteome of Plasmodium falciparum-Infected Erythrocytes. PMID:33842387
Dermatopontin as a potential pathogenic factor in endometrial cancer. PMID:33841569
HIV-1 exposure promotes PKG1-mediated phosphorylation and degradation of stathmin to increase epithelial barrier permeability. PMID:33839152
Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity. PMID:33837217
Histone deacetylases control lysine acetylation of ribosomal proteins in rice. PMID:33836077
Centrosome-mediated microtubule remodeling during axon formation in human iPSC-derived neurons. PMID:33835529
Trypanosome KKIP1 Dynamically Links the Inner Kinetochore to a Kinetoplastid Outer Kinetochore Complex. PMID:33834005
Proteomic comparison between different tissue preservation methods for identification of promising biomarkers of urothelial bladder cancer. PMID:33828141
A Superfamily-wide Activity Atlas of Serine Hydrolases in Drosophila melanogaster. PMID:33827210
Insight into the human pathodegradome of the V8 protease from Staphylococcus aureus. PMID:33826899
iTRAQ-based proteome profiling revealed the role of Phytochrome A in regulating primary metabolism in tomato seedling. PMID:33824368
Hypoxia drives murine neutrophil protein scavenging to maintain central carbon metabolism. PMID:33822765
Potential Role of Epithelial Endoplasmic Reticulum Stress and Anterior Gradient Protein 2 Homologue in Crohn's Disease Fibrosis. PMID:33822017
Physiological Responses of Aspergillus niger Challenged with Itraconazole. PMID:33820768
In vivo N-Terminomics Highlights Novel Functions of ADAMTS2 and ADAMTS14 in Skin Collagen Matrix Building. PMID:33816558
Structural and Functional Characterization of Fibronectin in Extracellular Vesicles From Hepatocytes. PMID:33816490
Comprehensive Proteomic Characterization of the Pectoralis Major at Three Chronological Ages in Beijing-You Chicken. PMID:33815156
Targeted Quantification of Detergent-Insoluble RNA-Binding Proteins in Human Brain Reveals Stage and Disease Specific Co-aggregation in Alzheimer's Disease. PMID:33815056
Fabrication, Rheological, and Compositional Characterization of Thermoresponsive Hydrogel from Cornea. PMID:33813860
Structure-activity relationship of ipglycermide binding to phosphoglycerate mutases. PMID:33812994
Integrative Proteomic and Metabolomic Analysis Reveals Metabolic Phenotype in Mice With Cardiac-Specific Deletion of Natriuretic Peptide Receptor A. PMID:33812089
Resourcing, annotating, and analysing synthetic peptides of SARS-CoV-2 for immunopeptidomics and other immunological studies. PMID:33811468
Trastuzumab Modulates the Protein Cargo of Extracellular Vesicles Released by ERBB2+ Breast Cancer Cells. PMID:33809102
Characterization of NADPH Oxidase Expression and Activity in Acute Myeloid Leukemia Cell Lines: A Correlation with the Differentiation Status. PMID:33807114
Persistent Inflammatory Stimulation Drives the Conversion of MSCs to Inflammatory CAFs That Promote Pro-Metastatic Characteristics in Breast Cancer Cells. PMID:33806906
Calendula officinalis Triterpenoid Saponins Impact the Immune Recognition of Proteins in Parasitic Nematodes. PMID:33806494
Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer. PMID:33806447
Site-Specific O-Glycosylation Analysis of SARS-CoV-2 Spike Protein Produced in Insect and Human Cells. PMID:33806155
Corynebacterium diphtheriae Proteome Adaptation to Cell Culture Medium and Serum. PMID:33805816
A Workflow towards the Reproducible Identification and Quantitation of Protein Carbonylation Sites in Human Plasma. PMID:33804523
Ferlins and TgDOC2 in Toxoplasma Microneme, Rhoptry and Dense Granule Secretion. PMID:33803212
Proteomics Data Analysis for the Identification of Proteins and Derived Proteotypic Peptides of Potential Use as Putative Drought Tolerance Markers for Quercus ilex. PMID:33800973
Mast Cell-Derived SAMD14 Is a Novel Regulator of the Human Prostate Tumor Microenvironment. PMID:33799802
Discovery of RSV-Induced BRD4 Protein Interactions Using Native Immunoprecipitation and Parallel Accumulation-Serial Fragmentation (PASEF) Mass Spectrometry. PMID:33799525
Identification of Ku70 Domain-Specific Interactors Using BioID2. PMID:33799447
Iron Deficiency and Recovery in Yeast: A Quantitative Proteomics Approach. PMID:33797912
Combining P and Zn fertilization to enhance yield and grain quality in maize grown on Mediterranean soils. PMID:33795774
A KRAS-responsive long non-coding RNA controls microRNA processing. PMID:33795683
Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects. PMID:33794662
Identification of disease-promoting stromal components by comparative proteomic and transcriptomic profiling of canine mammary tumors using laser-capture microdissected FFPE tissue. PMID:33794398
Protein and Signaling Pathway Responses to rhIL-6 Intervention Before Lobaplatin Treatment in Osteosarcoma Cells. PMID:33791202
Integral Use of Immunopeptidomics and Immunoinformatics for the Characterization of Antigen Presentation and Rational Identification of BoLA-DR-Presented Peptides and Epitopes. PMID:33789985
Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments. PMID:33785742
ADAM10-Mediated Ectodomain Shedding Is an Essential Driver of Podocyte Damage. PMID:33785583
Quantitative acetylome analysis reveals histone modifications that may predict prognosis in hepatitis B-related hepatocellular carcinoma. PMID:33783990
Structural and functional analysis of LIM domain-dependent recruitment of paxillin to αvβ3 integrin-positive focal adhesions. PMID:33782527
Heat-Treatments Affect Protease Activities and Peptide Profiles of Ruminants' Milk. PMID:33777990
EGF Induces Migration Independent of EMT or Invasion in A549 Lung Adenocarcinoma Cells. PMID:33777943
SP3 Protocol for Proteomic Plant Sample Preparation Prior LC-MS/MS. PMID:33777071
The Contact Allergen NiSO4 Triggers a Distinct Molecular Response in Primary Human Dendritic Cells Compared to Bacterial LPS. PMID:33777040
Proteomics characterization of mitochondrial-derived vesicles under oxidative stress. PMID:33769614
Ultra-fast proteomics with Scanning SWATH. PMID:33767396
Comparative proteomic profiling of newly acquired, virulent and attenuated Neoparamoeba perurans proteins associated with amoebic gill disease. PMID:33767232
An updated map of Trypanosoma cruzi histone post-translational modifications. PMID:33767201
Biogeographic venom variation in Russell's viper (Daboia russelii) and the preclinical inefficacy of antivenom therapy in snakebite hotspots. PMID:33764996
PI3Kδ Forms Distinct Multiprotein Complexes at the TCR Signalosome in Naïve and Differentiated CD4+ T Cells. PMID:33763075
Protein cleavage influences surface protein presentation in Mycoplasma pneumoniae. PMID:33762641
Ca2+ signals critical for egress and gametogenesis in malaria parasites depend on a multipass membrane protein that interacts with PKG. PMID:33762339
The COVIDome Explorer Researcher Portal. PMID:33758879
Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product. PMID:33758337
Long-term evolution of the epithelial cell secretome in preclinical 3D models of the human bronchial epithelium. PMID:33758289
Palaeoproteomics confirm earliest domesticated sheep in southern Africa ca. 2000 BP. PMID:33758223
Whole-Genome Transformation Promotes tRNA Anticodon Suppressor Mutations under Stress. PMID:33758086
Integrated Redox Proteomic Analysis Highlights New Mechanisms of Sensitivity to Silver Nanoparticles. PMID:33757833
Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations. PMID:33757590
GMPPA defects cause a neuromuscular disorder with α-dystroglycan hyperglycosylation. PMID:33755596
Mesh Fragmentation Improves Dissociation Efficiency in Top-down Proteomics. PMID:33754701
LncRNA PRADX-mediated recruitment of PRC2/DDX5 complex suppresses UBXN1 expression and activates NF-κB activity, promoting tumorigenesis. PMID:33754075
Assembly of a dsRNA synthesizing complex: RNA-DEPENDENT RNA POLYMERASE 2 contacts the largest subunit of NUCLEAR RNA POLYMERASE IV. PMID:33753485
Human Corneal Epithelial Cells Internalize Aspergillus flavus Spores by Actin-Mediated Endocytosis. PMID:33753415
Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content. PMID:33746922
Global Profiling of the Lysine Crotonylome in Different Pluripotent States. PMID:33746086
MKRN3-mediated ubiquitination of Poly(A)-binding proteins modulates the stability and translation of GNRH1 mRNA in mammalian puberty. PMID:33744966
Glucocorticoid receptor Thr524 phosphorylation by MINK1 induces interactions with 14-3-3 protein regulators. PMID:33744286
Cooperative treatment effectiveness of ATR and HSP90 inhibition in Ewing's sarcoma cells. PMID:33743824
A combinatorial action of GmMYB176 and GmbZIP5 controls isoflavonoid biosynthesis in soybean (Glycine max). PMID:33742087
Red blood cell mannoses as phagocytic ligands mediating both sickle cell anaemia and malaria resistance. PMID:33741926
Exposure to 1-Butanol Exemplifies the Response of the Thermoacidophilic Archaeon Sulfolobus acidocaldarius to Solvent Stress. PMID:33741627
Influence of Proteome Profiles and Intracellular Drug Exposure on Differences in CYP Activity in Donor-Matched Human Liver Microsomes and Hepatocytes. PMID:33739838
Cell Surface Processing of CD109 by Meprin β Leads to the Release of Soluble Fragments and Reduced Expression on Extracellular Vesicles. PMID:33738281
Global miRNA/proteomic analyses identify miRNAs at 14q32 and 3p21, which contribute to features of chronic iron-exposed fallopian tube epithelial cells. PMID:33737539
MARCKS affects cell motility and response to BTK inhibitors in CLL. PMID:33735912
Proteomic identification of the UDP-GlcNAc: PI α1-6 GlcNAc-transferase subunits of the glycosylphosphatidylinositol biosynthetic pathway of Trypanosoma brucei. PMID:33735232
Sex-Related Differences in Protein Expression in Sarcomere Mutation-Positive Hypertrophic Cardiomyopathy. PMID:33732734
α-Catenin levels determine direction of YAP/TAZ response to autophagy perturbation. PMID:33731717
Staphylococcus aureus Responds to Physiologically Relevant Temperature Changes by Altering Its Global Transcript and Protein Profile. PMID:33731473
LMTK3 inhibition affects microtubule stability. PMID:33731143
Excision of mutagenic replication-blocking lesions suppresses cancer but promotes cytotoxicity and lethality in nitrosamine-exposed mice. PMID:33730582
MANTI: Automated Annotation of Protein N-Termini for Rapid Interpretation of N-Terminome Data Sets. PMID:33729755
Data-independent acquisition-based proteome and phosphoproteome profiling across six melanoma cell lines reveals determinants of proteotypes. PMID:33728422
Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen. PMID:33727531
Dysregulation of Principal Cell miRNAs Facilitates Epigenetic Regulation of AQP2 and Results in Nephrogenic Diabetes Insipidus. PMID:33727367
SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription. PMID:33722288
Estimating the number of protein molecules in a plant cell: protein and amino acid homeostasis during drought. PMID:33721903
RNF111-facilitated neddylation potentiates cGAS-mediated antiviral innate immune response. PMID:33720974
The velvet protein Vel1 controls initial plant root colonization and conidia formation for xylem distribution in Verticillium wilt. PMID:33720931
Faecal proteomics as a novel method to study mammalian behaviour and physiology. PMID:33720532
Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast. PMID:33720010
Extracellular Vesicles Derived From Adult and Fetal Bone Marrow Mesenchymal Stromal Cells Differentially Promote ex vivo Expansion of Hematopoietic Stem and Progenitor Cells. PMID:33718342
ABPP-HT - High-Throughput Activity-Based Profiling of Deubiquitylating Enzyme Inhibitors in a Cellular Context. PMID:33718328
Proteomic profiling of commercial dust mite skin prick test solutions and allergy vaccines from India. PMID:33717396
Dietary Inclusion of Black Soldier Fly (Hermetia Illucens) Larvae Meal and Paste Improved Gut Health but Had Minor Effects on Skin Mucus Proteome and Immune Response in Atlantic Salmon (Salmo Salar). PMID:33717079
Quantitative Proteomics Reveals that the OGT Interactome Is Remodeled in Response to Oxidative Stress. PMID:33716169
Possible role of small secreted peptides (SSPs) in immune signaling in bryophytes. PMID:33713297
Loss-of-function mutations in the histone methyltransferase EZH2 promote chemotherapy resistance in AML. PMID:33712646
An ARF GTPase module promoting invasion and metastasis through regulating phosphoinositide metabolism. PMID:33712589
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. PMID:33711481
The GORKY glycoalkaloid transporter is indispensable for preventing tomato bitterness. PMID:33707737
SIRT3 consolidates heterochromatin and counteracts senescence. PMID:33706382
Maternal Iron Deficiency Modulates Placental Transcriptome and Proteome in Mid-Gestation of Mouse Pregnancy. PMID:33693820
Human METTL18 is a histidine-specific methyltransferase that targets RPL3 and affects ribosome biogenesis and function. PMID:33693809
Personalized Profiling Reveals Donor- and Lactation-Specific Trends in the Human Milk Proteome and Peptidome. PMID:33693758
Multiple unbiased approaches identify oxidosqualene cyclase as the molecular target of a promising anti-leishmanial. PMID:33691122
Qualitative and Quantitative Shotgun Proteomics Data Analysis from Data-Dependent Acquisition Mass Spectrometry. PMID:33687723
Target protein deglycosylation in living cells by a nanobody-fused split O-GlcNAcase. PMID:33686291
riboCIRC: a comprehensive database of translatable circRNAs. PMID:33685493
Identification of permissive amber suppression sites for efficient non-canonical amino acid incorporation in mammalian cells. PMID:33684219
Aggressiveness and Metastatic Potential of Breast Cancer Cells Co-Cultured with Preadipocytes and Exposed to an Environmental Pollutant Dioxin: An in Vitro and in Vivo Zebrafish Study. PMID:33683140
Human Bone Proteomes before and after Decomposition: Investigating the Effects of Biological Variation and Taphonomic Alteration on Bone Protein Profiles and the Implications for Forensic Proteomics. PMID:33683123
HDAC Inhibition Reverses Preexisting Diastolic Dysfunction and Blocks Covert Extracellular Matrix Remodeling. PMID:33682427
Evidences for a Nutritional Role of Iodine in Plants. PMID:33679830
Tolerogenic Effect Elicited by Protein Fraction Derived From Different Formulas for Dietary Treatment of Cow's Milk Allergy in Human Cells. PMID:33679694
Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. PMID:33677602
Nucleolin acts as the receptor for C1QTNF4 and supports C1QTNF4-mediated innate immunity modulation. PMID:33676896
The phosphorylation of the Smad2/3 linker region by nemo-like kinase regulates TGF-β signaling. PMID:33676893
A long isoform of GIV/Girdin contains a PDZ-binding module that regulates localization and G-protein binding. PMID:33675748
Comparison of plasma and cerebrospinal fluid proteomes identifies gene products guiding adult neurogenesis and neural differentiation in birds. PMID:33674647
Proteomic Analysis of Low-Grade, Early-Stage Endometrial Carcinoma Reveals New Dysregulated Pathways Associated with Cell Death and Cell Signaling. PMID:33672863
IQGAP1 Is a Scaffold of the Core Proteins of the Hippo Pathway and Negatively Regulates the Pro-Apoptotic Signal Mediated by This Pathway. PMID:33672268
Mycobacterium tuberculosis Small RNA MTS1338 Confers Pathogenic Properties to Non-Pathogenic Mycobacterium smegmatis. PMID:33671144
Mass Spectrometry-Based Redox and Protein Profiling of Failing Human Hearts. PMID:33670142
Major Determinants of Airway Epithelial Cell Sensitivity to S. aureus Alpha-Toxin: Disposal of Toxin Heptamers by Extracellular Vesicle Formation and Lysosomal Degradation. PMID:33668237
Characterization of 150 Wheat Cultivars by LC-MS-Based Label-Free Quantitative Proteomics Unravels Possibilities to Design Wheat Better for Baking Quality and Human Health. PMID:33668233
Potential Neuroprotective Mechanisms of Methamphetamine Treatment in Traumatic Brain Injury Defined by Large-Scale IonStar-Based Quantitative Proteomics. PMID:33668155
Regulation of the endocytosis and prion-chaperoning machineries by yeast E3 ubiquitin ligase Rsp5 as revealed by orthogonal ubiquitin transfer. PMID:33667410
A comprehensive dataset of the extra virgin olive oil (EVOO) proteome. PMID:33665245
Neuropathy-causing TRPV4 mutations disrupt TRPV4-RhoA interactions and impair neurite extension. PMID:33664271
Triqler for MaxQuant: Enhancing Results from MaxQuant by Bayesian Error Propagation and Integration. PMID:33661646
Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors. PMID:33661099
Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA. PMID:33660784
Allergenicity assessment of Delonix regia pollen grain and identification of allergens by immunoproteomic approach. PMID:33659721
RawBeans: A Simple, Vendor-Independent, Raw-Data Quality-Control Tool. PMID:33657803
In Stallion Spermatozoa, Superoxide Dismutase (Cu-Zn) (SOD1) and the Aldo-Keto-Reductase Family 1 Member b (AKR1B1) Are the Proteins Most Significantly Reduced by Cryopreservation. PMID:33656888
OXPHOS deficiency activates global adaptation pathways to maintain mitochondrial membrane potential. PMID:33655635
The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation. PMID:33655243
Capillary Zone Electrophoresis-Tandem Mass Spectrometry As an Alternative to Liquid Chromatography-Tandem Mass Spectrometry for Top-down Proteomics of Histones. PMID:33650845
Sec24C is an HIV-1 host dependency factor crucial for virus replication. PMID:33649557
Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom. PMID:33649555
Evidence for the Mycobacterial Mce4 Transporter Being a Multiprotein Complex. PMID:33649150
Oryza sativa cv. Nipponbare and Oryza barthii as Unexpected Tolerance and Susceptibility Sources Against Schizotetranychus oryzae (Acari: Tetranychidae) Mite Infestation. PMID:33643348
Mitochondrial Small Heat Shock Proteins Are Essential for Normal Growth of Arabidopsis thaliana. PMID:33643342
Stable Isotope Labeling of Amino Acids in Flies (SILAF) Reveals Differential Phosphorylation of Mitochondrial Proteins Upon Loss of OXPHOS Subunits. PMID:33640490
A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair. PMID:33637760
The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis. PMID:33637717
mTORC1 activity is supported by spatial association with focal adhesions. PMID:33635313
BRCA2 promotes DNA-RNA hybrid resolution by DDX5 helicase at DNA breaks to facilitate their repair‡. PMID:33634895
Transcriptional and Proteomic Characterization of Telomere-Induced Senescence in a Human Alveolar Epithelial Cell Line. PMID:33634147
A methodology for carbamate post-translational modification discovery and its application in Escherichia coli. PMID:33633830
An aspartyl protease-mediated cleavage regulates structure and function of a flavodoxin-like protein and aids oxidative stress survival. PMID:33630938
Categorization of Phosphorylation Site Behavior during the Diauxic Shift in Saccharomyces cerevisiae. PMID:33630598
Formation and characterization of biofilms formed by salt-tolerant yeast strains in seawater-based growth medium. PMID:33630153
A multifaceted analysis reveals two distinct phases of chloroplast biogenesis during de-etiolation in Arabidopsis. PMID:33629953
Comparative Cell Surface Proteomic Analysis of the Primary Human T Cell and Monocyte Responses to Type I Interferon. PMID:33628210
Sulfur sequestration promotes multicellularity during nutrient limitation. PMID:33627869
Interaction of 7SK with the Smn complex modulates snRNP production. PMID:33627647
TET2 is a component of the estrogen receptor complex and controls 5mC to 5hmC conversion at estrogen receptor cis-regulatory regions. PMID:33626359
The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection. PMID:33623002
Intracellular pathways for lignin catabolism in white-rot fungi. PMID:33622792
The spatial network of skeletal proteins in a stony coral. PMID:33622149
A meet-up of two second messengers: the c-di-AMP receptor DarB controls (p)ppGpp synthesis in Bacillus subtilis. PMID:33619274
Therapeutic Assessment of Targeting ASNS Combined with l-Asparaginase Treatment in Solid Tumors and Investigation of Resistance Mechanisms. PMID:33615182
A New Family of Bacteriolytic Proteins in Dictyostelium discoideum. PMID:33614529
Proteomic profile of melanoma cell-derived small extracellular vesicles in patients' plasma: a potential correlate of melanoma progression. PMID:33613873
A Multi-OMICs Approach Sheds Light on the Higher Yield Phenotype and Enhanced Abiotic Stress Tolerance in Tobacco Lines Expressing the Carrot lycopene β-cyclase1 Gene. PMID:33613605
Light Regulates the Cytokinin-Dependent Cold Stress Responses in Arabidopsis. PMID:33613584
Bacterial ClpP Protease Is a Potential Target for Methyl Gallate. PMID:33613462
Deep learning the collisional cross sections of the peptide universe from a million experimental values. PMID:33608539
20S proteasomes secreted by the malaria parasite promote its growth. PMID:33608523
The one-carbon pool controls mitochondrial energy metabolism via complex I and iron-sulfur clusters. PMID:33608280
SUGAR-seq enables simultaneous detection of glycans, epitopes, and the transcriptome in single cells. PMID:33608275
Phloem Sap Proteins Are Part of a Core Stress Responsive Proteome Involved in Drought Stress Adjustment. PMID:33603764
CSF proteome in multiple sclerosis subtypes related to brain lesion transcriptomes. PMID:33603109
Discovery and validation of FBLN1 and ANT3 as potential biomarkers for early detection of cervical cancer. PMID:33602229
Loss of α-actinin-3 during human evolution provides superior cold resilience and muscle heat generation. PMID:33600773
Comprehensive Succinylome Profiling Reveals the Pivotal Role of Lysine Succinylation in Energy Metabolism and Quorum Sensing of Staphylococcus epidermidis. PMID:33597936
The ER protein Ema19 facilitates the degradation of nonimported mitochondrial precursor proteins. PMID:33596095
Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees. PMID:33593413
CIITA-Transduced Glioblastoma Cells Uncover a Rich Repertoire of Clinically Relevant Tumor-Associated HLA-II Antigens. PMID:33592498
Nucleotide sugar biosynthesis occurs in the glycosomes of procyclic and bloodstream form Trypanosoma brucei. PMID:33592041
Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway. PMID:33591270
Identification of novel lipid droplet factors that regulate lipophagy and cholesterol efflux in macrophage foam cells. PMID:33590792
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. PMID:33589928
Proteome-wide and matrisome-specific alterations during human pancreas development and maturation. PMID:33589611
Characterization of the novel mitochondrial genome segregation factor TAP110 in Trypanosoma brucei. PMID:33589495
Physiological and proteomic profiles of Trypanosoma brucei rhodesiense parasite isolated from suramin responsive and non-responsive HAT patients in Busoga, Uganda. PMID:33588295
Large-scale identification of ubiquitination sites on membrane-associated proteins in Arabidopsis thaliana seedlings. PMID:33585938
Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides. PMID:33585414
Rapid Degradation Pathways of Host Proteins During HCMV Infection Revealed by Quantitative Proteomics. PMID:33585265
Integrated Glycoproteomics Identifies a Role of N-Glycosylation and Galectin-1 on Myogenesis and Muscle Development. PMID:33583770
Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling. PMID:33582301
N-Glycomic Signature of Stage II Colorectal Cancer and Its Association With the Tumor Microenvironment. PMID:33581319
Selenium-dependent metabolic reprogramming during inflammation and resolution. PMID:33581115
PRMT5 inhibition disrupts splicing and stemness in glioblastoma. PMID:33579912
Identification of new proteins related with cisplatin resistance in Saccharomyces cerevisiae. PMID:33576883
The UBA domain of conjugating enzyme Ubc1/Ube2K facilitates assembly of K48/K63-branched ubiquitin chains. PMID:33576509
Novel Insights into Quantitative Proteomics from an Innovative Bottom-Up Simple Light Isotope Metabolic (bSLIM) Labeling Data Processing Strategy. PMID:33573382
Label-Free Quantitative Phosphoproteomics of the Fission Yeast Schizosaccharomyces pombe Using Strong Anion Exchange- and Porous Graphitic Carbon-Based Fractionation Strategies. PMID:33572424
Global mapping of protein-metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. PMID:33568709
USP11 mediates repair of DNA-protein cross-links by deubiquitinating SPRTN metalloprotease. PMID:33567341
TRIM67 regulates exocytic mode and neuronal morphogenesis via SNAP47. PMID:33567284
Major antigen and paramyosin proteins as candidate biomarkers for serodiagnosis of canine infection by zoonotic Onchocerca lupi. PMID:33566799
Sperm proteins and cancer-testis antigens are released by the seminiferous tubules in mice and men. PMID:33565176
The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes. PMID:33563959
A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions. PMID:33563827
Simplified and Unified Access to Cancer Proteogenomic Data. PMID:33560848
Cross-linking mass spectrometry uncovers protein interactions and functional assemblies in synaptic vesicle membranes. PMID:33558502
SPRTN protease-cleaved MRE11 decreases DNA repair and radiosensitises cancer cells. PMID:33558481
Proteo-Genomic Analysis of SARS-CoV-2: A Clinical Landscape of Single-Nucleotide Polymorphisms, COVID-19 Proteome, and Host Responses. PMID:33555895
Comprehensive Analysis of Tryptic Peptides Arising from Disulfide Linkages in NISTmAb and Their Use for Developing a Mass Spectral Library. PMID:33555887
Comprehensive Analysis of C. glutamicum Anaplerotic Deletion Mutants Under Defined d-Glucose Conditions. PMID:33553115
Transcriptomic and Proteomic Analyses of Nepenthes ampullaria and Nepenthes rafflesiana Reveal Parental Molecular Expression in the Pitchers of Their Hybrid, Nepenthes × hookeriana. PMID:33552113
Spatiotemporal processing of neural cell adhesion molecules 1 and 2 by BACE1 in vivo. PMID:33548223
N-linked glycosylation enzymes in the diatom Thalassiosira oceanica exhibit a diel cycle in transcript abundance and favor for NXT-type sites. PMID:33547363
Enforced dimerization between XBP1s and ATF6f enhances the protective effects of the UPR in models of neurodegeneration. PMID:33545358
Escherichia coli FabG 3-ketoacyl-ACP reductase proteins lacking the assigned catalytic triad residues are active enzymes. PMID:33545175
Yeast- and antibody-based tools for studying tryptophan C-mannosylation. PMID:33542533
Structural studies of RNase M5 reveal two-metal-ion supported two-step dsRNA cleavage for 5S rRNA maturation. PMID:33541205
The canine activated platelet secretome (CAPS): A translational model of thrombin-evoked platelet activation response. PMID:33537530
Assessing technical and biological variation in SWATH-MS-based proteomic analysis of chronic lymphocytic leukaemia cells. PMID:33536534
Neutrophil degranulation interconnects over-represented biological processes in atrial fibrillation. PMID:33536523
Enrichment of Neurodegenerative Microglia Signature in Brain-Derived Extracellular Vesicles Isolated from Alzheimer's Disease Mouse Models. PMID:33534581
BoxCarmax: A High-Selectivity Data-Independent Acquisition Mass Spectrometry Method for the Analysis of Protein Turnover and Complex Samples. PMID:33533601
GmDNJ1, a type-I heat shock protein 40 (HSP40), is responsible for both Growth and heat tolerance in soybean. PMID:33532690
Multiomics Analysis Provides Insight into the Laboratory Evolution of Escherichia coli toward the Metabolic Usage of Fluorinated Indoles. PMID:33532571
Harnessing Machine Learning To Unravel Protein Degradation in Escherichia coli. PMID:33531410
Targeted Quantification of the Lysosomal Proteome in Complex Samples. PMID:33530589
The novel PII-interactor PirC identifies phosphoglycerate mutase as key control point of carbon storage metabolism in cyanobacteria. PMID:33526690
Developmental synaptic regulator, TWEAK/Fn14 signaling, is a determinant of synaptic function in models of stroke and neurodegeneration. PMID:33526652
SUMOylation regulates the protein network and chromatin accessibility at glucocorticoid receptor-binding sites. PMID:33524141
The E3 ubiquitin ligase Cul4b promotes CD4+ T cell expansion by aiding the repair of damaged DNA. PMID:33524014
Analysis of Human Faecal Host Proteins: Responsiveness to 10-Week Dietary Intervention Modifying Dietary Protein Intake in Elderly Males. PMID:33521034
NeissLock provides an inducible protein anhydride for covalent targeting of endogenous proteins. PMID:33514717
NODAL/TGFβ signalling mediates the self-sustained stemness induced by PIK3CAH1047R homozygosity in pluripotent stem cells. PMID:33514588
LPS Tolerance Inhibits Cellular Respiration and Induces Global Changes in the Macrophage Secretome. PMID:33513762
Over-Expression of Hypochlorite Inducible Major Facilitator Superfamily (MFS) Pumps Reduces Antimicrobial Drug Susceptibility by Increasing the Production of MexXY Mediated by ArmZ in Pseudomonas aeruginosa. PMID:33510718
Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. PMID:33510206
Discovery of a small protein factor involved in the coordinated degradation of phycobilisomes in cyanobacteria. PMID:33509926
A glycoengineered antigen exploiting a conserved protein O-glycosylation pathway in the Burkholderia genus for detection of glanders infections. PMID:33509023
Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium. PMID:33505370
The Bloom syndrome complex senses RPA-coated single-stranded DNA to restart stalled replication forks. PMID:33500419
High-pH reversed-phase fractionated neural retina proteome of normal growing C57BL/6 mouse. PMID:33500412
Systematic Analysis of the Lysine Crotonylome and Multiple Posttranslational Modification Analysis (Acetylation, Succinylation, and Crotonylation) in Candida albicans. PMID:33500332
Serine Biosynthesis Is a Metabolic Vulnerability in IDH2-Driven Breast Cancer Progression. PMID:33500247
Disturbed intramitochondrial phosphatidic acid transport impairs cellular stress signaling. PMID:33497623
An Alveolata secretory machinery adapted to parasite host cell invasion. PMID:33495622
Pan-cancer analysis of transcripts encoding novel open-reading frames (nORFs) and their potential biological functions. PMID:33495453
Drosophila Sex Peptide controls the assembly of lipid microcarriers in seminal fluid. PMID:33495334
Does Proteomic Mirror Reflect Clinical Characteristics of Obesity? PMID:33494491
Proteomics Analysis of Gastric Cancer Patients with Diabetes Mellitus. PMID:33494396
The proteome of granulovacuolar degeneration and neurofibrillary tangles in Alzheimer's disease. PMID:33492460
A proteome signature for acute incisional pain in dorsal root ganglia of mice. PMID:33492035
MicroPOTS Analysis of Barrett's Esophageal Cell Line Models Identifies Proteomic Changes after Physiologic and Radiation Stress. PMID:33491460
Characterization of Odontogenic Differentiation from Human Dental Pulp Stem Cells Using TMT-Based Proteomic Analysis. PMID:33490242
A Hetero-Multimeric Chitinase-Containing Plasmodium falciparum and Plasmodium gallinaceum Ookinete-Secreted Protein Complex Involved in Mosquito Midgut Invasion. PMID:33489941
Design and evaluation of synthetic bacterial consortia for optimized phenanthrene degradation through the integration of genomics and shotgun proteomics. PMID:33489789
Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer. PMID:33482911
Cross-compartment signal propagation in the mitotic exit network. PMID:33481703
Integrative functional genomic analysis of intron retention in human and mouse brain with Alzheimer's disease. PMID:33480174
Proteomics analysis of a human brain sample from a mucolipidosis type IV patient reveals pathophysiological pathways. PMID:33478506
Isolation and Characterization of Equine Uterine Extracellular Vesicles: A Comparative Methodological Study. PMID:33478136
A Wolf in Another Wolf's Clothing: Post-Genomic Regulation Dictates Venom Profiles of Medically-Important Cryptic Kraits in India. PMID:33477742
Impact of WIN site inhibitor on the WDR5 interactome. PMID:33472061
Multiplexed CuAAC Suzuki-Miyaura Labeling for Tandem Activity-Based Chemoproteomic Profiling. PMID:33470097
Synthetic Siglec-9 Agonists Inhibit Neutrophil Activation Associated with COVID-19. PMID:33469569
A Picture Worth a Thousand Molecules-Integrative Technologies for Mapping Subcellular Molecular Organization and Plasticity in Developing Circuits. PMID:33469427
Chronic exposure of humans to high level natural background radiation leads to robust expression of protective stress response proteins. PMID:33469066
Rab1-AMPylation by Legionella DrrA is allosterically activated by Rab1. PMID:33469029
Staphylococcus aureus Trigger Factor Is Involved in Biofilm Formation and Cooperates with the Chaperone PpiB. PMID:33468596
Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling. PMID:33467856
Systemic Metabolic Alterations Correlate with Islet-Level Prostaglandin E2 Production and Signaling Mechanisms That Predict β-Cell Dysfunction in a Mouse Model of Type 2 Diabetes. PMID:33467110
Impaired complex I repair causes recessive Leber's hereditary optic neuropathy. PMID:33465056
Comparative evaluation of two methods for LC-MS/MS proteomic analysis of formalin fixed and paraffin embedded tissues. PMID:33453434
Omics Analysis of Blood-Responsive Regulon in Bordetella pertussis Identifies a Novel Essential T3SS Substrate. PMID:33450976
Proteome dynamics at broken replication forks reveal a distinct ATM-directed repair response suppressing DNA double-strand break ubiquitination. PMID:33450211
SP3-FAIMS Chemoproteomics for High-Coverage Profiling of the Human Cysteinome*. PMID:33442901
Biotin-Labelled Clavulanic Acid to Identify Proteins Target for Haptenation in Serum: Implications in Allergy Studies. PMID:33442385
Pathophysiological subtypes of Alzheimer's disease based on cerebrospinal fluid proteomics. PMID:33439986
Secretome Analysis of Clavibacter nebraskensis Strains Treated with Natural Xylem Sap In Vitro Predicts Involvement of Glycosyl Hydrolases and Proteases in Bacterial Aggressiveness. PMID:33435483
Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea. PMID:33434266
Comparative proteomics identifies Schlafen 5 (SLFN5) as a herpes simplex virus restriction factor that suppresses viral transcription. PMID:33432153
Modulation of immune cell reactivity with cis-binding Siglec agonists. PMID:33431669
Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequences. PMID:33430943
Proteomic and Functional Studies Reveal Detyrosinated Tubulin as Treatment Target in Sarcomere Mutation-Induced Hypertrophic Cardiomyopathy. PMID:33430602
Colistin Dependence in Extensively Drug-Resistant Acinetobacter baumannii Strain Is Associated with ISAjo2 and ISAba13 Insertions and Multiple Cellular Responses. PMID:33430070
Why Inclusion Matters for Alzheimer's Disease Biomarker Discovery in Plasma. PMID:33427747
Streamlined copper defenses make Bordetella pertussis reliant on custom-made operon. PMID:33420409
Mammalian cell proliferation requires noncatalytic functions of O-GlcNAc transferase. PMID:33419956
Microbe-Mineral Interaction and Novel Proteins for Iron Oxide Mineral Reduction in the Hyperthermophilic Crenarchaeon Pyrodictium delaneyi. PMID:33419739
Sex-dependent differences in the secretome of human endothelial cells. PMID:33413676
Uncovering the secretome of mesenchymal stromal cells exposed to healthy, traumatic, and degenerative intervertebral discs: a proteomic analysis. PMID:33413584
The active DNA-PK holoenzyme occupies a tensed state in a staggered synaptic complex. PMID:33412091
Mass Spectrometry Spatial-Omics on a Single Conductive Slide. PMID:33412004
Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis. PMID:33410508
Dysregulation of phosphoproteins in hepatocellular carcinoma revealed via quantitative analysis of the phosphoproteome. PMID:33408763
Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphid (Myzus persicae Sulzer). PMID:33407137
Bioinformatics: new tools and applications in life science and personalized medicine. PMID:33404829
Carbon Catabolite Repression in Filamentous Fungi Is Regulated by Phosphorylation of the Transcription Factor CreA. PMID:33402538
Disome-seq reveals widespread ribosome collisions that promote cotranslational protein folding. PMID:33402206
Identification and Characterization of Plant-Interacting Targets of Tomato Spotted Wilt Virus Silencing Suppressor. PMID:33401462
Arabidopsis mTERF9 protein promotes chloroplast ribosomal assembly and translation by establishing ribonucleoprotein interactions in vivo. PMID:33398331
Cell surface thermal proteome profiling tracks perturbations and drug targets on the plasma membrane. PMID:33398190
TDP-43 aggregation induced by oxidative stress causes global mitochondrial imbalance in ALS. PMID:33398173
Spatiotemporal profiling of cytosolic signaling complexes in living cells by selective proximity proteomics. PMID:33397984
Histone modifications during the life cycle of the brown alga Ectocarpus. PMID:33397407
Proteomics of Muscle Microdialysates Identifies Potential Circulating Biomarkers in Facioscapulohumeral Muscular Dystrophy. PMID:33396627
Transfection With Plasmid Causing Stable Expression of a Foreign Gene Affects General Proteome Pattern in Giardia lamblia Trophozoites. PMID:33392107
Phosphoproteomics identify arachidonic-acid-regulated signal transduction pathways modulating macrophage functions with implications for ovarian cancer. PMID:33391540
Identification of Critical Genes and Proteins for Stent Restenosis Induced by Esophageal Benign Hyperplasia in Esophageal Cancer. PMID:33391336
Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization. PMID:33391243
A Fast, Efficient and Easy to Implement Method to Purify Bacterial Pili From Lacticaseibacillus rhamnosus GG Based on Multimodal Chromatography. PMID:33391233
Transcriptomic and proteomic profiling revealed reprogramming of carbon metabolism in acetate-grown human pathogen Candida glabrata. PMID:33388061
Proteomic Analysis of Pre-Invasive Serous Lesions of the Endometrium and Fallopian Tube Reveals Their Metastatic Potential. PMID:33384952
The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function. PMID:33383959
Crosstalk between Long-Term Sublethal Oxidative Stress and Detrimental Inflammation as Potential Drivers for Age-Related Retinal Degeneration. PMID:33383836
The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice. PMID:33382950
Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae). PMID:33382763
Long-term transcriptomic and proteomic effects in Sprague Dawley rat thyroid and plasma after internal low dose 131I exposure. PMID:33382739
SCF-Fbxo42 promotes synaptonemal complex assembly by downregulating PP2A-B56. PMID:33382409
TrkC Is Essential for Nephron Function and Trans-Activates Igf1R Signaling. PMID:33380522
USP15 Deubiquitinase Safeguards Hematopoiesis and Genome Integrity in Hematopoietic Stem Cells and Leukemia Cells. PMID:33378683
Serum proteome-wide identified ATP citrate lyase as a novel informative diagnostic and prognostic biomarker in pediatric sepsis: A pilot study. PMID:33378581
The TRIM9/TRIM67 neuronal interactome reveals novel activators of morphogenesis. PMID:33378226
Cerebrospinal Fluid of Preeclamptic and Normotensive Pregnant Women Compared to Nonpregnant Women Analyzed with Mass Spectrometry. PMID:33376863
In-depth blood proteome profiling analysis revealed distinct functional characteristics of plasma proteins between severe and non-severe COVID-19 patients. PMID:33376242
Comparative Proteomics of Marinobacter sp. TT1 Reveals Corexit Impacts on Hydrocarbon Metabolism, Chemotactic Motility, and Biofilm Formation. PMID:33374976
Pseudouridines of tRNA Anticodon Stem-Loop Have Unexpected Role in Mutagenesis in Pseudomonas sp. PMID:33374637
Flow Cytometry Analysis of Circulating Extracellular Vesicle Subtypes from Fresh Peripheral Blood Samples. PMID:33374539
N-terminal VP1 Truncations Favor T = 1 Norovirus-Like Particles. PMID:33374273
Characterization of the Class I MHC Peptidome Resulting From DNCB Exposure of HaCaT Cells. PMID:33372950
Sex impacts cardiac function and the proteome response to thyroid hormone in aged mice. PMID:33372611
USP22 controls necroptosis by regulating receptor-interacting protein kinase 3 ubiquitination. PMID:33369872
FAM111A induces nuclear dysfunction in disease and viral restriction. PMID:33369867
Mass-spectrometry analysis of the human pineal proteome during night and day and in autism. PMID:33368564
Analysis of Pan-omics Data in Human Interactome Network (APODHIN). PMID:33363571
Synaptic Vesicles Dynamics in Neocortical Epilepsy. PMID:33362472
A proteomics-based method for identifying antigens within immune complexes. PMID:33362259
Granulocyte-Colony Stimulating Factor Reduces Cocaine-Seeking and Downregulates Glutamatergic Synaptic Proteins in Medial Prefrontal Cortex. PMID:33361463
Salmonella enterica Serovars Dublin and Enteritidis Comparative Proteomics Reveals Differential Expression of Proteins Involved in Stress Resistance, Virulence, and Anaerobic Metabolism. PMID:33361201
Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ. PMID:33357446
CROT (Carnitine O-Octanoyltransferase) Is a Novel Contributing Factor in Vascular Calcification via Promoting Fatty Acid Metabolism and Mitochondrial Dysfunction. PMID:33356393
BUB-1 targets PP2A:B56 to regulate chromosome congression during meiosis I in C. elegans oocytes. PMID:33355089
Mitochondrial defects in the respiratory complex I contribute to impaired translational initiation via ROS and energy homeostasis in SMA motor neurons. PMID:33353564
Comparative Analysis of the Transcriptome, Proteome, and miRNA Profile of Kupffer Cells and Monocytes. PMID:33352881
Enriched conditioning expands the regenerative ability of sensory neurons after spinal cord injury via neuronal intrinsic redox signaling. PMID:33349630
Cancer-secreted miRNAs regulate amino-acid-induced mTORC1 signaling and fibroblast protein synthesis. PMID:33345445
Proteomic and mitochondrial adaptations to early-life stress are distinct in juveniles and adults. PMID:33344706
B-Cell-Specific Myd88 L252P Expression Causes a Premalignant Gammopathy Resembling IgM MGUS. PMID:33343574
Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions. PMID:33339840
The mRNA Binding Proteome of Proliferating and Differentiated Muscle Cells. PMID:33338663
Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential. PMID:33334889
ApoC-III is a novel inducer of calcification in human aortic valves. PMID:33334888
The mTOR regulated RNA-binding protein LARP1 requires PABPC1 for guided mRNA interaction. PMID:33332560
Fast Deisotoping Algorithm and Its Implementation in the MSFragger Search Engine. PMID:33332123
The versatile interactome of chloroplast ribosomes revealed by affinity purification mass spectrometry. PMID:33330923
Seroconversion stages COVID19 into distinct pathophysiological states. PMID:33330890
GFOGER Peptide Modifies the Protein Content of Extracellular Vesicles and Inhibits Vascular Calcification. PMID:33330469
Ulcerative Colitis-Derived Colonoid Culture: A Multi-Mineral-Approach to Improve Barrier Protein Expression. PMID:33330453
Lysine in Combination With Estradiol Promote Dissemination of Estrogen Receptor Positive Breast Cancer via Upregulation of U2AF1 and RPN2 Proteins. PMID:33330095
The Puzzle of Metabolite Exchange and Identification of Putative Octotrico Peptide Repeat Expression Regulators in the Nascent Photosynthetic Organelles of Paulinella chromatophora. PMID:33329499
Anti-tumour immunity induces aberrant peptide presentation in melanoma. PMID:33328638
Small-molecule inhibitors of human mitochondrial DNA transcription. PMID:33328633
Hypusination Orchestrates the Antimicrobial Response of Macrophages. PMID:33326776
Peptide Correlation Analysis (PeCorA) Reveals Differential Proteoform Regulation. PMID:33325715
Towards the molecular architecture of the peroxisomal receptor docking complex. PMID:33323485
Peptide-Based Identification of Phytophthora Isolates and Phytophthora Detection in Planta. PMID:33322721
Novel Broad-Spectrum Antiviral Inhibitors Targeting Host Factors Essential for Replication of Pathogenic RNA Viruses. PMID:33322045
Degradation of arouser by endosomal microautophagy is essential for adaptation to starvation in Drosophila. PMID:33318080
Systematic Review of Multi-Omics Approaches to Investigate Toxicological Effects in Macrophages. PMID:33317022
ERCC1 mutations impede DNA damage repair and cause liver and kidney dysfunction in patients. PMID:33315086
A conserved cysteine-based redox mechanism sustains TFEB/HLH-30 activity under persistent stress. PMID:33314217
Urine proteomics for prediction of disease progression in patients with IgA nephropathy. PMID:33313853
Proteome of fluid from human ovarian small antral follicles reveals insights in folliculogenesis and oocyte maturation. PMID:33313811
Integrative vectors for regulated expression of SARS-CoV-2 proteins implicated in RNA metabolism. PMID:33313418
The Central Role of Salivary Metalloproteases in Host Acquired Resistance to Tick Feeding. PMID:33312963
ATP13A3 is a major component of the enigmatic mammalian polyamine transport system. PMID:33310703
Hypoxia and Hypoxia-Inducible Factor-1α Regulate Endoplasmic Reticulum Stress in Nucleus Pulposus Cells: Implications of Endoplasmic Reticulum Stress for Extracellular Matrix Secretion. PMID:33307037
Mass Spectral Analysis of Synthetic Peptides: Implications in Proteomics. PMID:33304200
Reply to Comments on Proteomic Investigations of Two Pakistani Naja Snake Venom Species Unravel the Venom Complexity, Posttranslational Modifications, and Presence of Extracellular Vesicles. Toxins 2020, 12, 669. PMID:33302394
Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity. PMID:33301708
Composition and origin of lung fluid proteome in premature infants and relationship to respiratory outcome. PMID:33301538
Altered N-glycan composition impacts flagella-mediated adhesion in Chlamydomonas reinhardtii. PMID:33300874
Detection and quantification of novel C-terminal TDP-43 fragments in ALS-TDP. PMID:33300249
Thermostability profiling of MHC-bound peptides: a new dimension in immunopeptidomics and aid for immunotherapy design. PMID:33298915
Autophagy-mediated metabolic effects of aspirin. PMID:33298861
Single Mutation in the NFU1 Gene Metabolically Reprograms Pulmonary Artery Smooth Muscle Cells. PMID:33297749
TINC- A Method to Dissect Regulatory Complexes at Single-Locus Resolution- Reveals an Extensive Protein Complex at the Nanog Promoter. PMID:33296673
Mild hyperlipidemia in mice aggravates platelet responsiveness in thrombus formation and exploration of platelet proteome and lipidome. PMID:33293576
Tandem mass tag-based proteomic analysis reveals cathepsin-mediated anti-autophagic and pro-apoptotic effects under proliferative diabetic retinopathy. PMID:33293479
A Mutation Upstream of the rplN-rpsD Ribosomal Operon Downregulates Bordetella pertussis Virulence Factor Production without Compromising Bacterial Survival within Human Macrophages. PMID:33293402
Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing. PMID:33292386
Subclinical effects of remote ischaemic conditioning in human kidney transplants revealed by quantitative proteomics. PMID:33292164
Proteomic Study Identifies Glycolytic and Inflammation Pathways Involved in Recurrent Otitis Media. PMID:33291465
Mitochondrial Transcription Factor A Binds to and Promotes Mutagenic Transcriptional Bypass of O4-Alkylthymidine Lesions. PMID:33290046
A structural inventory of native ribosomal ABCE1-43S pre-initiation complexes. PMID:33289941
Cytosolic sequestration of the vitamin D receptor as a therapeutic option for vitamin D-induced hypercalcemia. PMID:33288743
RNA-binding proteins La and HuR cooperatively modulate translation repression of PDCD4 mRNA. PMID:33288677
Hydrogen deuterium exchange mass spectrometry identifies the dominant paratope in CD20 antigen binding to the NCD1.2 monoclonal antibody. PMID:33284343
Biostimulant Effects of Glutacetine® and Its Derived Formulations Mixed With N Fertilizer on Post-heading N Uptake and Remobilization, Seed Yield, and Grain Quality in Winter Wheat. PMID:33281859
Differential Profile of Systemic Extracellular Vesicles From Sporadic and Familial Alzheimer's Disease Leads to Neuroglial and Endothelial Cell Degeneration. PMID:33281599
Proximity-based proteomics reveals the thylakoid lumen proteome in the cyanobacterium Synechococcus sp. PCC 7002. PMID:33280076
The substrate specificity of the human TRAPPII complex's Rab-guanine nucleotide exchange factor activity. PMID:33277614
A substrate binding model for the KEOPS tRNA modifying complex. PMID:33277478
Global proteomics of Ubqln2-based murine models of ALS. PMID:33277362
Multivalent lipid targeting by the calcium-independent C2A domain of synaptotagmin-like protein 4/granuphilin. PMID:33277360
Antioxidant ability of glutaredoxins and their role in symbiotic nitrogen fixation in Rhizobium leguminosarum bv. viciae 3841. PMID:33277272
Post-Translational Modification Analysis of VDAC1 in ALS-SOD1 Model Cells Reveals Specific Asparagine and Glutamine Deamidation. PMID:33276691
An Update of the Virion Proteome of Kaposi Sarcoma-Associated Herpesvirus. PMID:33276600
The ubiquitylome of developing cortical neurons. PMID:33274322
Establishing a mass spectrometry-based system for rapid detection of SARS-CoV-2 in large clinical sample cohorts. PMID:33273458
The catalytic mechanism of vitamin K epoxide reduction in a cellular environment. PMID:33273012
Beyond Melanin: Proteomics Reveals Virulence-Related Proteins in Paracoccidioides brasiliensis and Paracoccidioides lutzii Yeast Cells Grown in the Presence of L-Dihydroxyphenylalanine. PMID:33271902
Spatially Targeted Proteomics of the Host-Pathogen Interface during Staphylococcal Abscess Formation. PMID:33270421
GENCODE 2021. PMID:33270111
Shotgun proteomics coupled to nanoparticle-based biomarker enrichment reveals a novel panel of extracellular matrix proteins as candidate serum protein biomarkers for early-stage breast cancer detection. PMID:33267867
Divide-and-Conquer Matrisome Protein (DC-MaP) Strategy: An MS-Friendly Approach to Proteomic Matrisome Characterization. PMID:33266304
RNF41 regulates the damage recognition receptor Clec9A and antigen cross-presentation in mouse dendritic cells. PMID:33264090
Automated Capillary Isoelectric Focusing-Tandem Mass Spectrometry for Qualitative and Quantitative Top-Down Proteomics. PMID:33263984
Comparative Multiplexed Interactomics of SARS-CoV-2 and Homologous Coronavirus Nonstructural Proteins Identifies Unique and Shared Host-Cell Dependencies. PMID:33263384
Conformational maps of human 20S proteasomes reveal PA28- and immuno-dependent inter-ring crosstalks. PMID:33262340
Profiling the Murine SUMO Proteome in Response to Cardiac Ischemia and Reperfusion Injury. PMID:33260959
Function and Regulation of the Pyruvate Transporter CstA in Escherichia coli. PMID:33260635
A Multi-Omics Protocol for Swine Feces to Elucidate Longitudinal Dynamics in Microbiome Structure and Function. PMID:33260576
Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2. PMID:33259812
Reduced reticulum-mitochondria Ca2+ transfer is an early and reversible trigger of mitochondrial dysfunctions in diabetic cardiomyopathy. PMID:33258101
A Versatile Isobaric Tag Enables Proteome Quantification in Data-Dependent and Data-Independent Acquisition Modes. PMID:33256395
Hepatitis B Core Protein Is Post-Translationally Modified through K29-Linked Ubiquitination. PMID:33256078
Frequent Assembly of Chimeric Complexes in the Protein Interaction Network of an Interspecies Yeast Hybrid. PMID:33252673
Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults. PMID:33250895
Genome- and Proteome-Wide Analysis of Lysine Acetylation in Vibrio vulnificus Vv180806 Reveals Its Regulatory Roles in Virulence and Antibiotic Resistance. PMID:33250879
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis. PMID:33245775
Machine Learning Analysis of the Cerebrovascular Thrombi Proteome in Human Ischemic Stroke: An Exploratory Study. PMID:33240201
Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers. PMID:33239640
Effects of Excess Manganese on the Xylem Sap Protein Profile of Tomato (Solanum lycopersicum) as Revealed by Shotgun Proteomic Analysis. PMID:33238539
Open Search Strategy for Inferring the Masses of Cross-Link Adducts on Proteins. PMID:33237725
MobiDB: intrinsically disordered proteins in 2021. PMID:33237329
An endogenous PI3K interactome promoting astrocyte-mediated neuroprotection identifies a novel association with RNA-binding protein ZC3H14. PMID:33234594
Is the Proteome of Bronchoalveolar Lavage Extracellular Vesicles a Marker of Advanced Lung Cancer? PMID:33233545
Top-Down Proteomics of Endogenous Membrane Proteins Enabled by Cloud Point Enrichment and Multidimensional Liquid Chromatography-Mass Spectrometry. PMID:33231430
The secretome of liver X receptor agonist-treated early outgrowth cells decreases atherosclerosis in Ldlr-/- mice. PMID:33231376
Convergence of Plasma Metabolomics and Proteomics Analysis to Discover Signatures of High-Grade Serous Ovarian Cancer. PMID:33228226
The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase. PMID:33225887
Integrating Top-Down and Bottom-Up Mass Spectrometric Strategies for Proteomic Profiling of Iranian Saw-Scaled Viper, Echis carinatus sochureki, Venom. PMID:33225711
Altered N-linked glycosylation in endometrial cancer. PMID:33222001
Moniliella spathulata, an oil-degrading yeast, which promotes growth of barley in oil-polluted soil. PMID:33219393
The Constitutive Proteome of Human Aqueous Humor and Race Specific Alterations. PMID:33217969
Neuropeptidomic Analysis of a Genetically Defined Cell Type in Mouse Brain and Pituitary. PMID:33217339
Phosphoproteomics reveals novel modes of function and inter-relationships among PIKKs in response to genotoxic stress. PMID:33215756
Site-specific ubiquitination of the E3 ligase HOIP regulates apoptosis and immune signaling. PMID:33215740
Deletion of the deISGylating enzyme USP18 enhances tumour cell antigenicity and radiosensitivity. PMID:33214684
Cadmium stress dictates central carbon flux and alters membrane composition in Streptococcus pneumoniae. PMID:33214631
Proteome Analysis Reveals a Significant Host-Specific Response in Rhizobium leguminosarum bv. viciae Endosymbiotic Cells. PMID:33214187
Proteomic Insights into Senescence of Testicular Peritubular Cells from a Nonhuman Primate Model. PMID:33213088
Proteomic Analysis of Porcine-Derived Collagen Membrane and Matrix. PMID:33212864
From ArrayExpress to BioStudies. PMID:33211879
PRMT1 inhibition induces differentiation of colon cancer cells. PMID:33208761
The ATPase ATP6V1A facilitates rabies virus replication by promoting virion uncoating and interacting with the viral matrix protein. PMID:33208464
A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits. PMID:33207182
Proteomic analysis of extracellular vesicles reveals an immunogenic cargo in rheumatoid arthritis synovial fluid. PMID:33204424
Natural Exogenous Antioxidant Defense against Changes in Human Skin Fibroblast Proteome Disturbed by UVA Radiation. PMID:33204393
Dynamics of an LPS translocon induced by substrate and an antimicrobial peptide. PMID:33199913
Exploring the Role of a Novel Peptide from Allomyrina dichotoma Larvae in Ameliorating Lipid Metabolism in Obesity. PMID:33198343
Integrated Proteomic and Metabolomic Profiling of Phytophthora cinnamomi Attack on Sweet Chestnut (Castanea sativa) Reveals Distinct Molecular Reprogramming Proximal to the Infection Site and Away from It. PMID:33198329
Prenatal Endotoxin Exposure Induces Fetal and Neonatal Renal Inflammation via Innate and Th1 Immune Activation in Preterm Pigs. PMID:33193334
The Temperature-Regulation of Pseudomonas aeruginosa cmaX-cfrX-cmpX Operon Reveals an Intriguing Molecular Network Involving the Sigma Factors AlgU and SigX. PMID:33193206
Rv2577 of Mycobacterium tuberculosis Is a Virulence Factor With Dual Phosphatase and Phosphodiesterase Functions. PMID:33193164
Isolation and Characterization of Multi-Protein Complexes Enriched in the K-Cl Co-transporter 2 From Brain Plasma Membranes. PMID:33192291
A translational program that suppresses metabolism to shield the genome. PMID:33188200
A proteomic approach reveals possible molecular mechanisms and roles for endosymbiotic bacteria in begomovirus transmission by whiteflies. PMID:33185242
OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes. PMID:33179748
Co-activation of Akt, Nrf2, and NF-κB signals under UPRER in torpid Myotis ricketti bats for survival. PMID:33177645
Digital microfluidic isolation of single cells for -Omics. PMID:33177493
Proteomic Identification of Coxiella burnetii Effector Proteins Targeted to the Host Cell Mitochondria During Infection. PMID:33177156
HYpro16: A Two-Proteome Mixture to Assess Interference in Isobaric Tag-Based Sample Multiplexing Experiments. PMID:33175540
Nidogen 1-Enriched Extracellular Vesicles Facilitate Extrahepatic Metastasis of Liver Cancer by Activating Pulmonary Fibroblasts to Secrete Tumor Necrosis Factor Receptor 1. PMID:33173740
First sequencing of ancient coral skeletal proteins. PMID:33173075
Different Routes of Protein Folding Contribute to Improved Protein Production in Saccharomyces cerevisiae. PMID:33173005
Spatial constraints on chromosomes are instrumental to meiotic pairing. PMID:33172984
TSPAN1: A Novel Protein Involved in Head and Neck Squamous Cell Carcinoma Chemoresistance. PMID:33167355
An Unbiased Approach to Mapping the Signaling Network of the Pseudorabies Virus US3 Protein. PMID:33167340
Spontaneous regression of micro-metastases following primary tumor excision: a critical role for primary tumor secretome. PMID:33158447
The Proteomic Landscape of Centromeric Chromatin Reveals an Essential Role for the Ctf19CCAN Complex in Meiotic Kinetochore Assembly. PMID:33157029
Spatially and cell-type resolved quantitative proteomic atlas of healthy human skin. PMID:33154365
Cyclin Y is expressed in Platelets and Modulates Integrin Outside-in Signaling. PMID:33153214
The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traits. PMID:33151931
Cysteine oxidation and disulfide formation in the ribosomal exit tunnel. PMID:33149120
A trimeric Rab7 GEF controls NPC1-dependent lysosomal cholesterol export. PMID:33144569
Aprotinin Inhibits SARS-CoV-2 Replication. PMID:33143316
Proteomic Adaptation of Streptococcus pneumoniae to the Antimicrobial Peptide Human Beta Defensin 3 (hBD3) in Comparison to Other Cell Surface Stresses. PMID:33143252
Marked Increased Production of Acute Phase Reactants by Skeletal Muscle during Cancer Cachexia. PMID:33142864
β-Barrels covalently link peptidoglycan and the outer membrane in the α-proteobacterium Brucella abortus. PMID:33139884
Novel Aza-podophyllotoxin derivative induces oxidative phosphorylation and cell death via AMPK activation in triple-negative breast cancer. PMID:33139797
A First Glimpse of the Mexican Fruit Fly Anastrepha ludens (Diptera: Tephritidae) Antenna Morphology and Proteome in Response to a Proteinaceous Attractant. PMID:33138264
Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2. PMID:33137177
Metabolic shift underlies recovery in reversible infantile respiratory chain deficiency. PMID:33128823
Mass spectrometry-based abundance atlas of ABC transporters in human liver, gut, kidney, brain and skin. PMID:33128234
The Complexity and Dynamics of the Tissue Glycoproteome Associated With Prostate Cancer Progression. PMID:33127837
Electron-Based Dissociation Is Needed for O-Glycopeptides Derived from OpeRATOR Proteolysis. PMID:33125225
Irgm2 and Gate-16 cooperatively dampen Gram-negative bacteria-induced caspase-11 response. PMID:33124769
Child murder in the Early Bronze Age: proteomic sex identification of a cold case from Schleinbach, Austria. PMID:33123298
Transcriptomes of Major Proximal Tubule Cell Culture Models. PMID:33122286
Molecular architecture and domain arrangement of the placental malaria protein VAR2CSA suggests a model for carbohydrate binding. PMID:33122198
Leishmania-infected macrophages release extracellular vesicles that can promote lesion development. PMID:33122174
Protein Composition of the Subretinal Fluid Suggests Selective Diffusion of Vitreous Proteins in Retinal Detachment. PMID:33117608
Proteomics of regenerated tissue in response to a titanium implant with a bioactive surface in a rat tibial defect model. PMID:33116264
Proteomic signatures of acute oxidative stress response to paraquat in the mouse heart. PMID:33116222
Phenotypic and proteomic approaches of the response to iron-limited condition in Staphylococcus lugdunensis. PMID:33115407
Enzymatic Dissociation Induces Transcriptional and Proteotype Bias in Brain Cell Populations. PMID:33114694
Radiation Response of Human Cardiac Endothelial Cells Reveals a Central Role of the cGAS-STING Pathway in the Development of Inflammation. PMID:33114474
Proteomic analysis of mitochondrial biogenesis in cardiomyocytes differentiated from human induced pluripotent stem cells. PMID:33112656
Cp1/cathepsin L is required for autolysosomal clearance in Drosophila. PMID:33112206
SARS-CoV-2 evades immune detection in alveolar macrophages. PMID:33112036
Tandem Mass Tag-Based Serum Proteome Profiling for Biomarker Discovery in Young Duchenne Muscular Dystrophy Boys. PMID:33110978
O-Pair Search with MetaMorpheus for O-glycopeptide characterization. PMID:33106676
Spastin recovery in hereditary spastic paraplegia by preventing neddylation-dependent degradation. PMID:33106322
A combinatorial native MS and LC-MS/MS approach reveals high intrinsic phosphorylation of human Tau but minimal levels of other key modifications. PMID:33106314
Proteomic Investigations of Two Pakistani Naja Snake Venoms Species Unravel the Venom Complexity, Posttranslational Modifications, and Presence of Extracellular Vesicles. PMID:33105837
Heat Stress Triggers Differential Protein Accumulation in the Extracellular Matrix of Sorghum Cell Suspension Cultures. PMID:33105781
Deciphering the Structural Enigma of HLA Class-II Binding Peptides for Enhanced Immunoinformatics-based Prediction of Vaccine Epitopes. PMID:33103906
Ovarian Blood Sampling Identifies Junction Plakoglobin as a Novel Biomarker of Early Ovarian Cancer. PMID:33102207
Putative Bifunctional Chorismate Mutase/Prephenate Dehydratase Contributes to the Virulence of Acidovorax citrulli. PMID:33101336
Copper detoxification machinery of the brain-eating amoeba Naegleria fowleri involves copper-translocating ATPase and the antioxidant system. PMID:33096396
Towards middle-up analysis of polyclonal antibodies: subclass-specific N-glycosylation profiling of murine immunoglobulin G (IgG) by means of HPLC-MS. PMID:33093535
HLA-DR15 Molecules Jointly Shape an Autoreactive T Cell Repertoire in Multiple Sclerosis. PMID:33091337
The on-premise data sharing infrastructure e!DAL: Foster FAIR data for faster data acquisition. PMID:33090199
Comparative gender peptidomics of Bothrops atrox venoms: are there differences between them? PMID:33088286
Phosphodiesterase 2A2 regulates mitochondria clearance through Parkin-dependent mitophagy. PMID:33087821
Identification of drivers of breast cancer invasion by secretome analysis: insight into CTGF signaling. PMID:33087801
Fasnall Induces Atypically Transient Stress Granules Independently of FASN Inhibition. PMID:33083719
Mass Spectrometric Analysis of Antibody-Epitope Peptide Complex Dissociation: Theoretical Concept and Practical Procedure of Binding Strength Characterization. PMID:33080923
Neuroretinal-Derived Caveolin-1 Promotes Endotoxin-Induced Inflammation in the Murine Retina. PMID:33079993
Comprehensive proteomic investigation of infectious and inflammatory changes in late preterm prelabour rupture of membranes. PMID:33077789
A streamlined pipeline for multiplexed quantitative site-specific N-glycoproteomics. PMID:33077710
Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney. PMID:33072769
Lineage-Specific Proteomic Signatures in the Mycobacterium tuberculosis Complex Reveal Differential Abundance of Proteins Involved in Virulence, DNA Repair, CRISPR-Cas, Bioenergetics and Lipid Metabolism. PMID:33072011
The Composition and the Structure of MCC/Eisosomes in Neurospora crassa. PMID:33071997
A high-stringency blueprint of the human proteome. PMID:33067450
Mapping glycan-mediated galectin-3 interactions by live cell proximity labeling. PMID:33067390
OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS. PMID:33067342
Comparative proteomics analysis of dietary restriction in Drosophila. PMID:33064752
Engineering Af1521 improves ADP-ribose binding and identification of ADP-ribosylated proteins. PMID:33060572
Toxin-like neuropeptides in the sea anemone Nematostella unravel recruitment from the nervous system to venom. PMID:33060291
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. PMID:33060197
NEDD4L-mediated Merlin ubiquitination facilitates Hippo pathway activation. PMID:33058421
An integrated analysis of Maglemose bone points reframes the Early Mesolithic of Southern Scandinavia. PMID:33057088
Temporal Proteomic Profiling of SH-SY5Y Differentiation with Retinoic Acid Using FAIMS and Real-Time Searching. PMID:33054241
Improved Sensitivity of Ultralow Flow LC-MS-Based Proteomic Profiling of Limited Samples Using Monolithic Capillary Columns and FAIMS Technology. PMID:33054160
A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions. PMID:33053376
Activation of the CARD8 Inflammasome Requires a Disordered Region. PMID:33053349
Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation. PMID:33053346
Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation Factors. PMID:33053322
H3K4me2 regulates the recovery of protein biosynthesis and homeostasis following DNA damage. PMID:33046905
Comparison of Proteomic Responses as Global Approach to Antibiotic Mechanism of Action Elucidation. PMID:33046497
Neural cell adhesion molecule 1 is a novel autoantigen in membranous lupus nephritis. PMID:33045259
Quantitative Visions of Reality at the Tick-Host Interface: Biochemistry, Genomics, Proteomics, and Transcriptomics as Measures of Complete Inventories of the Tick Sialoverse. PMID:33042874
Combined Methylome, Transcriptome and Proteome Analyses Document Rapid Acclimatization of a Bacterium to Environmental Changes. PMID:33042055
Growth media selection alters the proteome profiles of three model microorganisms. PMID:33038513
The E3 ubiquitin ligase HectD3 attenuates cardiac hypertrophy and inflammation in mice. PMID:33037313
The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans. PMID:33037220
Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization. PMID:33037214
Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature. PMID:33036317
The tissue proteome in the multi-omic landscape of kidney disease. PMID:33028957
Temporal Proteomic Analysis of Herpes Simplex Virus 1 Infection Reveals Cell-Surface Remodeling via pUL56-Mediated GOPC Degradation. PMID:33027661
Respiratory Supercomplexes Promote Mitochondrial Efficiency and Growth in Severely Hypoxic Pancreatic Cancer. PMID:33027658
A Novel Proteomic Method Reveals NLS Tagging of T-DM1 Contravenes Classical Nuclear Transport in a Model of HER2-Positive Breast Cancer. PMID:33024794
The Glycoprotease CpaA Secreted by Medically Relevant Acinetobacter Species Targets Multiple O-Linked Host Glycoproteins. PMID:33024038
Spatially Resolved Activity-based Proteomic Profiles of the Murine Small Intestinal Lipases. PMID:33023980
The glucose-sensing transcription factor ChREBP is targeted by proline hydroxylation. PMID:33023907
Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell line. PMID:33023468
Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco. PMID:33020657
Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity. PMID:33020478
Proteotyping Environmental Microorganisms by Phylopeptidomics: Case Study Screening Water from a Radioactive Material Storage Pool. PMID:33020444
Exploring metal availability in the natural niche of Streptococcus pneumoniae to discover potential vaccine antigens. PMID:33017224
Isobaric Tag-Based Protein Profiling across Eight Human Cell Lines Using High-Field Asymmetric Ion Mobility Spectrometry and Real-Time Database Searching. PMID:33015980
Cross-Stress Adaptation in a Piezophilic and Hyperthermophilic Archaeon From Deep Sea Hydrothermal Vent. PMID:33013758
Selection for Resistance to a Glyphosate-Containing Herbicide in Salmonella enterica Does Not Result in a Sustained Activation of the Tolerance Response or Increased Cross-Tolerance and Cross-Resistance to Clinically Important Antibiotics. PMID:33008821
Combinatory Treatment of Canavanine and Arginine Deprivation Efficiently Targets Human Glioblastoma Cells via Pleiotropic Mechanisms. PMID:33008000
XPO1E571K Mutation Modifies Exportin 1 Localisation and Interactome in B-cell Lymphoma. PMID:33007990
Pancreatic Tissue Proteomics Unveils Key Proteins, Pathways, and Networks Associated with Type 1 Diabetes. PMID:33007151
Integrative Analysis of Membrane Proteome and MicroRNA Reveals Novel Lung Cancer Metastasis Biomarkers. PMID:33005184
Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipients. PMID:33004079
Structure of the TFIIIC subcomplex τA provides insights into RNA polymerase III pre-initiation complex formation. PMID:32999288
Staphylococcus aureus Releases Proinflammatory Membrane Vesicles To Resist Antimicrobial Fatty Acids. PMID:32999082
Fusidic acid resistance through changes in the dynamics of the drug target. PMID:32999060
Comprehensive histone epigenetics: A mass spectrometry based screening assay to measure epigenetic toxicity. PMID:32995308
Structure-based validation can drastically underestimate error rate in proteome-wide cross-linking mass spectrometry studies. PMID:32994567
Sex Steroids Induce Membrane Stress Responses and Virulence Properties in Pseudomonas aeruginosa. PMID:32994320
Memory-Enhancing Effects of Origanum majorana Essential Oil in an Alzheimer's Amyloid beta1-42 Rat Model: A Molecular and Behavioral Study. PMID:32993114
Molecular determinants of MED1 interaction with the DNA bound VDR-RXR heterodimer. PMID:32990725
Metabolic precision labeling enables selective probing of O-linked N-acetylgalactosamine glycosylation. PMID:32989128
Matrix reverses immortalization-mediated stem cell fate determination. PMID:32987274
Genome-Wide Identification of Dickeya solani Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host Solanum tuberosum and a Weed-Host Solanum dulcamara. PMID:32983224
Biogenesis of HLA Ligand Presentation in Immune Cells Upon Activation Reveals Changes in Peptide Length Preference. PMID:32983136
Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism. PMID:32978391
The atypical chemokine receptor 3 interacts with Connexin 43 inhibiting astrocytic gap junctional intercellular communication. PMID:32978390
α2-Macroglobulin-like protein 1 can conjugate and inhibit proteases through their hydroxyl groups, because of an enhanced reactivity of its thiol ester. PMID:32978260
PFN2 and NAA80 cooperate to efficiently acetylate the N-terminus of actin. PMID:32978259
GADD34 is a modulator of autophagy during starvation. PMID:32978159
Structural basis for DNA recognition and allosteric control of the retinoic acid receptors RAR-RXR. PMID:32974652
Combined Proteome and Transcriptome Analysis of Heat-Primed Azalea Reveals New Insights Into Plant Heat Acclimation Memory. PMID:32973837
The Proteome and Secretome of Cortical Brain Cells Infected With Herpes Simplex Virus. PMID:32973653
The CNS Myelin Proteome: Deep Profile and Persistence After Post-mortem Delay. PMID:32973451
Yeast Ppz1 protein phosphatase toxicity involves the alteration of multiple cellular targets. PMID:32973189
MFSD7C switches mitochondrial ATP synthesis to thermogenesis in response to heme. PMID:32973183
ATR is essential for preservation of cell mechanics and nuclear integrity during interstitial migration. PMID:32973141
Abiotic and past climatic conditions drive protein abundance variation among natural populations of the caddisfly Crunoecia irrorata. PMID:32968134
Genetic screens reveal a central role for heme metabolism in artemisinin susceptibility. PMID:32968076
Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90.1 and ROF1. PMID:32967551
Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning. PMID:32967266
Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation. PMID:32966781
Molecular classification of the placebo effect in nausea. PMID:32966280
RNF43 truncations trap CK1 to drive niche-independent self-renewal in cancer. PMID:32965059
Affinity proteomic dissection of the human nuclear cap-binding complex interactome. PMID:32960270
Rubisco lysine acetylation occurs at very low stoichiometry in mature Arabidopsis leaves: implications for regulation of enzyme function. PMID:32959870
Vitamin D3 receptor polymorphisms regulate T cells and T cell-dependent inflammatory diseases. PMID:32958661
Endoplasmic reticulum chaperones stabilize ligand-receptive MR1 molecules for efficient presentation of metabolite antigens. PMID:32958637
Hepatic FTO is dispensable for the regulation of metabolism but counteracts HCC development in vivo. PMID:32956847
A regulatory region on RIPK2 is required for XIAP binding and NOD signaling activity. PMID:32954645
Mass spectrometry characterization of light chain fragmentation sites in cardiac AL amyloidosis: insights into the timing of proteolysis. PMID:32952127
Rapid and direct control of target protein levels with VHL-recruiting dTAG molecules. PMID:32948771
Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes. PMID:32948758
Can Scoliotic Discs Be Controls for Molecular Studies in Intervertebral Disc Research? Insights From Proteomics. PMID:32945197
Global reprogramming of virulence and antibiotic resistance in Pseudomonas aeruginosa by a single nucleotide polymorphism in elongation factor, fusA1. PMID:32943550
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. PMID:32942174
Quantitative mapping of transcriptome and proteome dynamics during polarization of human iPSC-derived neurons. PMID:32940601
Deep Learning in Proteomics. PMID:32939979
Quantitative Data-Independent Acquisition Glycoproteomics of Sparkling Wine. PMID:32938748
Extensive SUMO Modification of Repressive Chromatin Factors Distinguishes Pluripotent from Somatic Cells. PMID:32937131
Using Deep Learning to Extrapolate Protein Expression Measurements. PMID:32937025
Diabetic nephropathy associates with deregulation of enzymes involved in kidney sulphur metabolism. PMID:32935914
Generation of SARS-CoV-2 S1 Spike Glycoprotein Putative Antigenic Epitopes in Vitro by Intracellular Aminopeptidases. PMID:32931291
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. PMID:32931287
Exploring GPCR-arrestin interfaces with genetically encoded crosslinkers. PMID:32929862
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. PMID:32929271
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. PMID:32929206
Regulation of titin-based cardiac stiffness by unfolded domain oxidation (UnDOx). PMID:32929035
A malectin-like receptor kinase regulates cell death and pattern-triggered immunity in soybean. PMID:32924279
Nucleoporin TPR is an integral component of the TREX-2 mRNA export pathway. PMID:32917881
Oxidation of Cytochrome 605 Is the Rate-Limiting Step when Ferrimicrobium acidiphilum Respires Aerobically on Soluble Iron. PMID:32917753
Connectivity mapping of glomerular proteins identifies dimethylaminoparthenolide as a new inhibitor of diabetic kidney disease. PMID:32913274
Mapping and identification of soft corona proteins at nanoparticles and their impact on cellular association. PMID:32913217
CaMKK2 is inactivated by cAMP-PKA signaling and 14-3-3 adaptor proteins. PMID:32913128
O-Fucosylation of ADAMTSL2 is required for secretion and is impacted by geleophysic dysplasia-causing mutations. PMID:32913123
IgE Effector Mechanisms, in Concert with Mast Cells, Contribute to Acquired Host Defense against Staphylococcusaureus. PMID:32910906
The type VII secretion system protects Staphylococcus aureus against antimicrobial host fatty acids. PMID:32908165
A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts. PMID:32908151
Phosphorylation of Toxoplasma gondii Secreted Proteins during Acute and Chronic Stages of Infection. PMID:32907954
Some like it hot: population-specific adaptations in venom production to abiotic stressors in a widely distributed cnidarian. PMID:32907568
Trypanosoma vivax infection in sheep: Different patterns of virulence and pathogenicity associated with differentially expressed proteomes. PMID:32904712
Spleen proteomics data from high fat diet fed mice. PMID:32904176
Peracylation Coupled with Tandem Mass Spectrometry for Structural Sequencing of Sulfated Glycosaminoglycan Mixtures without Depolymerization. PMID:32902282
Molecular basis for the bifunctional Uba4-Urm1 sulfur-relay system in tRNA thiolation and ubiquitin-like conjugation. PMID:32901956
Cholesterol sensing by CD81 is important for hepatitis C virus entry. PMID:32900848
The Molecular Floodgates of Stress-Induced Senescence Reveal Translation, Signalling and Protein Activity Central to the Post-Mortem Proteome. PMID:32899302
Technical report: Targeted proteomic analysis reveals enrichment of atypical ubiquitin chains in contractile murine tissues. PMID:32898700
Structural Analysis of the Regulatory GAF Domains of cGMP Phosphodiesterase Elucidates the Allosteric Communication Pathway. PMID:32898583
Context dependent effects of ascorbic acid treatment in TET2 mutant myeloid neoplasia. PMID:32895473
Histone chaperone FACT represses retrotransposon MERVL and MERVL-derived cryptic promoters. PMID:32894293
Isobaric Matching between Runs and Novel PSM-Level Normalization in MaxQuant Strongly Improve Reporter Ion-Based Quantification. PMID:32892627
Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells. PMID:32891189
Allosteric Priming of E. coli CheY by the Flagellar Motor Protein FliM. PMID:32891187
A CEP Peptide Receptor-Like Kinase Regulates Auxin Biosynthesis and Ethylene Signaling to Coordinate Root Growth and Symbiotic Nodulation in Medicago truncatula. PMID:32887805
Polydisperse molecular architecture of connexin 26/30 heteromeric hemichannels revealed by atomic force microscopy imaging. PMID:32887797
Homozygous expression of the myofibrillar myopathy-associated p.W2710X filamin C variant reveals major pathomechanisms of sarcomeric lesion formation. PMID:32887649
Mass spectrometry-based analysis of formalin-fixed, paraffin-embedded distal cholangiocarcinoma identifies stromal thrombospondin-2 as a potential prognostic marker. PMID:32887625
Deciphering the secretome of leukocyte-platelet rich fibrin: towards a better understanding of its wound healing properties. PMID:32884030
Citrus Vascular Proteomics Highlights the Role of Peroxidases and Serine Proteases during Huanglongbing Disease Progression. PMID:32883801
Palaeoproteomics gives new insight into early southern African pastoralism. PMID:32879376
Mutant thermal proteome profiling for characterization of missense protein variants and their associated phenotypes within the proteome. PMID:32878984
Growth Factor Receptor Signaling Inhibition Prevents SARS-CoV-2 Replication. PMID:32877642
Lysine acetylation of F-actin decreases tropomyosin-based inhibition of actomyosin activity. PMID:32873710
Exploring the Diversity of Cysteine-Rich Natural Product Peptides via MS/MS Fingerprint Ions. PMID:32872784
Lowering Sample Requirements to Study Tyrosine Kinase Signaling Using Phosphoproteomics with the TMT Calibrator Approach. PMID:32865326
The Role of RodA-Conserved Cysteine Residues in the Aspergillus fumigatus Conidial Surface Organization. PMID:32859091
A ubiquitin variant-based affinity approach selectively identifies substrates of the ubiquitin ligase E6AP in complex with HPV-11 E6 or HPV-16 E6. PMID:32855237
Proteomic Profiling of Extracellular Vesicles Derived from Cerebrospinal Fluid of Alzheimer's Disease Patients: A Pilot Study. PMID:32854315
BAG5 Promotes Alpha-Synuclein Oligomer Formation and Functionally Interacts With the Autophagy Adaptor Protein p62. PMID:32850835
Host-Defense Peptides Caerin 1.1 and 1.9 Stimulate TNF-Alpha-Dependent Apoptotic Signals in Human Cervical Cancer HeLa Cells. PMID:32850805
Comparative Genomic and Secretomic Analysis Provide Insights Into Unique Agar Degradation Function of Marine Bacterium Vibrio fluvialis A8 Through Horizontal Gene Transfer. PMID:32849481
Verticillium longisporum Elicits Media-Dependent Secretome Responses With Capacity to Distinguish Between Plant-Related Environments. PMID:32849460
Longitudinal Stroke Recovery Associated With Dysregulation of Complement System-A Proteomics Pathway Analysis. PMID:32849183
ITEM-THREE analysis of a monoclonal anti-malaria antibody reveals its assembled epitope on the pfMSP119 antigen. PMID:32848020
The Viral Polymerase Complex Mediates the Interaction of Viral Ribonucleoprotein Complexes with Recycling Endosomes during Sendai Virus Assembly. PMID:32843550
An Integrative Omics Approach Reveals Involvement of BRCA1 in Hepatic Metastatic Progression of Colorectal Cancer. PMID:32842712
Enrichment of microsomes from Chinese hamster ovary cells by subcellular fractionation for its use in proteomic analysis. PMID:32841274
Quantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: Detection of viral proteins and host's biological processes altered by the infection. PMID:32835036
Pseudomonas aeruginosa Presents Multiple Vital Changes in Its Proteome in the Presence of 3-Hydroxyphenylacetic Acid, a Promising Antimicrobial Agent. PMID:32832748
Cell density-dependent proteolysis by HtrA1 induces translocation of zyxin to the nucleus and increased cell survival. PMID:32826880
Multiple Drug-Induced Stress Responses Inhibit Formation of Escherichia coli Biofilms. PMID:32826218
Protein Identification of Venoms of the African Spitting Cobras, Naja mossambica and Naja nigricincta nigricincta. PMID:32823821
Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening. PMID:32821403
Canonical Notch ligands and Fringes have distinct effects on NOTCH1 and NOTCH2. PMID:32820046
Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media. PMID:32817546
Biotinylated Surfome Profiling Identifies Potential Biomarkers for Diagnosis and Therapy of Aspergillus fumigatus Infection. PMID:32817453
Analytical Guidelines for co-fractionation Mass Spectrometry Obtained through Global Profiling of Gold Standard Saccharomyces cerevisiae Protein Complexes. PMID:32817346
Generation and validation of recombinant antibodies to study human aminoacyl-tRNA synthetases. PMID:32817337
Immunostimulation by Lactobacillus kefiri S-layer proteins with distinct glycosylation patterns requires different lectin partners. PMID:32817316
Phosphorylation-Dependent Assembly of a 14-3-3 Mediated Signaling Complex during Red Blood Cell Invasion by Plasmodium falciparum Merozoites. PMID:32817103
Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli. PMID:32813020
Phosphorylation by Aurora B kinase regulates caspase-2 activity and function. PMID:32811973
Targeting a helix-in-groove interaction between E1 and E2 blocks ubiquitin transfer. PMID:32807965
Dissimilatory sulfate reduction in the archaeon 'Candidatus Vulcanisaeta moutnovskia' sheds light on the evolution of sulfur metabolism. PMID:32807893
Mitochondrial dysfunction caused by outer membrane vesicles from Gram-negative bacteria activates intrinsic apoptosis and inflammation. PMID:32807891
Selective inhibition of STAT3 signaling using monobodies targeting the coiled-coil and N-terminal domains. PMID:32807795
HIF-1α and HIF-2α differently regulate tumour development and inflammation of clear cell renal cell carcinoma in mice. PMID:32807776
Cellular and Extracellular Proteome of the Animal Pathogen Corynebacterium silvaticum, a Close Relative of Zoonotic Corynebacterium ulcerans and Corynebacterium pseudotuberculosis. PMID:32806579
In-depth quantitative proteomics uncovers specie-specific metabolic programs in Leishmania (Viannia) species. PMID:32804927
Mitochondrial fatty acid synthesis coordinates oxidative metabolism in mammalian mitochondria. PMID:32804083
Premature Activation of Immune Transcription Programs in Autoimmune-Predisposed Mouse Embryonic Stem Cells and Blastocysts. PMID:32796510
Splicing variation of BMP2K balances abundance of COPII assemblies and autophagic degradation in erythroid cells. PMID:32795391
ABHD11 maintains 2-oxoglutarate metabolism by preserving functional lipoylation of the 2-oxoglutarate dehydrogenase complex. PMID:32792488
MIC26 and MIC27 cooperate to regulate cardiolipin levels and the landscape of OXPHOS complexes. PMID:32788226
A Collision-Induced Dissociation Cleavable Isobaric Tag for Peptide Fragment Ion-Based Quantification in Proteomics. PMID:32786690
Toward a Sample Metadata Standard in Public Proteomics Repositories. PMID:32786688
Insights into Biomechanical and Proteomic Characteristics of Small Diameter Vascular Grafts Utilizing the Human Umbilical Artery. PMID:32785189
Quantitative Proteomics Comparison of Total Expressed Proteomes of Anisakis simplex Sensu Stricto, A. pegreffii, and Their Hybrid Genotype. PMID:32785065
A comprehensive CHO SWATH-MS spectral library for robust quantitative profiling of 10,000 proteins. PMID:32782267
Comprehensive plasma proteomic profiling reveals biomarkers for active tuberculosis. PMID:32780727
Type 2 diabetes risk gene Dusp8 regulates hypothalamic Jnk signaling and insulin sensitivity. PMID:32780722
Salivary proteotypes of gingivitis tolerance and resilience. PMID:32777086
Hunting monolignol transporters: membrane proteomics and biochemical transport assays with membrane vesicles of Norway spruce. PMID:32777074
FAM111 protease activity undermines cellular fitness and is amplified by gain-of-function mutations in human disease. PMID:32776417
A Multiomics Approach Unravels New Toxins With Possible In Silico Antimicrobial, Antiviral, and Antitumoral Activities in the Venom of Acanthoscurria rondoniae. PMID:32774304
Deciphering the immunogenic potential of wheat flour: a reference map of the salt-soluble proteome from the U.S. wheat Butte 86. PMID:32774173
Parallel Murine and Human Plaque Proteomics Reveals Pathways of Plaque Rupture. PMID:32762496
Data on proteome of Mycoplasma hominis cultivated with arginine or thymidine as a carbon source. PMID:32760766
PUB11-Dependent Ubiquitination of the Phospholipid Flippase ALA10 Modifies ALA10 Localization and Affects the Pool of Linolenic Phosphatidylcholine. PMID:32760418
Wheat Line "RYNO3936" Is Associated With Delayed Water Stress-Induced Leaf Senescence and Rapid Water-Deficit Stress Recovery. PMID:32760414
Symbiosis between nanohaloarchaeon and haloarchaeon is based on utilization of different polysaccharides. PMID:32759215
The AAA + ATPase valosin-containing protein (VCP)/p97/Cdc48 interaction network in Leishmania. PMID:32753747
Chemical proteomics tracks virus entry and uncovers NCAM1 as Zika virus receptor. PMID:32753727
Pilot Evaluation of Two Fasciola hepatica Biomarkers for Supporting Triclabendazole (TCBZ) Efficacy Diagnostics. PMID:32751696
AKT-dependent NOTCH3 activation drives tumor progression in a model of mesenchymal colorectal cancer. PMID:32749453
BRAHMA-interacting proteins BRIP1 and BRIP2 are core subunits of Arabidopsis SWI/SNF complexes. PMID:32747760
NuRD subunit CHD4 regulates super-enhancer accessibility in rhabdomyosarcoma and represents a general tumor dependency. PMID:32744500
Proteome dynamics analysis identifies functional roles of SDE2 and hypoxia in DNA damage response in prostate cancer cells. PMID:32743553
High-density lipoproteins are a potential therapeutic target for age-related macular degeneration. PMID:32737203
Endothelial-Derived Interleukin-1α Activates Innate Immunity by Promoting the Bactericidal Activity of Transendothelial Neutrophils. PMID:32733891
Strategies to enable large-scale proteomics for reproducible research. PMID:32732981
Autophagy deficiency promotes triple-negative breast cancer resistance to T cell-mediated cytotoxicity by blocking tenascin-C degradation. PMID:32732922
Protamine-2 Deficiency Initiates a Reactive Oxygen Species (ROS)-Mediated Destruction Cascade during Epididymal Sperm Maturation in Mice. PMID:32727081
Mitochondria and Peroxisome Remodeling across Cytomegalovirus Infection Time Viewed through the Lens of Inter-ViSTA. PMID:32726614
Optimization of skeletal protein preparation for LC-MS/MS sequencing yields additional coral skeletal proteins in Stylophora pistillata. PMID:32724895
Structural basis of CD4 downregulation by HIV-1 Nef. PMID:32719457
Piggybacking on Classical Import and Other Non-Classical Mechanisms of Nuclear Import Appear Highly Prevalent within the Human Proteome. PMID:32718019
MiT/TFE factors control ER-phagy via transcriptional regulation of FAM134B. PMID:32716134
Descriptive Proteome Analysis to Investigate Context-Dependent Treatment Responses to OXPHOS Inhibition in Colon Carcinoma Cells Grown as Monolayer and Multicellular Tumor Spheroids. PMID:32715210
Proteomic and Bioinformatic Investigations of Heat-Treated Anisakis simplex Third-Stage Larvae. PMID:32708775
The Lipid Receptor G2A (GPR132) Mediates Macrophage Migration in Nerve Injury-Induced Neuropathic Pain. PMID:32708184
Phasin interactome reveals the interplay of PhaF with the polyhydroxyalkanoate transcriptional regulatory protein PhaD in Pseudomonas putida. PMID:32705785
Ex Vivo Equine Cartilage Explant Osteoarthritis Model: A Metabolomics and Proteomics Study. PMID:32701294
Metabolic coessentiality mapping identifies C12orf49 as a regulator of SREBP processing and cholesterol metabolism. PMID:32694732
A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female mice. PMID:32694575
Genome-Scale Transcription-Translation Mapping Reveals Features of Zymomonas mobilis Transcription Units and Promoters. PMID:32694125
A quantitative thiol reactivity profiling platform to analyze redox and electrophile reactive cysteine proteomes. PMID:32690958
A mass spectrometry-based proteome map of drug action in lung cancer cell lines. PMID:32690943
Specific thylakoid protein phosphorylations are prerequisites for overwintering of Norway spruce (Picea abies) photosynthesis. PMID:32690715
Ozone-derived oxysterols impair lung macrophage phagocytosis via adduction of some phagocytosis receptors. PMID:32690608
Probing SWATH-MS as a tool for proteome level quantification in a nonmodel fish. PMID:32687632
RORα phosphorylation by casein kinase 1α as glucose signal to regulate estrogen sulfation in human liver cells. PMID:32686824
Proteomics Reveals that Methylmalonyl-CoA Mutase Modulates Cell Architecture and Increases Susceptibility to Stress. PMID:32679819
Multi-layered proteomic analyses decode compositional and functional effects of cancer mutations on kinase complexes. PMID:32678104
Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes. PMID:32674508
Optical Interrogation of Sympathetic Neuronal Effects on Macroscopic Cardiomyocyte Network Dynamics. PMID:32674058
c-Src functionality controls self-renewal and glucose metabolism in MCF7 breast cancer stem cells. PMID:32673341
Dataset of bovine mammary gland dry secretion proteome from the end of lactation through day 21 of the dry period. PMID:32671157
Regulation of stem cell function and neuronal differentiation by HERV-K via mTOR pathway. PMID:32669437
Ubiquitin ligase SMURF2 enhances epidermal growth factor receptor stability and tyrosine-kinase inhibitor resistance. PMID:32669362
Genome wide transcriptomic analysis of the soil ammonia oxidizing archaeon Nitrososphaera viennensis upon exposure to copper limitation. PMID:32665710
Structural features of bovine colostral immunoglobulin that confer proteolytic stability in a simulated intestinal fluid. PMID:32665404
Prothrombin is a binding partner of the human receptor of advanced glycation end products. PMID:32665403
A redox switch regulates the structure and function of anti-apoptotic BFL-1. PMID:32661419
Rab27a co-ordinates actin-dependent transport by controlling organelle-associated motors and track assembly proteins. PMID:32661310
Extreme Acetylation of the Cardiac Mitochondrial Proteome Does Not Promote Heart Failure. PMID:32660330
Toxicoproteomic Profiling of hPXR Transgenic Mice Treated with Rifampicin and Isoniazid. PMID:32660103
Overexpression of Sedoheptulose-1,7-Bisphosphatase Enhances Photosynthesis in Chlamydomonas reinhardtii and Has No Effect on the Abundance of Other Calvin-Benson Cycle Enzymes. PMID:32655601
Unique organization of photosystem II supercomplexes and megacomplexes in Norway spruce. PMID:32654240
Identification of host factors limiting the overexpression of recombinant Cu, Zn superoxide dismutase in Escherichia coli. PMID:32651703
Dynamic palmitoylation events following T-cell receptor signaling. PMID:32651440
Nuclear moonlighting of cytosolic glyceraldehyde-3-phosphate dehydrogenase regulates Arabidopsis response to heat stress. PMID:32651385
Optimisation of Sporosori Purification and Protein Extraction Techniques for the Biotrophic Protozoan Plant Pathogen Spongospora subterranea. PMID:32650423
Stimulation of glycolysis promotes cardiomyocyte proliferation after injury in adult zebrafish. PMID:32648304
INTS10-INTS13-INTS14 form a functional module of Integrator that binds nucleic acids and the cleavage module. PMID:32647223
Cathepsin A contributes to left ventricular remodeling by degrading extracellular superoxide dismutase in mice. PMID:32647007
Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein. PMID:32646969
The Global Phosphorylation Landscape of SARS-CoV-2 Infection. PMID:32645325
Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutinin. PMID:32644114
Alternative splicing of clathrin heavy chain contributes to the switch from coated pits to plaques. PMID:32642759
Phosphoproteomic quantitation and causal analysis reveal pathways in GPVI/ITAM-mediated platelet activation programs. PMID:32640021
Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications. PMID:32639981
Mutations in the exocyst component EXOC2 cause severe defects in human brain development. PMID:32639540
The liver matrisome - looking beyond collagens. PMID:32637906
Simple Method to Quantify Protein Abundances from 1000 Cells. PMID:32637829
CCPRD: A Novel Analytical Framework for the Comprehensive Proteomic Reference Database Construction of NonModel Organisms. PMID:32637811
Data set of the proteome of fresh and frozen thawed stallion spermatozoa. PMID:32637494
Characterization of cell-free breast cancer patient-derived scaffolds using liquid chromatography-mass spectrometry/mass spectrometry data and RNA sequencing data. PMID:32637480
Systems biology of acidophile biofilms for efficient metal extraction. PMID:32636389
Epitope Shaving Promotes Fungal Immune Evasion. PMID:32636248
C5a impairs phagosomal maturation in the neutrophil through phosphoproteomic remodeling. PMID:32634128
Identification of targets of AMPylating Fic enzymes by co-substrate-mediated covalent capture. PMID:32632184
Proteomic Profiling of Emiliania huxleyi Using a Three-Dimensional Separation Method Combined with Tandem Mass Spectrometry. PMID:32630776
Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota. PMID:32630095
Impact of Different Trace Elements on the Growth and Proteome of Two Strains of Granulicella, Class "Acidobacteriia". PMID:32625179
CASC3 promotes transcriptome-wide activation of nonsense-mediated decay by the exon junction complex. PMID:32621609
TMEM16K is an interorganelle regulator of endosomal sorting. PMID:32620747
Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of COVID-19 Infection. PMID:32619549
Shotgun proteomics analysis of SARS-CoV-2-infected cells and how it can optimize whole viral particle antigen production for vaccines. PMID:32619390
Anti-inflammatory functions of the glucocorticoid receptor require DNA binding. PMID:32619221
Profiling of myristoylation in Toxoplasma gondii reveals an N-myristoylated protein important for host cell penetration. PMID:32618271
Interaction mapping of endoplasmic reticulum ubiquitin ligases identifies modulators of innate immune signalling. PMID:32614325
Methyltransferase-like 21C (METTL21C) methylates alanine tRNA synthetase at Lys-943 in muscle tissue. PMID:32611769
RNA aptamer capture of macromolecular complexes for mass spectrometry analysis. PMID:32609809
CD209L/L-SIGN and CD209/DC-SIGN act as receptors for SARS-CoV-2. PMID:32607506
An emerging role for cyclic dinucleotide phosphodiesterase and nanoRNase activities in Mycoplasma bovis: Securing survival in cell culture. PMID:32598377
N-glycomic profiling of colorectal cancer according to tumor stage and location. PMID:32598367
The level of putative carotenoid-binding proteins determines the body color in two species of endemic Lake Baikal amphipods. PMID:32596057
Concurrent EPA and DHA Supplementation Impairs Brown Adipogenesis of C2C12 Cells. PMID:32595696
The lipid transfer properties of CETP define the concentration and composition of plasma lipoproteins. PMID:32591337
System-wide biochemical analysis reveals ozonide antimalarials initially act by disrupting Plasmodium falciparum haemoglobin digestion. PMID:32589689
Alterations in the chondrocyte surfaceome in response to pro-inflammatory cytokines. PMID:32586320
Phloem Exudate Protein Profiles during Drought and Recovery Reveal Abiotic Stress Responses in Tomato Vasculature. PMID:32586033
Topological features of integrin adhesion complexes revealed by multiplexed proximity biotinylation. PMID:32585685
Control of mRNA translation by dynamic ribosome modification. PMID:32584816
The Immunomodulatory Signature of Extracellular Vesicles From Cardiosphere-Derived Cells: A Proteomic and miRNA Profiling. PMID:32582685
Mobilization and Cellular Distribution of Phosphate in the Diatom Phaeodactylum tricornutum. PMID:32582227
Effect of Nitrosative Stress on the S-Nitroso-Proteome of Paracoccidioides brasiliensis. PMID:32582109
Immunoreactive Proteins in the Esophageal Gland Cells of Anisakis Simplex Sensu Stricto Detected by MALDI-TOF/TOF Analysis. PMID:32580523
The kinase Isr1 negatively regulates hexosamine biosynthesis in S. cerevisiae. PMID:32579556
Open Database Searching Enables the Identification and Comparison of Bacterial Glycoproteomes without Defining Glycan Compositions Prior to Searching. PMID:32576591
Top-Down Proteomics of Human Saliva Discloses Significant Variations of the Protein Profile in Patients with Mastocytosis. PMID:32575983
Pilot Multi-Omic Analysis of Human Bile from Benign and Malignant Biliary Strictures: A Machine-Learning Approach. PMID:32575903
Moyamoya disease factor RNF213 is a giant E3 ligase with a dynein-like core and a distinct ubiquitin-transfer mechanism. PMID:32573437
Tau molecular diversity contributes to clinical heterogeneity in Alzheimer's disease. PMID:32572268
Structural mechanism underlying primary and secondary coupling between GPCRs and the Gi/o family. PMID:32572026
Chimeric design of pyrrolysyl-tRNA synthetase/tRNA pairs and canonical synthetase/tRNA pairs for genetic code expansion. PMID:32572025
MtcB, a member of the MttB superfamily from the human gut acetogen Eubacterium limosum, is a cobalamin-dependent carnitine demethylase. PMID:32571881
Mitochondrial CLPP2 Assists Coordination and Homeostasis of Respiratory Complexes. PMID:32571844
Secretome Analysis of Mesenchymal Stem Cell Factors Fostering Oligodendroglial Differentiation of Neural Stem Cells In Vivo. PMID:32570968
Proteomics Profiling of KAIMRC1 in Comparison to MDA-MB231 and MCF-7. PMID:32570693
Mass Spectrometric Identification of SARS-CoV-2 Proteins from Gargle Solution Samples of COVID-19 Patients. PMID:32568543
Pulsed SILAM Reveals In Vivo Dynamics of Murine Brain Protein Translation. PMID:32566817
Holistic engineering of cell-free systems through proteome-reprogramming synthetic circuits. PMID:32561745
Mass spectrometry reveals the chemistry of formaldehyde cross-linking in structured proteins. PMID:32561732
The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics. PMID:32561711
The guanine nucleotide exchange factor VAV3 participates in ERBB4-mediated cancer cell migration. PMID:32561640
Long-Term Phenotypic and Proteomic Changes Following Vitrified Embryo Transfer in the Rabbit Model. PMID:32560425
Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea). PMID:32555742
Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping. PMID:32555463
The bovine cumulus proteome is influenced by maturation condition and maturational competence of the oocyte. PMID:32555221
The final assembly of trehalose polyphleates takes place within the outer layer of the mycobacterial cell envelope. PMID:32554804
The Insulin Receptor Adaptor IRS2 is an APC/C Substrate That Promotes Cell Cycle Protein Expression and a Robust Spindle Assembly Checkpoint. PMID:32554797
Multi-omics analysis delineates the distinct functions of sub-cellular acetyl-CoA pools in Toxoplasma gondii. PMID:32546260
Proteomic Profiling of Retinoblastoma-Derived Exosomes Reveals Potential Biomarkers of Vitreous Seeding. PMID:32545553
Proteomic analysis enables distinction of early- versus advanced-stage lung adenocarcinomas. PMID:32536039
Nuclear interacting SET domain protein 1 inactivation impairs GATA1-regulated erythroid differentiation and causes erythroleukemia. PMID:32533074
Proteomic Analysis of Myocardia Containing the Obscurin R4344Q Mutation Linked to Hypertrophic Cardiomyopathy. PMID:32528308
Ablation of the miRNA Cluster 24 Has Profound Effects on Extracellular Matrix Protein Abundance in Cartilage. PMID:32526967
NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses. PMID:32526036
CALCOCO1 acts with VAMP-associated proteins to mediate ER-phagy. PMID:32525583
FBXL4 deficiency increases mitochondrial removal by autophagy. PMID:32525278
A multi-omics analysis reveals the unfolded protein response regulon and stress-induced resistance to folate-based antimetabolites. PMID:32522993
Restriction of essential amino acids dictates the systemic metabolic response to dietary protein dilution. PMID:32518324
The Novel J-Domain Protein Mrj1 Is Required for Mitochondrial Respiration and Virulence in Cryptococcus neoformans. PMID:32518190
NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis. PMID:32513971
The effect of phytoglobin overexpression on the plant proteome during nonhost response of barley (Hordeum vulgare) to wheat powdery mildew (Blumeria graminis f. sp. tritici). PMID:32513937
The Progression of Acute Myeloid Leukemia from First Diagnosis to Chemoresistant Relapse: A Comparison of Proteomic and Phosphoproteomic Profiles. PMID:32512867
SAMHD1-mediated dNTP degradation is required for efficient DNA repair during antibody class switch recombination. PMID:32511795
Fibrillar Aβ triggers microglial proteome alterations and dysfunction in Alzheimer mouse models. PMID:32510331
Chemical Penetration Enhancers Increase Hydrogen Peroxide Uptake in C. elegans for In Vivo Fast Photochemical Oxidation of Proteins. PMID:32506919
Comparative Target Analysis of Chlorinated Biphenyl Antimicrobials Highlights MenG as a Molecular Target of Triclocarban. PMID:32503913
Use of the Polo-like kinase 4 (PLK4) inhibitor centrinone to investigate intracellular signalling networks using SILAC-based phosphoproteomics. PMID:32501498
Optimal Dissociation Methods Differ for N- and O-Glycopeptides. PMID:32500713
The Mi-2 nucleosome remodeler and the Rpd3 histone deacetylase are involved in piRNA-guided heterochromatin formation. PMID:32499524
The iron-regulated surface determinant B (IsdB) protein from Staphylococcus aureus acts as a receptor for the host protein vitronectin. PMID:32499371
Identification of TUBB2A by quantitative proteomic analysis as a novel biomarker for the prediction of distant metastatic breast cancer. PMID:32489334
Increased immunocompetence and network centrality of allogroomer workers suggest a link between individual and social immunity in honeybees. PMID:32488140
Plasma-derived extracellular vesicles from Plasmodium vivax patients signal spleen fibroblasts via NF-kB facilitating parasite cytoadherence. PMID:32487994
Master Sculptor at Work: Enteropathogenic Escherichia coli Infection Uniquely Modifies Mitochondrial Proteolysis during Its Control of Human Cell Death. PMID:32487743
The protein kinase PknB negatively regulates biosynthesis and trafficking of mycolic acids in mycobacteria. PMID:32487543
Low Doses of Arsenic in a Mouse Model of Human Exposure and in Neuronal Culture Lead to S-Nitrosylation of Synaptic Proteins and Apoptosis via Nitric Oxide. PMID:32486366
Mass Spectrometry-Based Characterization of the Virion Proteome, Phosphoproteome, and Associated Kinase Activity of Human Cytomegalovirus. PMID:32486127
Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis. PMID:32486122
Age-Related Changes in Hair Shaft Protein Profiling and Genetically Variant Peptides. PMID:32485593
Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's disease. PMID:32485097
DICER regulates the expression of major satellite repeat transcripts and meiotic chromosome segregation during spermatogenesis. PMID:32484548
Proteome and transcriptome reveal the involvement of heat shock proteins and antioxidant system in thermotolerance of Clematis florida. PMID:32483281
Long noncoding RNA SAM promotes myoblast proliferation through stabilizing Sugt1 and facilitating kinetochore assembly. PMID:32483152
Defective NADPH production in mitochondrial disease complex I causes inflammation and cell death. PMID:32483148
A Comparative Quantitative Proteomic Analysis of HCMV-Infected Cells Highlights pUL138 as a Multifunctional Protein. PMID:32481657
Airway Exosomes Released During Influenza Virus Infection Serve as a Key Component of the Antiviral Innate Immune Response. PMID:32477358
Empowering Shotgun Mass Spectrometry with 2DE: A HepG2 Study. PMID:32471280
Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification. PMID:32471074
The Mouse Heart Mitochondria N Terminome Provides Insights into ClpXP-Mediated Proteolysis. PMID:32467259
Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data. PMID:32462744
Ensuring meiotic DNA break formation in the mouse pseudoautosomal region. PMID:32461690
Acyltransferase-mediated selection of the length of the fatty acyl chain and of the acylation site governs activation of bacterial RTX toxins. PMID:32461253
Quantitative analysis of Y-Chromosome gene expression across 36 human tissues. PMID:32461223
Itch attenuates CD4 T-cell proliferation in mice by limiting WBP2 protein stability. PMID:32459862
Metabolic Insights Into Infochemicals Induced Colony Formation and Flocculation in Scenedesmus subspicatus Unraveled by Quantitative Proteomics. PMID:32457714
A novel bacterial thiosulfate oxidation pathway provides a new clue about the formation of zero-valent sulfur in deep sea. PMID:32457501
Long non-coding RNA LASSIE regulates shear stress sensing and endothelial barrier function. PMID:32457386
APN-mediated phosphorylation of BCKDK promotes hepatocellular carcinoma metastasis and proliferation via the ERK signaling pathway. PMID:32457292
Lon Protease Is Important for Growth Under Stressful Conditions and Pathogenicity of the Phytopathogen, Bacterium Dickeya solani. PMID:32456249
Integrin α3β1 on Tumor Keratinocytes Is Essential to Maintain Tumor Growth and Promotes a Tumor-Supportive Keratinocyte Secretome. PMID:32454065
Proteomics of intracellular freezing survival. PMID:32453791
Viral hijacking of the TENT4-ZCCHC14 complex protects viral RNAs via mixed tailing. PMID:32451488
The ubiquitin-conjugating enzyme UBE2K determines neurogenic potential through histone H3 in human embryonic stem cells. PMID:32451438
Identification of Tumor Antigens in the HLA Peptidome of Patient-derived Xenograft Tumors in Mouse. PMID:32451349
SERRATE interacts with the nuclear exosome targeting (NEXT) complex to degrade primary miRNA precursors in Arabidopsis. PMID:32449937
Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C. PMID:32444788
Instrument Logic Increases Identifications during Mutliplexed Translatome Measurements. PMID:32442378
Proteome Cold-Shock Response in the Extremely Acidophilic Archaeon, Cuniculiplasma divulgatum. PMID:32438588
Changes in the Oligodendrocyte Progenitor Cell Proteome with Ageing. PMID:32434922
Cdh1-APC Regulates Protein Synthesis and Stress Granules in Neurons through an FMRP-Dependent Mechanism. PMID:32434143
TASL is the SLC15A4-associated adaptor for IRF5 activation by TLR7-9. PMID:32433612
Overcoming off-targets: assessing Western blot signals for Bcnt/Cfdp1, a tentative component of the chromatin remodeling complex. PMID:32432658
Single or Combined Dietary Supply of Psidium guajava and Phyllanthus amarus Extracts Differentially Modulate Immune Responses and Liver Proteome in Striped Catfish (Pangasianodon hyphophthalmus). PMID:32431710
Dynamic Transcriptomic and Phosphoproteomic Analysis During Cell Wall Stress in Aspergillus nidulans. PMID:32430394
Characterising ISWI chromatin remodeler in Trypanosoma cruzi. PMID:32428081
RasGRP1 is a causal factor in the development of l-DOPA-induced dyskinesia in Parkinson's disease. PMID:32426479
PolySTest: Robust Statistical Testing of Proteomics Data with Missing Values Improves Detection of Biologically Relevant Features. PMID:32424025
Che-1/AATF binds to RNA polymerase I machinery and sustains ribosomal RNA gene transcription. PMID:32421830
TMT-based quantitative proteomics analysis reveals the attenuated replication mechanism of Newcastle disease virus caused by nuclear localization signal mutation in viral matrix protein. PMID:32420802
Toward a Universal Sample Preparation Method for Denaturing Top-Down Proteomics of Complex Proteomes. PMID:32419461
Comprehensive Comparison of Clinically Relevant Grain Proteins in Modern and Traditional Bread Wheat Cultivars. PMID:32414116
Glycopeptide Biomarkers in Serum Haptoglobin for Hepatocellular Carcinoma Detection in Patients with Nonalcoholic Steatohepatitis. PMID:32412768
Proteolysis of Gingival Keratinocyte Cell Surface Proteins by Gingipains Secreted From Porphyromonas gingivalis - Proteomic Insights Into Mechanisms Behind Tissue Damage in the Diseased Gingiva. PMID:32411104
Differential responses to kinase inhibition in FGFR2-addicted triple negative breast cancer cells: a quantitative phosphoproteomics study. PMID:32409632
Exercise-dependent increases in protein synthesis are accompanied by chromatin modifications and increased MRTF-SRF signalling. PMID:32408395
Proteomics of SARS-CoV-2-infected host cells reveals therapy targets. PMID:32408336
Exercise training reverses cancer-induced oxidative stress and decrease in muscle COPS2/TRIP15/ALIEN. PMID:32408015
The CEP5 Peptide Promotes Abiotic Stress Tolerance, As Revealed by Quantitative Proteomics, and Attenuates the AUX/IAA Equilibrium in Arabidopsis. PMID:32404488
Protease-resistant streptavidin for interaction proteomics. PMID:32400114
Platform independent protein-based cell-of-origin subtyping of diffuse large B-cell lymphoma in formalin-fixed paraffin-embedded tissue. PMID:32398793
Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene. PMID:32398368
Urine Proteomic Study in OAB Patients-Preliminary Report. PMID:32397227
Plasma-Derived Extracellular Vesicle Phosphoproteomics through Chemical Affinity Purification. PMID:32396726
Isobaric Labeling Strategy Utilizing 4-Plex N,N-Dimethyl Leucine (DiLeu) Tags Reveals Proteomic Changes Induced by Chemotherapy in Cerebrospinal Fluid of Children with B-Cell Acute Lymphoblastic Leukemia. PMID:32396724
Dataset on interactors of the Arabidopsis thaliana Plant Natriuretic Peptide (AtPNP-A) determined by mass spectrometry. PMID:32395580
Retargeting from the CR3 to the LFA-1 receptor uncovers the adenylyl cyclase enzyme-translocating segment of Bordetella adenylate cyclase toxin. PMID:32393579
Heterogeneity of proteome dynamics between connective tissue phases of adult tendon. PMID:32393437
Insights into herpesvirus assembly from the structure of the pUL7:pUL51 complex. PMID:32391791
Lactonase Specificity Is Key to Quorum Quenching in Pseudomonas aeruginosa. PMID:32390993
An Azidoribose Probe to Track Ketoamine Adducts in Histone Ribose Glycation. PMID:32390412
p85β regulates autophagic degradation of AXL to activate oncogenic signaling. PMID:32385243
Differences and commonalities in plasma membrane recruitment of the two morphogenetically distinct retroviruses HIV-1 and MMTV. PMID:32385109
Regulation of mRNA export through API5 and nuclear FGF2 interaction. PMID:32383752
Discovery of Widespread Host Protein Interactions with the Pre-replicated Genome of CHIKV Using VIR-CLASP. PMID:32380061
Impact of Increased FUT8 Expression on the Extracellular Vesicle Proteome in Prostate Cancer Cells. PMID:32378902
Cystatin B is essential for proliferation and interneuron migration in individuals with EPM1 epilepsy. PMID:32378798
Cryo-electron microscopy reveals two distinct type IV pili assembled by the same bacterium. PMID:32376942
The omics discovery REST interface. PMID:32374843
Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesis. PMID:32374750
PaACL silencing accelerates flower senescence and changes the proteome to maintain metabolic homeostasis in Petunia hybrida. PMID:32364241
Protein markers for Candida albicans EVs include claudin-like Sur7 family proteins. PMID:32363014
Integrative Proteome and Acetylome Analyses of Murine Responses to Cryptococcus neoformans Infection. PMID:32362878
Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients. PMID:32358557
Immunopeptidomic Analysis Reveals That Deamidated HLA-bound Peptides Arise Predominantly from Deglycosylated Precursors. PMID:32357974
The cooperative action of CSB, CSA, and UVSSA target TFIIH to DNA damage-stalled RNA polymerase II. PMID:32355176
Suramin exposure alters cellular metabolism and mitochondrial energy production in African trypanosomes. PMID:32354742
Actinobacterial Degradation of 2-Hydroxyisobutyric Acid Proceeds via Acetone and Formyl-CoA by Employing a Thiamine-Dependent Lyase Reaction. PMID:32351493
Region-Specific Proteome Changes of the Intestinal Epithelium during Aging and Dietary Restriction. PMID:32348758
Normal murine respiratory tract has its mucus concentrated in clouds based on the Muc5b mucin. PMID:32348677
The DNA Sensor cGAS is Decorated by Acetylation and Phosphorylation Modifications in the Context of Immune Signaling. PMID:32345711
A Comprehensive Proteomic and Phosphoproteomic Analysis of Retinal Pigment Epithelium Reveals Multiple Pathway Alterations in Response to the Inflammatory Stimuli. PMID:32344885
Comparative proteomics of three Giardia lamblia strains: investigation of antigenic variation in the post-genomic era. PMID:32338227
Methylation of Salmonella Typhimurium flagella promotes bacterial adhesion and host cell invasion. PMID:32332720
Flow-induced Reorganization of Laminin-integrin Networks Within the Endothelial Basement Membrane Uncovered by Proteomics. PMID:32332107
A Cross-linking Mass Spectrometry Approach Defines Protein Interactions in Yeast Mitochondria. PMID:32332106
S-Glutathionylation of human inducible Hsp70 reveals a regulatory mechanism involving the C-terminal α-helical lid. PMID:32332101
Proteomic profiling analysis of postmenopausal osteoporosis and osteopenia identifies potential proteins associated with low bone mineral density. PMID:32328356
Bump-and-Hole Engineering Identifies Specific Substrates of Glycosyltransferases in Living Cells. PMID:32325029
The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis. PMID:32321914
Partial loss of CFIm25 causes learning deficits and aberrant neuronal alternative polyadenylation. PMID:32319885
Selective Maleylation-Directed Isobaric Peptide Termini Labeling for Accurate Proteome Quantification. PMID:32319746
Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance. PMID:32319721
Cytochrome c M Decreases Photosynthesis under Photomixotrophy in Synechocystis sp. PCC 6803. PMID:32317358
Potential Role of Circulating Endoglin in Hypertension via the Upregulated Expression of BMP4. PMID:32316263
Plasticity of nuclear and cytoplasmic stress responses of RNA-binding proteins. PMID:32313943
Hemocyte phagosomal proteome is dynamically shaped by cytoskeleton remodeling and interorganellar communication with endoplasmic reticulum during phagocytosis in a marine invertebrate, Crassostrea gigas. PMID:32313134
Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast. PMID:32312967
Inhibition of collagen XI alpha 1-induced fatty acid oxidation triggers apoptotic cell death in cisplatin-resistant ovarian cancer. PMID:32312965
Tumor-associated macrophages promote ovarian cancer cell migration by secreting transforming growth factor beta induced (TGFBI) and tenascin C. PMID:32312959
MASTL promotes cell contractility and motility through kinase-independent signaling. PMID:32311005
Serial in-solution digestion protocol for mass spectrometry-based glycomics and proteomics analysis. PMID:32309832
Structure-function analyses of the G729R 2-oxoadipate dehydrogenase genetic variant associated with a disorder of l-lysine metabolism. PMID:32303640
The SHCA adapter protein cooperates with lipoma-preferred partner in the regulation of adhesion dynamics and invadopodia formation. PMID:32299913
Identifying nucleic acid-associated proteins in Mycobacterium smegmatis by mass spectrometry-based proteomics. PMID:32293251
Antagonism of PP2A is an independent and conserved function of HIV-1 Vif and causes cell cycle arrest. PMID:32292164
Characterisation of the biochemical and cellular roles of native and pathogenic amelogenesis imperfecta mutants of FAM83H. PMID:32289446
Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome. PMID:32286305
Lipid moieties of Mycoplasma pneumoniae lipoproteins are the causative factor of vaccine-enhanced disease. PMID:32284882
Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine. PMID:32284825
An exported kinase family mediates species-specific erythrocyte remodelling and virulence in human malaria. PMID:32284562
Olaparib-Based Photoaffinity Probes for PARP-1 Detection in Living Cells. PMID:32282108
Functional changes of the liver in the absence of growth hormone (GH) action - Proteomic and metabolomic insights from a GH receptor deficient pig model. PMID:32277923
Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics. PMID:32277127
ARID1A Regulates Transcription and the Epigenetic Landscape via POLE and DMAP1 while ARID1A Deficiency or Pharmacological Inhibition Sensitizes Germ Cell Tumor Cells to ATR Inhibition. PMID:32272809
Identifying Sialylation Linkages at the Glycopeptide Level by Glycosyltransferase Labeling Assisted Mass Spectrometry (GLAMS). PMID:32271005
Larval Geoduck (Panopea generosa) Proteomic Response to Ciliates. PMID:32269285
Autophosphorylation at serine 166 regulates RIP kinase 1-mediated cell death and inflammation. PMID:32269263
Primary Metabolism Is Distinctly Modulated by Plant Resistance Inducers in Coffea arabica Leaves Infected by Hemileia vastatrix. PMID:32265962
Response of Midgut Trypsin- and Chymotrypsin-Like Proteases of Helicoverpa armigera Larvae Upon Feeding With Peanut BBI: Biochemical and Biophysical Characterization of PnBBI. PMID:32265951
Exercise Training in Obese Rats Does Not Induce Browning at Thermoneutrality and Induces a Muscle-Like Signature in Brown Adipose Tissue. PMID:32265830
Genetic Deletion of Zebrafish Rab28 Causes Defective Outer Segment Shedding, but Not Retinal Degeneration. PMID:32258030
Differential Proteomic Analysis of Chinese Giant Salamander Liver in Response to Fasting. PMID:32256382
Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis. PMID:32252825
Fast and Highly Efficient Affinity Enrichment of Azide-A-DSBSO Cross-Linked Peptides. PMID:32250121
Systems Analysis of NADH Dehydrogenase Mutants Reveals Flexibility and Limits of Pseudomonas taiwanensis VLB120's Metabolism. PMID:32245760
A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics. PMID:32243168
The nanophthalmos protein TMEM98 inhibits MYRF self-cleavage and is required for eye size specification. PMID:32236127
Immediate Adaptation Analysis Implicates BCL6 as an EGFR-TKI Combination Therapy Target in NSCLC. PMID:32234966
Natural-Killer-Derived Extracellular Vesicles: Immune Sensors and Interactors. PMID:32231660
Proteomics-Based Characterization of miR-574-5p Decoy to CUGBP1 Suggests Specificity for mPGES-1 Regulation in Human Lung Cancer Cells. PMID:32231562
Integrative -omics and HLA-ligandomics analysis to identify novel drug targets for ccRCC immunotherapy. PMID:32228647
Optimization of Synovial Fluid Collection and Processing for NMR Metabolomics and LC-MS/MS Proteomics. PMID:32227958
Acute experimental infection of bats and ferrets with Hendra virus: Insights into the early host response of the reservoir host and susceptible model species. PMID:32226041
Enhancing Top-Down Proteomics Data Analysis by Combining Deconvolution Results through a Machine Learning Strategy. PMID:32223200
Calretinin is a novel candidate marker for adverse ovarian effects of early life exposure to mixtures of endocrine disruptors in the rat. PMID:32221642
CD4+ Th immunogenicity of the Ascaris spp. secreted products. PMID:32218997
Building blocks are synthesized on demand during the yeast cell cycle. PMID:32213592
Loss of the Periplasmic Chaperone Skp and Mutations in the Efflux Pump AcrAB-TolC Play a Role in Acquired Resistance to Antimicrobial Peptides in Salmonella typhimurium. PMID:32210923
ECE2 regulates neurogenesis and neuronal migration during human cortical development. PMID:32207244
IL-23 signaling regulation of pro-inflammatory T-cell migration uncovered by phosphoproteomics. PMID:32203518
Distinct roles for H4 and H2A.Z acetylation in RNA transcription in African trypanosomes. PMID:32198348
Protein modification with ISG15 blocks coxsackievirus pathology by antiviral and metabolic reprogramming. PMID:32195343
Exploring the HeLa Dark Mitochondrial Proteome. PMID:32195257
Cardiopoietic stem cell therapy restores infarction-altered cardiac proteome. PMID:32194990
Photoprotective Acclimation of the Arabidopsis thaliana Leaf Proteome to Fluctuating Light. PMID:32194630
Proteome of a Moraxella catarrhalis Strain under Iron-Restricted Conditions. PMID:32193234
Proteomic Analysis of Proteins Responsive to Drought and Low Temperature Stress in a Hard Red Spring Wheat Cultivar. PMID:32192150
Membrane Modulation of Super-Secreting "midiBacillus" Expressing the Major Staphylococcus aureus Antigen - A Mass-Spectrometry-Based Absolute Quantification Approach. PMID:32185169
Rhein, a novel Histone Deacetylase (HDAC) inhibitor with antifibrotic potency in human myocardial fibrosis. PMID:32184434
Absolute yeast mitochondrial proteome quantification reveals trade-off between biosynthesis and energy generation during diauxic shift. PMID:32184324
Proteomic Adaptation of Streptococcus pneumoniae to the Human Antimicrobial Peptide LL-37. PMID:32183275
Multi-omic analysis of gametogenesis reveals a novel signature at the promoters and distal enhancers of active genes. PMID:32182340
In-depth proteome analysis of more than 12,500 proteins in buffalo mammary epithelial cell line identifies protein signatures for active proliferation and lactation. PMID:32179766
Common and Strain-Specific Post-Translational Modifications of the Potyvirus Plum pox virus Coat Protein in Different Hosts. PMID:32178365
The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis. PMID:32176689
Isoform-resolved correlation analysis between mRNA abundance regulation and protein level degradation. PMID:32175694
Cholesteryl α-D-glucoside 6-acyltransferase enhances the adhesion of Helicobacter pylori to gastric epithelium. PMID:32170208
Plant Raf-like kinases regulate the mRNA population upstream of ABA-unresponsive SnRK2 kinases under drought stress. PMID:32170072
A signaling hub of insulin receptor, dystrophin glycoprotein complex and plakoglobin regulates muscle size. PMID:32170063
Fast and Robust Proteome Screening Platform Identifies Neutrophil Extracellular Trap Formation in the Lung in Response to Cobalt Ferrite Nanoparticles. PMID:32167280
Impact of the gut microbiota on the m6A epitranscriptome of mouse cecum and liver. PMID:32165618
Metabolic Rearrangements Causing Elevated Proline and Polyhydroxybutyrate Accumulation During the Osmotic Adaptation Response of Bacillus megaterium. PMID:32161752
Reducing the Immunogenic Potential of Wheat Flour: Silencing of Alpha Gliadin Genes in a U.S. Wheat Cultivar. PMID:32161604
Crystal structure of a lipin/Pah phosphatidic acid phosphatase. PMID:32161260
Pharmacological induction of selective endoplasmic reticulum retention as a strategy for cancer therapy. PMID:32161259
Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease. PMID:32160399
Alterations of redox and iron metabolism accompany the development of HIV latency. PMID:32157726
Rpn4 and proteasome-mediated yeast resistance to ethanol includes regulation of autophagy. PMID:32157425
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes. PMID:32157095
MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics. PMID:32156793
TAp63-Regulated miRNAs Suppress Cutaneous Squamous Cell Carcinoma through Inhibition of a Network of Cell-Cycle Genes. PMID:32156775
Proteome data of serum samples from patients with schizophrenia. PMID:32154357
Paradoxical mitotic exit induced by a small molecule inhibitor of APC/CCdc20. PMID:32152539
Histone variant H3.3 residue S31 is essential for Xenopus gastrulation regardless of the deposition pathway. PMID:32152320
TEX264 coordinates p97- and SPRTN-mediated resolution of topoisomerase 1-DNA adducts. PMID:32152270
AIG1 and ADTRP are endogenous hydrolases of fatty acid esters of hydroxy fatty acids (FAHFAs) in mice. PMID:32152231
The heme-regulatory motifs of heme oxygenase-2 contribute to the transfer of heme to the catalytic site for degradation. PMID:32152224
Phosphorylation switches protein disulfide isomerase activity to maintain proteostasis and attenuate ER stress. PMID:32149426
CLUH granules coordinate translation of mitochondrial proteins with mTORC1 signaling and mitophagy. PMID:32149416
Synaptamide activates the adhesion GPCR GPR110 (ADGRF1) through GAIN domain binding. PMID:32144388
Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. PMID:32144273
Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides. PMID:32141294
The Streptomyces coelicolor Small ORF trpM Stimulates Growth and Morphological Development and Exerts Opposite Effects on Actinorhodin and Calcium-Dependent Antibiotic Production. PMID:32140146
Comparative Proteomics of Extended-Spectrum Cephalosporin-Resistant Neisseria gonorrhoeae Isolates Demonstrates Altered Protein Synthesis, Metabolism, Substance Transport, and Membrane Permeability. PMID:32140142
Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy. PMID:32138239
Histone H4 dosage modulates DNA damage response in the pathogenic yeast Candida glabrata via homologous recombination pathway. PMID:32134928
The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm. PMID:32132673
Automated sample preparation with SP3 for low-input clinical proteomics. PMID:32129943
Phosphorylation of multiple proteins involved in ciliogenesis by Tau Tubulin kinase 2. PMID:32129703
Reciprocal transplantation of the heterotrophic coral Tubastraea coccinea (Scleractinia: Dendrophylliidae) between distinct habitats did not alter its venom toxin composition. PMID:32128117
Plasmodium chaperonin TRiC/CCT identified as a target of the antihistamine clemastine using parallel chemoproteomic strategy. PMID:32127489
Systematic Localization of Escherichia coli Membrane Proteins. PMID:32127419
Quantitative proteomics to study aging in rabbit liver. PMID:32126221
Cyp2c44 regulates prostaglandin synthesis, lymphangiogenesis, and metastasis in a mouse model of breast cancer. PMID:32123095
Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles. PMID:32119684
The microtubule-associated histone methyltransferase SET8, facilitated by transcription factor LSF, methylates α-tubulin. PMID:32111740
The tetraspanin Tspan15 is an essential subunit of an ADAM10 scissor complex. PMID:32111735
A Quantitative Tissue-Specific Landscape of Protein Redox Regulation during Aging. PMID:32109415
Re-Evaluating the Mechanism of Action of α,β-Unsaturated Carbonyl DUB Inhibitors b-AP15 and VLX1570: A Paradigmatic Example of Unspecific Protein Cross-linking with Michael Acceptor Motif-Containing Drugs. PMID:32109059
Identification of Novel Prognosis and Prediction Markers in Advanced Prostate Cancer Tissues Based on Quantitative Proteomics. PMID:32108042
Chemical Genetics of AGC-kinases Reveals Shared Targets of Ypk1, Protein Kinase A and Sch9. PMID:32102971
A rare codon-based translational program of cell proliferation. PMID:32102681
The Hypoxic Proteome and Metabolome of Barley (Hordeum vulgare L.) with and without Phytoglobin Priming. PMID:32102473
Combination of chemotherapy and PD-1 blockade induces T cell responses to tumor non-mutated neoantigens. PMID:32099064
Interactome of vertebrate GAF/ThPOK reveals its diverse functions in gene regulation and DNA repair. PMID:32098917
Depletion of histone methyltransferase KMT9 inhibits lung cancer cell proliferation by inducing non-apoptotic cell death. PMID:32095117
Functional omics analyses reveal only minor effects of microRNAs on human somatic stem cell differentiation. PMID:32094412
Imipridone Anticancer Compounds Ectopically Activate the ClpP Protease and Represent a New Scaffold for Antibiotic Development. PMID:32094149
Cytokine-Induced Guanylate Binding Protein 1 (GBP1) Release from Human Ovarian Cancer Cells. PMID:32093058
Quantitative proteomics analysis reveals important roles of N-glycosylation on ER quality control system for development and pathogenesis in Magnaporthe oryzae. PMID:32092131
Identification of osteolineage cell-derived extracellular vesicle cargo implicated in hematopoietic support. PMID:32086861
Conformation-specific inhibitors of activated Ras GTPases reveal limited Ras dependency of patient-derived cancer organoids. PMID:32086379
Hat1-Dependent Lysine Acetylation Targets Diverse Cellular Functions. PMID:32081014
The Relevance of Thimet Oligopeptidase in the Regulation of Energy Metabolism and Diet-Induced Obesity. PMID:32079362
Pro-inflammatory activation following demyelination is required for myelin clearance and oligodendrogenesis. PMID:32078678
The Secretome Profiling of a Pediatric Airway Epithelium Infected with hRSV Identified Aberrant Apical/Basolateral Trafficking and Novel Immune Modulating (CXCL6, CXCL16, CSF3) and Antiviral (CEACAM1) Proteins. PMID:32075873
hipBA toxin-antitoxin systems mediate persistence in Caulobacter crescentus. PMID:32071324
Structural insights into the main S-layer unit of Deinococcus radiodurans reveal a massive protein complex with porin-like features. PMID:32071085
Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa. PMID:32070416
Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes. PMID:32068945
FANCD2-FANCI is a clamp stabilized on DNA by monoubiquitination of FANCD2 during DNA repair. PMID:32066963
A genetic analysis reveals novel histone residues required for transcriptional reprogramming upon stress. PMID:32064518
CEP44 ensures the formation of bona fide centriole wall, a requirement for the centriole-to-centrosome conversion. PMID:32060285
Inference of Multisite Phosphorylation Rate Constants and Their Modulation by Pathogenic Mutations. PMID:32059766
Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality. PMID:32059637
Responses of Acidobacteria Granulicella sp. WH15 to High Carbon Revealed by Integrated Omics Analyses. PMID:32059463
Comprehensive Proteomic Characterization Reveals Subclass-Specific Molecular Aberrations within Triple-negative Breast Cancer. PMID:32058975
Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth. PMID:32054912
Cross-talks of glycosylphosphatidylinositol biosynthesis with glycosphingolipid biosynthesis and ER-associated degradation. PMID:32054864
Insights into the Functions of eIF4E-Biding Motif of VPg in Potato Virus A Infection. PMID:32053987
Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker. PMID:32051233
Quantitative Proteomics to Identify Nuclear RNA-Binding Proteins of Malat1. PMID:32050583
Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding. PMID:32049966
Nucleolar localization of RAG1 modulates V(D)J recombination activity. PMID:32047031
Role for ribosome-associated quality control in sampling proteins for MHC class I-mediated antigen presentation. PMID:32047030
Proteome Analysis of Isolated Podocytes Reveals Stress Responses in Glomerular Sclerosis. PMID:32047005
Predicting Electrophoretic Mobility of Proteoforms for Large-Scale Top-Down Proteomics. PMID:32043875
Opposing effects of polysulfides and thioredoxin on apoptosis through caspase persulfidation. PMID:32041780
Respiratory chain signalling is essential for adaptive remodelling following cardiac ischaemia. PMID:32040259
Structural Basis for Lipid Binding and Function by an Evolutionarily Conserved Protein, Serum Amyloid A. PMID:32035904
Assessment of separation methods for extracellular vesicles from human and mouse brain tissues and human cerebrospinal fluids. PMID:32035230
Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss. PMID:32033593
Defining the Adult Neural Stem Cell Niche Proteome Identifies Key Regulators of Adult Neurogenesis. PMID:32032526
Posttranslational Modifications Mediate the Structural Diversity of Tauopathy Strains. PMID:32032505
A synthetic peptide library for benchmarking crosslinking-mass spectrometry search engines for proteins and protein complexes. PMID:32029734
Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags. PMID:32027144
Listeria monocytogenes Exploits Mitochondrial Contact Site and Cristae Organizing System Complex Subunit Mic10 To Promote Mitochondrial Fragmentation and Cellular Infection. PMID:32019800
Combined Proteomics and Metabolism Analysis Unravels Prominent Roles of Antioxidant System in the Prevention of Alfalfa (Medicago sativa L.) against Salt Stress. PMID:32019165
IL8 and PMA Trigger the Regulation of Different Biological Processes in Granulocyte Activation. PMID:32010136
How to Cope With Heavy Metal Ions: Cellular and Proteome-Level Stress Response to Divalent Copper and Nickel in Halobacterium salinarum R1 Planktonic and Biofilm Cells. PMID:32010107
The tight junction protein TJP1 regulates the feeding-modulated hepatic circadian clock. PMID:32001717
A LysR-Type Transcriptional Regulator LcrX Is Involved in Virulence, Biofilm Formation, Swimming Motility, Siderophore Secretion, and Growth in Sugar Sources in Xanthomonas axonopodis Pv. glycines. PMID:31998344
Metabolic syndrome diminishes insulin-induced Akt activation and causes a redistribution of Akt-interacting proteins in cardiomyocytes. PMID:31995605
Biomarker discovery for chronic liver diseases by multi-omics - a preclinical case study. PMID:31992752
Cuticular Structure Proteomics in the Pea Aphid Acyrthosiphon pisum Reveals New Plant Virus Receptor Candidates at the Tip of Maxillary Stylets. PMID:31991085
Dynamic response in the larval geoduck (Panopea generosa) proteome to elevated pCO2. PMID:31988722
Somatic gene editing ameliorates skeletal and cardiac muscle failure in pig and human models of Duchenne muscular dystrophy. PMID:31988462
A precisely positioned MED12 activation helix stimulates CDK8 kinase activity. PMID:31988137
Endothelial progeria induces adipose tissue senescence and impairs insulin sensitivity through senescence associated secretory phenotype. PMID:31980643
The Antimalarial Natural Product Salinipostin A Identifies Essential α/β Serine Hydrolases Involved in Lipid Metabolism in P. falciparum Parasites. PMID:31978322
EPIFANY: A Method for Efficient High-Confidence Protein Inference. PMID:31975601
Mechanism of adrenergic CaV1.2 stimulation revealed by proximity proteomics. PMID:31969708
Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1. PMID:31964861
Staphylococcus saprophyticus Proteomic Analyses Elucidate Differences in the Protein Repertories among Clinical Strains Related to Virulence and Persistence. PMID:31963821
A Combined Proteomics, Metabolomics and In Vivo Analysis Approach for the Characterization of Probiotics in Large-Scale Production. PMID:31963736
A human ciliopathy reveals essential functions for NEK10 in airway mucociliary clearance. PMID:31959991
Targeting of EGFR by a combination of antibodies mediates unconventional EGFR trafficking and degradation. PMID:31959764
Identification of dual histone modification-binding protein interaction by combining mass spectrometry and isothermal titration calorimetric analysis. PMID:31956440
Quantitative Proteomics of the Endothelial Secretome Identifies RC0497 as Diagnostic of Acute Rickettsial Spotted Fever Infections. PMID:31955791
Bacterial Hsp70 resolves misfolded states and accelerates productive folding of a multi-domain protein. PMID:31953415
Dynamic post-translational modification profiling of Mycobacterium tuberculosis-infected primary macrophages. PMID:31951200
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. PMID:31950984
Gigaxonin glycosylation regulates intermediate filament turnover and may impact giant axonal neuropathy etiology or treatment. PMID:31944090
Combined Expression of Plasma Thrombospondin-2 and CA19-9 for Diagnosis of Pancreatic Cancer and Distal Cholangiocarcinoma: A Proteome Approach. PMID:31943574
Identification of Chloroplast Envelope Proteins with Critical Importance for Cold Acclimation. PMID:31932409
Rhomboid intramembrane protease YqgP licenses bacterial membrane protein quality control as adaptor of FtsH AAA protease. PMID:31930742
FAM134B oligomerization drives endoplasmic reticulum membrane scission for ER-phagy. PMID:31930741
Proteomic Analysis of MYB-Regulated Secretome Identifies Functional Pathways and Biomarkers: Potential Pathobiological and Clinical Implications. PMID:31928012
Proteomic Analysis of CSF from Patients with Leptomeningeal Melanoma Metastases Identifies Signatures Associated with Disease Progression and Therapeutic Resistance. PMID:31924735
Multiple Layers of Phospho-Regulation Coordinate Metabolism and the Cell Cycle in Budding Yeast. PMID:31921850
Adipocyte extracellular vesicles carry enzymes and fatty acids that stimulate mitochondrial metabolism and remodeling in tumor cells. PMID:31919869
Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS. PMID:31919466
Architecture of The Human Ape1 Interactome Defines Novel Cancers Signatures. PMID:31913336
Treacle controls the nucleolar response to rDNA breaks via TOPBP1 recruitment and ATR activation. PMID:31913317
Improved Single-Cell Proteome Coverage Using Narrow-Bore Packed NanoLC Columns and Ultrasensitive Mass Spectrometry. PMID:31913019
Twin enzymes, divergent control: The cholesterogenic enzymes DHCR14 and LBR are differentially regulated transcriptionally and post-translationally. PMID:31911440
The plastidial Arabidopsis thaliana NFU1 protein binds and delivers [4Fe-4S] clusters to specific client proteins. PMID:31911438
Proteome dataset of mouse macrophage cell line infected with tick-borne encephalitis virus. PMID:31909125
Disrupted ER membrane protein complex-mediated topogenesis drives congenital neural crest defects. PMID:31904590
Cell-specific non-canonical amino acid labelling identifies changes in the de novo proteome during memory formation. PMID:31904341
Quantitative Proteomics Reveal an Altered Pattern of Protein Expression in Brain Tissue from Mice Lacking GPR37 and GPR37L1. PMID:31903766
Polar recruitment of RLD by LAZY1-like protein during gravity signaling in root branch angle control. PMID:31900388
Mass spectrometry-based selectivity profiling identifies a highly selective inhibitor of the kinase MELK that delays mitotic entry in cancer cells. PMID:31896573
Development of a Retinal-Based Probe for the Profiling of Retinaldehyde Dehydrogenases in Cancer Cells. PMID:31893226
LINE-1 ORF2p expression is nearly imperceptible in human cancers. PMID:31892958
A sulfur-containing volatile emitted by potato-associated bacteria confers protection against late blight through direct anti-oomycete activity. PMID:31889050
Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows. PMID:31887207
R2-P2 rapid-robotic phosphoproteomics enables multidimensional cell signaling studies. PMID:31885202
Quantitative Proteome Responses to Oncolytic Reovirus in GM-CSF- and M-CSF-Differentiated Bone Marrow-Derived Cells. PMID:31884793
Fetal androgen exposure is a determinant of adult male metabolic health. PMID:31882954
Analysis of Soybean Long Non-Coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts. PMID:31882456
Pressure Cycling Technology Assisted Mass Spectrometric Quantification of Gingival Tissue Reveals Proteome Dynamics during the Initiation and Progression of Inflammatory Periodontal Disease. PMID:31881116
Absolute proteomic quantification reveals design principles of sperm flagellar chemosensation. PMID:31880004
Signature-Ion-Triggered Mass Spectrometry Approach Enabled Discovery of N- and O-Linked Glycosylated Neuropeptides in the Crustacean Nervous System. PMID:31875397
Lymphatic remodelling in response to lymphatic injury in the hind limbs of sheep. PMID:31873209
Identification of HCMV-derived T cell epitopes in seropositive individuals through viral deletion models. PMID:31869419
ODF1, sperm flagelar protein is expressed in kidney collecting ducts of rats. PMID:31867458
Label-Free Proteomic Approach to Study the Non-lethal Effects of Silver Nanoparticles on a Gut Bacterium. PMID:31866956
Pathogenic Bi-allelic Mutations in NDUFAF8 Cause Leigh Syndrome with an Isolated Complex I Deficiency. PMID:31866046
A mitochondrial megachannel resides in monomeric F1FO ATP synthase. PMID:31862883
Comparative profiling of the synaptic proteome from Alzheimer's disease patients with focus on the APOE genotype. PMID:31862015
Analog-sensitive cell line identifies cellular substrates of CDK9. PMID:31857848
Lipid droplet-associated kinase STK25 regulates peroxisomal activity and metabolic stress response in steatotic liver. PMID:31857389
NIMA-related kinase 9-mediated phosphorylation of the microtubule-associated LC3B protein at Thr-50 suppresses selective autophagy of p62/sequestosome 1. PMID:31857374
Prolonged fasting followed by refeeding modifies proteome profile and parvalbumin expression in the fast-twitch muscle of pacu (Piaractus mesopotamicus). PMID:31856193
Dynamic Growth and Shrinkage of the Salmonella-Containing Vacuole Determines the Intracellular Pathogen Niche. PMID:31851926
TULIP2: An Improved Method for the Identification of Ubiquitin E3-Specific Targets. PMID:31850303
Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands. PMID:31848261
The Peptide Venom Composition of the Fierce Stinging Ant Tetraponera aethiops (Formicidae: Pseudomyrmecinae). PMID:31847368
Analysis of EYA3 Phosphorylation by Src Kinase Identifies Residues Involved in Cell Proliferation. PMID:31847183
Polarly Localized EccE1 Is Required for ESX-1 Function and Stabilization of ESX-1 Membrane Proteins in Mycobacterium tuberculosis. PMID:31843799
MaXLinker: Proteome-wide Cross-link Identifications with High Specificity and Sensitivity. PMID:31839598
Multi-omic Characterization of the Mode of Action of a Potent New Antimalarial Compound, JPC-3210, Against Plasmodium falciparum. PMID:31836637
Activation of Hypoxia-Inducible Factor Signaling Modulates the RNA Protein Interactome in Caenorhabditis elegans. PMID:31835171
High CD206 levels in Hodgkin lymphoma-educated macrophages are linked to matrix-remodeling and lymphoma dissemination. PMID:31825135
Proteomic Changes in Human Sperm During Sequential in vitro Capacitation and Acrosome Reaction. PMID:31824947
Cerebrospinal Fluid-Derived Microvesicles From Sleeping Sickness Patients Alter Protein Expression in Human Astrocytes. PMID:31824868
Metabolic rewiring of the hypertensive kidney. PMID:31822592
The deubiquitinase USP7 stabilizes Maf proteins to promote myeloma cell survival. PMID:31822558
Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α. PMID:31812349
Identification of potential chemosignals in the European water vole Arvicola terrestris. PMID:31804568
A Combined Mass Spectrometry and Data Integration Approach to Predict the Mitochondrial Poly(A) RNA Interacting Proteome. PMID:31803741
An in silico-in vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients. PMID:31803176
A Non-interventional Clinical Trial Assessing Immune Responses After Radiofrequency Ablation of Liver Metastases From Colorectal Cancer. PMID:31803175
Extensive protein S-nitrosylation associated with human pancreatic ductal adenocarcinoma pathogenesis. PMID:31801946
Optimized Workflow for Multiplexed Phosphorylation Analysis of TMT-Labeled Peptides Using High-Field Asymmetric Waveform Ion Mobility Spectrometry. PMID:31799850
Ribosomal protein gene RPL9 variants can differentially impair ribosome function and cellular metabolism. PMID:31799629
The GID ubiquitin ligase complex is a regulator of AMPK activity and organismal lifespan. PMID:31795790
Phenotypic proteomic profiling identifies a landscape of targets for circadian clock-modulating compounds. PMID:31792063
Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis. PMID:31787963
Glycogen branching enzyme controls cellular iron homeostasis via Iron Regulatory Protein 1 and mitoNEET. PMID:31784520
Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage. PMID:31771979
DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput. PMID:31768060
Label-Free Interactome Analysis Revealed an Essential Role of CUL3-KEAP1 Complex in Mediating the Ubiquitination and Degradation of PHD2. PMID:31763849
Arabidopsis proteome and the mass spectral assay library. PMID:31757973
A Subcellular Quantitative Proteomic Analysis of Herpes Simplex Virus Type 1-Infected HEK 293T Cells. PMID:31757042
Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human. PMID:31754138
Chaperone-mediated ordered assembly of the SAGA and NuA4 transcription co-activator complexes in yeast. PMID:31748520
Contribution of proteasome-catalyzed peptide cis-splicing to viral targeting by CD8+ T cells in HIV-1 infection. PMID:31748275
In Situ Structural Restraints from Cross-Linking Mass Spectrometry in Human Mitochondria. PMID:31746214
The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases. PMID:31744855
High-Throughput Quantitative Top-Down Proteomics: Histone H4. PMID:31741267
Quorum sensing modulates the formation of virulent Legionella persisters within infected cells. PMID:31740681
Galnt11 regulates kidney function by glycosylating the endocytosis receptor megalin to modulate ligand binding. PMID:31740596
Regulation of macrophage activity by surface receptors contained within Borrelia burgdorferi-enriched phagosomal fractions. PMID:31738806
Bone Marrow Mesenchymal Stem Cells' Secretome Exerts Neuroprotective Effects in a Parkinson's Disease Rat Model. PMID:31737616
Broad Substrate-Specific Phosphorylation Events Are Associated With the Initial Stage of Plant Cell Wall Recognition in Neurospora crassa. PMID:31736884
TMX2 Is a Crucial Regulator of Cellular Redox State, and Its Dysfunction Causes Severe Brain Developmental Abnormalities. PMID:31735293
Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment. PMID:31735170
Assessing Protein Sequence Database Suitability Using De Novo Sequencing. PMID:31732549
Prolyl hydroxylase substrate adenylosuccinate lyase is an oncogenic driver in triple negative breast cancer. PMID:31729379
Proteomic profiling of the thrombin-activated canine platelet secretome (CAPS). PMID:31721811
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. PMID:31701143
Noncompetitive binding of PpiD and YidC to the SecYEG translocon expands the global view on the SecYEG interactome in Escherichia coli. PMID:31699901
Evidence for a role of protein phosphorylation in the maintenance of the cnidarian-algal symbiosis. PMID:31693769
Metaproteomic data of maize rhizosphere for deciphering functional diversity. PMID:31692741
The molecular architecture of photoreceptor phosphodiesterase 6 (PDE6) with activated G protein elucidates the mechanism of visual excitation. PMID:31690623
Quantitative Proteome Analysis of Atg5-Deficient Mouse Embryonic Fibroblasts Reveals the Range of the Autophagy-Modulated Basal Cellular Proteome. PMID:31690592
yRACK1/Asc1 proxiOMICs-Towards Illuminating Ships Passing in the Night. PMID:31689955
Molecular basis of senescence transmitting in the population of human endometrial stromal cells. PMID:31689238
Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild. PMID:31687451
Proteomic dataset: Profiling of membrane fraction of Escherichia coli isolated from Crohn's disease patients after adhesion and invasion experiments. PMID:31687427
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. PMID:31686107
Differential scaling between G1 protein production and cell size dynamics promotes commitment to the cell division cycle in budding yeast. PMID:31685990
Ligand-induced disorder-to-order transitions characterized by structural proteomics and molecular dynamics simulations. PMID:31683063
Single-cell proteomics reveals changes in expression during hair-cell development. PMID:31682227
Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling. PMID:31681351
Desumoylation of RNA polymerase III lies at the core of the Sumo stress response in yeast. PMID:31676685
CEH-60/PBX regulates vitellogenesis and cuticle permeability through intestinal interaction with UNC-62/MEIS in Caenorhabditis elegans. PMID:31675356
Adolescent rat social play: Amygdalar proteomic and transcriptomic data. PMID:31673590
N-WASP Control of LPAR1 Trafficking Establishes Response to Self-Generated LPA Gradients to Promote Pancreatic Cancer Cell Metastasis. PMID:31668663
Predominant cleavage of proteins N-terminal to serines and threonines using scandium(III) triflate. PMID:31667593
Datasets: Sensitivity and protein digestion course of proteomic Filter Aided Sample Preparation. PMID:31667293
Experimental data from flesh quality assessment and shelf life monitoring of high pressure processed European sea bass (Dicentrarchus labrax) fillets. PMID:31667223
ERO1α promotes hypoxic tumor progression and is associated with poor prognosis in pancreatic cancer. PMID:31666928
The Mitochondrial Acyl-carrier Protein Interaction Network Highlights Important Roles for LYRM Family Members in Complex I and Mitoribosome Assembly. PMID:31666358
Expression Atlas update: from tissues to single cells. PMID:31665515
A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels. PMID:31662474
Expedited mapping of the ligandable proteome using fully functionalized enantiomeric probe pairs. PMID:31659311
Proteins and microRNAs are differentially expressed in tear fluid from patients with Alzheimer's disease. PMID:31659197
The Cytotoxic Natural Product Vioprolide A Targets Nucleolar Protein 14, Which Is Essential for Ribosome Biogenesis. PMID:31658409
YTHDF1 links hypoxia adaptation and non-small cell lung cancer progression. PMID:31653849
An RNA guanine quadruplex regulated pathway to TRAIL-sensitization by DDX21. PMID:31653714
Protein tyrosine phosphatase receptor type R (PTPRR) antagonizes the Wnt signaling pathway in ovarian cancer by dephosphorylating and inactivating β-catenin. PMID:31653698
Protein Carbonylation in Patients with Myelodysplastic Syndrome: An Opportunity for Deferasirox Therapy. PMID:31652983
Francisella tularensis subsp. holarctica Releases Differentially Loaded Outer Membrane Vesicles Under Various Stress Conditions. PMID:31649645
Proteomic Profiling of Extracellular Vesicles Isolated From Cerebrospinal Fluid of Former National Football League Players at Risk for Chronic Traumatic Encephalopathy. PMID:31649498
Membrane associated proteins of two Trichomonas gallinae clones vary with the virulence. PMID:31647841
Metabolic regulation of gene expression by histone lactylation. PMID:31645732
A framework for TRIM21-mediated protein depletion in early mouse embryos: recapitulation of Tead4 null phenotype over three days. PMID:31638890
Glucocorticoid Treatment Leads to Aberrant Ion and Macromolecular Transport in Regenerating Zebrafish Fins. PMID:31636606
Invariable stoichiometry of ribosomal proteins in mouse brain tissues with aging. PMID:31636180
A Neofunctionalized X-Linked Ampliconic Gene Family Is Essential for Male Fertility and Equal Sex Ratio in Mice. PMID:31630956
Multiplexed proteome profiling of carbon source perturbations in two yeast species with SL-SP3-TMT. PMID:31626996
Global Secretome Characterization of the Pathogenic Yeast Candida glabrata. PMID:31621333
The C-Terminal Domains SnRK2 Box and ABA Box Have a Role in Sugarcane SnRK2s Auto-Activation and Activity. PMID:31620147
Quantitative Proteome Profiling of Coxiella burnetii Reveals Major Metabolic and Stress Differences Under Axenic and Cell Culture Cultivation. PMID:31620097
The RNA-binding protein SART3 promotes miR-34a biogenesis and G1 cell cycle arrest in lung cancer cells. PMID:31619517
Site-specific N-glycosylation of HeLa cell glycoproteins. PMID:31616032
Depletion of the FtsH1/3 Proteolytic Complex Suppresses the Nutrient Stress Response in the Cyanobacterium Synechocystis sp strain PCC 6803. PMID:31615847
Human and Nonhuman Primate Lineage-Specific Footprints in the Salivary Proteome. PMID:31614365
Arsenic Response of Three Altiplanic Exiguobacterium Strains With Different Tolerance Levels Against the Metalloid Species: A Proteomics Study. PMID:31611848
Improved Nanoflow RPLC-CZE-MS/MS System with High Peak Capacity and Sensitivity for Nanogram Bottom-up Proteomics. PMID:31610113
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. PMID:31599596
A novel chlorophyll protein complex in the repair cycle of photosystem II. PMID:31594847
A Click-Chemistry-Based Enrichable Crosslinker for Structural and Protein Interaction Analysis by Mass Spectrometry. PMID:31593346
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. PMID:31591397
MatrisomeDB: the ECM-protein knowledge database. PMID:31586405
Artificial fingerprints for cross-comparison of forensic DNA and protein recovery methods. PMID:31581206
Binding to medium and long chain fatty acyls is a common property of HEAT and ARM repeat modules. PMID:31578417
Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites. PMID:31578252
Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism. PMID:31578229
NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions. PMID:31578220
Functional recruitment of dynamin requires multimeric interactions for efficient endocytosis. PMID:31575863
Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. PMID:31573204
Borealin-nucleosome interaction secures chromosome association of the chromosomal passenger complex. PMID:31570499
Differential distributions of trafficking and signaling proteins of the maize ER-Golgi apparatus. PMID:31564200
2018 YPIC Challenge: A Case Study in Characterizing an Unknown Protein Sample. PMID:31556620
Comprehensive Landscape of Active Deubiquitinating Enzymes Profiled by Advanced Chemoproteomics. PMID:31555637
Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry. PMID:31555227
Purified F-ATP synthase forms a Ca2+-dependent high-conductance channel matching the mitochondrial permeability transition pore. PMID:31554800
Evaluating False Transfer Rates from the Match-between-Runs Algorithm with a Two-Proteome Model. PMID:31547658
Comprehensive Detection of Isopeptides between Human Tissue Transglutaminase and Gluten Peptides. PMID:31547042
Proteomic Analysis of miR-195 and miR-497 Replacement Reveals Potential Candidates that Increase Sensitivity to Oxaliplatin in MSI/P53wt Colorectal Cancer Cells. PMID:31546954
Refinements of LC-MS/MS Spectral Counting Statistics Improve Quantification of Low Abundance Proteins. PMID:31541118
Endoglin Protein Interactome Profiling Identifies TRIM21 and Galectin-3 as New Binding Partners. PMID:31540324
Recurrent GNAQ mutation encoding T96S in natural killer/T cell lymphoma. PMID:31527657
The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei. PMID:31527615
Identification of proteins and miRNAs that specifically bind an mRNA in vivo. PMID:31527589
Comparative study of excretory-secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata. PMID:31521183
Ligandomes obtained from different HLA-class II-molecules are homologous for N- and C-terminal residues outside the peptide-binding cleft. PMID:31520135
B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma. PMID:31519915
Cannabidiol induces antioxidant pathways in keratinocytes by targeting BACH1. PMID:31518892
Comparative compositional and functional analyses of Bothrops moojeni specimens reveal several individual variations. PMID:31513632
Computational and experimental analysis of the glycophosphatidylinositol-anchored proteome of the human parasitic nematode Brugia malayi. PMID:31513600
At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis. PMID:31511893
Proteomic Investigations of Autism Brain Identify Known and Novel Pathogenetic Processes. PMID:31511657
Enamel peptides reveal the sex of the Late Antique 'Lovers of Modena'. PMID:31511583
Unexpected roles for ADH1 and SORD in catalyzing the final step of erythritol biosynthesis. PMID:31511322
An Integrated Transcriptome and Proteome Analysis Reveals New Insights into Russeting of Bagging and Non-Bagging "Golden Delicious" Apple. PMID:31510041
A single T cell epitope drives the neutralizing anti-drug antibody response to natalizumab in multiple sclerosis patients. PMID:31501610
Identification of proteins in the adhesive trails of the diatom Amphora coffeaeformis. PMID:31495312
Proteomic and transcriptional profiling of rat amygdala following social play. PMID:31493430
ALDH7A1 inhibits the intracellular transport pathways during hypoxia and starvation to promote cellular energy homeostasis. PMID:31492851
mTMT: An Alternative, Nonisobaric, Tandem Mass Tag Allowing for Precursor-Based Quantification. PMID:31490667
Acyldepsipeptide Probes Facilitate Specific Detection of Caseinolytic Protease P Independent of Its Oligomeric and Activity State. PMID:31487112
Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency. PMID:31481099
The MyMOMA domain of MYO19 encodes for distinct Miro-dependent and Miro-independent mechanisms of interaction with mitochondrial membranes. PMID:31479585
FAK activity sustains intrinsic and acquired ovarian cancer resistance to platinum chemotherapy. PMID:31478830
Comparative proteomics of stenotopic caddisfly Crunoecia irrorata identifies acclimation strategies to warming. PMID:31478292
HSP60-regulated Mitochondrial Proteostasis and Protein Translation Promote Tumor Growth of Ovarian Cancer. PMID:31477750
CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. PMID:31477705
RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis. PMID:31455787
Insights into Early Recovery from Influenza Pneumonia by Spatial and Temporal Quantification of Putative Lung Regenerating Cells and by Lung Proteomics. PMID:31455003
SILAC-Based Quantification of TGFBR2-Regulated Protein Expression in Extracellular Vesicles of Microsatellite Unstable Colorectal Cancers. PMID:31454892
Cell-derived extracellular vesicles can be used as a biomarker reservoir for glioblastoma tumor subtyping. PMID:31453379
Bolt: a New Age Peptide Search Engine for Comprehensive MS/MS Sequencing Through Vast Protein Databases in Minutes. PMID:31452088
ComplexBrowser: A Tool for Identification and Quantification of Protein Complexes in Large-scale Proteomics Datasets. PMID:31447428
Prognostic value of biomarkers EpCAM and αB-crystallin associated with lymphatic metastasis in breast cancer by iTRAQ analysis. PMID:31443698
Synthetic Polyclonal-Derived CDR Peptides as an Innovative Strategy in Glaucoma Therapy. PMID:31443184
NifA is the master regulator of both nitrogenase systems in Rhodobacter capsulatus. PMID:31441241
The Effects of Sindbis Viral Vectors on Neuronal Function. PMID:31440143
Structural basis for lamin assembly at the molecular level. PMID:31434876
The ubiquitin-conjugating enzyme UBE2QL1 coordinates lysophagy in response to endolysosomal damage. PMID:31432621
PPM1G forms a PPP-type phosphatase holoenzyme with B56δ that maintains adherens junction integrity. PMID:31432583
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. PMID:31430157
PPARβ/δ recruits NCOR and regulates transcription reinitiation of ANGPTL4. PMID:31428774
Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973. PMID:31426316
Dentate Gyrus Peroxiredoxin 6 Levels Discriminate Aged Unimpaired From Impaired Rats in a Spatial Memory Task. PMID:31417400
Evaluation of sodium deoxycholate as solubilization buffer for oil palm proteomics analysis. PMID:31415606
Redox modifications of cysteine-containing proteins, cell cycle arrest and translation inhibition: Involvement in vitamin C-induced breast cancer cell death. PMID:31412312
A closer look at Aspergillus: online monitoring via scattered light enables reproducible phenotyping. PMID:31396392
Toll-Like Receptor 2 Release by Macrophages: An Anti-inflammatory Program Induced by Glucocorticoids and Lipopolysaccharide. PMID:31396208
S100A9 extends lifespan in insulin deficiency. PMID:31391467
An influenza virus-triggered SUMO switch orchestrates co-opted endogenous retroviruses to stimulate host antiviral immunity. PMID:31391303
Quantifying the impact of public omics data. PMID:31383865
Resistance in marine cyanobacteria differs against specialist and generalist cyanophages. PMID:31383764
Aspartate Residues Far from the Active Site Drive O-GlcNAc Transferase Substrate Selection. PMID:31373491
Resolving subcellular plant metabolism. PMID:31361942
Structure of the Human Core Centromeric Nucleosome Complex. PMID:31353180
Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis. PMID:31351878
Mechanism of pharmacochaperoning in a mammalian KATP channel revealed by cryo-EM. PMID:31343405
EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming. PMID:31341159
In-Depth, Proteomic Analysis of Nasal Secretions from Patients With Chronic Rhinosinusitis and Nasal Polyps. PMID:31332980
Peptidyl-Prolyl Isomerase ppiB Is Essential for Proteome Homeostasis and Virulence in Burkholderia pseudomallei. PMID:31331957
Inhibition of bacterial ubiquitin ligases by SidJ-calmodulin catalysed glutamylation. PMID:31330532
Nitric oxide maintains endothelial redox homeostasis through PKM2 inhibition. PMID:31328803
Matrix metalloproteinases inactivate the proinflammatory functions of secreted moonlighting tryptophanyl-tRNA synthetase. PMID:31324718
Biopearling of Interconnected Outer Membrane Vesicle Chains by a Marine Flavobacterium. PMID:31324630
Proteogenomic Analysis of Protein Sequence Alterations in Breast Cancer Cells. PMID:31316139
Anti-tumor effects of PIM/PI3K/mTOR triple kinase inhibitor IBL-302 in neuroblastoma. PMID:31310053
In vivo identification of GTPase interactors by mitochondrial relocalization and proximity biotinylation. PMID:31294692
Serial Systemic Candida albicans Infection Highlighted by Proteomics. PMID:31293987
Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates. PMID:31292258
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. PMID:31290668
Antagonistic Interactions between Benzo[a]pyrene and Fullerene (C60) in Toxicological Response of Marine Mussels. PMID:31288459
Reconstitution of Microtubule Nucleation In Vitro Reveals Novel Roles for Mzt1. PMID:31287970
Efficient T cell-B cell collaboration guides autoantibody epitope bias and onset of celiac disease. PMID:31285344
Selective Proteolysis of α-Lactalbumin by Endogenous Enzymes of Human Milk at Acidic pH. PMID:31271254
Decreased synthesis of ribosomal proteins in tauopathy revealed by non-canonical amino acid labelling. PMID:31268600
Prediction of an Upper Limit for the Fraction of Interprotein Cross-Links in Large-Scale In Vivo Cross-Linking Studies. PMID:31267744
CDK1 and CDK2 regulate NICD1 turnover and the periodicity of the segmentation clock. PMID:31267714
Extracellular vesicles impose quiescence on residual hematopoietic stem cells in the leukemic niche. PMID:31267709
Identification of PKCα-dependent phosphoproteins in mouse retina. PMID:31255707
WDFY2 restrains matrix metalloproteinase secretion and cell invasion by controlling VAMP3-dependent recycling. PMID:31253801
Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses. PMID:31253788
Structural basis of TFIIH activation for nucleotide excision repair. PMID:31253769
A proteomic analysis of the statocyst endolymph in common cuttlefish (Sepia officinalis): an assessment of acoustic trauma after exposure to sound. PMID:31249355
Defining the NSD2 interactome: PARP1 PARylation reduces NSD2 histone methyltransferase activity and impedes chromatin binding. PMID:31248990
Targeted and Interactome Proteomics Revealed the Role of PHD2 in Regulating BRD4 Proline Hydroxylation. PMID:31239290
Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussis. PMID:31238496
Comparative proteomic study of liver lipid droplets and mitochondria in mice housed at different temperatures. PMID:31234227
Symplasmic phloem unloading and radial post-phloem transport via vascular rays in tuberous roots of Manihot esculenta. PMID:31232453
Cytosine N4-Methylation via M.Ssp6803II Is Involved in the Regulation of Transcription, Fine- Tuning of DNA Replication and DNA Repair in the Cyanobacterium Synechocystis sp. PCC 6803. PMID:31231331
Inhibition of mPGES-1 or COX-2 Results in Different Proteomic and Lipidomic Profiles in A549 Lung Cancer Cells. PMID:31231223
Proteomic analysis of urinary extracellular vesicles reveal biomarkers for neurologic disease. PMID:31229437
Quantitative proteomics revealed C6orf203/MTRES1 as a factor preventing stress-induced transcription deficiency in human mitochondria. PMID:31226201
Cross-linking Proteomics Indicates Effects of Simvastatin on the TLR2 Interactome and Reveals ACTR1A as a Novel Regulator of the TLR2 Signal Cascade. PMID:31221720
PTPN21 and Hook3 relieve KIF1C autoinhibition and activate intracellular transport. PMID:31217419
XAB2 depletion induces intron retention in POLR2A to impair global transcription and promote cellular senescence. PMID:31216022
Degradome of soluble ADAM10 and ADAM17 metalloproteases. PMID:31209506
Mediator complex interaction partners organize the transcriptional network that defines neural stem cells. PMID:31209209
Absolute quantification of cohesin, CTCF and their regulators in human cells. PMID:31204999
Abundance of bacterial Type VI secretion system components measured by targeted proteomics. PMID:31197144
Phosphoproteome Analysis Reveals Estrogen-ER Pathway as a Modulator of mTOR Activity Via DEPTOR. PMID:31189691
miR-17-92 and miR-106b-25 clusters regulate beta cell mitotic checkpoint and insulin secretion in mice. PMID:31187215
Systems Analyses Reveal the Resilience of Escherichia coli Physiology during Accumulation and Export of the Nonnative Organic Acid Citramalate. PMID:31186337
Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry Produces over 4400 Phosphopeptide Identifications from a 220 ng Sample. PMID:31180221
The TOR Pathway Plays Pleiotropic Roles in Growth and Stress Responses of the Fungal Pathogen Cryptococcus neoformans. PMID:31175227
Quantification of cellular protein and redox imbalance using SILAC-iodoTMT methodology. PMID:31154163
Musashi interaction with poly(A)-binding protein is required for activation of target mRNA translation. PMID:31152063
One-Pot Quantitative Top- and Middle-Down Analysis of GluC-Digested Histone H4. PMID:31147891
Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition. PMID:31147889
Intact Transition Epitope Mapping - Targeted High-Energy Rupture of Extracted Epitopes (ITEM-THREE). PMID:31147491
Novel Prognostic Markers in Triple-Negative Breast Cancer Discovered by MALDI-Mass Spectrometry Imaging. PMID:31139569
Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains. PMID:31138642
An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. PMID:31134003
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation. PMID:31133702
Multifaceted Mass Spectrometric Investigation of Neuropeptide Changes in Atlantic Blue Crab, Callinectes sapidus, in Response to Low pH Stress. PMID:31132273
Pax3 cooperates with Ldb1 to direct local chromosome architecture during myogenic lineage specification. PMID:31127120
Electron Transfer/Higher Energy Collisional Dissociation of Doubly Charged Peptide Ions: Identification of Labile Protein Phosphorylations. PMID:31111417
Murine obscurin and Obsl1 have functionally redundant roles in sarcolemmal integrity, sarcoplasmic reticulum organization, and muscle metabolism. PMID:31098411
Simultaneous Improvement in the Precision, Accuracy, and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains. PMID:31097671
PFA ependymoma-associated protein EZHIP inhibits PRC2 activity through a H3 K27M-like mechanism. PMID:31086175
Comparison of Proteome Composition of Serum Enriched in Extracellular Vesicles Isolated from Polycythemia Vera Patients and Healthy Controls. PMID:31064135
Integrative proteomics reveals an increase in non-degradative ubiquitylation in activated CD4+ T cells. PMID:31061531
Thylakoid Protein Phosphorylation Dynamics in a Moss Mutant Lacking SERINE/THREONINE PROTEIN KINASE STN8. PMID:31061101
SIRT3 controls brown fat thermogenesis by deacetylation regulation of pathways upstream of UCP1. PMID:31060926
Isolation and mass spectrometry based hydroxyproline mapping of type II collagen derived from Capra hircus ear cartilage. PMID:31044171
A combined FSTRA-shotgun proteomics approach to identify molecular changes in zebrafish upon chemical exposure. PMID:31036921
TEFM regulates both transcription elongation and RNA processing in mitochondria. PMID:31036713
Updated MS²PIP web server delivers fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques. PMID:31028400
Comprehensive Study of the Proteome and Transcriptome of the Venom of the Most Venomous European Viper: Discovery of a New Subclass of Ancestral Snake Venom Metalloproteinase Precursor-Derived Proteins. PMID:31017792
Modeling Protein Destiny in Developing Fruit. PMID:31015299
A Chemical Strategy for Protease Substrate Profiling. PMID:31006619
Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1. PMID:31000703
TNRC6 proteins modulate hepatitis C virus replication by spatially regulating the binding of miR-122/Ago2 complexes to viral RNA. PMID:30997501
High-throughput Exploration of the Network Dependent on AKT1 in Mouse Ovarian Granulosa Cells. PMID:30992313
Synthetic Lethality of Wnt Pathway Activation and Asparaginase in Drug-Resistant Acute Leukemias. PMID:30991026
Rapid and Reversible Knockdown of Endogenously Tagged Endosomal Proteins via an Optimized HaloPROTAC Degrader. PMID:30978004
The histone chaperone CAF-1 cooperates with the DNA methyltransferases to maintain Cd4 silencing in cytotoxic T cells. PMID:30975723
Identification of ChIP-seq and RIME grade antibodies for Estrogen Receptor alpha. PMID:30970003
An RNA Chaperone-Like Protein Plays Critical Roles in Chloroplast mRNA Stability and Translation in Arabidopsis and Maize. PMID:30962391
FET family fusion oncoproteins target the SWI/SNF chromatin remodeling complex. PMID:30962207
Proteomic and transcriptomic experiments reveal an essential role of RNA degradosome complexes in shaping the transcriptome of Mycobacterium tuberculosis. PMID:30957850
Quantitative mass spectrometric analysis to unravel glycoproteomic signature of follicular fluid in women with polycystic ovary syndrome. PMID:30946770
Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites. PMID:30943267
Indoxyl Sulfate and p-Cresyl Sulfate Promote Vascular Calcification and Associate with Glucose Intolerance. PMID:30940651
Cytological and Proteomic Analysis of Wheat Pollen Abortion Induced by Chemical Hybridization Agent. PMID:30939734
Dual chemical probes enable quantitative system-wide analysis of protein prenylation and prenylation dynamics. PMID:30936521
Discovery of Covalent CDK14 Inhibitors with Pan-TAIRE Family Specificity. PMID:30930164
Differential role for phosphorylation in alternative polyadenylation function versus nuclear import of SR-like protein CPSF6. PMID:30916345
Glycome and Proteome Components of Golgi Membranes Are Common between Two Angiosperms with Distinct Cell-Wall Structures. PMID:30914498
Cellular senescence in progenitor cells contributes to diminished remyelination potential in progressive multiple sclerosis. PMID:30910981
Targeted Mass Spectrometry Analysis of Clostridium perfringens Toxins. PMID:30909561
Effect of MSCs and MSC-Derived Extracellular Vesicles on Human Blood Coagulation. PMID:30893822
The Dual Prey-Inactivation Strategy of Spiders-In-Depth Venomic Analysis of Cupiennius salei. PMID:30893800
A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis. PMID:30886426
Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins. PMID:30859831
Signs of biological activities of 28,000-year-old mammoth nuclei in mouse oocytes visualized by live-cell imaging. PMID:30858410
Proteome-wide solubility and thermal stability profiling reveals distinct regulatory roles for ATP. PMID:30858367
Synovial fluid proteome changes in ACL injury-induced posttraumatic osteoarthritis: Proteomics analysis of porcine knee synovial fluid. PMID:30822327
Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis. PMID:30814119
A synthetic non-histone substrate to study substrate targeting by the Gcn5 HAT and sirtuin HDACs. PMID:30804216
Human colon organoids reveal distinct physiologic and oncogenic Wnt responses. PMID:30792186
A mechanism for temporary bioadhesion. PMID:30782790
TKO6: A Peptide Standard To Assess Interference for Unit-Resolved Isobaric Labeling Platforms. PMID:30481031
Web-Based Search Tool for Visualizing Instrument Performance Using the Triple Knockout (TKO) Proteome Standard. PMID:30451507
The European Bioinformatics Institute in 2018: tools, infrastructure and training. PMID:30445657
2016 update of the PRIDE database and its related tools PubMed citations: 1628.

1628 articles citing: 2016 update of the PRIDE database and its related tools

Comprehensive and systematic characterization of multi-functionalized cisplatin nano-conjugate: from the chemistry and proteomic biocompatibility to the animal model. PMID:35858906
Identification of growth hormone receptor as a relevant target for precision medicine in low-EGFR expressing glioblastoma. PMID:35808822
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0. PMID:35773252
Computational cancer neoantigen prediction: current status and recent advances. PMID:35755950
Light Quality Modulates Plant Cold Response and Freezing Tolerance. PMID:35755673
A Dual-Acting Nitric Oxide Donor and Phosphodiesterase 5 Inhibitor Activates Autophagy in Primary Skin Fibroblasts. PMID:35743299
Selective modulation of cell surface proteins during vaccinia infection: A resource for identifying viral immune evasion strategies. PMID:35727847
Integration of Transcriptomics Data and Metabolomic Data Using Biomedical Literature Mining and Pathway Analysis. PMID:35713871
Stimulating Effect of Trichococcus flocculiformis on a Coculture of Syntrophomonas wolfei and Methanospirillum hungatei. PMID:35699440
Patterning of the Autotrophic, Mixotrophic, and Heterotrophic Proteomes of Oxygen-Evolving Cyanobacterium Synechocystis sp. PCC 6803. PMID:35694301
In-depth Profiling and Quantification of the Lysine Acetylome in Hepatocellular Carcinoma with a Trapped Ion Mobility Mass Spectrometer. PMID:35688384
A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution. PMID:35680998
Crizotinib Shows Antibacterial Activity against Gram-Positive Bacteria by Reducing ATP Production and Targeting the CTP Synthase PyrG. PMID:35674439
Manganese Modulates Metabolic Activity and Redox Homeostasis in Translationally Blocked Lactococcus cremoris, Impacting Metabolic Persistence, Cell Culturability, and Flavor Formation. PMID:35638825
InvL, an Invasin-Like Adhesin, Is a Type II Secretion System Substrate Required for Acinetobacter baumannii Uropathogenesis. PMID:35638734
Brain Proteome and Behavioural Analysis in Wild Type, BDNF+/- and BDNF-/- Adult Zebrafish (Danio rerio) Exposed to Two Different Temperatures. PMID:35628418
Ethanolamine-phosphate on the second mannose is a preferential bridge for some GPI-anchored proteins. PMID:35603428
Effect of Sample Transportation on the Proteome of Human Circulating Blood Extracellular Vesicles. PMID:35562906
Thymosin β4 cytoplasmic/nuclear translocation as a new marker of cellular stress. A Caco2 case study. PMID:35497634
Cas1 and Fen1 Display Equivalent Functions During Archaeal DNA Repair. PMID:35495653
Global, distinctive, and personal changes in molecular and microbial profiles by specific fibers in humans. PMID:35483363
The Phenylacetic Acid Catabolic Pathway Regulates Antibiotic and Oxidative Stress Responses in Acinetobacter. PMID:35467424
A Monoclonal Anti-HMGB1 Antibody Attenuates Neurodegeneration in an Experimental Animal Model of Glaucoma. PMID:35456925
Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework. PMID:35439943
A Wide-Proteome Analysis to Identify Molecular Pathways Involved in Kidney Response to High-Fat Diet in Mice. PMID:35409168
Effects of Fe and Mn Deficiencies on the Root Protein Profiles of Tomato (Solanum lycopersicum) Using Two-Dimensional Electrophoresis and Label-Free Shotgun Analyses. PMID:35409079
Physiological Roles of Short-Chain and Long-Chain Menaquinones (Vitamin K2) in Lactococcus cremoris. PMID:35369466
Posttranslational modification of the RHO of plants protein RACB by phosphorylation and cross-kingdom conserved ubiquitination. PMID:35333858
SWATH-MS identification of CXCL7, LBP, TGFβ1 and PDGFRβ as novel biomarkers in human systemic mastocytosis. PMID:35332176
LC-MS/MS-Based Serum Protein Profiling for Identification of Candidate Biomarkers in Pakistani Rheumatoid Arthritis Patients. PMID:35330214
PCBP2 maintains antiviral signaling homeostasis by regulating cGAS enzymatic activity via antagonizing its condensation. PMID:35322803
Vertebrate lonesome kinase modulates the hepatocyte secretome to prevent perivascular liver fibrosis and inflammation. PMID:35293576
The life history of Drosophila sperm involves molecular continuity between male and female reproductive tracts. PMID:35254899
Macrophages secrete murinoglobulin-1 and galectin-3 to regulate neutrophil degranulation after myocardial infarction. PMID:35230372
Shotgun Proteomics as a Powerful Tool for the Study of the Proteomes of Plants, Their Pathogens, and Plant-Pathogen Interactions. PMID:35225985
Review of Liquid Chromatography-Mass Spectrometry-Based Proteomic Analyses of Body Fluids to Diagnose Infectious Diseases. PMID:35216306
Label-free proteome data of susceptible and resistant rice cultivars in response to Xanthomonas oryzae pv. oryzae inoculation. PMID:35198671
Characterization of Glycoproteoforms of Integrins α2 and β1 in Megakaryocytes in the Occurrence of JAK2V617F Mutation-Induced Primary Myelofibrosis. PMID:35182768
The H. pylori CagA Oncoprotein Induces DNA Double Strand Breaks through Fanconi Anemia Pathway Downregulation and Replication Fork Collapse. PMID:35163588
Proteome Profiling of Mycobacterium tuberculosis Cells Exposed to Nitrosative Stress. PMID:35128256
Receptor-interacting protein kinase 2 (RIPK2) stabilizes c-Myc and is a therapeutic target in prostate cancer metastasis. PMID:35115556
Exploring Human Milk Dynamics: Interindividual Variation in Milk Proteome, Peptidome, and Metabolome. PMID:35104145
Vps501, a novel vacuolar SNX-BAR protein cooperates with the SEA complex to regulate TORC1 signaling. PMID:35098628
Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1E. PMID:35095781
High Throughput Screening of a Prescription Drug Library for Inhibitors of Organic Cation Transporter 3, OCT3. PMID:35089508
Proteomic Characterization of Dry Blood Spots of Healthy Women During Simulation the Microgravity Effects Using Dry Immersion. PMID:35087415
Proteomic analysis of metabolic pathways supports chloroplast-mitochondria cross-talk in a Cu-limited diatom. PMID:35079683
Tau interactome maps synaptic and mitochondrial processes associated with neurodegeneration. PMID:35063084
Detection and quantitation of host cell proteins in monoclonal antibody drug products using automated sample preparation and data-independent acquisition LC-MS/MS. PMID:35028177
Amaranthus hypochondriacus seeds as a rich source of cysteine rich bioactive peptides. PMID:34995961
Comparative genomics and proteomics of Eubacterium maltosivorans: functional identification of trimethylamine methyltransferases and bacterial microcompartments in a human intestinal bacterium with a versatile lifestyle. PMID:34978130
Proteomic Analysis of a Syntrophic Coculture of Syntrophobacter fumaroxidans MPOBT and Geobacter sulfurreducens PCAT. PMID:34950111
Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes. PMID:34908431
A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana. PMID:34906086
BoxCar and shotgun proteomic analyses reveal molecular networks regulated by UBR5 in prostate cancer. PMID:34897998
Mass Spectrometric Identification of Antimicrobial Peptides from Medicinal Seeds. PMID:34885884
Quantitative Proteomics and Differential Protein Abundance Analysis after the Depletion of PEX3 from Human Cells Identifies Additional Aspects of Protein Targeting to the ER. PMID:34884833
Proteogenomics analysis of CUG codon translation in the human pathogen Candida albicans. PMID:34863173
ATR inhibition enables complete tumour regression in ALK-driven NB mouse models. PMID:34819497
Statins affect cancer cell plasticity with distinct consequences for tumor progression and metastasis. PMID:34818551
Inositol 1,4,5-trisphosphate receptor type 3 (ITPR3) is overexpressed in cholangiocarcinoma and its expression correlates with S100 calcium-binding protein A4 (S100A4). PMID:34798470
Defactinib inhibits PYK2 phosphorylation of IRF5 and reduces intestinal inflammation. PMID:34795257
Hepatocyte-specific perturbation of NAD+ biosynthetic pathways in mice induces reversible nonalcoholic steatohepatitis-like phenotypes. PMID:34762911
Conditions for maintenance of hepatocyte differentiation and function in 3D cultures. PMID:34746700
The Two-Component System RstA/RstB Regulates Expression of Multiple Efflux Pumps and Influences Anaerobic Nitrate Respiration in Pseudomonas fluorescens. PMID:34726491
Lactococcus lactis Mutants Obtained From Laboratory Evolution Showed Elevated Vitamin K2 Content and Enhanced Resistance to Oxidative Stress. PMID:34721346
Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses. PMID:34704828
Defining NASH from a Multi-Omics Systems Biology Perspective. PMID:34682795
Identification of Biochemical and Molecular Markers of Early Aging in Childhood Cancer Survivors. PMID:34680366
Targeting public neoantigens for cancer immunotherapy. PMID:34676374
Multiomic profiling of the liver across diets and age in a diverse mouse population. PMID:34666007
Characterization of the Human Eccrine Sweat Proteome-A Focus on the Biological Variability of Individual Sweat Protein Profiles. PMID:34639210
Na+-Coupled Respiration and Reshaping of Extracellular Polysaccharide Layer Counteract Monensin-Induced Cation Permeability in Prevotella bryantii B14. PMID:34638543
Delineating the Switch between Senescence and Apoptosis in Cervical Cancer Cells under Ciclopirox Treatment. PMID:34638479
A Linkage-specific Sialic Acid Labeling Strategy Reveals Different Site-specific Glycosylation Patterns in SARS-CoV-2 Spike Protein Produced in CHO and HEK Cell Substrates. PMID:34631661
Combined serum anti-SSA/Ro and salivary TRIM29 reveals promising high diagnostic accuracy in patients with primary Sjögren's syndrome. PMID:34624052
Analysis of Brain Protein Stability Changes in Mouse Models of Normal Aging and α-Synucleinopathy Reveals Age- and Disease-Related Differences. PMID:34606284
Investigation of the blood proteome in response to spinal cord injury in rodent models. PMID:34601498
Atypical activation of signaling downstream of inactivated Bcr-Abl mediates chemoresistance in chronic myeloid leukemia. PMID:34596797
A Shotgun Proteomic Platform for a Global Mapping of Lymphoblastoid Cells to Gain Insight into Nasu-Hakola Disease. PMID:34576123
The Cell Wall Proteome of Craterostigma plantagineum Cell Cultures Habituated to Dichlobenil and Isoxaben. PMID:34571944
A phosphatase-centric mechanism drives stress signaling response. PMID:34558777
Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans. PMID:34535749
Data-Independent-Acquisition-Based Proteomic Approach towards Understanding the Acclimation Strategy of Oleaginous Microalga Microchloropsis gaditana CCMP526 in Hypersaline Conditions. PMID:34497906
Burkholderia PglL enzymes are Serine preferring oligosaccharyltransferases which target conserved proteins across the Burkholderia genus. PMID:34493791
Elamipretide (SS-31) treatment attenuates age-associated post-translational modifications of heart proteins. PMID:34480713
An Integrated Transcriptomics and Proteomics Analysis Implicates lncRNA MALAT1 in the Regulation of Lipid Metabolism. PMID:34478876
Tight Adherence (Tad) Pilus Genes Indicate Putative Niche Differentiation in Phytoplankton Bloom Associated Rhodobacterales. PMID:34447362
Accessory enzymes of hypercellulolytic Penicillium funiculosum facilitate complete saccharification of sugarcane bagasse. PMID:34446097
Too Hot to Handle: Antibacterial Peptides Identified in Ghost Pepper. PMID:34445876
Isotopically Dimethyl Labeling-Based Quantitative Proteomic Analysis of Phosphoproteomes of Soybean Cultivars. PMID:34439883
Proteome Dynamics during Antibiotic Persistence and Resuscitation. PMID:34427514
Sodium valproate increases activity of the sirtuin pathway resulting in beneficial effects for spinocerebellar ataxia-3 in vivo. PMID:34416891
Allotype-Specific Glycosylation and Cellular Localization of Human Leukocyte Antigen Class I Proteins. PMID:34415762
PRIMUS: Comprehensive proteomics of mouse intervertebral discs that inform novel biology and relevance to human disease modelling. PMID:34409283
Comparative analysis of stalked and acorn barnacle adhesive proteomes. PMID:34404232
The tumor suppressor folliculin inhibits lactate dehydrogenase A and regulates the Warburg effect. PMID:34381247
Modern Acinetobacter baumannii clinical isolates replicate inside spacious vacuoles and egress from macrophages. PMID:34370792
Activation of the Type VI Secretion System in the Squid Symbiont Vibrio fischeri Requires the Transcriptional Regulator TasR and the Structural Proteins TssM and TssA. PMID:34370559
The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators. PMID:34359847
The non-canonical target PARP16 contributes to polypharmacology of the PARP inhibitor talazoparib and its synergy with WEE1 inhibitors. PMID:34329582
The AGE receptor, OST48 drives podocyte foot process effacement and basement membrane expansion (alters structural composition). PMID:34277994
GIP_HUMAN[22-51] is a new proatherogenic peptide identified by native plasma peptidomics. PMID:34262109
CdrS Is a Global Transcriptional Regulator Influencing Cell Division in Haloferax volcanii. PMID:34253062
DIAmeter: matching peptides to data-independent acquisition mass spectrometry data. PMID:34252924
APOE genotype dependent molecular abnormalities in the cerebrovasculature of Alzheimer's disease and age-matched non-demented brains. PMID:34238312
Comparative Proteomic Analysis Reveals Varying Impact on Immune Responses in Phorbol 12-Myristate-13-Acetate-Mediated THP-1 Monocyte-to-Macrophage Differentiation. PMID:34234780
Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance. PMID:34228548
A serum proteome signature to predict mortality in severe COVID-19 patients. PMID:34226277
ALKBH3 partner ASCC3 mediates P-body formation and selective clearance of MMS-induced 1-methyladenosine and 3-methylcytosine from mRNA. PMID:34217309
Redirected nuclear glutamate dehydrogenase supplies Tet3 with α-ketoglutarate in neurons. PMID:34215750
HLA-B and cysteinylated ligands distinguish the antigen presentation landscape of extracellular vesicles. PMID:34211107
Quantitative Proteomics and Differential Protein Abundance Analysis after Depletion of Putative mRNA Receptors in the ER Membrane of Human Cells Identifies Novel Aspects of mRNA Targeting to the ER. PMID:34208277
Gene Replacement in Arabidopsis Reveals Manganese Transport as an Ancient Feature of Human, Plant and Cyanobacterial UPF0016 Proteins. PMID:34194462
Methane-dependent selenate reduction by a bacterial consortium. PMID:34183781
ATP Drives Efficient Terpene Biosynthesis in Marine Thraustochytrids. PMID:34182781
The highly conserved FOXJ1 target CFAP161 is dispensable for motile ciliary function in mouse and Xenopus. PMID:34172766
TNF-α induces endothelial-mesenchymal transition promoting stromal development of pancreatic adenocarcinoma. PMID:34172716
Integrated Quantitative Phosphoproteomics and Cell-based Functional Screening Reveals Specific Pathological Cardiac Hypertrophy-related Phosphorylation Sites. PMID:34158421
High-throughput microfluidic 3D biomimetic model enabling quantitative description of the human breast tumor microenvironment. PMID:34153511
A hub-and-spoke nuclear lamina architecture in trypanosomes. PMID:34151975
Maturation of the preterm gastrointestinal tract can be defined by host and microbial markers for digestion and barrier defense. PMID:34140588
The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brain. PMID:34139237
Proteomics-Based Data Integration of Wheat Cultivars Facing Fusarium graminearum Strains Revealed a Core-Responsive Pattern Controlling Fusarium Head Blight. PMID:34135919
RNA pull-down confocal nanoscanning (RP-CONA) detects quercetin as pri-miR-7/HuR interaction inhibitor that decreases α-synuclein levels. PMID:34107032
The Effect of Interferons on Presentation of Defective Ribosomal Products as HLA Peptides. PMID:34087483
Molecular Pathobiology of the Cerebrovasculature in Aging and in Alzheimers Disease Cases With Cerebral Amyloid Angiopathy. PMID:34079449
Hepatic stellate cells suppress NK cell-sustained breast cancer dormancy. PMID:34079127
Tripartite Separation of Glomerular Cell Types and Proteomes from Reporter-Free Mice. PMID:34074698
A Small RNA Is Linking CRISPR-Cas and Zinc Transport. PMID:34055875
Bacterial Microcompartment-Dependent 1,2-Propanediol Utilization of Propionibacterium freudenreichii. PMID:34054787
Identification of an Altered Matrix Signature in Kidney Aging and Disease. PMID:34049963
Retinal Proteomics of a Mouse Model of Dystroglycanopathies Reveals Molecular Alterations in Photoreceptors. PMID:34027671
A native conjugative plasmid confers potential selective advantages to plant growth-promoting Bacillus velezensis strain GH1-13. PMID:33990691
Propionate Production from Carbon Monoxide by Synthetic Cocultures of Acetobacterium wieringae and Propionigenic Bacteria. PMID:33990298
The Expression of NTAL and Its Protein Interactors Is Associated With Clinical Outcomes in Acute Myeloid Leukemia. PMID:33971369
Proteomic Studies of Primary Acute Myeloid Leukemia Cells Derived from Patients Before and during Disease-Stabilizing Treatment Based on All-Trans Retinoic Acid and Valproic Acid. PMID:33946813
Bacterial Hsp90 Facilitates the Degradation of Aggregation-Prone Hsp70-Hsp40 Substrates. PMID:33937334
An Integrated Genomic, Proteomic, and Immunopeptidomic Approach to Discover Treatment-Induced Neoantigens. PMID:33936100
HLA Class II Presentation Is Specifically Altered at Elevated Temperatures in the B-Lymphoblastic Cell Line JY. PMID:33933681
Parallel G-quadruplexes recruit the HSV-1 transcription factor ICP4 to promote viral transcription in herpes virus-infected human cells. PMID:33931711
Comprehensive Profiling of Secretome Formulations from Fetal- and Perinatal Human Amniotic Fluid Stem Cells. PMID:33918297
Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status. PMID:33917179
Daytime Restricted Feeding Affects Day-Night Variations in Mouse Cerebellar Proteome. PMID:33912010
Knock out of specific maternal vitellogenins in zebrafish (Danio rerio) evokes vital changes in egg proteomic profiles that resemble the phenotype of poor quality eggs. PMID:33910518
Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome. PMID:33910018
Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery. PMID:33902744
Molecular insights into plant desiccation tolerance: transcriptomics, proteomics and targeted metabolite profiling in Craterostigma plantagineum. PMID:33901322
Proteomic Profiling of IgG1 Producing CHO Cells Using LC/LC-SPS-MS3: The Effects of Bioprocessing Conditions on Productivity and Product Quality. PMID:33898396
Online biophysical predictions for SARS-CoV-2 proteins. PMID:33892639
Exploring the dermotoxicity of the mycotoxin deoxynivalenol: combined morphologic and proteomic profiling of human epidermal cells reveals alteration of lipid biosynthesis machinery and membrane structural integrity relevant for skin barrier function. PMID:33890134
Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits. PMID:33863921
Dynamic Intracellular Metabolic Cell Signaling Profiles During Ag-Dependent B-Cell Differentiation. PMID:33859640
Factors affecting the rapid changes of protein under short-term heat stress. PMID:33849452
Proteomic response of Escherichia coli to a membrane lytic and iron chelating truncated Amaranthus tricolor defensin. PMID:33845758
Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments. PMID:33821549
Protein interactome of the Cancerous Inhibitor of protein phosphatase 2A (CIP2A) in Th17 cells. PMID:33817627
Blind normalization of public high-throughput databases. PMID:33816884
ADAM10-Mediated Ectodomain Shedding Is an Essential Driver of Podocyte Damage. PMID:33785583
Adaptation of Dinoroseobacter shibae to oxidative stress and the specific role of RirA. PMID:33780465
The chemical compound 'Heatin' stimulates hypocotyl elongation and interferes with the Arabidopsis NIT1-subfamily of nitrilases. PMID:33768644
Domain Mapping of Chondroitin/Dermatan Sulfate Glycosaminoglycans Enables Structural Characterization of Proteoglycans. PMID:33757834
Focal adhesion kinase inhibition synergizes with nab-paclitaxel to target pancreatic ductal adenocarcinoma. PMID:33750427
Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance. PMID:33727228
Unbiased proteomic profiling of host cell extracellular vesicle composition and dynamics upon HIV-1 infection. PMID:33709510
Non-antibiotic pharmaceuticals promote the transmission of multidrug resistance plasmids through intra- and intergenera conjugation. PMID:33692486
Proteomic Adaptation of Clostridioides difficile to Treatment with the Antimicrobial Peptide Nisin. PMID:33670309
Integrated analysis of label-free quantitative proteomics and bioinformatics reveal insights into signaling pathways in male breast cancer. PMID:33656060
Recent Advanced Technologies for the Characterization of Xenobiotic-Degrading Microorganisms and Microbial Communities. PMID:33644024
In Well-Treated Celiac Patients Low-Level Mucosal Inflammation Predicts Response to 14-day Gluten Challenge. PMID:33643806
Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner. PMID:33640491
Penalized partial least squares for pleiotropy. PMID:33627076
Reprograming of sRNA target specificity by the leader peptide peTrpL in response to antibiotic exposure. PMID:33619526
The Role of Pseudo-Orthocaspase (SyOC) of Synechocystis sp. PCC 6803 in Attenuating the Effect of Oxidative Stress. PMID:33613507
Proteomic analyses identify major vault protein as a prognostic biomarker for fatal prostate cancer. PMID:33609362
mokapot: Fast and Flexible Semisupervised Learning for Peptide Detection. PMID:33596079
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. PMID:33589928
Arginine glycosylation enhances methylglyoxal detoxification. PMID:33589708
Myogenesis modelled by human pluripotent stem cells: a multi-omic study of Duchenne myopathy early onset. PMID:33586340
Proteomic Alterations in Multiple Myeloma: A Comprehensive Study Using Bone Marrow Interstitial Fluid and Serum Samples. PMID:33585190
Multiple Classes of Antimicrobial Peptides in Amaranthus tricolor Revealed by Prediction, Proteomics, and Mass Spectrometric Characterization. PMID:33576231
In silico identification of novel open reading frames in Plasmodium falciparum oocyte and salivary gland sporozoites using proteogenomics framework. PMID:33546698
Proteomic fingerprints of damage in extracellular matrix assemblies. PMID:33543016
Rab7-harboring vesicles are carriers of the transferrin receptor through the biosynthetic secretory pathway. PMID:33523982
Breath Biopsy and Discovery of Exclusive Volatile Organic Compounds for Diagnosis of Infectious Diseases. PMID:33520731
Replacing fish oil and astaxanthin by microalgal sources produced different metabolic responses in juvenile rainbow trout fed 2 types of practical diets. PMID:33515472
Acute environmental temperature variation affects brain protein expression, anxiety and explorative behaviour in adult zebrafish. PMID:33510219
A glycoengineered antigen exploiting a conserved protein O-glycosylation pathway in the Burkholderia genus for detection of glanders infections. PMID:33509023
An acetate-yielding diet imprints an immune and anti-microbial programme against enteric infection. PMID:33489123
Network Analysis Combining Proteomics and Metabolomics Reveals New Insights Into Early Responses of Eucalyptus grandis During Rust Infection. PMID:33488655
Potential biomarkers of childhood brain tumor identified by proteomics of cerebrospinal fluid from extraventricular drainage (EVD). PMID:33469081
Benchtop micro-mashing: high-throughput, robust, experimental beer brewing. PMID:33452289
Mitochondrial NAD+ Controls Nuclear ARTD1-Induced ADP-Ribosylation. PMID:33450210
Another layer of complexity in Staphylococcus aureus methionine biosynthesis control: unusual RNase III-driven T-box riboswitch cleavage determines met operon mRNA stability and decay. PMID:33450025
The role of small proteins in Burkholderia cenocepacia J2315 biofilm formation, persistence and intracellular growth. PMID:33447789
New Provisional Function of OmpA from Acinetobacter sp. Strain SA01 Based on Environmental Challenges. PMID:33436517
Dinoroseobacter shibae Outer Membrane Vesicles Are Enriched for the Chromosome Dimer Resolution Site dif. PMID:33436507
CSF SERPINA3 Levels Are Elevated in Patients With Progressive MS. PMID:33436375
Octenidine-based hydrogel shows anti-inflammatory and protease-inhibitory capacities in wounded human skin. PMID:33420112
Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity. PMID:33419940
ALK ligand ALKAL2 potentiates MYCN-driven neuroblastoma in the absence of ALK mutation. PMID:33411331
Proteomic analysis reveals ginsenoside Rb1 attenuates myocardial ischemia/reperfusion injury through inhibiting ROS production from mitochondrial complex I. PMID:33408776
Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis. PMID:33404502
The KLF14 Variant is Associated with Type 2 Diabetes and HbA1C Level. PMID:33389382
New mixture models for decoy-free false discovery rate estimation in mass spectrometry proteomics. PMID:33381824
State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing. PMID:33362867
Upregulation of polycistronic microRNA-143 and microRNA-145 in colonocytes suppresses colitis and inflammation-associated colon cancer. PMID:33356812
Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulation. PMID:33349623
Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life. PMID:33329546
Registered report protocol: Quantitative analysis of septin Cdc10-associated proteome in Cryptococcus neoformans. PMID:33315917
Dataset for proteomic analysis of Chlorella sorokiniana cells under cadmium stress. PMID:33294530
Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson's Disease. PMID:33276480
The Nucleosome Remodeling and Deacetylase Complex Has an Asymmetric, Dynamic, and Modular Architecture. PMID:33264611
diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition. PMID:33257825
Barley Root Proteome and Metabolome in Response to Cytokinin and Abiotic Stimuli. PMID:33250914
A primary human T-cell spectral library to facilitate large scale quantitative T-cell proteomics. PMID:33230158
Differential impact of BTK active site inhibitors on the conformational state of full-length BTK. PMID:33226337
Abundance of metalloprotease FtsH12 modulates chloroplast development in Arabidopsis thaliana. PMID:33216923
Analysis of complement deposition and processing on Chlamydia trachomatis. PMID:33206237
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS. PMID:33184295
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
The interactome of multifunctional HAX1 protein suggests its role in the regulation of energy metabolism, de-aggregation, cytoskeleton organization and RNA-processing. PMID:33146709
Mild Acid Elution and MHC Immunoaffinity Chromatography Reveal Similar Albeit Not Identical Profiles of the HLA Class I Immunopeptidome. PMID:33141586
Molecular Surgery: Proteomics of a Rare Genetic Disease Gives Insight into Common Causes of Blindness. PMID:33134897
Characteristics of the Protein Complexes and Pores Formed by Bacillus cereus Hemolysin BL. PMID:33114414
Identification of Molecular Network Associated with Neuroprotective Effects of Yashtimadhu (Glycyrrhiza glabra L.) by Quantitative Proteomics of Rotenone-Induced Parkinson's Disease Model. PMID:33110989
Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage. PMID:33109751
Pharmacodynamic modeling of synergistic birinapant/paclitaxel interactions in pancreatic cancer cells. PMID:33097020
Single-cell derived tumor organoids display diversity in HLA class I peptide presentation. PMID:33087703
Short-Chain Fatty Acids Modulate Metabolic Pathways and Membrane Lipids in Prevotella bryantii B14. PMID:33081314
Revealing mechanisms of mating plug function under sexual selection. PMID:33077605
DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics. PMID:33067471
Inclusion of African American/Black adults in a pilot brain proteomics study of Alzheimer's disease. PMID:33049317
Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis. PMID:33037224
The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans. PMID:33037220
Abscisic Acid-Triggered Persulfidation of the Cys Protease ATG4 Mediates Regulation of Autophagy by Sulfide. PMID:33037147
A Multi-Omics Approach Identifies Key Regulatory Pathways Induced by Long-Term Zinc Supplementation in Human Primary Retinal Pigment Epithelium. PMID:33036197
Protective effect of Vigna unguiculata extract against aging and neurodegeneration. PMID:33024055
Optimized incorporation of an unnatural fluorescent amino acid affords measurement of conformational dynamics governing high-fidelity DNA replication. PMID:33020184
Extracellular vesicles in patients in the acute phase of psychosis and after clinical improvement: an explorative study. PMID:32995075
Re-establishment of the epigenetic state and rescue of kinome deregulation in Ts65Dn mice upon treatment with green tea extract and environmental enrichment. PMID:32994493
Pharmacological and phosphoproteomic approaches to roles of protein kinase C in kappa opioid receptor-mediated effects in mice. PMID:32976891
Xylose Metabolism and the Effect of Oxidative Stress on Lipid and Carotenoid Production in Rhodotorula toruloides: Insights for Future Biorefinery. PMID:32974324
Development of robust targeted proteomics assays for cerebrospinal fluid biomarkers in multiple sclerosis. PMID:32963504
Proteomic Characterization of Host-Pathogen Interactions during Bovine Trophoblast Cell Line Infection by Neospora caninum. PMID:32942559
Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark. PMID:32933557
Intermittent Hypoxia Promotes Functional Neuroprotection from Retinal Ischemia in Untreated First-Generation Offspring: Proteomic Mechanistic Insights. PMID:32910134
Plasma proteins facilitates placental transfer of polystyrene particles. PMID:32907583
Cofilin-1 Is a Mechanosensitive Regulator of Transcription. PMID:32903827
High-Resolution Mass Spectrometry-Based Approaches for the Detection and Quantification of Peptidase Activity in Plasma. PMID:32899982
Mitochondrial CaMKII causes adverse metabolic reprogramming and dilated cardiomyopathy. PMID:32887881
Myocardial proteomic profile in pulmonary arterial hypertension. PMID:32873862
Akkermansia muciniphila uses human milk oligosaccharides to thrive in the early life conditions in vitro. PMID:32868839
Receptor-independent modulation of cAMP-dependent protein kinase and protein phosphatase signaling in cardiac myocytes by oxidizing agents. PMID:32868295
Immiscible inclusion bodies formed by polyglutamine and poly(glycine-alanine) are enriched with distinct proteomes but converge in proteins that are risk factors for disease and involved in protein degradation. PMID:32857759
Molecular abnormalities in autopsied brain tissue from the inferior horn of the lateral ventricles of nonagenarians and Alzheimer disease patients. PMID:32854643
Proteomic Analysis Reveals a Mitochondrial Remodeling of βTC3 Cells in Response to Nanotopography. PMID:32850772
Lipoproteins Contribute to the Anti-inflammatory Capacity of Lactobacillus plantarum WCFS1. PMID:32849426
ITGB3-mediated uptake of small extracellular vesicles facilitates intercellular communication in breast cancer cells. PMID:32848136
Collapsin Response Mediator Proteins: Novel Targets for Alzheimer's Disease. PMID:32804096
Reciprocal regulation of Aurora kinase A and ATIP3 in the control of metaphase spindle length. PMID:32789689
Mass-Spectrometric Detection of SARS-CoV-2 Virus in Scrapings of the Epithelium of the Nasopharynx of Infected Patients via Nucleocapsid N Protein. PMID:32786682
Impaired chondrocyte U3 snoRNA expression in osteoarthritis impacts the chondrocyte protein translation apparatus. PMID:32778764
A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition. PMID:32769205
Peptide-based quorum sensing systems in Paenibacillus polymyxa. PMID:32764104
Identification of Tomato Proteins That Interact With Replication Initiator Protein (Rep) of the Geminivirus TYLCV. PMID:32760417
Rescue of oxytocin response and social behaviour in a mouse model of autism. PMID:32760004
The Regulator PltZ Regulates a Putative ABC Transporter System PltIJKNOP of Pseudomonas aeruginosa ATCC 27853 in Response to the Antimicrobial 2,4-Diacetylphloroglucinol. PMID:32733400
Cellular response of Brevibacterium casei #NIOSBA88 to arsenic and chromium-a proteomic approach. PMID:32729030
Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity. PMID:32726803
Proteomic Study of the Survival and Resuscitation Mechanisms of Filamentous Persisters in an Evolved Escherichia coli Population from Cyclic Ampicillin Treatment. PMID:32723793
Discovery of treatment for nerve agents targeting a new metabolic pathway. PMID:32720192
Structural and functional studies of Arabidopsis thaliana legumain beta reveal isoform specific mechanisms of activation and substrate recognition. PMID:32719006
The Cyclin CYCA3;4 Is a Postprophase Target of the APC/CCCS52A2 E3-Ligase Controlling Formative Cell Divisions in Arabidopsis. PMID:32690720
Human cytomegalovirus protein pUL36: A dual cell death pathway inhibitor. PMID:32690704
Proteome activity landscapes of tumor cell lines determine drug responses. PMID:32686665
Na2CO3-responsive Photosynthetic and ROS Scavenging Mechanisms in Chloroplasts of Alkaligrass Revealed by Phosphoproteomics. PMID:32683046
Large-scale site-specific mapping of the O-GalNAc glycoproteome. PMID:32681153
Streptococcus pneumoniae metal homeostasis alters cellular metabolism. PMID:32676626
Intersection of TKS5 and FGD1/CDC42 signaling cascades directs the formation of invadopodia. PMID:32673397
Co-option of Plasmodium falciparum PP1 for egress from host erythrocytes. PMID:32669539
SNAIL Promotes Metastatic Behavior of Rhabdomyosarcoma by Increasing EZRIN and AKT Expression and Regulating MicroRNA Networks. PMID:32664538
Peroxiredoxin promotes longevity and H2O2-resistance in yeast through redox-modulation of protein kinase A. PMID:32662770
Radiosensitization by Kinase Inhibition Revealed by Phosphoproteomic Analysis of Pancreatic Cancer Cells. PMID:32651227
Comprehensive proteomics data on whole rice grain of selected pigmented and non-pigmented rice varieties using SWATH-MS approach. PMID:32642524
Calcium-binding proteins are altered in the cerebellum in schizophrenia. PMID:32639965
Microdissected pancreatic cancer proteomes reveal tumor heterogeneity and therapeutic targets. PMID:32634123
Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant. PMID:32616513
Seed Metabolism and Pathogen Resistance Enhancement in Pisum sativum During Colonization of Arbuscular Mycorrhizal Fungi: An Integrative Metabolomics-Proteomics Approach. PMID:32612631
FYN and ABL Regulate the Interaction Networks of the DCBLD Receptor Family. PMID:32606017
Chromokinesin KIF4A teams up with stathmin 1 to regulate abscission in a SUMO-dependent manner. PMID:32591481
Absence of miRNA-146a Differentially Alters Microglia Function and Proteome. PMID:32582192
In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis. PMID:32580392
ZapE/Afg1 interacts with Oxa1 and its depletion causes a multifaceted phenotype. PMID:32579605
Open Database Searching Enables the Identification and Comparison of Bacterial Glycoproteomes without Defining Glycan Compositions Prior to Searching. PMID:32576591
Interactome analysis reveals that lncRNA HULC promotes aerobic glycolysis through LDHA and PKM2. PMID:32572027
Reduced proteasome activity in the aging brain results in ribosome stoichiometry loss and aggregation. PMID:32558274
The Leader Peptide peTrpL Forms Antibiotic-Containing Ribonucleoprotein Complexes for Posttranscriptional Regulation of Multiresistance Genes. PMID:32546623
Dynamic rewiring of the human interactome by interferon signaling. PMID:32539747
Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes. PMID:32534439
Mass Spectrometric Mapping of Glycoproteins Modified by Tn-Antigen Using Solid-Phase Capture and Enzymatic Release. PMID:32510927
Engineered anti-inflammatory peptides inspired by mapping an evasin-chemokine interaction. PMID:32471866
Ubiquitome analysis reveals the involvement of lysine ubiquitination in the spermatogenesis process of adult buffalo (Bubalus bubalis) testis. PMID:32469046
High-throughput transcriptomic and proteomic profiling of mesenchymal-amoeboid transition in 3D collagen. PMID:32461585
Plasma protein expression differs between colorectal cancer patients depending on primary tumor location. PMID:32452655
Proteomic datasets of uninfected and Staphylococcus aureus-infected goat milk. PMID:32426435
Non-antibiotic pharmaceuticals enhance the transmission of exogenous antibiotic resistance genes through bacterial transformation. PMID:32424247
Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria. PMID:32418125
Development of a novel method for the quantification of tyrosine 39 phosphorylated α- and β-synuclein in human cerebrospinal fluid. PMID:32390785
Label-free plasma proteomics identifies haptoglobin-related protein as candidate marker of idiopathic pulmonary fibrosis and dysregulation of complement and oxidative pathways. PMID:32385381
OPTN recruitment to a Golgi-proximal compartment regulates immune signalling and cytokine secretion. PMID:32376785
Saliva proteomic patterns in patients with molar incisor hypomineralization. PMID:32371984
Immunopeptidomic Analysis Reveals That Deamidated HLA-bound Peptides Arise Predominantly from Deglycosylated Precursors. PMID:32357974
Glycomics and glycoproteomics of viruses: Mass spectrometry applications and insights toward structure-function relationships. PMID:32350911
The Cellular Response to Lanthanum Is Substrate Specific and Reveals a Novel Route for Glycerol Metabolism in Pseudomonas putida KT2440. PMID:32345644
Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. PMID:32344669
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of Citrus limon Response to Graft Inoculation by Candidatus Liberibacter asiaticus. PMID:32338516
Conditional deletion of Nedd4-2 in lung epithelial cells causes progressive pulmonary fibrosis in adult mice. PMID:32332792
Reactive oxygen species triggers unconventional secretion of antioxidants and Acb1. PMID:32328640
α2,3 linkage of sialic acid to a GPI anchor and an unpredicted GPI attachment site in human prion protein. PMID:32321762
miR-181a regulates p62/SQSTM1, parkin, and protein DJ-1 promoting mitochondrial dynamics in skeletal muscle aging. PMID:32291905
Human Neutrophils Produce Antifungal Extracellular Vesicles against Aspergillus fumigatus. PMID:32291301
Quantitative Proteomics of Human Heart Samples Collected In Vivo Reveal the Remodeled Protein Landscape of Dilated Left Atrium Without Atrial Fibrillation. PMID:32291283
A comprehensive analysis of sialolith proteins and the clinical implications. PMID:32265614
Adaptive Evolution of Geobacter sulfurreducens in Coculture with Pseudomonas aeruginosa. PMID:32265334
Temporal Dynamics of High-Density Lipoprotein Proteome in Diet-Controlled Subjects with Type 2 Diabetes. PMID:32235466
Relative Retention Time Estimation Improves N-Glycopeptide Identifications by LC-MS/MS. PMID:32223173
The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs. PMID:32217665
Synonymous Mutations in rpsT Lead to Ribosomal Assembly Defects That Can Be Compensated by Mutations in fis and rpoA. PMID:32210939
β-Catenin/CBP inhibition alters epidermal growth factor receptor fucosylation status in oral squamous cell carcinoma. PMID:32203567
Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions. PMID:32203420
An array of 60,000 antibodies for proteome-scale antibody generation and target discovery. PMID:32195335
Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia. PMID:32192169
CIP2A Constrains Th17 Differentiation by Modulating STAT3 Signaling. PMID:32171124
Multifunctional Acidocin 4356 Combats Pseudomonas aeruginosa through Membrane Perturbation and Virulence Attenuation: Experimental Results Confirm Molecular Dynamics Simulation. PMID:32169940
Comprehensive cell surface proteomics defines markers of classical, intermediate and non-classical monocytes. PMID:32165698
Proteomic analysis of somatic embryo development in Musa spp. cv. Grand Naine (AAA). PMID:32161309
Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly. PMID:32161263
A Uniquely Complex Mitochondrial Proteome from Euglena gracilis. PMID:32159766
Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon. PMID:32138667
Quantitative Profiling of the Human Substantia Nigra Proteome from Laser-capture Microdissected FFPE Tissue. PMID:32132230
Mutagenesis of a Quintuple Mutant Impaired in Environmental Responses Reveals Roles for CHROMATIN REMODELING4 in the Arabidopsis Floral Transition. PMID:32132131
Proteome profile of peripheral myelin in healthy mice and in a neuropathy model. PMID:32130108
Cyclosporine A inhibits MRTF-SRF signaling through Na+/K+ ATPase inhibition and actin remodeling. PMID:32123851
Identification of several plasma proteins whose levels in colorectal cancer patients differ depending on outcome. PMID:32123817
Human Hepatocyte Nuclear Factor 4-α Encodes Isoforms with Distinct Transcriptional Functions. PMID:32123031
Proteomic Investigation Uncovers Potential Targets and Target Sites of Pneumococcal Serine-Threonine Kinase StkP and Phosphatase PhpP. PMID:32117081
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format. PMID:32106352
Glycosaminoglycan Domain Mapping of Cellular Chondroitin/Dermatan Sulfates. PMID:32103093
Large-scale Identification of N-linked Intact Glycopeptides in Human Serum using HILIC Enrichment and Spectral Library Search. PMID:32102970
SPD_1495 Contributes to Capsular Polysaccharide Synthesis and Virulence in Streptococcus pneumoniae. PMID:32098834
β2-Adrenergic Signalling Promotes Cell Migration by Upregulating Expression of the Metastasis-Associated Molecule LYPD3. PMID:32098331
Interactome and F-Actin Interaction Analysis of Dictyostelium discoideum Coronin A. PMID:32098122
Phosphoinositide-binding proteins mark, shape and functionally modulate highly-diverged endocytic compartments in the parasitic protist Giardia lamblia. PMID:32092130
Arginine in C9ORF72 Dipolypeptides Mediates Promiscuous Proteome Binding and Multiple Modes of Toxicity. PMID:32086375
Changes in the proteome of sea urchin Paracentrotus lividus coelomocytes in response to LPS injection into the body cavity. PMID:32074628
Dataset on proteomic changes of whey protein after different heat treatment. PMID:32071994
Structural insights into the main S-layer unit of Deinococcus radiodurans reveal a massive protein complex with porin-like features. PMID:32071085
Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line. PMID:32058723
Erythrocyte-derived microvesicles induce arterial spasms in JAK2V617F myeloproliferative neoplasm. PMID:32045382
Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins. PMID:32042025
Precise timing of transcription by c-di-GMP coordinates cell cycle and morphogenesis in Caulobacter. PMID:32041947
Blood Contamination in CSF and Its Impact on Quantitative Analysis of Alpha-Synuclein. PMID:32033488
Phenotypic Adaption of Pseudomonas aeruginosa by Hacking Siderophores Produced by Other Microorganisms. PMID:32024770
Environmental Viscosity Modulates Interbacterial Killing during Habitat Transition. PMID:32019799
Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants. PMID:32015436
TRAM1 protein may support ER protein import by modulating the phospholipid bilayer near the lateral gate of the Sec61-channel. PMID:32013668
Proteome Analyses Reveal Macrophomina phaseolina's Survival Tools When Challenged by Burkholderia contaminans NZ. PMID:32010805
A Novel D-Galacturonate Fermentation Pathway in Lactobacillus suebicus Links Initial Reactions of the Galacturonate-Isomerase Route With the Phosphoketolase Pathway. PMID:32010092
Machine Learning Strategy That Leverages Large Data sets to Boost Statistical Power in Small-Scale Experiments. PMID:32009418
Community-intrinsic properties enhance keratin degradation from bacterial consortia. PMID:32004342
ADAPT identifies an ESCRT complex composition that discriminates VCaP from LNCaP prostate cancer cell exosomes. PMID:31989173
Unravelling the role of long non-coding RNA - LINC01087 in breast cancer. PMID:31989062
Cooperation of the NEIL3 and Fanconi anemia/BRCA pathways in interstrand crosslink repair. PMID:31980815
Thermotolerance and plasticity of camel somatic cells exposed to acute and chronic heat stress. PMID:31969994
Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions. PMID:31969649
Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring. PMID:31959955
The most abundant maternal lncRNA Sirena1 acts post-transcriptionally and impacts mitochondrial distribution. PMID:31956907
ExteNDing Proteome Coverage with Legumain as a Highly Specific Digestion Protease. PMID:31951383
Proteomic Responses to Drought Vary Widely Among Eight Diverse Genotypes of Rice (Oryza sativa). PMID:31935846
The phosphatase PAC1 acts as a T cell suppressor and attenuates host antitumor immunity. PMID:31932812
N-glycosylation Site Analysis Reveals Sex-related Differences in Protein N-glycosylation in the Rice Brown Planthopper (Nilaparvata lugens). PMID:31924694
A subcellular proteome atlas of the yeast Komagataella phaffii. PMID:31922548
Using Omics Technologies and Systems Biology to Identify Epitope Targets for the Development of Monoclonal Antibodies Against Antibiotic-Resistant Bacteria. PMID:31921119
Unbalanced Roles of Fungal Aggressiveness and Host Cultivars in the Establishment of the Fusarium Head Blight in Bread Wheat. PMID:31921038
RP-HPLC-ESI-IT Mass Spectrometry Reveals Significant Variations of the Human Salivary Protein Profile Associated with Predominantly Antibody Deficiencies. PMID:31916122
Norovirus infection results in eIF2α independent host translation shut-off and remodels the G3BP1 interactome evading stress granule formation. PMID:31905230
Comparison of the molecular and cellular phenotypes of common mouse syngeneic models with human tumors. PMID:31898484
Characterizing Patients with Recurrent Urinary Tract Infections in Vesicoureteral Reflux: A Pilot Study of the Urinary Proteome. PMID:31896675
Integrative genomics reveal a role for MCPIP1 in adipogenesis and adipocyte metabolism. PMID:31893310
The Arabidopsis thaliana N-recognin E3 ligase PROTEOLYSIS1 influences the immune response. PMID:31891113
Sweet google O' mine-The importance of online search engines for MS-facilitated, database-independent identification of peptide-encoded book prefaces: A EUPA YPIC challenge entry. PMID:31890548
Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition. PMID:31888964
Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses. PMID:31887112
Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation. PMID:31886458
Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. PMID:31876091
Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions. PMID:31873071
Structure Dependent Determination of Organophosphate Targets in Mammalian Tissues Using Activity-Based Protein Profiling. PMID:31872761
Characterization of a human liver reference material fit for proteomics applications. PMID:31852895
Network Analyses and Data Integration of Proteomics and Metabolomics From Leaves of Two Contrasting Varieties of Sugarcane in Response to Drought. PMID:31850025
TcellSubC: An Atlas of the Subcellular Proteome of Human T Cells. PMID:31849937
Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis. PMID:31848270
High-density chemical cross-linking for modeling protein interactions. PMID:31848235
Discovery of increased epidermal DNAH10 expression after regeneration of dermis in a randomized with-in person trial - reflections on psoriatic inflammation. PMID:31836722
Transcriptomic and Proteomic Responses of the Organohalide-Respiring Bacterium Desulfoluna spongiiphila to Growth with 2,6-Dibromophenol as the Electron Acceptor. PMID:31836581
Composition and processing activity of a semi-recombinant holo U7 snRNP. PMID:31819999
The functional landscape of the human phosphoproteome. PMID:31819260
Bisphenol A Activates an Innate Viral Immune Response Pathway. PMID:31816243
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy. PMID:31816088
Disruption of Acetyl-Lysine Turnover in Muscle Mitochondria Promotes Insulin Resistance and Redox Stress without Overt Respiratory Dysfunction. PMID:31813822
DYRK1A Overexpression Alters Cognition and Neural-Related Proteomic Pathways in the Hippocampus That Are Rescued by Green Tea Extract and/or Environmental Enrichment. PMID:31803016
Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi. PMID:31796751
The adaptive response to iron involves changes in energetic strategies in the pathogen Candida albicans. PMID:31788966
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. PMID:31780431
An omics perspective on drug target discovery platforms. PMID:31774113
Thromboinflammatory changes in plasma proteome of pregnant women with PCOS detected by quantitative label-free proteomics. PMID:31772271
Salivary Protein Panel to Diagnose Systolic Heart Failure. PMID:31766659
A mass spectrometry guided approach for the identification of novel vaccine candidates in gram-negative pathogens. PMID:31758014
Comparative proteome and metabolome analyses of latex-exuding and non-exuding Taraxacum koksaghyz roots provide insights into laticifer biology. PMID:31740929
BMP signaling inhibition in Drosophila secondary cells remodels the seminal proteome and self and rival ejaculate functions. PMID:31740617
Lineage-Restricted Regulation of SCD and Fatty Acid Saturation by MITF Controls Melanoma Phenotypic Plasticity. PMID:31733993
Loss of O-Linked Protein Glycosylation in Burkholderia cenocepacia Impairs Biofilm Formation and Siderophore Activity and Alters Transcriptional Regulators. PMID:31722994
Transcription-coupled nucleotide excision repair is coordinated by ubiquitin and SUMO in response to ultraviolet irradiation. PMID:31722399
Proteomic analysis of eleven tissues in the Chinese giant salamander (Andrias davidianus). PMID:31712686
Impact of Na+-Translocating NADH:Quinone Oxidoreductase on Iron Uptake and nqrM Expression in Vibrio cholerae. PMID:31712283
Effects of Simulated Space Radiations on the Tomato Root Proteome. PMID:31708949
Quantitative Proteomics Reveal Peroxiredoxin Perturbation Upon Persistent Lymphocytic Choriomeningitis Virus Infection in Human Cells. PMID:31708904
Proteome Profiling of Cerebral Vessels in Rhesus Macaques: Dysregulation of Antioxidant Activity and Extracellular Matrix Proteins Contributes to Cerebrovascular Aging in Rhesus Macaques. PMID:31708766
Trans-Synaptic Signaling through the Glutamate Receptor Delta-1 Mediates Inhibitory Synapse Formation in Cortical Pyramidal Neurons. PMID:31704028
Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition. PMID:31699904
Co-regulation map of the human proteome enables identification of protein functions. PMID:31690884
Dissecting the Shared and Context-Dependent Pathways Mediated by the p140Cap Adaptor Protein in Cancer and in Neurons. PMID:31681758
Proteomic changes in the milk of water buffaloes (Bubalus bubalis) with subclinical mastitis due to intramammary infection by Staphylococcus aureus and by non-aureus staphylococci. PMID:31676851
Dataset of Nematostella vectensis Hsp70 isoform interactomes upon heat shock. PMID:31673583
Ageing and amyloidosis underlie the molecular and pathological alterations of tau in a mouse model of familial Alzheimer's disease. PMID:31673052
Class I HDAC inhibitors enhance YB-1 acetylation and oxidative stress to block sarcoma metastasis. PMID:31668005
The olfactory secretome varies according to season in female sheep and goat. PMID:31666027
Molecular Diversification of the Seminal Fluid Proteome in a Recently Diverged Passerine Species Pair. PMID:31665510
Phosphoproteomics reveals that the hVPS34 regulated SGK3 kinase specifically phosphorylates endosomal proteins including Syntaxin-7, Syntaxin-12, RFIP4 and WDR44. PMID:31665227
Biological plasticity rescues target activity in CRISPR knock outs. PMID:31659326
Brain Region-Specific nAChR and Associated Protein Abundance Alterations Following Chronic Nicotine and/or Menthol Exposure. PMID:31657575
The Interactome analysis of the Respiratory Syncytial Virus protein M2-1 suggests a new role in viral mRNA metabolism post-transcription. PMID:31649314
Glycogen Metabolism Supports Photosynthesis Start through the Oxidative Pentose Phosphate Pathway in Cyanobacteria. PMID:31649110
HAX1 impact on collective cell migration, cell adhesion, and cell shape is linked to the regulation of actomyosin contractility. PMID:31644363
Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes. PMID:31611696
Meningeal γδ T cell-derived IL-17 controls synaptic plasticity and short-term memory. PMID:31604844
Genomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts. PMID:31595051
A small molecule interacts with VDAC2 to block mouse BAK-driven apoptosis. PMID:31591564
Functional Genomics of the Retina to Elucidate its Construction and Deconstruction. PMID:31590277
Changes in the microsomal proteome of tomato fruit during ripening. PMID:31586085
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens. PMID:31585998
A homology-guided, genome-based proteome for improved proteomics in the alloploid Nicotiana benthamiana. PMID:31585525
The ubiquitin-like modifier FAT10 interferes with SUMO activation. PMID:31575873
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). PMID:31562384
SWATH-based proteomics reveals processes associated with immune evasion and metastasis in poor prognosis colorectal tumours. PMID:31560832
Overexpression of HMG-CoA synthase promotes Arabidopsis root growth and adversely affects glucosinolate biosynthesis. PMID:31557302
PepSAVI-MS Reveals a Proline-rich Antimicrobial Peptide in Amaranthus tricolor. PMID:31557021
Mice depleted for Exchange Proteins Directly Activated by cAMP (Epac) exhibit irregular liver regeneration in response to partial hepatectomy. PMID:31551444
The Core Proteome of Biofilm-Grown Clinical Pseudomonas aeruginosa Isolates. PMID:31547513
Proteome Profiling of the Exhaled Breath Condensate after Long-Term Spaceflights. PMID:31547269
Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome. PMID:31546776
Metallopeptidase inhibitor 1 (TIMP-1) promotes receptor tyrosine kinase c-Kit signaling in colorectal cancer. PMID:31545548
STK38 kinase acts as XPO1 gatekeeper regulating the nuclear export of autophagy proteins and other cargoes. PMID:31544310
Mass spectrometric identification of candidate RNA-binding proteins associated with Transition Nuclear Protein mRNA in the mouse testis. PMID:31541158
Regulation of the endosomal SNX27-retromer by OTULIN. PMID:31541095
Cysteine oxidation triggers amyloid fibril formation of the tumor suppressor p16INK4A. PMID:31539802
A shared core microbiome in soda lakes separated by large distances. PMID:31530813
Liver proteome dataset of Sparus aurata exposed to low temperatures. PMID:31528672
Ligand-dependent spatiotemporal signaling profiles of the μ-opioid receptor are controlled by distinct protein-interaction networks. PMID:31515267
Reticulocyte and red blood cell deformation triggers specific phosphorylation events. PMID:31506283
HDL flux is higher in patients with nonalcoholic fatty liver disease. PMID:31503515
Cell-type-specific profiling of brain mitochondria reveals functional and molecular diversity. PMID:31501572
Palaeoproteomic identification of breast milk protein residues from the archaeological skeletal remains of a neonatal dog. PMID:31492911
Predictive modeling of therapeutic response to chondroitin sulfate/glucosamine hydrochloride in knee osteoarthritis. PMID:31489155
Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan. PMID:31488564
Polyubiquitin Chains Linked by Lysine Residue 48 (K48) Selectively Target Oxidized Proteins In Vivo. PMID:31482721
Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples. PMID:31471496
A dataset describing a suite of novel antibody reagents for the RAS signaling network. PMID:31467290
A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins. PMID:31462935
Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics. PMID:31462278
Extremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units. PMID:31448616
Customizing Functionalized Cofactor Mimics to Study the Human Pyridoxal 5'-Phosphate-Binding Proteome. PMID:31447350
Limited Oxidative Stress Favors Resistance to Skeletal Muscle Atrophy in Hibernating Brown Bears (Ursus Arctos). PMID:31443506
A de novo evolved gene in the house mouse regulates female pregnancy cycles. PMID:31436535
Taxonomic and functional characterization of a microbial community from a volcanic englacial ecosystem in Deception Island, Antarctica. PMID:31434915
Strong anion exchange-mediated phosphoproteomics reveals extensive human non-canonical phosphorylation. PMID:31433507
Divergent allocation of sperm and the seminal proteome along a competition gradient in Drosophila melanogaster. PMID:31431535
Protein replenishment in pitcher fluids of Nepenthes × ventrata revealed by quantitative proteomics (SWATH-MS) informed by transcriptomics. PMID:31422552
Interplay between the bacterial protein deacetylase CobB and the second messenger c-di-GMP. PMID:31418899
Phellem Cell-Wall Components Are Discriminants of Cork Quality in Quercus suber. PMID:31417580
Fecal Metaproteomic Analysis Reveals Unique Changes of the Gut Microbiome Functions After Consumption of Sourdough Carasau Bread. PMID:31417524
Proteomics and post-secretory content adjustment of Nicotiana tabacum nectar. PMID:31414205
Phosphoproteomic analysis reveals plant DNA damage signalling pathways with a functional role for histone H2AX phosphorylation in plant growth under genotoxic stress. PMID:31410901
Therapeutic Targeting of RNA Splicing Catalysis through Inhibition of Protein Arginine Methylation. PMID:31408619
A Novel Pyrazolopyrimidine Ligand of Human PGK1 and Stress Sensor DJ1 Modulates the Shelterin Complex and Telomere Length Regulation. PMID:31401411
Parallel Evolution of Complex Centipede Venoms Revealed by Comparative Proteotranscriptomic Analyses. PMID:31396628
The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation. PMID:31384064
Multi-omics Analyses Reveal Synergistic Carbohydrate Metabolism in Streptococcus mutans-Candida albicans Mixed-Species Biofilms. PMID:31383746
An Insight into the Proteome of Uveal Melanoma-Derived Ectosomes Reveals the Presence of Potentially Useful Biomarkers. PMID:31382537
Quantitative phosphoproteome and proteome analyses emphasize the influence of phosphorylation events during the nutritional stress of Trypanosoma cruzi: the initial moments of in vitro metacyclogenesis. PMID:31368045
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. PMID:31363752
Defining Protein Pattern Differences Among Molecular Subtypes of Diffuse Gliomas Using Mass Spectrometry. PMID:31353322
Comparative proteomics analysis reveals the difference during antler regeneration stage between red deer and sika deer. PMID:31346498
Kinome profiling of non-Hodgkin lymphoma identifies Tyro3 as a therapeutic target in primary effusion lymphoma. PMID:31346082
Interactome of Glyceraldehyde-3-Phosphate Dehydrogenase Points to the Existence of Metabolons in Paracoccidioides lutzii. PMID:31338083
Charge-Mediated Pyrin Oligomerization Nucleates Antiviral IFI16 Sensing of Herpesvirus DNA. PMID:31337724
Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis. PMID:31337343
Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition. PMID:31333693
PARK2 Mutation Causes Metabolic Disturbances and Impaired Survival of Human iPSC-Derived Neurons. PMID:31333417
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Multibatch TMT Reveals False Positives, Batch Effects and Missing Values. PMID:31332098
A Systems-level Characterization of the Differentiation of Human Embryonic Stem Cells into Mesenchymal Stem Cells. PMID:31332097
N-terminal β-strand underpins biochemical specialization of an ATG8 isoform. PMID:31329577
Chronic shisha exposure alters phosphoproteome of oral keratinocytes. PMID:31321732
Modulation of posterior intestinal mucosal proteome in rainbow trout (Oncorhynchus mykiss) after Yersinia ruckeri infection. PMID:31315687
Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-statistics with Peptide Quantification Concordance. PMID:31311848
A Chemical Proteomic Analysis of Illudin-Interacting Proteins. PMID:31310394
Oxygen-dependent bond formation with FIH regulates the activity of the client protein OTUB1. PMID:31299612
Lamin A molecular compression and sliding as mechanisms behind nucleoskeleton elasticity. PMID:31296869
High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data. PMID:31294064
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. PMID:31290668
Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata. PMID:31286648
Inhibiting ubiquitination causes an accumulation of SUMOylated newly synthesized nuclear proteins at PML bodies. PMID:31285264
The Farmed Atlantic Salmon (Salmo salar) Skin-Mucus Proteome and Its Nutrient Potential for the Resident Bacterial Community. PMID:31284681
Neutrophil extracellular traps (NET) induced by different stimuli: A comparative proteomic analysis. PMID:31283757
Genome-wide functional association networks: background, data & state-of-the-art resources. PMID:31281921
Analysis of the Escherichia coli extracellular vesicle proteome identifies markers of purity and culture conditions. PMID:31275533
Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome. PMID:31275266
Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes. PMID:31274288
Evolutionary Proteomics Reveals Distinct Patterns of Complexity and Divergence between Lepidopteran Sperm Morphs. PMID:31268533
Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. PMID:31266899
The Effects of Spaceflight Factors on the Human Plasma Proteome, Including Both Real Space Missions and Ground-Based Experiments. PMID:31261866
Divergent Polypharmacology-Driven Cellular Activity of Structurally Similar Multi-Kinase Inhibitors through Cumulative Effects on Individual Targets. PMID:31257184
Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking. PMID:31253831
Rapid Aldosterone-Mediated Signaling in the DCT Increases Activity of the Thiazide-Sensitive NaCl Cotransporter. PMID:31253651
Low-Background Acyl-Biotinyl Exchange Largely Eliminates the Coisolation of Non-S-Acylated Proteins and Enables Deep S-Acylproteomic Analysis. PMID:31251020
Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications. PMID:31246970
Outlining the Grb2 interactome data and its interacting partners in HEK293 cells in absence and presence of epidermal growth factor. PMID:31245515
iTRAQ-based quantitative proteome analysis reveals metabolic changes between a cleistogamous wheat mutant and its wild-type wheat counterpart. PMID:31245178
Urinary tract colonization is enhanced by a plasmid that regulates uropathogenic Acinetobacter baumannii chromosomal genes. PMID:31235751
Application of Bioactive Thermal Proteome Profiling to Decipher the Mechanism of Action of the Lipid Lowering 132-Hydroxy-pheophytin Isolated from a Marine Cyanobacteria. PMID:31234367
Dynamic remodeling of the interactomes of Nematostella vectensis Hsp70 isoforms under heat shock. PMID:31233900
DEG10 contributes to mitochondrial proteostasis, root growth, and seed yield in Arabidopsis. PMID:31225599
Multi-omics insights into functional alterations of the liver in insulin-deficient diabetes mellitus. PMID:31221621
Histopathological and proteomic analyses identify integrin-β1 as a potential mediator of phlebosclerosis in uremic patients. PMID:31214872
Serine-Threonine Kinases Encoded by Split hipA Homologs Inhibit Tryptophanyl-tRNA Synthetase. PMID:31213559
Shigella promotes major alteration of gut epithelial physiology and tissue invasion by shutting off host intracellular transport. PMID:31209035
Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages. PMID:31208443
Proteomic analysis of gemcitabine-resistant pancreatic cancer cells reveals that microtubule-associated protein 2 upregulation associates with taxane treatment. PMID:31205498
Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia). PMID:31203412
Multi omics analysis of fibrotic kidneys in two mouse models. PMID:31201317
Protein aggregation mediates stoichiometry of protein complexes in aneuploid cells. PMID:31196865
Pharmacoproteomics reveal novel protective activity of bromodomain containing 4 inhibitors on vascular homeostasis in TLR3-mediated airway remodeling. PMID:31195152
Characterization of a novel glycosylated glutathione transferase of Onchocerca ochengi, closest relative of the human river blindness parasite. PMID:31190665
Alteration of Proteomes in First-Generation Cultures of Bacillus pumilus Spores Exposed to Outer Space. PMID:31186338
Posttranslational Modifications Drive Protein Stability to Control the Dynamic Beer Brewing Proteome. PMID:31186289
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2. PMID:31182796
Proteomics of Bordetella pertussis whole-cell and acellular vaccines. PMID:31182148
Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations. PMID:31152013
Clinical biomarker discovery by SWATH-MS based label-free quantitative proteomics: impact of criteria for identification of differentiators and data normalization method. PMID:31151397
Plasmodium pseudo-Tyrosine Kinase-like binds PP1 and SERA5 and is exported to host erythrocytes. PMID:31148576
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. PMID:31142855
Plant-derived virus-like particle vaccines drive cross-presentation of influenza A hemagglutinin peptides by human monocyte-derived macrophages. PMID:31123605
Proteomic Analysis of Vocal Fold Fibroblasts Exposed to Cigarette Smoke Extract: Exploring the Pathophysiology of Reinke's Edema. PMID:31123107
Proteases Underground: Analysis of the Maize Root Apoplast Identifies Organ Specific Papain-Like Cysteine Protease Activity. PMID:31114592
Proteomic and Metabolomic Profiling of Deinococcus radiodurans Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions. PMID:31110498
Proteomic insight into the pathogenesis of CAPN5-vitreoretinopathy. PMID:31110225
Sum of peak intensities outperforms peak area integration in iTRAQ protein expression measurement by LC-MS/MS using a TripleTOF 5600+ platform. PMID:31110078
Proteome-wide detection of S-nitrosylation targets and motifs using bioorthogonal cleavable-linker-based enrichment and switch technique. PMID:31097712
Glycoproteogenomics: A Frequent Gene Polymorphism Affects the Glycosylation Pattern of the Human Serum Fetuin/α-2-HS-Glycoprotein. PMID:31097672
Nucleoporin Nup155 is part of the p53 network in liver cancer. PMID:31089132
Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications. PMID:31088857
The Ser/Thr Kinase PrkC Participates in Cell Wall Homeostasis and Antimicrobial Resistance in Clostridium difficile. PMID:31085703
Metabolic reprogramming involving glycolysis in the hibernating brown bear skeletal muscle. PMID:31080489
Exploring the Potential Role of Moonlighting Function of the Surface-Associated Proteins From Mycobacterium bovis BCG Moreau and Pasteur by Comparative Proteomic. PMID:31080447
Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls. PMID:31080378
Cryo-Electron Tomography and Proteomics studies of centrosomes from differentiated quiescent thymocytes. PMID:31076588
SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18. PMID:31076518
Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics. PMID:31073891
Multi-omics characterization of the necrotrophic mycoparasite Saccharomycopsis schoenii. PMID:31071195
Exosomal Transport of Hepatocyte-Derived Drug-Modified Proteins to the Immune System. PMID:31070244
In Vivo Proteome of Pseudomonas aeruginosa in Airways of Cystic Fibrosis Patients. PMID:31060355
Deciphering the Roles of N-Glycans on Collagen-Platelet Interactions. PMID:31055923
Comprehensive proteome and phosphoproteome profiling shows negligible influence of RNAlater on protein abundance and phosphorylation. PMID:31049047
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study. PMID:31045356
Photocatalytic Protein Damage by Silver Nanoparticles Circumvents Bacterial Stress Response and Multidrug Resistance. PMID:31043515
Structural plasticity of actin-spectrin membrane skeleton and functional role of actin and spectrin in axon degeneration. PMID:31042147
PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms. PMID:31040227
The interactome of a family of potential methyltransferases in HeLa cells. PMID:31036863
Navigating in vitro bioactivity data by investigating available resources using model compounds. PMID:31036807
Light-dependent N-terminal phosphorylation of LHCSR3 and LHCB4 are interlinked in Chlamydomonas reinhardtii. PMID:31033075
Campylobacter jejuni Demonstrates Conserved Proteomic and Transcriptomic Responses When Co-cultured With Human INT 407 and Caco-2 Epithelial Cells. PMID:31031730
The synovial fluid proteome differentiates between septic and nonseptic articular pathologies. PMID:31028944
Brain Citrullination Patterns and T Cell Reactivity of Cerebrospinal Fluid-Derived CD4+ T Cells in Multiple Sclerosis. PMID:31024521
Novel CSF biomarkers in genetic frontotemporal dementia identified by proteomics. PMID:31019994
Vps11 and Vps18 of Vps-C membrane traffic complexes are E3 ubiquitin ligases and fine-tune signalling. PMID:31015428
Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer. PMID:31011308
Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community. PMID:31003499
Molecular Mechanisms of Tungsten Toxicity Differ for Glycine max Depending on Nitrogen Regime. PMID:31001297
Elevated carbon dioxide levels lead to proteome-wide alterations for optimal growth of a fast-growing cyanobacterium, Synechococcus elongatus PCC 11801. PMID:31000743
Circadian Analysis of the Mouse Cerebellum Proteome. PMID:30991638
Plasma protein adsorption on Fe3O4-PEG nanoparticles activates the complement system and induces an inflammatory response. PMID:30988608
More than a Toxin: Protein Inventory of Clostridium tetani Toxoid Vaccines. PMID:30988272
Dark metabolism: a molecular insight into how the Antarctic sea-ice diatom Fragilariopsis cylindrus survives long-term darkness. PMID:30985935
A Protein-Linger Strategy Keeps the Plant On-Hold After Rehydration of Drought-Stressed Beta vulgaris. PMID:30984226
Identification of O-Glcnacylated Proteins in Trypanosoma cruzi. PMID:30984116
Identification, Quantification, and System Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets. PMID:30977292
An Interaction Network of the Human SEPT9 Established by Quantitative Mass Spectrometry. PMID:30975701
Physical Activity Associated Proteomics of Skeletal Muscle: Being Physically Active in Daily Life May Protect Skeletal Muscle From Aging. PMID:30971946
Scavenging organic nitrogen and remodelling lipid metabolism are key survival strategies adopted by the endophytic fungi, Serendipita vermifera and Serendipita bescii to alleviate nitrogen and phosphorous starvation in vitro. PMID:30970176
Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula. PMID:30962361
Defining the RNA interactome by total RNA-associated protein purification. PMID:30962360
Proteomic analysis of the similarities and differences of soil drought and polyethylene glycol stress responses in wheat (Triticum aestivum L.). PMID:30953278
Miniaturised interaction proteomics on a microfluidic platform with ultra-low input requirements. PMID:30948724
Analysis of 1508 Plasma Samples by Capillary-Flow Data-Independent Acquisition Profiles Proteomics of Weight Loss and Maintenance. PMID:30948622
Insertion sequences drive the emergence of a highly adapted human pathogen. PMID:30946644
Intestinal Epithelial Cells and the Microbiome Undergo Swift Reprogramming at the Inception of Colonic Citrobacter rodentium Infection. PMID:30940698
Benzo[ a]pyrene Induction of Glutathione S-Transferases: An Activity-Based Protein Profiling Investigation. PMID:30938511
Quantitative Microproteomics Based Characterization of the Central and Peripheral Nervous System of a Mouse Model of Krabbe Disease. PMID:30926673
EZHIP/CXorf67 mimics K27M mutated oncohistones and functions as an intrinsic inhibitor of PRC2 function in aggressive posterior fossa ependymoma. PMID:30923826
Ubiquitin C-terminal hydrolase L1 (UCH-L1) loss causes neurodegeneration by altering protein turnover in the first postnatal weeks. PMID:30923110
Proteomics of Asrij Perturbation in Drosophila Lymph Glands for Identification of New Regulators of Hematopoiesis. PMID:30923041
The ABCB7-Like Transporter PexA in Rhodobacter capsulatus Is Involved in the Translocation of Reactive Sulfur Species. PMID:30918498
Anaerobic oxidation of ethane by archaea from a marine hydrocarbon seep. PMID:30918404
Combined Transcriptome and Proteome Analysis of Immortalized Human Keratinocytes Expressing Human Papillomavirus 16 (HPV16) Oncogenes Reveals Novel Key Factors and Networks in HPV-Induced Carcinogenesis. PMID:30918060
Silencing of carbonic anhydrase I enhances the malignant potential of exosomes secreted by prostatic tumour cells. PMID:30916466
Caught in a Trap? Proteomic Analysis of Neutrophil Extracellular Traps in Rheumatoid Arthritis and Systemic Lupus Erythematosus. PMID:30915077
Metaproteomic and 16S rRNA Gene Sequencing Analysis of the Infant Fecal Microbiome. PMID:30901843
Autoantibody Biomarker Discovery in Primary Open Angle Glaucoma Using Serological Proteome Analysis (SERPA). PMID:30899261
Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis. PMID:30899004
A post-translational modification of human Norovirus capsid protein attenuates glycan binding. PMID:30899001
MDC1 Interacts with TOPBP1 to Maintain Chromosomal Stability during Mitosis. PMID:30898438
Quantitative Proteomics Links the Intermediate Filament Nestin to Resistance to Targeted BRAF Inhibition in Melanoma Cells. PMID:30890564
Nitric oxide-dependent anaerobic ammonium oxidation. PMID:30886150
Multiplex targeted mass spectrometry assay for one-shot flavivirus diagnosis. PMID:30886083
Human chorionic gonadotrophin pharmaceutical formulations of urinary origin display high levels of contaminant proteins-A label-free quantitation proteomics study. PMID:30883802
Label-free absolute protein quantification with data-independent acquisition. PMID:30880166
Heterogeneous clinical phenotypes and cerebral malformations reflected by rotatin cellular dynamics. PMID:30879067
The chaperone ERp29 is required for tunneling nanotube formation by stabilizing MSec. PMID:30877198
Lysosomal targeting of the ABC transporter TAPL is determined by membrane-localized charged residues. PMID:30877195
LipidII interaction with specific residues of Mycobacterium tuberculosis PknB extracytoplasmic domain governs its optimal activation. PMID:30874556
Cytological, Biochemical and Molecular Events of the Embryogenic State in Douglas-fir (Pseudotsuga menziesii [Mirb.]). PMID:30873184
Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3. PMID:30867594
Quantitative proteomic changes in LPS-activated monocyte-derived dendritic cells: A SWATH-MS study. PMID:30867486
Cationic gold nanoparticles elicit mitochondrial dysfunction: a multi-omics study. PMID:30867451
Light-Controlled Affinity Purification of Protein Complexes Exemplified by the Resting ZAP70 Interactome. PMID:30863395
Proteomic analysis reveals that sugar and fatty acid metabolisms play a central role in sterility of the male-sterile line 1355A of cotton. PMID:30862676
IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments. PMID:30855969
A Study into the ADP-Ribosylome of IFN-γ-Stimulated THP-1 Human Macrophage-like Cells Identifies ARTD8/PARP14 and ARTD9/PARP9 ADP-Ribosylation. PMID:30848916
Thylakoid Localized Type 2 NAD(P)H Dehydrogenase NdbA Optimizes Light-Activated Heterotrophic Growth of Synechocystis sp. PCC 6803. PMID:30847494
Neisseria gonorrhoeae MlaA influences gonococcal virulence and membrane vesicle production. PMID:30845186
More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics. PMID:30837968
Differential miRNA expression profile and proteome in plasma exosomes from patients with paroxysmal nocturnal hemoglobinuria. PMID:30837665
Proteomic Analysis of Arabidopsis pldα1 Mutants Revealed an Important Role of Phospholipase D Alpha 1 in Chloroplast Biogenesis. PMID:30833950
Pro-inflammatory Cytokines Alter the Immunopeptidome Landscape by Modulation of HLA-B Expression. PMID:30833945
Glomerular filtrate proteins in acute cardiorenal syndrome. PMID:30829647
Anti α-enolase antibody is a novel autoimmune biomarker for unexplained recurrent miscarriages. PMID:30827932
Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos. PMID:30827088
Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. PMID:30824708
Plasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease. PMID:30824564
The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulation. PMID:30822303
YESdb: integrative analysis of environmental stress in yeast. PMID:30821814
Sequential Digestion with Trypsin and Elastase in Cross-Linking Mass Spectrometry. PMID:30817130
Colonic epithelial cell diversity in health and inflammatory bowel disease. PMID:30814735
Urinary Proteomics Profiles Are Useful for Detection of Cancer Biomarkers and Changes Induced by Therapeutic Procedures. PMID:30813269
Serum biomarkers identification by iTRAQ and verification by MRM: S100A8/S100A9 levels predict tumor-stroma involvement and prognosis in Glioblastoma. PMID:30808902
Molecular characterization of Histomonas meleagridis exoproteome with emphasis on protease secretion and parasite-bacteria interaction. PMID:30807611
A homopolymeric adenosine tract in the promoter region of nspA influences factor H-mediated serum resistance in Neisseria meningitidis. PMID:30804422
Depletion of the RNA binding protein HNRNPD impairs homologous recombination by inhibiting DNA-end resection and inducing R-loop accumulation. PMID:30799487
In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes. PMID:30795634
Oxylipins mediate cell-to-cell communication in Pseudomonas aeruginosa. PMID:30793044
Metabolic, Anti-apoptotic and Immune Evasion Strategies of Primary Human Myeloma Cells Indicate Adaptations to Hypoxia. PMID:30792264
Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice. PMID:30792016
Pre-fractionation Extends but also Creates a Bias in the Detectable HLA Class Ι Ligandome. PMID:30784271
The flavonoid 4,4'-dimethoxychalcone promotes autophagy-dependent longevity across species. PMID:30783116
Multiplexed Relative Quantitation with Isobaric Tagging Mass Spectrometry Reveals Class I Major Histocompatibility Complex Ligand Dynamics in Response to Doxorubicin. PMID:30779550
Unveiling Kiwifruit Metabolite and Protein Changes in the Course of Postharvest Cold Storage. PMID:30778366
Inhibition of histone methyltransferase DOT1L silences ERα gene and blocks proliferation of antiestrogen-resistant breast cancer cells. PMID:30775443
Development of a Sensitive, Scalable Method for Spatial, Cell-Type-Resolved Proteomics of the Human Brain. PMID:30768908
Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase. PMID:30767890
A rapid methods development workflow for high-throughput quantitative proteomic applications. PMID:30763335
Modulation of the ATM/autophagy pathway by a G-quadruplex ligand tips the balance between senescence and apoptosis in cancer cells. PMID:30759257
MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides. PMID:30755466
Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis. PMID:30753577
Generation of a zebrafish SWATH-MS spectral library to quantify 10,000 proteins. PMID:30747917
Life history shapes variation in egg composition in the blue tit Cyanistes caeruleus. PMID:30740542
Binding Specificity of Native Odorant-Binding Protein Isoforms Is Driven by Phosphorylation and O-N-Acetylglucosaminylation in the Pig Sus scrofa. PMID:30740091
A network of chaperones prevents and detects failures in membrane protein lipid bilayer integration. PMID:30737405
Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency. PMID:30733432
Comparison of Human and Murine Enteroendocrine Cells by Transcriptomic and Peptidomic Profiling. PMID:30733330
Signal Peptide Peptidase-Like 2c (SPPL2c) impairs vesicular transport and cleavage of SNARE proteins. PMID:30733281
The intramembrane protease SPPL2c promotes male germ cell development by cleaving phospholamban. PMID:30733280
The Antarctic psychrophiles Chlamydomonas spp. UWO241 and ICE-MDV exhibit differential restructuring of photosystem I in response to iron. PMID:30729447
The Schistosomiasis SpleenOME: Unveiling the Proteomic Landscape of Splenomegaly Using Label-Free Mass Spectrometry. PMID:30728824
Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex. PMID:30726745
Reprogramming of Trypanosoma cruzi metabolism triggered by parasite interaction with the host cell extracellular matrix. PMID:30726203
Comprehensive characterization of the adult ND4 Swiss Webster mouse retina: Using discovery-based mass spectrometry to decipher the total proteome and phosphoproteome. PMID:30713425
Identification of Early Salinity Stress-Responsive Proteins in Dunaliella salina by isobaric tags for relative and absolute quantitation (iTRAQ)-Based Quantitative Proteomic Analysis. PMID:30704074
Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex. PMID:30703164
Post-translational Regulation of FNIP1 Creates a Rheostat for the Molecular Chaperone Hsp90. PMID:30699359
Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in rats. PMID:30699108
Reversible SAHH inhibitor protects against glomerulonephritis in lupus-prone mice by downregulating renal α-actinin-4 expression and stabilizing integrin-cytoskeleton linkage. PMID:30696480
Intricate Crosstalk Between Lipopolysaccharide, Phospholipid and Fatty Acid Metabolism in Escherichia coli Modulates Proteolysis of LpxC. PMID:30692974
First Viruses Infecting the Marine Diatom Guinardia delicatula. PMID:30687251
Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. PMID:30687244
Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation. PMID:30680888
Off-target based drug repurposing opportunities for tivantinib in acute myeloid leukemia. PMID:30679640
PIM1 kinase promotes gallbladder cancer cell proliferation via inhibition of proline-rich Akt substrate of 40 kDa (PRAS40). PMID:30666556
Integrated dataset on acute phase protein response in chicken challenged with Escherichia coli lipopolysaccharide endotoxin. PMID:30666314
Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection. PMID:30659199
Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics. PMID:30659192
Multiomics resolution of molecular events during a day in the life of Chlamydomonas. PMID:30659148
Multi-isotype Glycoproteomic Characterization of Serum Antibody Heavy Chains Reveals Isotype- and Subclass-Specific N-Glycosylation Profiles. PMID:30659065
Proteomic analysis of the rice (Oryza officinalis) provides clues on molecular tagging of proteins for brown planthopper resistance. PMID:30658570
Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery. PMID:30656201
Characterization of the Src-regulated kinome identifies SGK1 as a key mediator of Src-induced transformation. PMID:30655532
Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes. PMID:30654742
Use of rare-earth elements in the phyllosphere colonizer Methylobacterium extorquens PA1. PMID:30653750
Exosomes harbor B cell targets in pancreatic adenocarcinoma and exert decoy function against complement-mediated cytotoxicity. PMID:30651550
Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry. PMID:30651306
Noncovalently Associated Peptides Observed during Liquid Chromatography-Mass Spectrometry and Their Effect on Cross-Link Analyses. PMID:30649854
ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies. PMID:30649171
Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580. PMID:30645593
Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus. PMID:30642035
Quantitative Proteomics Reveals the Dynamic Protein Landscape during Initiation of Human Th17 Cell Polarization. PMID:30641411
Peptidomics Analysis of Milk Protein-Derived Peptides Released over Time in the Preterm Infant Stomach. PMID:30638015
Macrophage Phosphoproteome Analysis Reveals MINCLE-dependent and -independent Mycobacterial Cord Factor Signaling. PMID:30635358
Analysis of the Bacterial and Host Proteins along and across the Porcine Gastrointestinal Tract. PMID:30634649
ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2. PMID:30629181
Mass Spectrometry-Based Comprehensive Analysis of Pancreatic Cyst Fluids. PMID:30627566
CoExpresso: assess the quantitative behavior of protein complexes in human cells. PMID:30626316
Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Large-Scale Phosphoproteomics with the Production of over 11,000 Phosphopeptides from the Colon Carcinoma HCT116 Cell Line. PMID:30624053
IQGAP-related protein IqgC suppresses Ras signaling during large-scale endocytosis. PMID:30622175
Optimization Workflow for the Analysis of Cross-Linked Peptides Using a Quadrupole Time-of-Flight Mass Spectrometer. PMID:30620560
Protein Profiling of Arabidopsis Roots Treated With Humic Substances: Insights Into the Metabolic and Interactome Networks. PMID:30619394
Differential Protein Expression During Growth on Medium Versus Long-Chain Alkanes in the Obligate Marine Hydrocarbon-Degrading Bacterium Thalassolituus oleivorans MIL-1. PMID:30619200
Unbiased Proteomic Approach Identifies Unique and Coincidental Plasma Biomarkers in Repetitive mTBI and AD Pathogenesis. PMID:30618712
Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach. PMID:30616502
Proteomic characterization of Aspergillus fumigatus isolated from air and surfaces of the International Space Station. PMID:30611835
Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome. PMID:30611210
Quantitative Proteomics of Potato Leaves Infected with Phytophthora infestans Provides Insights into Coordinated and Altered Protein Expression during Early and Late Disease Stages. PMID:30609684
Triplet-pore structure of a highly divergent TOM complex of hydrogenosomes in Trichomonas vaginalis. PMID:30608924
Quantitative Proteomic Analysis of Small and Large Extracellular Vesicles (EVs) Reveals Enrichment of Adhesion Proteins in Small EVs. PMID:30608700
Mitochondrial ribosomal protein PTCD3 mutations cause oxidative phosphorylation defects with Leigh syndrome. PMID:30607703
Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS). PMID:30607034
Changes in Synaptic Proteins Precede Neurodegeneration Markers in Preclinical Alzheimer's Disease Cerebrospinal Fluid. PMID:30606734
A chemical biology toolbox to study protein methyltransferases and epigenetic signaling. PMID:30604761
The mTORC1/4E-BP1 axis represents a critical signaling node during fibrogenesis. PMID:30602778
TCO, a Putative Transcriptional Regulator in Arabidopsis, Is a Target of the Protein Kinase CK2. PMID:30597831
Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring. PMID:30595434
Proteomic analysis discovers the differential expression of novel proteins and phosphoproteins in meningioma including NEK9, HK2 and SET and deregulation of RNA metabolism. PMID:30594554
Proteomics and multivariate modelling reveal sex-specific alterations in distinct regions of human carotid atheroma. PMID:30594242
Arabidopsis thaliana responds to colonisation of Piriformospora indica by secretion of symbiosis-specific proteins. PMID:30589877
Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. PMID:30585382
Identification of Hybrid Insulin Peptides (HIPs) in Mouse and Human Islets by Mass Spectrometry. PMID:30585061
Increased Mitochondrial Protein Levels and Bioenergetics in the Musculus Rectus Femoris of Wfs1-Deficient Mice. PMID:30584460
The ER membrane protein complex promotes biogenesis of sterol-related enzymes maintaining cholesterol homeostasis. PMID:30578317
Smell of Infection: A Novel, Noninvasive Method for Detection of Fish Excretory-Secretory Proteins. PMID:30576144
Xylem Sap Proteomics Reveals Distinct Differences Between R Gene- and Endophyte-Mediated Resistance Against Fusarium Wilt Disease in Tomato. PMID:30564219
Comparative Proteomic Analysis Reveals Elevated Capacity for Photosynthesis in Polyphenol Oxidase Expression-Silenced Clematis terniflora DC. Leaves. PMID:30563128
Laboratory strains of Bacillus anthracis exhibit pervasive alteration in expression of proteins related to sporulation under laboratory conditions relative to genetically related wild strains. PMID:30557394
Absolute Quantification of Grapevine Red Blotch Virus in Grapevine Leaf and Petiole Tissues by Proteomics. PMID:30555495
Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in Chlamydomonas reinhardtii. PMID:30546371
Associating H2O2-and NO-related changes in the proteome of Mycobacterium smegmatis with enhanced survival in macrophage. PMID:30546046
Proteogenomic Analysis of Burkholderia Species Strains 25 and 46 Isolated from Uraniferous Soils Reveals Multiple Mechanisms to Cope with Uranium Stress. PMID:30545132
Global Proteomic Profiling of Salmonella Infection by a Giant Phage. PMID:30541839
Galectin-8 Favors the Presentation of Surface-Tethered Antigens by Stabilizing the B Cell Immune Synapse. PMID:30540943
Coordinated regulation of transcription by CcpA and the Staphylococcus aureus two-component system HptRS. PMID:30540769
Time-resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis. PMID:30536871
Small Extracellular Vesicles in Rat Serum Contain Astrocyte-Derived Protein Biomarkers of Repetitive Stress. PMID:30535257
Intelligence Algorithms for Protein Classification by Mass Spectrometry. PMID:30534555
A Primer on Data Analytics in Functional Genomics: How to Move from Data to Insight? PMID:30522862
A novel lncRNA, TCONS_00006195, represses hepatocellular carcinoma progression by inhibiting enzymatic activity of ENO1. PMID:30518748
Stable-protein Pair Analysis as A Novel Strategy to Identify Proteomic Signatures: Application To Seminal Plasma From Infertile Patients. PMID:30518674
In Vitro and In Vivo Proteomic Comparison of Human Neural Progenitor Cell-Induced Photoreceptor Survival. PMID:30515959
Protein O-fucosyltransferase 2-mediated O-glycosylation of the adhesin MIC2 is dispensable for Toxoplasma gondii tachyzoite infection. PMID:30514763
Structural basis for activation of plasma-membrane Ca2+-ATPase by calmodulin. PMID:30511020
Proteomic Analysis of Plasmodesmata From Populus Cell Suspension Cultures in Relation With Callose Biosynthesis. PMID:30510561
Olfactory cleft proteome does not reflect olfactory performance in patients with idiopathic and postinfectious olfactory disorder: A pilot study. PMID:30510230
An Alliance of Gel-Based and Gel-Free Proteomic Techniques Displays Substantial Insight Into the Proteome of a Virulent and an Attenuated Histomonas meleagridis Strain. PMID:30505807
A High-throughput Bead-based Affinity Assay Enables Analysis of Genital Protein Signatures in Women At Risk of HIV Infection. PMID:30504243
The human allicin-proteome: S-thioallylation of proteins by the garlic defence substance allicin and its biological effects. PMID:30500420
Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under Stress. PMID:30489083
Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli. PMID:30487660
Trophoblast organoids as a model for maternal-fetal interactions during human placentation. PMID:30487605
Mapping the Proteome of the Synaptic Cleft through Proximity Labeling Reveals New Cleft Proteins. PMID:30487426
Microtubule-Based Control of Motor-Clutch System Mechanics in Glioma Cell Migration. PMID:30485822
Identification of proteins responding to pathogen-infection in the red alga Pyropia yezoensis using iTRAQ quantitative proteomics. PMID:30482156
MIR sequences recruit zinc finger protein ZNF768 to expressed genes. PMID:30476274
Interactome and Proteome Dynamics Uncover Immune Modulatory Associations of the Pathogen Sensing Factor cGAS. PMID:30471916
Differences in plasma fibrin clot composition in patients with thrombotic antiphospholipid syndrome compared with venous thromboembolism. PMID:30470809
Distinct editing functions of natural HLA-DM allotypes impact antigen presentation and CD4+ T cell activation. PMID:30467419
In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins. PMID:30467398
Proteome Investigation of Rat Lungs subjected to Ex Vivo Perfusion (EVLP). PMID:30467300
Specialisation events of fungal metacommunities exposed to a persistent organic pollutant are suggestive of augmented pathogenic potential. PMID:30466483
Recruitment of Cytosolic J-Proteins by TOM Receptors Promotes Mitochondrial Protein Biogenesis. PMID:30463002
Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO). PMID:30459171
Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish. PMID:30457989
Transformation-induced stress at telomeres is counteracted through changes in the telomeric proteome including SAMHD1. PMID:30456372
Proteomics and C9orf72 neuropathology identify ribosomes as poly-GR/PR interactors driving toxicity. PMID:30456350
A proteomic dataset of secreted proteins by three Staphylococcus saprophyticus strains. PMID:30456272
Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer. PMID:30454645
Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature. PMID:30450092
Endothelial cell rearrangements during vascular patterning require PI3-kinase-mediated inhibition of actomyosin contractility. PMID:30446640
Food Perception Primes Hepatic ER Homeostasis via Melanocortin-Dependent Control of mTOR Activation. PMID:30445039
The development of a new parameter for tracking post-transcriptional regulation allows the detailed map of the Pseudomonas aeruginosa Crc regulon. PMID:30429516
REX1 is the critical target of RNF12 in imprinted X chromosome inactivation in mice. PMID:30420655
Importance of Pyruvate Sensing and Transport for the Resuscitation of Viable but Nonculturable Escherichia coli K-12. PMID:30420452
Trypanosomes can initiate nuclear export co-transcriptionally. PMID:30418648
Quantification of Calcyclin and Heat Shock Protein 90 in Sera from Women with and without Preeclampsia by Mass Spectrometry. PMID:30417587
HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome. PMID:30410026
Proteomic Profiling of Burkholderia thailandensis During Host Infection Using Bio-Orthogonal Noncanonical Amino Acid Tagging (BONCAT). PMID:30406044
Dynamic proteomic changes in soft wheat seeds during accelerated ageing. PMID:30405971
Comparative Glycomics of Immunoglobulin A and G From Saliva and Plasma Reveals Biomarker Potential. PMID:30405629
Surface Exposure and Packing of Lipoproteins into Outer Membrane Vesicles Are Coupled Processes in Bacteroides. PMID:30404931
Single Amino Acid Variant Discovery in Small Numbers of Cells. PMID:30404448
Proteome-wide Analysis of Protein Thermal Stability in the Model Higher Plant Arabidopsis thaliana. PMID:30401684
The PRIDE database and related tools and resources in 2019: improving support for quantification data. PMID:30395289
The European Nucleotide Archive in 2018. PMID:30395270
Activated hepatic stellate cells promote epithelial-to-mesenchymal transition in hepatocellular carcinoma through transglutaminase 2-induced pseudohypoxia. PMID:30393774
NuRD-interacting protein ZFP296 regulates genome-wide NuRD localization and differentiation of mouse embryonic stem cells. PMID:30389936
Combined multivariate analysis and machine learning reveals a predictive module of metabolic stress response in Arabidopsis thaliana. PMID:30387490
A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile. PMID:30386308
Online Parallel Accumulation-Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer. PMID:30385480
Aspartyl Protease 5 Matures Dense Granule Proteins That Reside at the Host-Parasite Interface in Toxoplasma gondii. PMID:30377279
HCN Regulates Cellular Processes through Posttranslational Modification of Proteins by S-cyanylation. PMID:30377236
Acid bone lysate activates TGFβ signalling in human oral fibroblasts. PMID:30375456
Ribosome profiles and riboproteomes of healthy and Potato virus A- and Agrobacterium-infected Nicotiana benthamiana plants. PMID:30375150
Extraction and biomolecular analysis of dermal interstitial fluid collected with hollow microneedles. PMID:30374463
FlashPack: Fast and Simple Preparation of Ultrahigh-performance Capillary Columns for LC-MS. PMID:30373789
Characterisation of infection associated microRNA and protein cargo in extracellular vesicles of Theileria annulata infected leukocytes. PMID:30370674
FMRP recruitment of β-catenin to the translation pre-initiation complex represses translation. PMID:30361391
Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers. PMID:30359574
Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress. PMID:30359441
ArrayExpress update - from bulk to single-cell expression data. PMID:30357387
Slc7a5 regulates Kv1.2 channels and modifies functional outcomes of epilepsy-linked channel mutations. PMID:30356053
Clostridial Butyrate Biosynthesis Enzymes Are Significantly Depleted in the Gut Microbiota of Nonobese Diabetic Mice. PMID:30355671
LRP1 (Low-Density Lipoprotein Receptor-Related Protein 1) Regulates Smooth Muscle Contractility by Modulating Ca2+ Signaling and Expression of Cytoskeleton-Related Proteins. PMID:30354243
Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture. PMID:30352994
Quantitative Proteomics of the 2016 WHO Neisseria gonorrhoeae Reference Strains Surveys Vaccine Candidates and Antimicrobial Resistance Determinants. PMID:30352803
SNAREs SYP121 and SYP122 Mediate the Secretion of Distinct Cargo Subsets. PMID:30348815
Revealing the cellular degradome by mass spectrometry analysis of proteasome-cleaved peptides. PMID:30346940
Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin. PMID:30342519
Whole Proteome Profiling of N-Myristoyltransferase Activity and Inhibition Using Sortase A. PMID:30341083
Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection. PMID:30340407
Identification of Potential Plasma Biomarkers for Abdominal Aortic Aneurysm Using Tandem Mass Tag Quantitative Proteomics. PMID:30340394
Comparative Hippocampal Synaptic Proteomes of Rodents and Primates: Differences in Neuroplasticity-Related Proteins. PMID:30333727
S-palmitoylation Is Required for the Control of Growth Cone Morphology of DRG Neurons by CNP-Induced cGMP Signaling. PMID:30319353
Disrupted alternative splicing for genes implicated in splicing and ciliogenesis causes PRPF31 retinitis pigmentosa. PMID:30315276
Candidate Treponema pallidum biomarkers uncovered in urine from individuals with syphilis using mass spectrometry. PMID:30311792
Dishevelled enables casein kinase 1-mediated phosphorylation of Frizzled 6 required for cell membrane localization. PMID:30309985
Insight into the sulfur metabolism of Desulfurella amilsii by differential proteomics. PMID:30307104
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes. PMID:30299502
C16-ceramide is a natural regulatory ligand of p53 in cellular stress response. PMID:30297838
PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana. PMID:30297453
The jPOST environment: an integrated proteomics data repository and database. PMID:30295851
In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides. PMID:30293428
Antiepileptic drug carbamazepine promotes horizontal transfer of plasmid-borne multi-antibiotic resistance genes within and across bacterial genera. PMID:30291330
Quantitative Proteomics Identification of Seminal Fluid Proteins in Male Drosophila melanogaster. PMID:30287546
High-throughput proteomic profiling of the fish liver following bacterial infection. PMID:30285610
Filter-Aided Sample Preparation Procedure for Mass Spectrometric Analysis of Plant Histones. PMID:30283482
Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota. PMID:30283130
The evolutionary conserved FOXJ1 target gene Fam183b is essential for motile cilia in Xenopus but dispensable for ciliary function in mice. PMID:30279523
Quantitative phosphoproteomic analysis identifies novel functional pathways of tumor suppressor DLC1 in estrogen receptor positive breast cancer. PMID:30278072
Nonsense-mediated mRNA decay involves two distinct Upf1-bound complexes. PMID:30275269
New insights into the cellular temporal response to proteostatic stress. PMID:30272558
Expanding the Use of Spectral Libraries in Proteomics. PMID:30270626
A mitochondrial proteome profile indicative of type 2 diabetes mellitus in skeletal muscles. PMID:30266947
Robust determination of differential abundance in shotgun proteomics using nonparametric statistics. PMID:30259924
iProX: an integrated proteome resource. PMID:30252093
Microscopic and Proteomic Analysis of Dissected Developing Barley Endosperm Layers Reveals the Starchy Endosperm as Prominent Storage Tissue for ER-Derived Hordeins Alongside the Accumulation of Barley Protein Disulfide Isomerase (HvPDIL1-1). PMID:30250475
Proteomic analysis identifies highly expressed plasma membrane proteins for detection and therapeutic targeting of specific breast cancer subtypes. PMID:30250408
Feasibility of a plasma bioassay to assess oxidative protection of low-density lipoproteins by high-density lipoproteins. PMID:30244943
Differential Roles of the Thylakoid Lumenal Deg Protease Homologs in Chloroplast Proteostasis. PMID:30237207
Targeted Analysis of Lysosomal Directed Proteins and Their Sites of Mannose-6-phosphate Modification. PMID:30237200
Global Profiling of Lysine Acetylation in Borrelia burgdorferi B31 Reveals Its Role in Central Metabolism. PMID:30233522
Nidogen-1 is a novel extracellular ligand for the NKp44 activating receptor. PMID:30228939
Differential Proteome Analysis of Human Neuroblastoma Xenograft Primary Tumors and Matched Spontaneous Distant Metastases. PMID:30228356
Proteome analysis reveals a role of rainbow trout lymphoid organs during Yersinia ruckeri infection process. PMID:30228307
Partial enzymatic reactions: A missed opportunity in proteomics research. PMID:30221418
An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis. PMID:30220458
Structural determinants of Rab11 activation by the guanine nucleotide exchange factor SH3BP5. PMID:30217979
Proteomics reveals signal peptide features determining the client specificity in human TRAP-dependent ER protein import. PMID:30217974
Functional Proteomics and Deep Network Interrogation Reveal a Complex Mechanism of Action of Midostaurin in Lung Cancer Cells. PMID:30217950
In vivo cross-linking supports a head-to-tail mechanism for regulation of the plant plasma membrane P-type H+-ATPase. PMID:30217814
Data for Tandem Mass Tag (TMT) proteomic analysis of the pancreas during the early phase of experimental pancreatitis. PMID:30211274
Nanowell-mediated two-dimensional liquid chromatography enables deep proteome profiling of <1000 mammalian cells. PMID:30210768
Label-Free Proteomic Approach to Characterize Protease-Dependent and -Independent Effects of sarA Inactivation on the Staphylococcus aureus Exoproteome. PMID:30209945
A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds. PMID:30208024
Phosphoproteomic-based kinase profiling early in influenza virus infection identifies GRK2 as antiviral drug target. PMID:30206219
Knockout of the Hmt1p Arginine Methyltransferase in Saccharomyces cerevisiae Leads to the Dysregulation of Phosphate-associated Genes and Processes. PMID:30206180
"Two hits - one stone"; increased efficacy of cisplatin-based therapies by targeting PCNA's role in both DNA repair and cellular signaling. PMID:30197755
Human Dystrophin Structural Changes upon Binding to Anionic Membrane Lipids. PMID:30197181
Proteomics (SWATH-MS) informed by transcriptomics approach of tropical herb Persicaria minor leaves upon methyl jasmonate elicitation. PMID:30186693
Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production. PMID:30186274
Oocyte-specific maternal Slbp2 is required for replication-dependent histone storage and early nuclear cleavage in zebrafish oogenesis and embryogenesis. PMID:30185624
Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing. PMID:30184435
The Protein Coded by a Short Open Reading Frame, Not by the Annotated Coding Sequence, Is the Main Gene Product of the Dual-Coding Gene MIEF1. PMID:30181344
Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic Propionibacterium freudenreichii CIRM-BIA 129. PMID:30174657
Proteome Profiling of Primary Pancreatic Ductal Adenocarcinomas Undergoing Additive Chemoradiation Link ALDH1A1 to Early Local Recurrence and Chemoradiation Resistance. PMID:30172883
Evaluation of sample preparation methods for mass spectrometry-based proteomic analysis of barley leaves. PMID:30159003
In vivo phosphoproteomics reveals kinase activity profiles that predict treatment outcome in triple-negative breast cancer. PMID:30158526
Proteomic Analysis of the Function of a Novel Cold-Regulated Multispanning Transmembrane Protein COR413-PM1 in Arabidopsis. PMID:30158496
The NAD+ Salvage Pathway Supports PHGDH-Driven Serine Biosynthesis. PMID:30157431
The Phytophthora infestans Haustorium Is a Site for Secretion of Diverse Classes of Infection-Associated Proteins. PMID:30154258
Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth. PMID:30153513
Quantitative Proteomics for Xenopus Embryos II, Data Analysis. PMID:30151768
Argentilactone Molecular Targets in Paracoccidioides brasiliensis Identified by Chemoproteomics. PMID:30150478
The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates. PMID:30143613
Determining Allele-Specific Protein Expression (ASPE) Using a Novel Quantitative Concatamer Based Proteomics Method. PMID:30141943
Global phosphoproteomic analysis identifies SRMS-regulated secondary signaling intermediates. PMID:30140170
STAT3 associates with vacuolar H+-ATPase and regulates cytosolic and lysosomal pH. PMID:30127373
TMEM41B is a novel regulator of autophagy and lipid mobilization. PMID:30126924
p62-Dependent Phase Separation of Patient-Derived KEAP1 Mutations and NRF2. PMID:30126895
SPOP promotes transcriptional expression of DNA repair and replication factors to prevent replication stress and genomic instability. PMID:30124983
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides. PMID:30116038
An Integrated, High-Throughput Strategy for Multiomic Systems Level Analysis. PMID:30114907
Proteomic Analysis of Urine from California Sea Lions ( Zalophus californianus): A Resource for Urinary Biomarker Discovery. PMID:30113852
Characterization of a L-Gulono-1,4-Lactone Oxidase Like Protein in the Floral Nectar of Mucuna sempervirens, Fabaceae. PMID:30105046
Microscale Reversed-Phase Liquid Chromatography/Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Deep and Highly Sensitive Bottom-Up Proteomics: Identification of 7500 Proteins with Five Micrograms of an MCF7 Proteome Digest. PMID:30102516
Protein encoded in human telomerase RNA is involved in cell protective pathways. PMID:30102362
An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae. PMID:30101693
Repetitive somatic embryogenesis induced cytological and proteomic changes in embryogenic lines of Pseudotsuga menziesii [Mirb.]. PMID:30097018
Proteome Profiles of Head Kidney and Spleen of Rainbow Trout (Oncorhynchus Mykiss). PMID:30094954
Bordetella pertussis and Bordetella bronchiseptica filamentous hemagglutinins are processed at different sites. PMID:30087831
Proteomic distinction of renal oncocytomas and chromophobe renal cell carcinomas. PMID:30087584
A tissue-based draft map of the murine MHC class I immunopeptidome. PMID:30084848
Temporal Proteomic Analysis of Pancreatic β-Cells in Response to Lipotoxicity and Glucolipotoxicity. PMID:30082485
A Novel Iron Transporter SPD_1590 in Streptococcus pneumoniae Contributing to Bacterial Virulence Properties. PMID:30079056
A secretome profile indicative of oleate-induced proliferation of HepG2 hepatocellular carcinoma cells. PMID:30076294
Glycomic Profiling Highlights Increased Fucosylation in Pseudomyxoma Peritonei. PMID:30072579
Metabolic oscillations on the circadian time scale in Drosophila cells lacking clock genes. PMID:30072421
Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging. PMID:30068331
An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches. PMID:30067761
GM-CSF driven myeloid cells in adipose tissue link weight gain and insulin resistance via formation of 2-aminoadipate. PMID:30065264
FBP17 and CIP4 recruit SHIP2 and lamellipodin to prime the plasma membrane for fast endophilin-mediated endocytosis. PMID:30061681
Recapitulation of Human Neural Microenvironment Signatures in iPSC-Derived NPC 3D Differentiation. PMID:30057262
Deoxynivalenol induces structural alterations in epidermoid carcinoma cells A431 and impairs the response to biomechanical stimulation. PMID:30054545
Dose- and time-dependent effects of triethylene glycol dimethacrylate on the proteome of human THP-1 monocytes. PMID:30051916
Glutamate receptor δ2 serum antibodies in pediatric opsoclonus myoclonus ataxia syndrome. PMID:30045961
SWATH-MS based quantitative proteomics analysis reveals that curcumin alters the metabolic enzyme profile of CML cells by affecting the activity of miR-22/IPO7/HIF-1α axis. PMID:30045750
Comparative proteomics of the two T. brucei PABPs suggests that PABP2 controls bulk mRNA. PMID:30040867
The type VI secretion system deploys antifungal effectors against microbial competitors. PMID:30038307
Abnormal RNA stability in amyotrophic lateral sclerosis. PMID:30030424
Proteomic Investigation of the Binding Agent between Liver Glycogen β Particles. PMID:30023874
p38-mediated phosphorylation at T367 induces EZH2 cytoplasmic localization to promote breast cancer metastasis. PMID:30022044
Chemical Proteomic Analysis of Serine Hydrolase Activity in Niemann-Pick Type C Mouse Brain. PMID:30018533
The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals. PMID:30017480
Exploring bioactive peptides from bacterial secretomes using PepSAVI-MS: identification and characterization of Bac-21 from Enterococcus faecalis pPD1. PMID:30014612
Obesity-induced protein carbonylation in murine adipose tissue regulates the DNA-binding domain of nuclear zinc finger proteins. PMID:30012885
Sex-Dependent Variation of Pumpkin (Cucurbita maxima cv. Big Max) Nectar and Nectaries as Determined by Proteomics and Metabolomics. PMID:30008725
Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome. PMID:30008298
The Impact of Oncogenic EGFRvIII on the Proteome of Extracellular Vesicles Released from Glioblastoma Cells. PMID:30006486
A Cobalamin Activity-Based Probe Enables Microbial Cell Growth and Finds New Cobalamin-Protein Interactions across Domains. PMID:30006406
Integrated Analysis of Quantitative Proteome and Transcriptional Profiles Reveals the Dynamic Function of Maternally Expressed Proteins After Parthenogenetic Activation of Buffalo Oocyte. PMID:30002204
Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis. PMID:30002203
Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells. PMID:30001349
IKK promotes cytokine-induced and cancer-associated AMPK activity and attenuates phenformin-induced cell death in LKB1-deficient cells. PMID:29991651
Comparison of Nuclear Matrix and Mitotic Chromosome Scaffold Proteins in Drosophila S2 Cells-Transmission of Hallmarks of Nuclear Organization Through Mitosis. PMID:29991507
Suppressor of IKKepsilon forms direct interactions with cytoskeletal proteins, tubulin and α-actinin, linking innate immunity to the cytoskeleton. PMID:29988566
Characterization of Plasmodium vivax Proteins in Plasma-Derived Exosomes From Malaria-Infected Liver-Chimeric Humanized Mice. PMID:29988527
In-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix. PMID:29983641
Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering. PMID:29983374
Evolutionary trade-offs associated with loss of PmrB function in host-adapted Pseudomonas aeruginosa. PMID:29980663
Influenza A Virus Induces Autophagosomal Targeting of Ribosomal Proteins. PMID:29980615
Antennal Protein Profile in Honeybees: Caste and Task Matter More Than Age. PMID:29973886
Multifunctional Activity-Based Protein Profiling of the Developing Lung. PMID:29972024
A System-wide Approach to Monitor Responses to Synergistic BRAF and EGFR Inhibition in Colorectal Cancer Cells. PMID:29970458
Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria. PMID:29967381
Chloroplast Acetyltransferase NSI Is Required for State Transitions in Arabidopsis thaliana. PMID:29967049
Microbial Community Structure-Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities. PMID:29963029
Patients with early-stage oropharyngeal cancer can be identified with label-free serum proteomics. PMID:29961760
Endogenous Cell Type-Specific Disrupted in Schizophrenia 1 Interactomes Reveal Protein Networks Associated With Neurodevelopmental Disorders. PMID:29961565
Proteomic Analysis of Hippocampus in a Mouse Model of Depression Reveals Neuroprotective Function of Ubiquitin C-terminal Hydrolase L1 (UCH-L1) via Stress-induced Cysteine Oxidative Modifications. PMID:29959188
Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm. PMID:29951075
Dissecting ribosomal particles throughout the kingdoms of life using advanced hybrid mass spectrometry methods. PMID:29950687
Rab18 is not necessary for lipid droplet biogenesis or turnover in human mammary carcinoma cells. PMID:29949452
Revealing the immune perturbation of black phosphorus nanomaterials to macrophages by understanding the protein corona. PMID:29946125
Quantifying and Localizing the Mitochondrial Proteome Across Five Tissues in A Mouse Population. PMID:29945935
Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets. PMID:29941660
Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms. PMID:29939309
Inner ear exosomes and their potential use as biomarkers. PMID:29933376
Quantitative Crotonylome Analysis Expands the Roles of p300 in the Regulation of Lysine Crotonylation Pathway. PMID:29932303
A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds. PMID:29930335
Surfactant and Chaotropic Agent Assisted Sequential Extraction/On-Pellet Digestion (SCAD) for Enhanced Proteomics. PMID:29923408
Induction by Bradyrhizobium diazoefficiens of Different Pathways for Growth in D-mannitol or L-arabinose Leading to Pronounced Differences in CO2 Fixation, O2 Consumption, and Lateral-Flagellum Production. PMID:29922265
Proteomic Analysis of Zika Virus Infected Primary Human Fetal Neural Progenitors Suggests a Role for Doublecortin in the Pathological Consequences of Infection in the Cortex. PMID:29922247
Nuclear PTEN safeguards pre-mRNA splicing to link Golgi apparatus for its tumor suppressive role. PMID:29921876
Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion. PMID:29915569
MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides. PMID:29915279
Proteomics Reveals Scope of Mycolactone-mediated Sec61 Blockade and Distinctive Stress Signature. PMID:29915147
Proteome Response of a Metabolically Flexible Anoxygenic Phototroph to Fe(II) Oxidation. PMID:29915106
Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases. PMID:29914080
Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica. PMID:29910077
Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis. PMID:29907817
Integrative Analysis of Proteome and Ubiquitylome Reveals Unique Features of Lysosomal and Endocytic Pathways in Gefitinib-Resistant Non-Small Cell Lung Cancer Cells. PMID:29901268
Separable roles for Mec1/ATR in genome maintenance, DNA replication, and checkpoint signaling. PMID:29899143
α-synuclein oligomers interact with ATP synthase and open the permeability transition pore in Parkinson's disease. PMID:29895861
Suppression of detyrosinated microtubules improves cardiomyocyte function in human heart failure. PMID:29892068
Coupling Secretomics with Enzyme Activities To Compare the Temporal Processes of Wood Metabolism among White and Brown Rot Fungi. PMID:29884760
TCA precipitation and ethanol/HCl single-step purification evaluation: One-dimensional gel electrophoresis, bradford assays, spectrofluorometry and Raman spectroscopy data on HSA, Rnase, lysozyme - Mascots and Skyline data. PMID:29876449
Proteomic analysis of pitcher fluid from Nepenthes × ventrata. PMID:29876422
Control of seed dormancy and germination by DOG1-AHG1 PP2C phosphatase complex via binding to heme. PMID:29875377
Choice of costimulatory domains and of cytokines determines CAR T-cell activity in neuroblastoma. PMID:29872565
Mesenchymal stem cells enhance tumorigenic properties of human glioblastoma through independent cell-cell communication mechanisms. PMID:29872504
The prion protein is embedded in a molecular environment that modulates transforming growth factor β and integrin signaling. PMID:29872131
Lgl reduces endosomal vesicle acidification and Notch signaling by promoting the interaction between Vap33 and the V-ATPase complex. PMID:29871910
Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria. PMID:29867847
Changed Expression of Cytoskeleton Proteins During Lung Injury in a Mouse Model of Streptococcus pneumoniae Infection. PMID:29867838
Proteomic and Bioinformatic Studies for the Characterization of Response to Pemetrexed in Platinum Drug Resistant Ovarian Cancer. PMID:29867465
CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time Prediction. PMID:29863353
Base-excision repair deficiency alone or combined with increased oxidative stress does not increase mtDNA point mutations in mice. PMID:29860357
Identification of MOSPD2, a novel scaffold for endoplasmic reticulum membrane contact sites. PMID:29858488
Urinary Proteome Analysis Identified Neprilysin and VCAM as Proteins Involved in Diabetic Nephropathy. PMID:29854824
Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics. PMID:29850960
Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats. PMID:29849169
ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides. PMID:29848782
Extended investigation of tube-gel sample preparation: a versatile and simple choice for high throughput quantitative proteomics. PMID:29844437
Biochemical Characterization of Isoniazid-resistant Mycobacterium tuberculosis: Can the Analysis of Clonal Strains Reveal Novel Targetable Pathways? PMID:29844232
Molecular Composition of Vestibular Hair Bundles. PMID:29844221
Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore. PMID:29809148
The β3-integrin endothelial adhesome regulates microtubule-dependent cell migration. PMID:29794156
Nup133 Is Required for Proper Nuclear Pore Basket Assembly and Dynamics in Embryonic Stem Cells. PMID:29791854
LRRK2 is a negative regulator of Mycobacterium tuberculosis phagosome maturation in macrophages. PMID:29789389
Adipose tissue proteomic analyses to study puberty in Brahman heifers. PMID:29788311
Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas. PMID:29788257
Immunopeptidomic Profiling of HLA-A2-Positive Triple Negative Breast Cancer Identifies Potential Immunotherapy Target Antigens. PMID:29786170
PAF1 complex interactions with SETDB1 mediate promoter H3K9 methylation and transcriptional repression of Hoxa9 and Meis1 in acute myeloid leukemia. PMID:29774127
GSTM3 and GSTP1: novel players driving tumor progression in cervical cancer. PMID:29774096
Ablation of Sirtuin5 in the postnatal mouse heart results in protein succinylation and normal survival in response to chronic pressure overload. PMID:29769314
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. PMID:29760453
Differentially abundant proteins associated with heterosis in the primary roots of popcorn. PMID:29758068
Quantitative Tandem Affinity Purification, an Effective Tool to Investigate Protein Complex Composition in Plant Hormone Signaling: Strigolactones in the Spotlight. PMID:29755490
The Transcription Factor Hif-1 Enhances the Radio-Resistance of Mouse MSCs. PMID:29755367
Additional oxidative stress reroutes the global response of Aspergillus fumigatus to iron depletion. PMID:29747589
IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts. PMID:29743190
LC-MS/MS characterization of xyloside-primed glycosaminoglycans with cytotoxic properties reveals structural diversity and novel glycan modifications. PMID:29739851
Metabolic Reprogramming of Vibrio cholerae Impaired in Respiratory NADH Oxidation Is Accompanied by Increased Copper Sensitivity. PMID:29735761
A novel USP9X substrate TTK contributes to tumorigenesis in non-small-cell lung cancer. PMID:29721084
Proteomic alterations in early stage cervical cancer. PMID:29719595
Click Chemistry-mediated Biotinylation Reveals a Function for the Protease BACE1 in Modulating the Neuronal Surface Glycoproteome. PMID:29716987
Nucleolar-nucleoplasmic shuttling of TARG1 and its control by DNA damage-induced poly-ADP-ribosylation and by nucleolar transcription. PMID:29712969
Enhancement of red blood cell transfusion compatibility using CRISPR-mediated erythroblast gene editing. PMID:29700043
New perspectives: systems medicine in cardiovascular disease. PMID:29699591
Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys. PMID:29696004
SILAC-based phosphoproteomics reveals new PP2A-Cdc55-regulated processes in budding yeast. PMID:29688323
The exon-intron gene structure upstream of the initiation codon predicts translation efficiency. PMID:29684192
The response to neoadjuvant chemoradiotherapy with 5-fluorouracil in locally advanced rectal cancer patients: a predictive proteomic signature. PMID:29681787
Proteome-wide analysis of cysteine oxidation reveals metabolic sensitivity to redox stress. PMID:29679077
FSPP: A Tool for Genome-Wide Prediction of smORF-Encoded Peptides and Their Functions. PMID:29675032
Clostridium sordellii outer spore proteins maintain spore structural integrity and promote bacterial clearance from the gastrointestinal tract. PMID:29668758
Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58. PMID:29666759
Integrated Transcriptomic and Proteomic Analyses Suggest the Participation of Endogenous Protease Inhibitors in the Regulation of Protease Gene Expression in Helicoverpa armigera. PMID:29661852
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. PMID:29657133
Optimizing Recombinant Protein Production in the Escherichia coli Periplasm Alleviates Stress. PMID:29654183
Proteomic profiling of human cancer pseudopodia for the identification of anti-metastatic drug candidates. PMID:29643415
A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation. PMID:29641209
Identification of potential urine proteins and microRNA biomarkers for the diagnosis of pulmonary tuberculosis patients. PMID:29636444
Cross-talk between monocyte invasion and astrocyte proliferation regulates scarring in brain injury. PMID:29632244
The Use of CRISPR/Cas9 Gene Editing to Confirm Congenic Contaminations in Host-Pathogen Interaction Studies. PMID:29616197
The impact of circulating preeclampsia-associated extracellular vesicles on the migratory activity and phenotype of THP-1 monocytic cells. PMID:29615814
CRISPR/Cas9-mediated Genomic Editing of Cluap1/IFT38 Reveals a New Role in Actin Arrangement. PMID:29615496
Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra. PMID:29615495
Proline hydroxylation in collagen supports integrin binding by two distinct mechanisms. PMID:29615493
Lipid accumulation in human breast cancer cells injured by iron depletors. PMID:29615075
Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover. PMID:29610302
Targeted Proteomics Guided by Label-free Quantitative Proteome Analysis in Saliva Reveal Transition Signatures from Health to Periodontal Disease. PMID:29610270
Comparison of protein expression between human livers and the hepatic cell lines HepG2, Hep3B, and Huh7 using SWATH and MRM-HR proteomics: Focusing on drug-metabolizing enzymes. PMID:29610054
Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics. PMID:29608554
iTRAQ-based quantitative proteomic analysis reveals the lateral meristem developmental mechanism for branched spike development in tetraploid wheat (Triticum turgidum L.). PMID:29606089
Involvement of serum-derived exosomes of elderly patients with bone loss in failure of bone remodeling via alteration of exosomal bone-related proteins. PMID:29603567
Extracellular Vesicle Subtypes Released From Activated or Apoptotic T-Lymphocytes Carry a Specific and Stimulus-Dependent Protein Cargo. PMID:29599781
Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients. PMID:29596458
Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability. PMID:29576527
Characterization of the adult Aedes aegypti early midgut peritrophic matrix proteome using LC-MS. PMID:29570734
Quantitative mass spectrometry analysis reveals a panel of nine proteins as diagnostic markers for colon adenocarcinomas. PMID:29568375
Early Cold-Induced Peroxidases and Aquaporins Are Associated With High Cold Tolerance in Dajiao (Musa spp. 'Dajiao'). PMID:29568304
Multiple mechanisms drive phage infection efficiency in nearly identical hosts. PMID:29568113
Proteomic characterization of fresh spermatozoa and supernatant after cryopreservation in relation to freezability of carp (Cyprinus carpio L) semen. PMID:29565997
Mapping in vivo target interaction profiles of covalent inhibitors using chemical proteomics with label-free quantification. PMID:29565900
Angiogenic and Immunologic Proteins Identified by Deep Proteomic Profiling of Human Retinal and Choroidal Vascular Endothelial Cells: Potential Targets for New Biologic Drugs. PMID:29559410
Multiplex Fluorescent, Activity-Based Protein Profiling Identifies Active α-Glycosidases and Other Hydrolases in Plants. PMID:29555787
Rb interactome data and its modulations during cell cycle progression in HEK 293 cells. PMID:29552609
Integrated analysis of fine-needle-aspiration cystic fluid proteome, cancer cell secretome, and public transcriptome datasets for papillary thyroid cancer biomarker discovery. PMID:29552294
Identification of Novel Physiological Substrates of Mycobacterium bovis BCG Protein Kinase G (PknG) by Label-free Quantitative Phosphoproteomics. PMID:29549130
CDK and MAPK Synergistically Regulate Signaling Dynamics via a Shared Multi-site Phosphorylation Region on the Scaffold Protein Ste5. PMID:29547722
Comparison of secretome from osteoblasts derived from sclerotic versus non-sclerotic subchondral bone in OA: A pilot study. PMID:29547667
Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases. PMID:29541007
Benchmarking common quantification strategies for large-scale phosphoproteomics. PMID:29535314
NuRD and CAF-1-mediated silencing of the D4Z4 array is modulated by DUX4-induced MBD3L proteins. PMID:29533181
Protein composition of catalytically active U7-dependent processing complexes assembled on histone pre-mRNA containing biotin and a photo-cleavable linker. PMID:29529248
Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization. PMID:29527141
Proteomic characterization of high-density lipoprotein particles in patients with non-alcoholic fatty liver disease. PMID:29527140
Protease Activities Triggered by Ralstonia solanacearum Infection in Susceptible and Tolerant Tomato Lines. PMID:29523767
MARCH6 and TRC8 facilitate the quality control of cytosolic and tail-anchored proteins. PMID:29519897
Interactome Analysis Reveals Regulator of G Protein Signaling 14 (RGS14) is a Novel Calcium/Calmodulin (Ca2+/CaM) and CaM Kinase II (CaMKII) Binding Partner. PMID:29518331
Three unrelated protease inhibitors enhance accumulation of pharmaceutical recombinant proteins in Nicotiana benthamiana. PMID:29509983
Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells. PMID:29509190
Proteomics of Aspergillus fumigatus Conidia-containing Phagolysosomes Identifies Processes Governing Immune Evasion. PMID:29507050
SWATH mass spectrometry as a tool for quantitative profiling of the matrisome. PMID:29501709
STRENDA DB: enabling the validation and sharing of enzyme kinetics data. PMID:29498804
Proteomic Analysis of Kiwifruit in Response to the Postharvest Pathogen, Botrytis cinerea. PMID:29497428
The use of SWATH to analyse the dynamic changes of bacterial proteome of carbapanemase-producing Escherichia coli under antibiotic pressure. PMID:29497067
Phosphoproteomics Analysis Identifies Novel Candidate Substrates of the Nonreceptor Tyrosine Kinase, Src-related Kinase Lacking C-terminal Regulatory Tyrosine and N-terminal Myristoylation Sites (SRMS). PMID:29496907
Comprehensive Redox Profiling of the Thiol Proteome of Clostridium difficile. PMID:29496906
Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein. PMID:29494634
T-Cell Immunopeptidomes Reveal Cell Subtype Surface Markers Derived From Intracellular Proteins. PMID:29493099
Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells. PMID:29491378
CD74 regulates complexity of tumor cell HLA class II peptidome in brain metastasis and is a positive prognostic marker for patient survival. PMID:29490700
PHLDA1 Mediates Drug Resistance in Receptor Tyrosine Kinase-Driven Cancer. PMID:29490281
The N-terminal domain of a tick evasin is critical for chemokine binding and neutralization and confers specific binding activity to other evasins. PMID:29487134
Two predominant MUPs, OBP3 and MUP13, are male pheromones in rats. PMID:29483934
Disentangling thermal stress responses in a reef-calcifier and its photosymbionts by shotgun proteomics. PMID:29476118
Strong cation exchange-reversed phase liquid chromatography-capillary zone electrophoresis-tandem mass spectrometry platform with high peak capacity for deep bottom-up proteomics. PMID:29475469
The MYO6 interactome reveals adaptor complexes coordinating early endosome and cytoskeletal dynamics. PMID:29467281
Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases. PMID:29466423
Phenazines Regulate Nap-Dependent Denitrification in Pseudomonas aeruginosa Biofilms. PMID:29463605
Proteotranscriptomic Measurements of E6-Associated Protein (E6AP) Targets in DU145 Prostate Cancer Cells. PMID:29463595
Structural and compositional diversity of fibrillin microfibrils in human tissues. PMID:29453284
Establishment of Dimethyl Labeling-based Quantitative Acetylproteomics in Arabidopsis. PMID:29440448
Pilot Study on Mass Spectrometry-Based Analysis of the Proteome of CD34⁺CD123⁺ Progenitor Cells for the Identification of Potential Targets for Immunotherapy in Acute Myeloid Leukemia. PMID:29439554
Human Cervical Mucus Plugs Exhibit Insufficiencies in Antimicrobial Activity Towards Group B Streptococcus. PMID:29425317
Dynamics of venom composition across a complex life cycle. PMID:29424690
Systems Signatures Reveal Unique Remission-path of Type 2 Diabetes Following Roux-en-Y Gastric Bypass Surgery. PMID:29422288
Selective Photoaffinity Probe That Enables Assessment of Cannabinoid CB2 Receptor Expression and Ligand Engagement in Human Cells. PMID:29420021
Asparagine bioavailability governs metastasis in a model of breast cancer. PMID:29414946
Peptide Level Turnover Measurements Enable the Study of Proteoform Dynamics. PMID:29414762
Fungal Secretome Analysis via PepSAVI-MS: Identification of the Bioactive Peptide KP4 from Ustilago maydis. PMID:29404970
BioID Reveals Novel Proteins of the Plasmodium Parasitophorous Vacuole Membrane. PMID:29404413
Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance. PMID:29402381
The rolB plant oncogene affects multiple signaling protein modules related to hormone signaling and plant defense. PMID:29396465
Large-scale intact glycopeptide identification by Mascot database search. PMID:29391424
Integrated multi-omic analysis of host-microbiota interactions in acute oak decline. PMID:29378627
Development of a Photo-Cross-Linkable Diaminoquinazoline Inhibitor for Target Identification in Plasmodium falciparum. PMID:29377668
The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators. PMID:29376036
Quantitative Proteomic Analysis of Four Developmental Stages of Saprolegnia parasitica. PMID:29375523
Identification of a Golgi GPI-N-acetylgalactosamine transferase with tandem transmembrane regions in the catalytic domain. PMID:29374258
Tissue-specific changes in apoplastic proteins and cell wall structure during cold acclimation of winter wheat crowns. PMID:29373702
Protein Tyrosine Phosphatase Receptor Type G (PTPRG) Controls Fibroblast Growth Factor Receptor (FGFR) 1 Activity and Influences Sensitivity to FGFR Kinase Inhibitors. PMID:29371290
N-glycome of the Lysosomal Glycocalyx is Altered in Niemann-Pick Type C Disease (NPC) Model Cells. PMID:29367433
Homeolog expression analysis in an allotriploid non-model crop via integration of transcriptomics and proteomics. PMID:29358676
Temporal Effects of Combined Birinapant and Paclitaxel on Pancreatic Cancer Cells Investigated via Large-Scale, Ion-Current-Based Quantitative Proteomics (IonStar). PMID:29358341
Quantitative Proteomics After Spinal Cord Injury (SCI) in a Regenerative and a Nonregenerative Stage in the Frog Xenopus laevis. PMID:29358338
Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance. PMID:29358085
Proteomic Dissection of Nanotopography-Sensitive Mechanotransductive Signaling Hubs that Foster Neuronal Differentiation in PC12 Cells. PMID:29354032
Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag). PMID:29351928
The RIG-I-like receptor LGP2 inhibits Dicer-dependent processing of long double-stranded RNA and blocks RNA interference in mammalian cells. PMID:29351913
The Role of Cadaverine Synthesis on Pneumococcal Capsule and Protein Expression. PMID:29351189
T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression. PMID:29350274
The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways. PMID:29339722
Mapping protein interactions of sodium channel NaV1.7 using epitope-tagged gene-targeted mice. PMID:29335280
Proteome-Wide Characterization of Phosphorylation-Induced Conformational Changes in Breast Cancer. PMID:29332387
Systematic quantitative analysis of H2A and H2B variants by targeted proteomics. PMID:29329550
Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons. PMID:29328915
Combinatorial Omics Analysis Reveals Perturbed Lysosomal Homeostasis in Collagen VII-deficient Keratinocytes. PMID:29326176
Splicing of platelet resident pre-mRNAs upon activation by physiological stimuli results in functionally relevant proteome modifications. PMID:29323256
Omics Assisted N-terminal Proteoform and Protein Expression Profiling On Methionine Aminopeptidase 1 (MetAP1) Deletion. PMID:29317475
Linking FOXO3, NCOA3, and TCF7L2 to Ras pathway phenotypes through a genome-wide forward genetic screen in human colorectal cancer cells. PMID:29301589
Characterizing the O-glycosylation landscape of human plasma, platelets, and endothelial cells. PMID:29296958
Advanced aging causes diaphragm functional abnormalities, global proteome remodeling, and loss of mitochondrial cysteine redox flexibility in mice. PMID:29289553
Exploring the molecular complexity of Triatoma dimidiata sialome. PMID:29288089
Intake of Fish Oil Specifically Modulates Colonic Muc2 Expression in Middle-Aged Rats by Suppressing the Glycosylation Process. PMID:29277971
Bifidobacteria or Fiber Protects against Diet-Induced Microbiota-Mediated Colonic Mucus Deterioration. PMID:29276171
Identification of a precursor processing protease from the spider Cupiennius salei essential for venom neurotoxin maturation. PMID:29269415
Multi-Omic Biogeography of the Gastrointestinal Microbiota of a Pre-Weaned Lamb. PMID:29258228
Biotinylation by antibody recognition-a method for proximity labeling. PMID:29256494
On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry. PMID:29256016
RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities. PMID:29255150
Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium". PMID:29247059
Proteome profiling of clear cell renal cell carcinoma in von Hippel-Lindau patients highlights upregulation of Xaa-Pro aminopeptidase-1, an anti-proliferative and anti-migratory exoprotease. PMID:29245961
In-depth PtdIns(3,4,5)P3 signalosome analysis identifies DAPP1 as a negative regulator of GPVI-driven platelet function. PMID:29242851
CHIP Regulates Aquaporin-2 Quality Control and Body Water Homeostasis. PMID:29242247
Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds. PMID:29235492
Proteomic analyses identify ARH3 as a serine mono-ADP-ribosylhydrolase. PMID:29234005
Temporal Proteomics of Inducible RNAi Lines of Clp Protease Subunits Identifies Putative Protease Substrates. PMID:29229697
Systems Pharmacology Dissection of Cholesterol Regulation Reveals Determinants of Large Pharmacodynamic Variability between Cell Lines. PMID:29226804
ELMOD1 Stimulates ARF6-GTP Hydrolysis to Stabilize Apical Structures in Developing Vestibular Hair Cells. PMID:29222402
The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for coexisting respiratory supercomplexes. PMID:29222160
Lipopolysaccharide Upregulates Palmitoylated Enzymes of the Phosphatidylinositol Cycle: An Insight from Proteomic Studies. PMID:29217618
Proteomics and antivenomics of Echis carinatus carinatus venom: Correlation with pharmacological properties and pathophysiology of envenomation. PMID:29215036
Rhizobium Impacts on Seed Productivity, Quality, and Protection of Pisum sativum upon Disease Stress Caused by Didymella pinodes: Phenotypic, Proteomic, and Metabolomic Traits. PMID:29204150
Selected reaction monitoring approach for validating peptide biomarkers. PMID:29203663
Multiplex quantitative SILAC for analysis of archaeal proteomes: a case study of oxidative stress responses. PMID:29194950
Landscape of the regulatory elements for lysine 2-hydroxyisobutyrylation pathway. PMID:29192674
Unbiased Quantitative Proteomics Reveals a Crucial Role of the Allergen Context for the Activation of Human Dendritic Cells. PMID:29192156
MS Western, a Method of Multiplexed Absolute Protein Quantification is a Practical Alternative to Western Blotting. PMID:29192002
Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells. PMID:29191787
Proteomic analysis of lung metastases in a murine breast cancer model reveals divergent influence of CTSB and CTSL overexpression. PMID:29187882
Nbeal2 interacts with Dock7, Sec16a, and Vac14. PMID:29187380
A multiregional proteomic survey of the postnatal human brain. PMID:29184206
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community. PMID:29184101
Proteomics of phosphorylation and protein dynamics during fertilization and meiotic exit in the Xenopus egg. PMID:29183978
Spectral Library Based Analysis of Arginine Phosphorylations in Staphylococcus aureus. PMID:29183913
N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway. PMID:29168982
MAPKs Influence Pollen Tube Growth by Controlling the Formation of Phosphatidylinositol 4,5-Bisphosphate in an Apical Plasma Membrane Domain. PMID:29167320
Identification and Validation of a Salivary Protein Panel to Detect Heart Failure Early. PMID:29158831
Assessing species biomass contributions in microbial communities via metaproteomics. PMID:29146960
Characterization of Detergent Insoluble Proteome in Chronic Traumatic Encephalopathy. PMID:29145658
Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio). PMID:29145436
Epstein-Barr Virus Protein EB2 Stimulates Translation Initiation of mRNAs through Direct Interactions with both Poly(A)-Binding Protein and Eukaryotic Initiation Factor 4G. PMID:29142127
The Ndc80 complex targets Bod1 to human mitotic kinetochores. PMID:29142109
A Proteomic Approach to Investigate the Drought Response in the Orphan Crop Eragrostis tef. PMID:29140297
Differential Content of Proteins, mRNAs, and miRNAs Suggests that MDSC and Their Exosomes May Mediate Distinct Immune Suppressive Functions. PMID:29139296
The Small Heat Shock Protein α-Crystallin B Shows Neuroprotective Properties in a Glaucoma Animal Model. PMID:29135941
Comparative Analyses of Data Independent Acquisition Mass Spectrometric Approaches: DIA, WiSIM-DIA, and Untargeted DIA. PMID:29134766
The food-borne pathogen Campylobacter jejuni responds to the bile salt deoxycholate with countermeasures to reactive oxygen species. PMID:29133896
Spatially-Resolved Top-down Proteomics Bridged to MALDI MS Imaging Reveals the Molecular Physiome of Brain Regions. PMID:29122912
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. PMID:29117863
Proteomic profiling of TGFBI-null mouse corneas reveals only minor changes in matrix composition supportive of TGFBI knockdown as therapy against TGFBI-linked corneal dystrophies. PMID:29117645
Improved Prediction of Bovine Leucocyte Antigens (BoLA) Presented Ligands by Use of Mass-Spectrometry-Determined Ligand and in Vitro Binding Data. PMID:29115832
Vanillin Promotes the Germination of Antrodia camphorata Arthroconidia through PKA and MAPK Signaling Pathways. PMID:29109709
ProteomicsDB. PMID:29106664
Pharmacoproteomic characterisation of human colon and rectal cancer. PMID:29101300
INA complex liaises the F1Fo-ATP synthase membrane motor modules. PMID:29093463
The immunopeptidomic landscape of ovarian carcinomas. PMID:29093164
RNA sequencing and proteomics approaches reveal novel deficits in the cortex of Mecp2-deficient mice, a model for Rett syndrome. PMID:29090078
A compendium of multi-omic sequence information from the Saanich Inlet water column. PMID:29087368
Integrated Proteomic and Transcriptomic Analysis Reveals Long Noncoding RNA HOX Transcript Antisense Intergenic RNA (HOTAIR) Promotes Hepatocellular Carcinoma Cell Proliferation by Regulating Opioid Growth Factor Receptor (OGFr). PMID:29079719
Increased serotransferrin and ceruloplasmin turnover in diet-controlled patients with type 2 diabetes. PMID:29079528
Dietary changes in nutritional studies shape the structural and functional composition of the pigs' fecal microbiome-from days to weeks. PMID:29078812
Affinity proteomics reveals extensive phosphorylation of the Brassica chromosome axis protein ASY1 and a network of associated proteins at prophase I of meiosis. PMID:29078019
Remodeling of the Streptococcus mutans proteome in response to LrgAB and external stresses. PMID:29070798
Bivalent complexes of PRC1 with orthologs of BRD4 and MOZ/MORF target developmental genes in Drosophila. PMID:29070704
Optimization of Experimental Parameters in Data-Independent Mass Spectrometry Significantly Increases Depth and Reproducibility of Results. PMID:29070702
The BioStudies database-one stop shop for all data supporting a life sciences study. PMID:29069414
Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in Pseudomonas aeruginosa Biofilms. PMID:29066549
Single-Shot Top-Down Proteomics with Capillary Zone Electrophoresis-Electrospray Ionization-Tandem Mass Spectrometry for Identification of Nearly 600 Escherichia coli Proteoforms. PMID:29064224
Gel-based and gel-free proteome data associated with controlled deterioration treatment of Glycine max seeds. PMID:29062869
A short linear motif in scaffold Nup145C connects Y-complex with pre-assembled outer ring Nup82 complex. PMID:29062044
PKM2 methylation by CARM1 activates aerobic glycolysis to promote tumorigenesis. PMID:29058718
The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoire. PMID:29055088
Comprehensive profiling of lysine ubiquitome reveals diverse functions of lysine ubiquitination in common wheat. PMID:29051560
Complement Activation in Peritoneal Dialysis-Induced Arteriolopathy. PMID:29046343
The online Tabloid Proteome: an annotated database of protein associations. PMID:29040688
Analyzing the Complex Regulatory Landscape of Hfq - an Integrative, Multi-Omics Approach. PMID:29033902
RBPJ/CBF1 interacts with L3MBTL3/MBT1 to promote repression of Notch signaling via histone demethylase KDM1A/LSD1. PMID:29030483
Proteomic landscape of the primary somatosensory cortex upon sensory deprivation. PMID:29020746
Systematic Identification of Mycobacterium tuberculosis Effectors Reveals that BfrB Suppresses Innate Immunity. PMID:29018126
Phosphoproteomics Reveals Regulatory T Cell-Mediated DEF6 Dephosphorylation That Affects Cytokine Expression in Human Conventional T Cells. PMID:28993769
Temporal expression profiling of plasma proteins reveals oxidative stress in early stages of Type 1 Diabetes progression. PMID:28993202
Persulfidation proteome reveals the regulation of protein function by hydrogen sulfide in diverse biological processes in Arabidopsis. PMID:28992305
The SysteMHC Atlas project. PMID:28985418
MSP22.8 is a protease inhibitor-like protein involved in shell mineralization in the edible mussel Mytilus galloprovincialis. PMID:28979842
Selective aggregation of the splicing factor Hsh155 suppresses splicing upon genotoxic stress. PMID:28978642
Calcineurin-mediated Dephosphorylation of Acetyl-coA Carboxylase is Required for Pheromone Biosynthesis Activating Neuropeptide (PBAN)-induced Sex Pheromone Biosynthesis in Helicoverpa armigera. PMID:28978618
Modulation of proteostasis counteracts oxidative stress and affects DNA base excision repair capacity in ATM-deficient cells. PMID:28973444
MAZ induces MYB expression during the exit from quiescence via the E2F site in the MYB promoter. PMID:28973440
Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation. PMID:28973437
Enhanced Missing Proteins Detection in NCI60 Cell Lines Using an Integrative Search Engine Approach. PMID:28960077
Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling. PMID:28959251
Converging Small Ubiquitin-like Modifier (SUMO) and Ubiquitin Signaling: Improved Methodology Identifies Co-modified Target Proteins. PMID:28951443
Ubiquilin1 promotes antigen-receptor mediated proliferation by eliminating mislocalized mitochondrial proteins. PMID:28933694
Phosphoproteome-based kinase activity profiling reveals the critical role of MAP2K2 and PLK1 in neuronal autophagy. PMID:28933595
Global Proteomics Revealed Klebsiella pneumoniae Induced Autophagy and Oxidative Stress in Caenorhabditis elegans by Inhibiting PI3K/AKT/mTOR Pathway during Infection. PMID:28932706
Global proteomic profiling of Yersinia ruckeri strains. PMID:28931430
The autophagy initiator ULK1 sensitizes AMPK to allosteric drugs. PMID:28924239
Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection. PMID:28924191
Nε- and O-Acetylation in Mycobacterium tuberculosis Lineage 7 and Lineage 4 Strains: Proteins Involved in Bioenergetics, Virulence, and Antimicrobial Resistance Are Acetylated. PMID:28920697
A Linear Diubiquitin-Based Probe for Efficient and Selective Detection of the Deubiquitinating Enzyme OTULIN. PMID:28919039
RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia. PMID:28914261
A druggable secretory protein maturase of Toxoplasma essential for invasion and egress. PMID:28898199
Lysine acetylation stoichiometry and proteomics analyses reveal pathways regulated by sirtuin 1 in human cells. PMID:28893905
Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. PMID:28887381
Estrogenic regulation of skeletal muscle proteome: a study of premenopausal women and postmenopausal MZ cotwins discordant for hormonal therapy. PMID:28884514
A Structural and Functional Elucidation of the Rumen Microbiome Influenced by Various Diets and Microenvironments. PMID:28883813
Quantitative proteomics of Sf21 cells during Baculovirus infection reveals progressive host proteome changes and its regulation by viral miRNA. PMID:28883418
Proline-dependent and basophilic kinases phosphorylate human TRPC6 at serine 14 to control channel activity through increased membrane expression. PMID:28877958
Proteome Analysis of Hypoxic Glioblastoma Cells Reveals Sequential Metabolic Adaptation of One-Carbon Metabolic Pathways. PMID:28874504
Transcriptome analysis of the response of Burmese python to digestion. PMID:28873961
The genomic landscape of human cellular circadian variation points to a novel role for the signalosome. PMID:28869038
IgSF21 promotes differentiation of inhibitory synapses via binding to neurexin2α. PMID:28864826
Topological N-glycosylation and site-specific N-glycan sulfation of influenza proteins in the highly expressed H1N1 candidate vaccines. PMID:28860626
The bacterial arginine glycosyltransferase effector NleB preferentially modifies Fas-associated death domain protein (FADD). PMID:28860194
New Genes and Functional Innovation in Mammals. PMID:28854603
Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague. PMID:28854255
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
A heterochromatin-dependent transcription machinery drives piRNA expression. PMID:28847004
Quantitative phosphoproteomic analysis of acquired cancer drug resistance to pazopanib and dasatinib. PMID:28842319
Quantitative proteomic characterization of lung-MSC and bone marrow-MSC using DIA-mass spectrometry. PMID:28839187
Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica. PMID:28837661
Pervasive coexpression of spatially proximal genes is buffered at the protein level. PMID:28835372
Time-course global proteome analyses reveal an inverse correlation between Aβ burden and immunoglobulin M levels in the APPNL-F mouse model of Alzheimer disease. PMID:28832675
Cardiac Metabolic Deregulation Induced by the Tyrosine Kinase Receptor Inhibitor Sunitinib is rescued by Endothelin Receptor Antagonism. PMID:28824714
Proteomic Response of Pseudomonas aeruginosa PAO1 Adhering to Solid Surfaces. PMID:28824592
A Simple Light Isotope Metabolic Labeling (SLIM-labeling) Strategy: A Powerful Tool to Address the Dynamics of Proteome Variations In Vivo. PMID:28821603
A Microsomal Proteomics View of H₂O₂- and ABA-Dependent Responses. PMID:28820483
Landscape of submitochondrial protein distribution. PMID:28819139
Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival. PMID:28811595
iTRAQ and virus-induced gene silencing revealed three proteins involved in cold response in bread wheat. PMID:28790462
Direct Identification of Functional Amyloid Proteins by Label-Free Quantitative Mass Spectrometry. PMID:28777328
Dynamic Acclimation to High Light in Arabidopsis thaliana Involves Widespread Reengineering of the Leaf Proteome. PMID:28775726
UBE2O remodels the proteome during terminal erythroid differentiation. PMID:28774900
Quantitative Temporal in Vivo Proteomics Deciphers the Transition of Virus-Driven Myeloid Cells into M2 Macrophages. PMID:28768414
Quantitative Proteomics of Cerebrospinal Fluid in Paediatric Pneumococcal Meningitis. PMID:28765563
Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify. PMID:28747380
Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress. PMID:28746874
MEIS homeodomain proteins facilitate PARP1/ARTD1-mediated eviction of histone H1. PMID:28739678
Structural insights into transcription initiation by yeast RNA polymerase I. PMID:28739580
Proteomic profiling of early degenerative retina of RCS rats. PMID:28730077
The nuclear proteome of Trypanosoma brucei. PMID:28727848
N-Degradomic Analysis Reveals a Proteolytic Network Processing the Podocyte Cytoskeleton. PMID:28724775
A community proposal to integrate proteomics activities in ELIXIR. PMID:28713550
Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome. PMID:28713344
Synaptic Interactome Mining Reveals p140Cap as a New Hub for PSD Proteins Involved in Psychiatric and Neurological Disorders. PMID:28713243
The ciliary membrane-associated proteome reveals actin-binding proteins as key components of cilia. PMID:28710093
Potential and active functions in the gut microbiota of a healthy human cohort. PMID:28709472
Synaptic GAP and GEF Complexes Cluster Proteins Essential for GTP Signaling. PMID:28706196
A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax. PMID:28706005
Feedback Microtubule Control and Microtubule-Actin Cross-talk in Arabidopsis Revealed by Integrative Proteomic and Cell Biology Analysis of KATANIN 1 Mutants. PMID:28706004
Combination of Metabolomic and Proteomic Analysis Revealed Different Features among Lactobacillus delbrueckii Subspecies bulgaricus and lactis Strains While In Vivo Testing in the Model Organism Caenorhabditis elegans Highlighted Probiotic Properties. PMID:28702021
Integrated analysis of zone-specific protein and metabolite profiles within nitrogen-fixing Medicago truncatula-Sinorhizobium medicae nodules. PMID:28700717
Reduced Protein Expression in a Virus Attenuated by Codon Deoptimization. PMID:28698233
Spatiotemporal Proteomic Profiling of Human Cerebral Development. PMID:28687556
Metaproteomics reveals functional differences in intestinal microbiota development of preterm infants. PMID:28684633
Proteomic profiling of archaeological human bone. PMID:28680659
HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma. PMID:28680592
Sec61 blockade by mycolactone inhibits antigen cross-presentation independently of endosome-to-cytosol export. PMID:28679634
Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. PMID:28675934
Targeted Feature Detection for Data-Dependent Shotgun Proteomics. PMID:28673088
Mechanism Investigation of Rifampicin-Induced Liver Injury Using Comparative Toxicoproteomics in Mice. PMID:28671602
Translating Divergent Environmental Stresses into a Common Proteome Response through the Histidine Kinase 33 (Hik33) in a Model Cyanobacterium. PMID:28668777
Autologous chondrocyte implantation-derived synovial fluids display distinct responder and non-responder proteomic profiles. PMID:28666451
METTL21B Is a Novel Human Lysine Methyltransferase of Translation Elongation Factor 1A: Discovery by CRISPR/Cas9 Knockout. PMID:28663172
Comparative genetic, proteomic and phosphoproteomic analysis of C. elegans embryos with a focus on ham-1/STOX and pig-1/MELK in dopaminergic neuron development. PMID:28659600
Definition of a High-Confidence Mitochondrial Proteome at Quantitative Scale. PMID:28658629
β-catenin downregulates Dicer to promote ovarian cancer metastasis. PMID:28650464
Structural and regulatory diversity shape HLA-C protein expression levels. PMID:28649982
A PLC-γ1 Feedback Pathway Regulates Lck Substrate Phosphorylation at the T-Cell Receptor and SLP-76 Complex. PMID:28644030
Insufficient antibody validation challenges oestrogen receptor beta research. PMID:28643774
Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a. PMID:28634367
Oral squamous cell carcinoma patients can be differentiated from healthy individuals with label-free serum proteomics. PMID:28632724
TCTE1 is a conserved component of the dynein regulatory complex and is required for motility and metabolism in mouse spermatozoa. PMID:28630322
Combined Mass Spectrometry Imaging and Top-down Microproteomics Reveals Evidence of a Hidden Proteome in Ovarian Cancer. PMID:28629911
Proteomic Analysis of Lipid Droplets from Arabidopsis Aging Leaves Brings New Insight into Their Biogenesis and Functions. PMID:28611809
CMG2/ANTXR2 regulates extracellular collagen VI which accumulates in hyaline fibromatosis syndrome. PMID:28604699
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. PMID:28604659
Variation in auxin sensing guides AUX/IAA transcriptional repressor ubiquitylation and destruction. PMID:28589936
Immune signatures of pathogenesis in the peritoneal compartment during early infection of sheep with Fasciola hepatica. PMID:28584245
Proteomic composition and immunomodulatory properties of urinary bladder matrix scaffolds in homeostasis and injury. PMID:28583764
Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus. PMID:28582408
Ndfip1 restricts mTORC1 signalling and glycolysis in regulatory T cells to prevent autoinflammatory disease. PMID:28580955
Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens. PMID:28578384
Proteome-wide Identification of Glycosylation-dependent Interactors of Galectin-1 and Galectin-3 on Mesenchymal Retinal Pigment Epithelial (RPE) Cells. PMID:28576849
A Class of Environmental and Endogenous Toxins Induces BRCA2 Haploinsufficiency and Genome Instability. PMID:28575672
Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication. PMID:28575236
Comparative proteomic profiling of the serum differentiates pancreatic cancer from chronic pancreatitis. PMID:28573829
WIPI3 and WIPI4 β-propellers are scaffolds for LKB1-AMPK-TSC signalling circuits in the control of autophagy. PMID:28561066
Bypass of Activation Loop Phosphorylation by Aspartate 836 in Activation of the Endoribonuclease Activity of Ire1. PMID:28559428
A parts list for fungal cellulosomes revealed by comparative genomics. PMID:28555641
A systematic genomic screen implicates nucleocytoplasmic transport and membrane growth in nuclear size control. PMID:28545058
Proteomic analysis of the phycobiliprotein antenna of the cryptophyte alga Guillardia theta cultured under different light intensities. PMID:28540588
Quantitative Phospho-proteomic Analysis of TNFα/NFκB Signaling Reveals a Role for RIPK1 Phosphorylation in Suppressing Necrotic Cell Death. PMID:28539327
Systematic Evaluation of Protein Reduction and Alkylation Reveals Massive Unspecific Side Effects by Iodine-containing Reagents. PMID:28539326
Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition. PMID:28537268
A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M. PMID:28535754
Matrix Mechanosensing: From Scaling Concepts in 'Omics Data to Mechanisms in the Nucleus, Regeneration, and Cancer. PMID:28532215
In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level. PMID:28516784
A Temporal Proteomic Map of Epstein-Barr Virus Lytic Replication in B Cells. PMID:28514666
Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae. PMID:28512450
Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2. PMID:28512129
ZBTB48 is both a vertebrate telomere-binding protein and a transcriptional activator. PMID:28500257
Large scale phosphoprotein profiling to explore Drosophila cold acclimation regulatory mechanisms. PMID:28490779
A microRNA-129-5p/Rbfox crosstalk coordinates homeostatic downscaling of excitatory synapses. PMID:28487411
Activation of the Amino Acid Response Pathway Blunts the Effects of Cardiac Stress. PMID:28487390
Charting organellar importomes by quantitative mass spectrometry. PMID:28485388
Expression proteomics study to determine metallodrug targets and optimal drug combinations. PMID:28484215
Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co-Occurring Protein Pairs. PMID:28480704
Mass spectrometry data from label-free quantitative proteomic analysis of harmless and pathogenic strains of infectious microalgae, Prototheca spp. PMID:28480323
Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells. PMID:28467828
A systematic approach for peptide characterization of B-cell receptor in chronic lymphocytic leukemia cells. PMID:28467808
Quantitative cardiac phosphoproteomics profiling during ischemia-reperfusion in an immature swine model. PMID:28455290
Validation, Identification, and Biological Consequences of the Site-specific O-GlcNAcylation Dynamics of Carbohydrate-responsive Element-binding Protein (ChREBP). PMID:28450420
N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana. PMID:28432195
Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesis. PMID:28431522
Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots. PMID:28419154
Quantitative analyses of the global proteome and phosphoproteome reveal the different impacts of propofol and dexmedetomidine on HT22 cells. PMID:28418008
Galectin-1 inhibition attenuates profibrotic signaling in hypoxia-induced pulmonary fibrosis. PMID:28417017
The Glial Cell-Derived Neurotrophic Factor (GDNF)-responsive Phosphoprotein Landscape Identifies Raptor Phosphorylation Required for Spermatogonial Progenitor Cell Proliferation. PMID:28408662
Global analysis of glycoproteins identifies markers of endotoxin tolerant monocytes and GPR84 as a modulator of TNFα expression. PMID:28404994
Dynamics of the Interaction between Cotton Bollworm Helicoverpa armigera and Nucleopolyhedrovirus as Revealed by Integrated Transcriptomic and Proteomic Analyses. PMID:28404795
Cytosine modifications modulate the chromatin architecture of transcriptional enhancers. PMID:28396520
Determining the bacterial cell biology of Planctomycetes. PMID:28393831
Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea. PMID:28392779
An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells. PMID:28388416
Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods. PMID:28388405
Protein interaction networks at the host-microbe interface in Diaphorina citri, the insect vector of the citrus greening pathogen. PMID:28386418
Intravitreal injection of β-crystallin B2 improves retinal ganglion cell survival in an experimental animal model of glaucoma. PMID:28384305
Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation. PMID:28382234
Proteogenomic Analysis Greatly Expands the Identification of Proteins Related to Reproduction in the Apogamous Fern Dryopteris affinis ssp. affinis. PMID:28382042
Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus. PMID:28382018
Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition. PMID:28381614
Vertex-Specific Proteins pUL17 and pUL25 Mechanically Reinforce Herpes Simplex Virus Capsids. PMID:28381566
Meioc maintains an extended meiotic prophase I in mice. PMID:28380054
Real-time iTRAQ-based proteome profiling revealed the central metabolism involved in nitrogen starvation induced lipid accumulation in microalgae. PMID:28378827
A Proteomic Approach to Identify Alterations in the Small Ubiquitin-like Modifier (SUMO) Network during Controlled Mechanical Ventilation in Rat Diaphragm Muscle. PMID:28373296
Proteomic analysis of protein purified derivative of Mycobacterium bovis. PMID:28372590
Changes in cellular signaling proteins in extracts from A549, H460, and U2OS cells treated with cisplatin or docetaxel. PMID:28367485
Ambra1 spatially regulates Src activity and Src/FAK-mediated cancer cell invasion via trafficking networks. PMID:28362576
Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse. PMID:28352255
Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages. PMID:28350877
Proteome dynamics during postnatal mouse corpus callosum development. PMID:28349996
Proteome Profiling of Wheat Shoots from Different Cultivars. PMID:28348574
Database-independent Protein Sequencing (DiPS) Enables Full-length de Novo Protein and Antibody Sequence Determination. PMID:28348172
PTENβ is an alternatively translated isoform of PTEN that regulates rDNA transcription. PMID:28332494
Orchestrating differential data access for translational research: a pilot implementation. PMID:28330491
Draft genome of the honey bee ectoparasitic mite, Tropilaelaps mercedesae, is shaped by the parasitic life history. PMID:28327890
Comprehensive proteomic characterization of stem cell-derived extracellular matrices. PMID:28327460
Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue. PMID:28325852
Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry. PMID:28319114
Deciphering the Acute Cellular Phosphoproteome Response to Irradiation with X-rays, Protons and Carbon Ions. PMID:28302921
SPOP Mutation Drives Prostate Tumorigenesis In Vivo through Coordinate Regulation of PI3K/mTOR and AR Signaling. PMID:28292441
Glycoproteins in Claudin-Low Breast Cancer Cell Lines Have a Unique Expression Profile. PMID:28287265
Colistin Resistance in Acinetobacter baumannii MDR-ZJ06 Revealed by a Multiomics Approach. PMID:28275586
Identification of Proteins Interacting with Cytoplasmic High-Mobility Group Box 1 during the Hepatocellular Response to Ischemia Reperfusion Injury. PMID:28275217
Understanding Epstein-Barr Virus Life Cycle with Proteomics: A Temporal Analysis of Ubiquitination During Virus Reactivation. PMID:28271981
Temperature-Induced Remodeling of the Photosynthetic Machinery Tunes Photosynthesis in the Thermophilic Alga Cyanidioschyzon merolae. PMID:28270628
Mutations in mitochondrial DNA causing tubulointerstitial kidney disease. PMID:28267784
Quirks of Error Estimation in Cross-Linking/Mass Spectrometry. PMID:28267312
Human Immunoglobulin Heavy Gamma Chain Polymorphisms: Molecular Confirmation Of Proteomic Assessment. PMID:28265047
Proteomic Analysis of Post-synaptic Density Fractions from Shank3 Mutant Mice Reveals Brain Region Specific Changes Relevant to Autism Spectrum Disorder. PMID:28261056
DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs. PMID:28253837
Evolution of complexity in the zebrafish synapse proteome. PMID:28252024
Defining the Akt1 interactome data and delineating alterations in its composition as a function of cell cycle progression. PMID:28243621
Prophage WO genes recapitulate and enhance Wolbachia-induced cytoplasmic incompatibility. PMID:28241146
Proteome and Secretome Analysis Reveals Differential Post-transcriptional Regulation of Toll-like Receptor Responses. PMID:28235783
Toward an Optimized Workflow for Middle-Down Proteomics. PMID:28233997
CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor. PMID:28232751
Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress. PMID:28232487
Characterisation of urinary WFDC12 in small nocturnal basal primates, mouse lemurs (Microcebus spp.). PMID:28225021
Methylated-antibody affinity purification to improve proteomic identification of plant RNA polymerase Pol V complex and the interacting proteins. PMID:28224978
Mapping Atheroprotective Functions and Related Proteins/Lipoproteins in Size Fractionated Human Plasma. PMID:28223350
Proteomic Analysis of Mitochondria-Enriched Fraction Isolated from the Frontal Cortex and Hippocampus of Apolipoprotein E Knockout Mice Treated with Alda-1, an Activator of Mitochondrial Aldehyde Dehydrogenase (ALDH2). PMID:28218653
Proteasome Activity Profiling Uncovers Alteration of Catalytic β2 and β5 Subunits of the Stress-Induced Proteasome during Salinity Stress in Tomato Roots. PMID:28217134
The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system. PMID:28212376
The use of urinary proteomics in the assessment of suitability of mouse models for ageing. PMID:28199320
The Human Leukocyte Antigen (HLA)-B27 Peptidome in Vivo, in Spondyloarthritis-susceptible HLA-B27 Transgenic Rats and the Effect of Erap1 Deletion. PMID:28188227
Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation. PMID:28186488
Proteomic Screen for Cellular Targets of the Vaccinia Virus F10 Protein Kinase Reveals that Phosphorylation of mDia Regulates Stress Fiber Formation. PMID:28183815
Comparative Proteomics of Purified Pathogen Vacuoles Correlates Intracellular Replication of Legionella pneumophila with the Small GTPase Ras-related protein 1 (Rap1). PMID:28183814
Quantitative Map of Proteome Dynamics during Neuronal Differentiation. PMID:28178528
Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation. PMID:28178326
Phylointeractomics reconstructs functional evolution of protein binding. PMID:28176777
Effects of ErbB2 Overexpression on the Proteome and ErbB Ligand-specific Phosphosignaling in Mammary Luminal Epithelial Cells. PMID:28174229
Diversity and functions of the sheep faecal microbiota: a multi-omic characterization. PMID:28165194
Nitration of tyrosines in complement factor H domains alters its immunological activity and mediates a pathogenic role in age related macular degeneration. PMID:28159936
Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture. PMID:28135300
PP2ACdc55 Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation. PMID:28132839
Melt With This Kiss: Paralyzing and Liquefying Venom of The Assassin Bug Pristhesancus plagipennis (Hemiptera: Reduviidae). PMID:28130397
Protein abundance of AKT and ERK pathway components governs cell type-specific regulation of proliferation. PMID:28123004
A Golden Age for Working with Public Proteomics Data. PMID:28118949
Identifying components required for OMP biogenesis as novel targets for antiinfective drugs. PMID:28118090
Extensive cargo identification reveals distinct biological roles of the 12 importin pathways. PMID:28117667
Improved surfaceome coverage with a label-free nonaffinity-purified workflow. PMID:28116781
Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis. PMID:28114394
Differential signaling networks of Bcr-Abl p210 and p190 kinases in leukemia cells defined by functional proteomics. PMID:28111465
PGRMC1 Is a Novel Potential Tumor Biomarker of Human Renal Cell Carcinoma Based on Quantitative Proteomic and Integrative Biological Assessments. PMID:28107520
Comparative Phosphoproteomics Reveals an Important Role of MKK2 in Banana (Musa spp.) Cold Signal Network. PMID:28106078
A ZIP6-ZIP10 heteromer controls NCAM1 phosphorylation and integration into focal adhesion complexes during epithelial-to-mesenchymal transition. PMID:28098160
MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones. PMID:28096900
Discrete cytosolic macromolecular BRAF complexes exhibit distinct activities and composition. PMID:28093501
Norovirus-Mediated Modification of the Translational Landscape via Virus and Host-Induced Cleavage of Translation Initiation Factors. PMID:28087593
Impact of Cystinosin Glycosylation on Protein Stability by Differential Dynamic Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC). PMID:28082515
Sex differences in tendon structure and function. PMID:28071813
Global Lysine Acetylome Analysis of Desiccated Somatic Embryos of Picea asperata. PMID:28066480
Deep Phosphoproteomic Measurements Pinpointing Drug Induced Protective Mechanisms in Neuronal Cells. PMID:28066266
A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. PMID:28065597
Plasma proteome and metabolome characterization of an experimental human thyrotoxicosis model. PMID:28065164
Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis. PMID:28056027
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Mechanosensing by the nucleus: From pathways to scaling relationships. PMID:28043971
Comprehensive Metaproteomic Analyses of Urine in the Presence and Absence of Neutrophil-Associated Inflammation in the Urinary Tract. PMID:28042331
Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response. PMID:28011693
Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and Angiogenesis. PMID:28007913
Site-Specific Cleavage of Ribosomal RNA in Escherichia coli-Based Cell-Free Protein Synthesis Systems. PMID:27992588
The "PepSAVI-MS" Pipeline for Natural Product Bioactive Peptide Discovery. PMID:27991763
The Safety Limits Of An Extended Fast: Lessons from a Non-Model Organism. PMID:27991520
Architecture of the yeast Elongator complex. PMID:27974378
Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism. PMID:27965289
A Luciferase-fragment Complementation Assay to Detect Lipid Droplet-associated Protein-Protein Interactions. PMID:27956707
Novel insight into the composition of human single-stranded DNA-binding protein 1 (hSSB1)-containing protein complexes. PMID:27938330
A Strong Neutrophil Elastase Proteolytic Fingerprint Marks the Carcinoma Tumor Proteome. PMID:27927741
An Interactome-Centered Protein Discovery Approach Reveals Novel Components Involved in Mitosome Function and Homeostasis in Giardia lamblia. PMID:27926928
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. PMID:27924013
A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens. PMID:27920218
Enhanced limonene production in cyanobacteria reveals photosynthesis limitations. PMID:27911807
Quantitative and Selective Analysis of Feline Growth Related Proteins Using Parallel Reaction Monitoring High Resolution Mass Spectrometry. PMID:27907059
jPOSTrepo: an international standard data repository for proteomes. PMID:27899654
UniProt: the universal protein knowledgebase. PMID:27899622
Human Spermatozoa Quantitative Proteomic Signature Classifies Normo- and Asthenozoospermia. PMID:27895139
Membrane Complexes of Syntrophomonas wolfei Involved in Syntrophic Butyrate Degradation and Hydrogen Formation. PMID:27881975
Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences. PMID:27881428
Tapered-Tip Capillary Electrophoresis Nano-Electrospray Ionization Mass Spectrometry for Ultrasensitive Proteomics: the Mouse Cortex. PMID:27853976
Enzyme Kinetics for Complex System Enables Accurate Determination of Specificity Constants of Numerous Substrates in a Mixture by Proteomics Platform. PMID:27852747
Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. PMID:27843720
Proteomic characterization of neuromelanin granules isolated from human substantia nigra by laser-microdissection. PMID:27841354
A proteomic adaptation of small intestinal mucosa in response to dietary protein limitation. PMID:27841298
Glucose-regulated and drug-perturbed phosphoproteome reveals molecular mechanisms controlling insulin secretion. PMID:27841257
In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075. PMID:27834373
Neuronal GPCR OCTR-1 regulates innate immunity by controlling protein synthesis in Caenorhabditis elegans. PMID:27833098
A Role for Barley Calcium-Dependent Protein Kinase CPK2a in the Response to Drought. PMID:27826303
Sequence basis of Barnacle Cement Nanostructure is Defined by Proteins with Silk Homology. PMID:27824121
Proteome Remodeling in Response to Sulfur Limitation in "Candidatus Pelagibacter ubique". PMID:27822545
SCAI promotes DNA double-strand break repair in distinct chromosomal contexts. PMID:27820601
Cross-linking reveals laminin coiled-coil architecture. PMID:27815530
Integrative omics connects N-glycoproteome-wide alterations with pathways and regulatory events in induced pluripotent stem cells. PMID:27808266
Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis. PMID:27801908
KAT2A/KAT2B-targeted acetylome reveals a role for PLK4 acetylation in preventing centrosome amplification. PMID:27796307
Flexible Data Analysis Pipeline for High-Confidence Proteogenomics. PMID:27786492
Proteome and Peptidome of Vipera berus berus Venom. PMID:27775574
MZH29 is a novel potent inhibitor that overcomes drug resistance FLT3 mutations in acute myeloid leukemia. PMID:27773927
Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses. PMID:27764671
Insulin stimulated MCF7 breast cancer cells: Proteome dataset. PMID:27761513
Lsd1 Ablation Triggers Metabolic Reprogramming of Brown Adipose Tissue. PMID:27760309
Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens. PMID:27760159
Proteomic and metabolomic analyses reveal metabolic responses to 3-hydroxypropionic acid synthesized internally in cyanobacterium Synechocystis sp. PCC 6803. PMID:27757169
Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery. PMID:27749824
Thermophilic archaea activate butane via alkyl-coenzyme M formation. PMID:27749816
Immunoseroproteomic Profiling in African American Men with Prostate Cancer: Evidence for an Autoantibody Response to Glycolysis and Plasminogen-Associated Proteins. PMID:27742740
The Caveolin-3 G56S sequence variant of unknown significance: Muscle biopsy findings and functional cell biological analysis. PMID:27739254
Robust Label-free, Quantitative Profiling of Circulating Plasma Microparticle (MP) Associated Proteins. PMID:27738094
The membrane scaffold SLP2 anchors a proteolytic hub in mitochondria containing PARL and the i-AAA protease YME1L. PMID:27737933
Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly. PMID:27733515
The human-induced pluripotent stem cell initiative-data resources for cellular genetics. PMID:27733501
Monitoring Perinatal Gut Microbiota in Mouse Models by Mass Spectrometry Approaches: Parental Genetic Background and Breastfeeding Effects. PMID:27725814
circRNADb: A comprehensive database for human circular RNAs with protein-coding annotations. PMID:27725737
Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational research. PMID:27713570
Quantitative Proteomics of the SMAD (Suppressor of Mothers against Decapentaplegic) Transcription Factor Family Identifies Importin 5 as a Bone Morphogenic Protein Receptor SMAD-specific Importin. PMID:27703004
Isotope-targeted glycoproteomics (IsoTaG) analysis of sialylated N- and O-glycopeptides on an Orbitrap Fusion Tribrid using azido and alkynyl sugars. PMID:27695962
A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine. PMID:27694946
Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells. PMID:27694941
Proteomic analysis uncovers common effects of IFN-γ and IL-27 on the HLA class I antigen presentation machinery in human cancer cells. PMID:27683036
Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls. PMID:27672500
Impact of Moderate Temperature Changes on Neisseria meningitidis Adhesion Phenotypes and Proteome. PMID:27672084
The impact of sequence database choice on metaproteomic results in gut microbiota studies. PMID:27671352
Proteomic and genomic characterization of a yeast model for Ogden syndrome. PMID:27668839
Ska3 Ensures Timely Mitotic Progression by Interacting Directly With Microtubules and Ska1 Microtubule Binding Domain. PMID:27667719
Profiling of adhesive-related genes in the freshwater cnidarian Hydra magnipapillata by transcriptomics and proteomics. PMID:27661452
Antimicrobial peptide exposure selects for Staphylococcus aureus resistance to human defence peptides. PMID:27650186
Comparative Ploidy Proteomics of Candida albicans Biofilms Unraveled the Role of the AHP1 Gene in the Biofilm Persistence Against Amphotericin B. PMID:27644984
A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection. PMID:27641956
Dynamic Protein Interactions of the Polycomb Repressive Complex 2 during Differentiation of Pluripotent Cells. PMID:27634302
Quantitative Proteomic Analysis of Wheat Seeds during Artificial Ageing and Priming Using the Isobaric Tandem Mass Tag Labeling. PMID:27632285
Loss of the Greatwall Kinase Weakens the Spindle Assembly Checkpoint. PMID:27631493
Distinct biological events generated by ECM proteolysis by two homologous collagenases. PMID:27630193
Proteomics of Human Dendritic Cell Subsets Reveals Subset-Specific Surface Markers and Differential Inflammasome Function. PMID:27626665
Systems Medicine as an Emerging Tool for Cardiovascular Genetics. PMID:27626034
TDP-43 loss of function inhibits endosomal trafficking and alters trophic signaling in neurons. PMID:27621269
The Proteasome Acts as a Hub for Plant Immunity and Is Targeted by Pseudomonas Type III Effectors. PMID:27613851
Biochemical Foundations of Health and Energy Conservation in Hibernating Free-ranging Subadult Brown Bear Ursus arctos. PMID:27609515
Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution. PMID:27604873
Comprehensive Proteomic Analysis of Human Milk-derived Extracellular Vesicles Unveils a Novel Functional Proteome Distinct from Other Milk Components. PMID:27601599
Comprehensive Proteome Profiling of Platelet Identified a Protein Profile Predictive of Responses to An Antiplatelet Agent Sarpogrelate. PMID:27601597
Detection of Missing Proteins Using the PRIDE Database as a Source of Mass Spectrometry Evidence. PMID:27581094
Integrative proteomic profiling of ovarian cancer cell lines reveals precursor cell associated proteins and functional status. PMID:27561551
The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins. PMID:27560450
Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements. PMID:27556644
Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells. PMID:27554326
Proteomic analysis reveals dynamic regulation of fruit development and sugar and acid accumulation in apple. PMID:27535992
MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked. PMID:27535802
Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana. PMID:27532006
A comprehensive and scalable database search system for metaproteomics. PMID:27528457
The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic. PMID:27514026
Proteomic dataset of Paracentrotus lividus gonads of different sexes and at different maturation stages. PMID:27508229
Characterization of Outer Membrane Proteome of Akkermansia muciniphila Reveals Sets of Novel Proteins Exposed to the Human Intestine. PMID:27507967
Nucleation of DNA repair factors by FOXA1 links DNA demethylation to transcriptional pioneering. PMID:27500525
Glycoproteomic Analysis of Malignant Ovarian Cancer Ascites Fluid Identifies Unusual Glycopeptides. PMID:27500424
Quantitative analyses of the hepatic proteome of methylmercury-exposed Atlantic cod (Gadus morhua) suggest oxidative stress-mediated effects on cellular energy metabolism. PMID:27496535
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets. PMID:27493588
Drought-Induced Leaf Proteome Changes in Switchgrass Seedlings. PMID:27490537
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. PMID:27490519
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. PMID:27487407
A proteomics approach reveals molecular manipulators of distinct cellular processes in the salivary glands of Glossina m. morsitans in response to Trypanosoma b. brucei infections. PMID:27485005
Toll-like receptor 2 activation depends on lipopeptide shedding by bacterial surfactants. PMID:27470911
Characterization of Gonadotrope Secretoproteome Identifies Neurosecretory Protein VGF-derived Peptide Suppression of Follicle-stimulating Hormone Gene Expression. PMID:27466366
Fasciola hepatica Surface Tegument: Glycoproteins at the Interface of Parasite and Host. PMID:27466253
Circadian Profiling of the Arabidopsis Proteome Using 2D-DIGE. PMID:27462335
Proteomic Analysis of the Hydrogen and Carbon Monoxide Metabolism of Methanothermobacter marburgensis. PMID:27458443
Approach for Identifying Human Leukocyte Antigen (HLA)-DR Bound Peptides from Scarce Clinical Samples. PMID:27452731
Quantitative Proteomic and Transcriptomic Study on Autotetraploid Paulownia and Its Diploid Parent Reveal Key Metabolic Processes Associated with Paulownia Autotetraploidization. PMID:27446122
Static Clathrin Assemblies at the Peripheral Vacuole-Plasma Membrane Interface of the Parasitic Protozoan Giardia lamblia. PMID:27438602
Identification of Oligosaccharides in Feces of Breast-fed Infants and Their Correlation with the Gut Microbial Community. PMID:27435585
Comparative Proteomics and Functional Analysis Reveal a Role of Plasmodium falciparum Osmiophilic Bodies in Malaria Parasite Transmission. PMID:27432909
Human Leukocyte Antigen (HLA) Peptides Derived from Tumor Antigens Induced by Inhibition of DNA Methylation for Development of Drug-facilitated Immunotherapy. PMID:27412690
A standardized production pipeline for high profile targets from Mycobacterium tuberculosis. PMID:27400835
Integrated Omic Analysis of a Guinea Pig Model of Heart Failure and Sudden Cardiac Death. PMID:27399916
Antibody-independent identification of bovine milk-derived peptides in breast-milk. PMID:27396729
HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1. PMID:27384951
Embryonic lethal abnormal vision proteins and adenine and uridine-rich element mRNAs after global cerebral ischemia and reperfusion in the rat. PMID:27381823
Transcriptome- Assisted Label-Free Quantitative Proteomics Analysis Reveals Novel Insights into Piper nigrum-Phytophthora capsici Phytopathosystem. PMID:27379110
Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila. PMID:27378189
HIV-host interactome revealed directly from infected cells. PMID:27375898
Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress. PMID:27369081
A Human Lectin Microarray for Sperm Surface Glycosylation Analysis. PMID:27364157
Data from quantitative label free proteomics analysis of rat spleen. PMID:27358910
MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota. PMID:27343061
Activation of an Endoribonuclease by Non-intein Protein Splicing. PMID:27311716
Identification of Quantitative Proteomic Differences between Mycobacterium tuberculosis Lineages with Altered Virulence. PMID:27303394
The innate immune protein calprotectin promotes Pseudomonas aeruginosa and Staphylococcus aureus interaction. PMID:27301800
The CENP-T/-W complex is a binding partner of the histone chaperone FACT. PMID:27284163
Immunoproteomic identification of MbovP579, a promising diagnostic biomarker for serological detection of Mycoplasma bovis infection. PMID:27281618
Association of potential salivary biomarkers with diabetic retinopathy and its severity in type-2 diabetes mellitus: a proteomic analysis by mass spectrometry. PMID:27280065
Protein kinase A-dependent phosphorylation stimulates the transcriptional activity of hypoxia-inducible factor 1. PMID:27245613
Preferential Phosphorylation on Old Histones during Early Mitosis in Human Cells. PMID:27226594
Distinctive proteomic profiles among different regions of human carotid plaques in men and women. PMID:27198765
A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes. PMID:27197221
Venus flytrap carnivorous lifestyle builds on herbivore defense strategies. PMID:27197216
Identification of glycoproteins associated with HIV latently infected cells using quantitative glycoproteomics. PMID:27195445
Tyrosine 601 of Bacillus subtilis DnaK Undergoes Phosphorylation and Is Crucial for Chaperone Activity and Heat Shock Survival. PMID:27148221
Proteomic Insight into the Response of Arabidopsis Chloroplasts to Darkness. PMID:27137770
Proteome Profile and Quantitative Proteomic Analysis of Buffalo (Bubalusbubalis) Follicular Fluid during Follicle Development. PMID:27136540
Enhanced snoMEN Vectors Facilitate Establishment of GFP-HIF-1α Protein Replacement Human Cell Lines. PMID:27128805
The Metacaspase (Mca1p) Restricts O-glycosylation During Farnesol-induced Apoptosis in Candida albicans. PMID:27125826
Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems. PMID:27125755
Quantitative Proteome Analysis of Leishmania donovani under Spermidine Starvation. PMID:27123864
Nanonets Collect Cancer Secretome from Pericellular Space. PMID:27100780
Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes. PMID:27095734
Unconventional endosome-like compartment and retromer complex in Toxoplasma gondii govern parasite integrity and host infection. PMID:27064065
Changes over lactation in breast milk serum proteins involved in the maturation of immune and digestive system of the infant. PMID:26977438
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. PMID:26973616
Quantitative Proteomics Reveals β2 Integrin-mediated Cytoskeletal Rearrangement in Vascular Endothelial Growth Factor (VEGF)-induced Retinal Vascular Hyperpermeability. PMID:26969716
A proteome analysis of freezing tolerance in red clover (Trifolium pratense L.). PMID:26965047
Phosphorylation of plastoglobular proteins in Arabidopsis thaliana. PMID:26962209
Molecular architecture of the Dam1 complex-microtubule interaction. PMID:26962051
Open-gate mutants of the mammalian proteasome show enhanced ubiquitin-conjugate degradation. PMID:26957043
Compensating the Fitness Costs of Synonymous Mutations. PMID:26882986
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. PMID:26740669
The European Bioinformatics Institute in 2016: Data growth and integration. PMID:26673705
ProteomeXchange provides globally coordinated proteomics data submission and dissemination PubMed citations: 1280.

1280 articles citing: ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Metabolomic and proteomic profiling in bipolar disorder patients revealed potential molecular signatures related to hemostasis. PMID:35922643
Activity-based protein profiling identifies alternating activation of enzymes involved in the bifidobacterium shunt pathway or mucin degradation in the gut microbiome response to soluble dietary fiber. PMID:35858888
Accelerated lysine metabolism conveys kidney protection in salt-sensitive hypertension. PMID:35835746
Cryo-EM structures of prion protein filaments from Gerstmann-Sträussler-Scheinker disease. PMID:35819518
α-Synuclein molecular behavior and nigral proteomic profiling distinguish subtypes of Lewy body disorders. PMID:35748929
The Combined Partial Knockdown of CBS and MPST Genes Induces Inflammation, Impairs Adipocyte Function-Related Gene Expression and Disrupts Protein Persulfidation in Human Adipocytes. PMID:35739994
HSP90 and Aha1 modulate microRNA maturation through promoting the folding of Dicer1. PMID:35736213
Integrated Multilayer Omics Reveals the Genomic, Proteomic, and Metabolic Influences of Histidyl Dipeptides on the Heart. PMID:35730646
Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PMID:35714157
ANGT_HUMAN[448-462], an Anorexigenic Peptide Identified Using Plasma Peptidomics. PMID:35702602
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. PMID:35640880
Redox regulation of PTPN22 affects the severity of T-cell-dependent autoimmune inflammation. PMID:35587260
Accurate Proteomewide Measurement of Methionine Oxidation in Aging Mouse Brains. PMID:35584362
A Middle Pleistocene Denisovan molar from the Annamite Chain of northern Laos. PMID:35581187
Dynamic human liver proteome atlas reveals functional insights into disease pathways. PMID:35579278
Skin Cancer-Associated S. aureus Strains Can Induce DNA Damage in Human Keratinocytes by Downregulating DNA Repair and Promoting Oxidative Stress. PMID:35565272
Repeated Exposure of Macrophages to Synthetic Amorphous Silica Induces Adaptive Proteome Changes and a Moderate Cell Activation. PMID:35564134
Multiomic Profiling Identified EGF Receptor Signaling as a Potential Inhibitor of Type I Interferon Response in Models of Oncolytic Therapy by Vesicular Stomatitis Virus. PMID:35563635
Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data. PMID:35549345
Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach. PMID:35500907
A Non-Hazardous Deparaffinization Protocol Enables Quantitative Proteomics of Core Needle Biopsy-Sized Formalin-Fixed and Paraffin-Embedded (FFPE) Tissue Specimens. PMID:35457260
Simulation Testbed for Evaluating Distributed Querying and Searching of Mass Spectrometry Big Data in a Network-based Infrastructure. PMID:35425943
A Single Bout of Ultra-Endurance Exercise Reveals Early Signs of Muscle Aging in Master Athletes. PMID:35409073
Comparative Proteomic Profiling of Ectosomes Derived from Thyroid Carcinoma and Normal Thyroid Cells Uncovers Multiple Proteins with Functional Implications in Cancer. PMID:35406748
In Vitro Erythropoiesis at Different pO2 Induces Adaptations That Are Independent of Prior Systemic Exposure to Hypoxia. PMID:35406648
The role of albumin and the extracellular matrix on the pathophysiology of oedema formation in severe malnutrition. PMID:35398787
Proteomic profiling of postmortem prefrontal cortex tissue of suicide completers. PMID:35383147
Auxiliary ATP binding sites support DNA unwinding by RecBCD. PMID:35379800
SEED LIPID DROPLET PROTEIN1, SEED LIPID DROPLET PROTEIN2, and LIPID DROPLET PLASMA MEMBRANE ADAPTOR mediate lipid droplet-plasma membrane tethering. PMID:35348751
The pattern of apolipoprotein A-I lysine carbamylation reflects its lipidation state and the chemical environment within human atherosclerotic aorta. PMID:35304099
Metaproteomics as a tool for studying the protein landscape of human-gut bacterial species. PMID:35302987
N-terminome analyses underscore the prevalence of SPPL3-mediated intramembrane proteolysis among Golgi-resident enzymes and its role in Golgi enzyme secretion. PMID:35279766
OpenCell: Endogenous tagging for the cartography of human cellular organization. PMID:35271311
The schizophrenia-associated variant in SLC39A8 alters protein glycosylation in the mouse brain. PMID:35260802
AP-4-mediated axonal transport controls endocannabinoid production in neurons. PMID:35217685
Review of Liquid Chromatography-Mass Spectrometry-Based Proteomic Analyses of Body Fluids to Diagnose Infectious Diseases. PMID:35216306
Host Defense Peptides LL-37 and Lactoferrin Trigger ET Release from Blood-Derived Circulating Monocytes. PMID:35203676
Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics. PMID:35132134
Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics. PMID:35119864
Path to Clonal Theranostics in Luminal Breast Cancers. PMID:35096604
Viral immune evasins impact antigen presentation by allele-specific trapping of MHC I at the peptide-loading complex. PMID:35087068
Comparison of Different Label-Free Techniques for the Semi-Absolute Quantification of Protein Abundance. PMID:35076627
Standard Flow Multiplexed Proteomics (SFloMPro)-An Accessible Alternative to NanoFlow Based Shotgun Proteomics. PMID:35076613
Novel γ-sarcoglycan interactors in murine muscle membranes. PMID:35065666
Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2. PMID:35058437
Deciphering Biomarkers for Leptomeningeal Metastasis in Malignant Hemopathies (Lymphoma/Leukemia) Patients by Comprehensive Multipronged Proteomics Characterization of Cerebrospinal Fluid. PMID:35053611
Comparative Proteomics of Coxiella like Endosymbionts (CLEs) in the Symbiotic Organs of Rhipicephalus sanguineus Ticks. PMID:35019702
Temporal Quantitative Phosphoproteomics Profiling of Interleukin-33 Signaling Network Reveals Unique Modulators of Monocyte Activation. PMID:35011700
Dichotomous Responses to Chronic Fetal Hypoxia Lead to a Predetermined Aging Phenotype. PMID:34958949
Sequestosome 1 Is Part of the Interaction Network of VAPB. PMID:34948065
Deepening into Intracellular Signaling Landscape through Integrative Spatial Proteomics and Transcriptomics in a Lymphoma Model. PMID:34944421
Perspective of the GEMSTONE Consortium on Current and Future Approaches to Functional Validation for Skeletal Genetic Disease Using Cellular, Molecular and Animal-Modeling Techniques. PMID:34938269
Proteomic mapping of atrial and ventricular heart tissue in patients with aortic valve stenosis. PMID:34937869
4-Deoxy-4-fluoro-GalNAz (4FGalNAz) Is a Metabolic Chemical Reporter of O-GlcNAc Modifications, Highlighting the Notable Substrate Flexibility of O-GlcNAc Transferase. PMID:34931806
Hyperosmolarity adversely impacts recombinant protein synthesis by Yarrowia lipolytica-molecular background revealed by quantitative proteomics. PMID:34913994
Salivary Proteome Profile of Women during Fertile Phase of Menstrual Cycle as Characterized by Mass Spectrometry. PMID:34909380
iProX in 2021: connecting proteomics data sharing with big data. PMID:34871441
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. PMID:34862502
ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis. PMID:34862403
BtuB-Dependent Infection of the T5-like Yersinia Phage ϕR2-01. PMID:34834977
Biomimetic Nanoparticles Coated with Bacterial Outer Membrane Vesicles as a New-Generation Platform for Biomedical Applications. PMID:34834302
Fox Serum Proteomics Analysis Suggests Host-Specific Responses to Angiostrongylus vasorum Infection in Canids. PMID:34832667
Systemic Effects of Hemorrhagic Snake Venom Metalloproteinases: Untargeted Peptidomics to Explore the Pathodegradome of Plasma Proteins. PMID:34822548
The Angiostrongylus vasorum Excretory/Secretory and Surface Proteome Contains Putative Modulators of the Host Coagulation. PMID:34796127
The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana. PMID:34740825
Truncation of the TPR domain of OGT alters substrate and glycosite selection. PMID:34725712
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. PMID:34723319
DeepLC can predict retention times for peptides that carry as-yet unseen modifications. PMID:34711972
Bioinformatics in Immunoglobulin Glycosylation Analysis. PMID:34687011
Proteomic analysis of the host-pathogen interface in experimental cholera. PMID:34675415
PGRMC1 acts as a size-selective cargo receptor to drive ER-phagic clearance of mutant prohormones. PMID:34645803
Single-cell RNA-seq unravels alterations of the human spermatogonial stem cell compartment in patients with impaired spermatogenesis. PMID:34622232
A dual-function RNA balances carbon uptake and central metabolism in Vibrio cholerae. PMID:34612526
The growing need for controlled data access models in clinical proteomics and metabolomics. PMID:34599180
A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity. PMID:34591642
A protein interaction landscape of breast cancer. PMID:34591612
Proteomics-Based Retinal Target Engagement Analysis and Retina-Targeted Delivery of 17β-Estradiol by the DHED Prodrug for Ocular Neurotherapy in Males. PMID:34575465
Subcellular proteomics. PMID:34549195
Data Management and Modeling in Plant Biology. PMID:34539712
Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans. PMID:34535749
Utilizing thermal proteome profiling to identify the molecular targets of anti-leishmanial compounds. PMID:34467225
Global Lysine Acetylome Analysis of LPS-Stimulated HepG2 Cells Identified Hyperacetylation of PKM2 as a Metabolic Regulator in Sepsis. PMID:34445236
Proteomic-Based Analysis of Hypoxia- and Physioxia-Responsive Proteins and Pathways in Diffuse Large B-Cell Lymphoma. PMID:34440794
Quantitative Proteomics Reveals Significant Differences between Mouse Brain Formations in Expression of Proteins Involved in Neuronal Plasticity during Aging. PMID:34440790
The Integrity of the HMR complex is necessary for centromeric binding and reproductive isolation in Drosophila. PMID:34424906
The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource. PMID:34411258
Survival analysis in breast cancer using proteomic data from four independent datasets. PMID:34408238
Bacteriophages fEV-1 and fD1 Infect Yersinia pestis. PMID:34372590
ppx: Programmatic Access to Proteomics Data Repositories. PMID:34342226
GHB analogs confer neuroprotection through specific interaction with the CaMKIIα hub domain. PMID:34330837
Spatial epi-proteomics enabled by histone post-translational modification analysis from low-abundance clinical samples. PMID:34315505
Immunopeptidomics-Guided Warehouse Design for Peptide-Based Immunotherapy in Chronic Lymphocytic Leukemia. PMID:34305947
Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric. PMID:34287363
Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database. PMID:34279596
GIP_HUMAN[22-51] is a new proatherogenic peptide identified by native plasma peptidomics. PMID:34262109
Chronic binge alcohol and ovariectomy dysregulate omental adipose tissue metaboproteome in simian immunodeficiency virus-infected female macaques. PMID:34252326
Glycan Compositions with GlyConnect Compozitor to Enhance Glycopeptide Identification. PMID:34236658
Site-Specific N- and O-Glycosylation Analysis of Human Plasma Fibronectin. PMID:34211961
ATR regulates neuronal activity by modulating presynaptic firing. PMID:34210973
Old World Vipers-A Review about Snake Venom Proteomics of Viperinae and Their Variations. PMID:34204565
Proteomic Profiling of Ectosomes Derived from Paired Urothelial Bladder Cancer and Normal Cells Reveals the Presence of Biologically-Relevant Molecules. PMID:34202855
Changes in the Cell Wall Proteome of Leaves in Response to High Temperature Stress in Brachypodium distachyon. PMID:34201710
Absolute Proteome Analysis of Hippocampus, Cortex and Cerebellum in Aged and Young Mice Reveals Changes in Energy Metabolism. PMID:34201282
In-depth proteomics analysis of sentinel lymph nodes from individuals with endometrial cancer. PMID:34195683
Proteomic Portraits Reveal Evolutionarily Conserved and Divergent Responses to Spinal Cord Injury. PMID:34129941
Structure of Tau filaments in Prion protein amyloidoses. PMID:34128081
Time-Dependent Analysis of Paenarthrobacter nicotinovorans pAO1 Nicotine-Related Proteome. PMID:34124447
Extracellular Vesicle Proteome of Breast Cancer Patients with and Without Cognitive Impairment Following Anthracycline-based Chemotherapy: An Exploratory Study. PMID:34103887
Identification of an RNA sponge that controls the RoxS riboregulator of central metabolism in Bacillus subtilis. PMID:34096591
Proteomic Analyses of Vitreous in Proliferative Diabetic Retinopathy: Prior Studies and Future Outlook. PMID:34070658
Long-Term Exposure to Nanosized TiO2 Triggers Stress Responses and Cell Death Pathways in Pulmonary Epithelial Cells. PMID:34069552
Characterization of Extracellular Vesicle Cargo in Sjögren's Syndrome through a SWATH-MS Proteomics Approach. PMID:34064456
Cryo-EM structure of the mature and infective Mayaro virus at 4.4 Å resolution reveals features of arthritogenic alphaviruses. PMID:34031424
Quality standards in proteomics research facilities: Common standards and quality procedures are essential for proteomics facilities and their users. PMID:34009726
Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile. PMID:34006648
PERCEPTRON: an open-source GPU-accelerated proteoform identification pipeline for top-down proteomics. PMID:33999207
Construction of Unified Human Antimicrobial and Immunomodulatory Peptide Database and Examination of Antimicrobial and Immunomodulatory Peptides in Alzheimer's Disease Using Network Analysis of Proteomics Datasets. PMID:33995478
A data-independent acquisition-based global phosphoproteomics system enables deep profiling. PMID:33953186
ST6Gal1 targets the ectodomain of ErbB2 in a site-specific manner and regulates gastric cancer cell sensitivity to trastuzumab. PMID:33947960
Proteomic Studies of Primary Acute Myeloid Leukemia Cells Derived from Patients Before and during Disease-Stabilizing Treatment Based on All-Trans Retinoic Acid and Valproic Acid. PMID:33946813
Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain. PMID:33936146
Formation of polarized contractile interfaces by self-organized Toll-8/Cirl GPCR asymmetry. PMID:33932333
Biochemical and Proteomic Changes in the Roots of M4 Grapevine Rootstock in Response to Nitrate Availability. PMID:33920578
Analysis of Astroglial Secretomic Profile in the Mecp2-Deficient Male Mouse Model of Rett Syndrome. PMID:33919253
Understanding the Molecular Mechanism of miR-877-3p Could Provide Potential Biomarkers and Therapeutic Targets in Squamous Cell Carcinoma of the Cervix. PMID:33917510
Purification and quantitative proteomic analysis of cell bodies and protrusions. PMID:33912849
Knock out of specific maternal vitellogenins in zebrafish (Danio rerio) evokes vital changes in egg proteomic profiles that resemble the phenotype of poor quality eggs. PMID:33910518
Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss. PMID:33900085
Proteomic Changes Associated With Sperm Fertilizing Ability in Meat-Type Roosters. PMID:33898456
Urinary Metabolomic and Proteomic Analyses in a Mouse Model of Prostatic Inflammation. PMID:33870183
GeenaR: A Web Tool for Reproducible MALDI-TOF Analysis. PMID:33854526
Metformin impairs cisplatin resistance effects in A549 lung cancer cells through mTOR signaling and other metabolic pathways. PMID:33846781
Impact of whole-body versus nose-only inhalation exposure systems on systemic, respiratory, and cardiovascular endpoints in a 2-month cigarette smoke exposure study in the ApoE-/- mouse model. PMID:33825214
IonQuant Enables Accurate and Sensitive Label-Free Quantification With FDR-Controlled Match-Between-Runs. PMID:33813065
Label-Free Quantitative Proteomic Analysis of Nitrogen Starvation in Arabidopsis Root Reveals New Aspects of H2S Signaling by Protein Persulfidation. PMID:33805243
Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects. PMID:33794662
Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis. PMID:33785790
Improved SILAC Quantification with Data-Independent Acquisition to Investigate Bortezomib-Induced Protein Degradation. PMID:33764077
Cooperative treatment effectiveness of ATR and HSP90 inhibition in Ewing's sarcoma cells. PMID:33743824
Species-Specific Immunological Reactivities Depend on the Cell-Wall Organization of the Two Aspergillus, Aspergillus fumigatus and A. flavus. PMID:33718288
Schwann cell plasticity regulates neuroblastic tumor cell differentiation via epidermal growth factor-like protein 8. PMID:33712610
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. PMID:33711481
PhyloQuant approach provides insights into Trypanosoma cruzi evolution using a systems-wide mass spectrometry-based quantitative protein profile. PMID:33707618
Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue. PMID:33683571
Packed red blood cells inhibit T-cell activation via ROS-dependent signaling pathways. PMID:33676898
OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons. PMID:33663372
System-wide identification and prioritization of enzyme substrates by thermal analysis. PMID:33637753
Type I and type V procollagen triple helix uses different subsets of the molecular ensemble for lysine posttranslational modifications in the rER. PMID:33631195
Investigating an increase in Florida manatee mortalities using a proteomic approach. PMID:33608577
Biogeographical venom variation in the Indian spectacled cobra (Naja naja) underscores the pressing need for pan-India efficacious snakebite therapy. PMID:33600405
Determinants of genome-wide distribution and evolution of uORFs in eukaryotes. PMID:33597535
mokapot: Fast and Flexible Semisupervised Learning for Peptide Detection. PMID:33596079
Centrosome amplification mediates small extracellular vesicle secretion via lysosome disruption. PMID:33592190
Proteomics Complementation of the Rat Uterotrophic Assay for Estrogenic Endocrine Disruptors: A Roadmap of Advancing High Resolution Mass Spectrometry-Based Shotgun Survey to Targeted Biomarker Quantifications. PMID:33567512
Large-Scale Proteomic Analysis of Follicular Lymphoma Reveals Extensive Remodeling of Cell Adhesion Pathway and Identifies Hub Proteins Related to the Lymphomagenesis. PMID:33562532
Proteomic Profiling and Artificial Intelligence for Hepatocellular Carcinoma Translational Medicine. PMID:33562077
Simplified and Unified Access to Cancer Proteogenomic Data. PMID:33560848
Human DDK rescues stalled forks and counteracts checkpoint inhibition at unfired origins to complete DNA replication. PMID:33545059
Rab7-harboring vesicles are carriers of the transferrin receptor through the biosynthetic secretory pathway. PMID:33523982
Parthenolide Destabilizes Microtubules by Covalently Modifying Tubulin. PMID:33482110
Eicosanoid Content in Fetal Calf Serum Accounts for Reproducibility Challenges in Cell Culture. PMID:33467719
Ethical Principles, Constraints and Opportunities in Clinical Proteomics. PMID:33453411
Suprabasin-derived bioactive peptides identified by plasma peptidomics. PMID:33441610
Quantitative proteomics analysis of Angiostrongylus vasorum-induced alterations in dog serum sheds light on the pathogenesis of canine angiostrongylosis. PMID:33431914
CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana highlighted by proteomics, molecular and biochemical studies. PMID:33428654
Intestinal differentiation involves cleavage of histone H3 N-terminal tails by multiple proteases. PMID:33398338
The Impact of Biomaterial Cell Contact on the Immunopeptidome. PMID:33392160
Improving the Identification and Coverage of Plant Transmembrane Proteins in Medicago Using Bottom-Up Proteomics. PMID:33391307
The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function. PMID:33383959
Comparative Proteomics Analysis Reveals Unique Early Signaling Response of Saccharomyces cerevisiae to Oxidants with Different Mechanism of Action. PMID:33375274
State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing. PMID:33362867
Protein Synthesis in the Developing Neocortex at Near-Atomic Resolution Reveals Ebp1-Mediated Neuronal Proteostasis at the 60S Tunnel Exit. PMID:33357414
Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulation. PMID:33349623
Multi-omics data integration considerations and study design for biological systems and disease. PMID:33347526
Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life. PMID:33329546
Registered report protocol: Quantitative analysis of septin Cdc10-associated proteome in Cryptococcus neoformans. PMID:33315917
Secretome Analysis of Inductive Signals for BM-MSC Transdifferentiation into Salivary Gland Progenitors. PMID:33260559
Aberrant (pro)renin receptor expression induces genomic instability in pancreatic ductal adenocarcinoma through upregulation of SMARCA5/SNF2H. PMID:33247206
The Human Adenovirus Type 2 Transcriptome: An Amazing Complexity of Alternatively Spliced mRNAs. PMID:33239457
Combined the SMAC mimetic and BCL2 inhibitor sensitizes neoadjuvant chemotherapy by targeting necrosome complexes in tyrosine aminoacyl-tRNA synthase-positive breast cancer. PMID:33239070
Efficient Confirmation of Plant Viral Proteins and Identification of Specific Viral Strains by nanoLC-ESI-Q-TOF Using Single-Leaf-Tissue Samples. PMID:33228257
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
Subcellular mRNA Localization Regulates Ribosome Biogenesis in Migrating Cells. PMID:33171110
Amyotrophic Lateral Sclerosis Is Accompanied by Protein Derangements in the Olfactory Bulb-Tract Axis. PMID:33167591
Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration. PMID:33154995
Preparation of Multi-omics Grade Extracellular Vesicles by Density-Based Fractionation of Urine. PMID:33111109
Identification, Characterization and Synthesis of Walterospermin, a Sperm Motility Activator from the Egyptian Black Snake Walterinnesia aegyptia Venom. PMID:33096770
A high-stringency blueprint of the human proteome. PMID:33067450
The tissue proteome in the multi-omic landscape of kidney disease. PMID:33028957
Label-Free Mass Spectrometry-Based Quantification of Linker Histone H1 Variants in Clinical Samples. PMID:33020374
Investigating Patterns of Immune Interaction in Ovarian Cancer: Probing the O-glycoproteome by the Macrophage Galactose-Like C-type Lectin (MGL). PMID:33019700
ADAM17 cytoplasmic domain modulates Thioredoxin-1 conformation and activity. PMID:33011677
The STRIPAK signaling complex regulates dephosphorylation of GUL1, an RNA-binding protein that shuttles on endosomes. PMID:32997654
Clearance of senescent cells during cardiac ischemia-reperfusion injury improves recovery. PMID:32996233
Extracellular vesicles in patients in the acute phase of psychosis and after clinical improvement: an explorative study. PMID:32995075
Proteomic Mapping of Multifunctional Complexes Within Triatomine Saliva. PMID:32984079
Dissecting the antibacterial activity of oxadiazolone-core derivatives against Mycobacterium abscessus. PMID:32946441
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. PMID:32929271
Progressive Proteome Changes in the Myocardium of a Pig Model for Duchenne Muscular Dystrophy. PMID:32927262
Insights into glucocorticoid responses derived from omics studies. PMID:32910934
Extrinsic immune cell-derived, but not intrinsic oligodendroglial factors contribute to oligodendroglial differentiation block in multiple sclerosis. PMID:32894330
Proteomic Characterization of the Olfactory Molecular Imbalance in Dementia with Lewy Bodies. PMID:32887355
The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated Degradation. PMID:32868373
Co-expression analysis of pancreatic cancer proteome reveals biology and prognostic biomarkers. PMID:32860207
Marker Identification of the Grade of Dysplasia of Intraductal Papillary Mucinous Neoplasm in Pancreatic Cyst Fluid by Quantitative Proteomic Profiling. PMID:32842508
Analytical Guidelines for co-fractionation Mass Spectrometry Obtained through Global Profiling of Gold Standard Saccharomyces cerevisiae Protein Complexes. PMID:32817346
Identification of modified peptides using localization-aware open search. PMID:32792501
Proteomic analysis of synovial fluid from rheumatic arthritis and spondyloarthritis patients. PMID:32782445
Sirt2 Inhibition Enhances Metabolic Fitness and Effector Functions of Tumor-Reactive T Cells. PMID:32768387
Cellular response of Brevibacterium casei #NIOSBA88 to arsenic and chromium-a proteomic approach. PMID:32729030
Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity. PMID:32726803
Discovery of treatment for nerve agents targeting a new metabolic pathway. PMID:32720192
Deep Proteomic Deconvolution of Interferons and HBV Transfection Effects on a Hepatoblastoma Cell Line. PMID:32685848
Proteomics Using Protease Alternatives to Trypsin Benefits from Sequential Digestion with Trypsin. PMID:32628831
Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant. PMID:32616513
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). PMID:32598315
Photosynthetic Metabolism and Nitrogen Reshuffling Are Regulated by Reversible Cysteine Thiol Oxidation Following Nitrogen Deprivation in Chlamydomonas. PMID:32585825
Proteomics of Galápagos Marine Iguanas Links Function of Femoral Gland Proteins to the Immune System. PMID:32581039
Time-series proteomic study of the response of HK-2 cells to hyperglycemic, hypoxic diabetic-like milieu. PMID:32579601
Discovery of a Potent and Selective Covalent Inhibitor and Activity-Based Probe for the Deubiquitylating Enzyme UCHL1, with Antifibrotic Activity. PMID:32579346
System-wide analyses of the fission yeast poly(A)+ RNA interactome reveal insights into organization and function of RNA-protein complexes. PMID:32554781
Gain-of-function genetic screen of the kinome reveals BRSK2 as an inhibitor of the NRF2 transcription factor. PMID:32546533
Atomic-resolution mapping of transcription factor-DNA interactions by femtosecond laser crosslinking and mass spectrometry. PMID:32541649
Dynamic rewiring of the human interactome by interferon signaling. PMID:32539747
Extracellular Vesicle-Contained microRNA of C. elegans as a Tool to Decipher the Molecular Basis of Nematode Parasitism. PMID:32523895
Dynamic proteomic analysis of Aedes aegypti Aag-2 cells infected with Mayaro virus. PMID:32522239
Tandem Mass Tag (TMT)-based quantitative proteomics reveals potential targets associated with onset of Sub-clinical Mastitis in cows. PMID:32518370
A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. PMID:32511329
Automation and low-cost proteomics for characterization of the protein corona: experimental methods for big data. PMID:32500258
A mouse SWATH-mass spectrometry reference spectral library enables deconvolution of species-specific proteomic alterations in human tumour xenografts. PMID:32493768
Quantitative proteomic analysis of trypsin-treated extracellular vesicles to identify the real-vesicular proteins. PMID:32489530
Identification of TUBB2A by quantitative proteomic analysis as a novel biomarker for the prediction of distant metastatic breast cancer. PMID:32489334
Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis. PMID:32486122
Determination of a Tumor-Promoting Microenvironment in Recurrent Medulloblastoma: A Multi-Omics Study of Cerebrospinal Fluid. PMID:32466393
Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes. PMID:32453760
Cdh1-APC Regulates Protein Synthesis and Stress Granules in Neurons through an FMRP-Dependent Mechanism. PMID:32434143
A Fast and Memory-Efficient Spectral Library Search Algorithm Using Locality-Sensitive Hashing. PMID:32415809
TGFam-Finder: a novel solution for target-gene family annotation in plants. PMID:32392385
The Hippo Pathway Transducers YAP1/TEAD Induce Acquired Resistance to Trastuzumab in HER2-Positive Breast Cancer. PMID:32365528
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. PMID:32353859
Actinobacterial Degradation of 2-Hydroxyisobutyric Acid Proceeds via Acetone and Formyl-CoA by Employing a Thiamine-Dependent Lyase Reaction. PMID:32351493
Inhibition of the autophagic protein ULK1 attenuates axonal degeneration in vitro and in vivo, enhances translation, and modulates splicing. PMID:32341448
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of Citrus limon Response to Graft Inoculation by Candidatus Liberibacter asiaticus. PMID:32338516
Trichoplein binds PCM1 and controls endothelial cell function by regulating autophagy. PMID:32337819
Moesin (MSN) as a Novel Proteome-Based Diagnostic Marker for Early Detection of Invasive Bladder Urothelial Carcinoma in Liquid-Based Cytology. PMID:32326232
A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells. PMID:32321993
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Quantitative Proteomics Reveals Docosahexaenoic Acid-Mediated Neuroprotective Effects in Lipopolysaccharide-Stimulated Microglial Cells. PMID:32302149
Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine. PMID:32284825
Identifying Sialylation Linkages at the Glycopeptide Level by Glycosyltransferase Labeling Assisted Mass Spectrometry (GLAMS). PMID:32271005
HDACi mediate UNG2 depletion, dysregulated genomic uracil and altered expression of oncoproteins and tumor suppressors in B- and T-cell lines. PMID:32264925
SUMOylation Protects FASN Against Proteasomal Degradation in Breast Cancer Cells Treated with Grape Leaf Extract. PMID:32244364
Temporal Dynamics of High-Density Lipoprotein Proteome in Diet-Controlled Subjects with Type 2 Diabetes. PMID:32235466
Comprehensive chemical proteomics for target deconvolution of the redox active drug auranofin. PMID:32199331
A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment. PMID:32195664
Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia. PMID:32192169
A multi-layered structure of the interphase chromocenter revealed by proximity-based biotinylation. PMID:32182352
Standardizing Proteomics Workflow for Liquid Chromatography-Mass Spectrometry: Technical and Statistical Considerations. PMID:32148359
In silico Prediction of Protein-Protein Interaction Network Induced by Manganese II in Meyerozyma guilliermondii. PMID:32140149
Probing the Environment of Emerin by Enhanced Ascorbate Peroxidase 2 (APEX2)-Mediated Proximity Labeling. PMID:32138363
Quantitative Profiling of the Human Substantia Nigra Proteome from Laser-capture Microdissected FFPE Tissue. PMID:32132230
A Small Effort for Researchers, a Big Gain for Soil Metaproteomics. PMID:32117118
Tetraspanin-6 negatively regulates exosome production. PMID:32108028
Site-specific 5-hydroxytryptophan incorporation into apolipoprotein A-I impairs cholesterol efflux activity and high-density lipoprotein biogenesis. PMID:32098873
Proline: an efficient and user-friendly software suite for large-scale proteomics. PMID:32096818
Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma. PMID:32060274
3D mapping of native extracellular matrix reveals cellular responses to the microenvironment. PMID:32055794
Maternal Larp6 controls oocyte development, chorion formation and elevation. PMID:32054660
Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network. PMID:32053352
Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding. PMID:32049966
Matrix-Matched Calibration Curves for Assessing Analytical Figures of Merit in Quantitative Proteomics. PMID:32037841
Exposure to the Florida red tide dinoflagellate, Karenia brevis, and its associated brevetoxins induces ecophysiological and proteomic alterations in Porites astreoides. PMID:32032360
Phenotypic Adaption of Pseudomonas aeruginosa by Hacking Siderophores Produced by Other Microorganisms. PMID:32024770
Kinase Inhibitor Treatment of Patients with Advanced Cancer Results in High Tumor Drug Concentrations and in Specific Alterations of the Tumor Phosphoproteome. PMID:32024067
The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels. PMID:32016368
17β-Estradiol Delivered in Eye Drops: Evidence of Impact on Protein Networks and Associated Biological Processes in the Rat Retina through Quantitative Proteomics. PMID:32012756
Machine Learning Strategy That Leverages Large Data sets to Boost Statistical Power in Small-Scale Experiments. PMID:32009418
Proteomic Studies for the Investigation of γ-Globin Induction by Decitabine in Human Primary Erythroid Progenitor Cultures. PMID:31947809
Proteomics profiling and pathway analysis of hippocampal aging in rhesus monkeys. PMID:31941443
The Arabidopsis Protein CGL20 Is Required for Plastid 50S Ribosome Biogenesis. PMID:31937683
Guidance Document: Validation of a High-Performance Liquid Chromatography-Tandem Mass Spectrometry Immunopeptidomics Assay for the Identification of HLA Class I Ligands Suitable for Pharmaceutical Therapies. PMID:31937595
Large-scale and significant expression from pseudogenes in Sodalis glossinidius - a facultative bacterial endosymbiont. PMID:31922467
Development of a Retinal-Based Probe for the Profiling of Retinaldehyde Dehydrogenases in Cancer Cells. PMID:31893226
Sweet google O' mine-The importance of online search engines for MS-facilitated, database-independent identification of peptide-encoded book prefaces: A EUPA YPIC challenge entry. PMID:31890548
Peptidomic Analysis of Urine from Youths with Early Type 1 Diabetes Reveals Novel Bioactivity of Uromodulin Peptides In Vitro. PMID:31879271
Characterization of a human liver reference material fit for proteomics applications. PMID:31852895
The Proteomic Landscape of Pancreatic Ductal Adenocarcinoma Liver Metastases Identifies Molecular Subtypes and Associations with Clinical Response. PMID:31848187
ProTargetMiner as a proteome signature library of anticancer molecules for functional discovery. PMID:31844049
Dynamic proteome profiling of human pluripotent stem cell-derived pancreatic progenitors. PMID:31828876
Constrained De Novo Sequencing of neo-Epitope Peptides using Tandem Mass Spectrometry. PMID:31819927
Proteogenomics of Colorectal Cancer Liver Metastases: Complementing Precision Oncology with Phenotypic Data. PMID:31805664
Cardioinformatics: the nexus of bioinformatics and precision cardiology. PMID:31802103
Endothelial EphB4 maintains vascular integrity and transport function in adult heart. PMID:31782728
The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases. PMID:31744855
ProtRank: bypassing the imputation of missing values in differential expression analysis of proteomic data. PMID:31706265
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. PMID:31686107
Multifunctional temozolomide-loaded lipid superparamagnetic nanovectors: dual targeting and disintegration of glioblastoma spheroids by synergic chemotherapy and hyperthermia treatment. PMID:31663592
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. PMID:31599596
Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome. PMID:31578520
Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. PMID:31573204
Quantitative Proteomics of Uukuniemi Virus-host Cell Interactions Reveals GBF1 as Proviral Host Factor for Phleboviruses. PMID:31570497
Inhibition of TOR in Chlamydomonas reinhardtii Leads to Rapid Cysteine Oxidation Reflecting Sustained Physiological Changes. PMID:31569396
Overexpression of HMG-CoA synthase promotes Arabidopsis root growth and adversely affects glucosinolate biosynthesis. PMID:31557302
Vegetative Cell and Spore Proteomes of Clostridioides difficile Show Finite Differences and Reveal Potential Protein Markers. PMID:31557040
An integrated workflow for crosslinking mass spectrometry. PMID:31556486
Mice depleted for Exchange Proteins Directly Activated by cAMP (Epac) exhibit irregular liver regeneration in response to partial hepatectomy. PMID:31551444
Liver proteome dataset of Sparus aurata exposed to low temperatures. PMID:31528672
Phosphorylation of the multifunctional signal transducer B-cell adaptor protein (BCAP) promotes recruitment of multiple SH2/SH3 proteins including GRB2. PMID:31527084
Tandem RNA isolation reveals functional rearrangement of RNA-binding proteins on CDKN1B/p27Kip1 3'UTRs in cisplatin treated cells. PMID:31522610
Proteomic mapping by rapamycin-dependent targeting of APEX2 identifies binding partners of VAPB at the inner nuclear membrane. PMID:31519755
HDL flux is higher in patients with nonalcoholic fatty liver disease. PMID:31503515
High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification. PMID:31495056
Interrogation of a live-attenuated enterotoxigenic Escherichia coli vaccine highlights features unique to wild-type infection. PMID:31482013
A dataset describing a suite of novel antibody reagents for the RAS signaling network. PMID:31467290
Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome. PMID:31461451
Hepatic proteome network data in zebrafish (Danio rerio) liver following dieldrin exposure. PMID:31453304
Form III RubisCO-mediated transaldolase variant of the Calvin cycle in a chemolithoautotrophic bacterium. PMID:31451656
Proteomics Links Ubiquitin Chain Topology Change to Transcription Factor Activation. PMID:31444107
Strong anion exchange-mediated phosphoproteomics reveals extensive human non-canonical phosphorylation. PMID:31433507
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. PMID:31430157
Vascular Endothelial Receptor Tyrosine Phosphatase: Identification of Novel Substrates Related to Junctions and a Ternary Complex with EPHB4 and TIE2. PMID:31427368
Matrisome Properties of Scaffolds Direct Fibroblasts in Idiopathic Pulmonary Fibrosis. PMID:31426504
Type II Epithelial-Mesenchymal Transition Upregulates Protein N-Glycosylation To Maintain Proteostasis and Extracellular Matrix Production. PMID:31424945
Bortezomib administered prior to temozolomide depletes MGMT, chemosensitizes glioblastoma with unmethylated MGMT promoter and prolongs animal survival. PMID:31413318
Differential Protein Expression Profiles of Bronchoalveolar Lavage Fluid Following Lipopolysaccharide-Induced Direct and Indirect Lung Injury in Mice. PMID:31373289
Data on the expression of SRPK1a in mammals. PMID:31334320
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Multibatch TMT Reveals False Positives, Batch Effects and Missing Values. PMID:31332098
Analysis of networks of host proteins in the early time points following HIV transduction. PMID:31315557
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. PMID:31290668
A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer. PMID:31289117
Proteomic study of the membrane components of signalling cascades of Botrytis cinerea controlled by phosphorylation. PMID:31285484
Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes. PMID:31274288
VE-PTP inhibition stabilizes endothelial junctions by activating FGD5. PMID:31267715
A molecular switch from STAT2-IRF9 to ISGF3 underlies interferon-induced gene transcription. PMID:31266943
Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results. PMID:31260318
ARIH2 Is a Vif-Dependent Regulator of CUL5-Mediated APOBEC3G Degradation in HIV Infection. PMID:31253590
Cross-species complementation reveals conserved functions for EARLY FLOWERING 3 between monocots and dicots. PMID:31245666
Early-Onset Molecular Derangements in the Olfactory Bulb of Tg2576 Mice: Novel Insights Into the Stress-Responsive Olfactory Kinase Dynamics in Alzheimer's Disease. PMID:31244650
CTDP1 regulates breast cancer survival and DNA repair through BRCT-specific interactions with FANCI. PMID:31240132
Catabolism of Nucleic Acids by a Cystic Fibrosis Pseudomonas aeruginosa Isolate: An Adaptive Pathway to Cystic Fibrosis Sputum Environment. PMID:31214142
The heparin-binding proteome in normal pancreas and murine experimental acute pancreatitis. PMID:31211768
Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages. PMID:31208443
Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia). PMID:31203412
Quantitative Proteome Analysis Reveals Changes in the Protein Landscape During Grape Berry Development With a Focus on Vacuolar Transport Proteins. PMID:31156689
A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level. PMID:31154437
Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells. PMID:31142202
The human brain somatostatin interactome: SST binds selectively to P-type family ATPases. PMID:31136617
MiR-135a-5p Is Critical for Exercise-Induced Adult Neurogenesis. PMID:31130358
Cadmium tolerance pathway in Anopheles gambiae senso stricto. PMID:31121147
Airway response to respiratory syncytial virus has incidental antibacterial effects. PMID:31101811
MARMoSET - Extracting Publication-ready Mass Spectrometry Metadata from RAW Files. PMID:31097673
The most abundant cyst wall proteins of Acanthamoeba castellanii are lectins that bind cellulose and localize to distinct structures in developing and mature cyst walls. PMID:31095564
Junctional tumor suppressors interact with 14-3-3 proteins to control planar spindle alignment. PMID:31088859
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
R-DeeP: Proteome-wide and Quantitative Identification of RNA-Dependent Proteins by Density Gradient Ultracentrifugation. PMID:31076284
Protein expression profiling of plasma and lungs at different stages of metastatic development in a human triple negative breast cancer xenograft model. PMID:31042781
Exploring Regulation of Protein O-Glycosylation in Isogenic Human HEK293 Cells by Differential O-Glycoproteomics. PMID:31040225
Molecular insights into an ancient form of Paget's disease of bone. PMID:31036632
The Plethora of Angiotensin-Converting Enzyme-Processed Peptides in Mouse Plasma. PMID:31021607
MetaMSD: meta analysis for mass spectrometry data. PMID:30993040
Plasma protein adsorption on Fe3O4-PEG nanoparticles activates the complement system and induces an inflammatory response. PMID:30988608
Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition. PMID:30979939
Sensitive Quantitative Proteomics of Human Hematopoietic Stem and Progenitor Cells by Data-independent Acquisition Mass Spectrometry. PMID:30975897
ECT2 associated to PRICKLE1 are poor-prognosis markers in triple-negative breast cancer. PMID:30971775
A complex containing lysine-acetylated actin inhibits the formin INF2. PMID:30962575
A fungal substrate mimicking molecule suppresses plant immunity via an inter-kingdom conserved motif. PMID:30952847
WNT5A is transported via lipoprotein particles in the cerebrospinal fluid to regulate hindbrain morphogenesis. PMID:30940800
Sweet and Sour Ehrlichia: Glycoproteomics and Phosphoproteomics Reveal New Players in Ehrlichia ruminantium Physiology and Pathogenesis. PMID:30930869
SUMOylation promotes protective responses to DNA-protein crosslinks. PMID:30914427
A conserved major facilitator superfamily member orchestrates a subset of O-glycosylation to aid macrophage tissue invasion. PMID:30910009
Evaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems. PMID:30884231
Assembly of a heptameric STRIPAK complex is required for coordination of light-dependent multicellular fungal development with secondary metabolism in Aspergillus nidulans. PMID:30883543
Evaluation of linear models and missing value imputation for the analysis of peptide-centric proteomics. PMID:30871482
Consequences of impaired 1-MDa TIC complex assembly for the abundance and composition of chloroplast high-molecular mass protein complexes. PMID:30865669
Water stress combined with sulfur deficiency in pea affects yield components but mitigates the effect of deficiency on seed globulin composition. PMID:30855667
Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells. PMID:30843680
The impact of the glucagon-like peptide 1 receptor agonist liraglutide on the streptozotocin-induced diabetic mouse kidney proteome. PMID:30806030
Proteome profiling of triple negative breast cancer cells overexpressing NOD1 and NOD2 receptors unveils molecular signatures of malignant cell proliferation. PMID:30791886
Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. PMID:30783145
Engineered transfer RNAs for suppression of premature termination codons. PMID:30778053
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues. PMID:30777892
Intact protein mass spectrometry reveals intraspecies variations in venom composition of a local population of Vipera kaznakovi in Northeastern Turkey. PMID:30763806
Chaperone activation and client binding of a 2-cysteine peroxiredoxin. PMID:30737390
Integration of Two In-depth Quantitative Proteomics Approaches Determines the Kallikrein-related Peptidase 7 (KLK7) Degradome in Ovarian Cancer Cell Secretome. PMID:30705123
Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimer's disease. PMID:30691479
Human Testis Phosphoproteome Reveals Kinases as Potential Targets in Spermatogenesis and Testicular Cancer. PMID:30683686
Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function. PMID:30679422
Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection. PMID:30659199
Sucrose Metabolism in Haloarchaea: Reassessment Using Genomics, Proteomics, and Metagenomics. PMID:30658981
Naja annulifera Snake: New insights into the venom components and pathogenesis of envenomation. PMID:30657756
Molecular mechanisms of bleeding disorderassociated GFI1BQ287* mutation and its affected pathways in megakaryocytes and platelets. PMID:30655368
Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry. PMID:30651306
Clustering of Tau fibrils impairs the synaptic composition of α3-Na+/K+-ATPase and AMPA receptors. PMID:30630857
A Mass Spectrometry-Based Profiling of Interactomes of Viral DDB1- and Cullin Ubiquitin Ligase-Binding Proteins Reveals NF-κB Inhibitory Activity of the HIV-2-Encoded Vpx. PMID:30619335
Decreased Antibiotic Susceptibility Driven by Global Remodeling of the Klebsiella pneumoniae Proteome. PMID:30617156
Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome. PMID:30611210
Membrane Proteomes and Ion Transporters in Bacillus anthracis and Bacillus subtilis Dormant and Germinating Spores. PMID:30602489
Human Platelet Protein Ubiquitylation and Changes following GPVI Activation. PMID:30597505
Cross-ID: Analysis and Visualization of Complex XL-MS-Driven Protein Interaction Networks. PMID:30575379
Combined Targeted Analysis of Metabolites and Proteins in Tear Fluid With Regard to Clinical Applications. PMID:30564511
Shotgun proteomics data on the impact of hyperglycaemia on platelet protein acetylation by aspirin. PMID:30560156
Laboratory strains of Bacillus anthracis exhibit pervasive alteration in expression of proteins related to sporulation under laboratory conditions relative to genetically related wild strains. PMID:30557394
Intelligence Algorithms for Protein Classification by Mass Spectrometry. PMID:30534555
Glucose intake hampers PKA-regulated HSP90 chaperone activity. PMID:30516470
Proteome-Wide Analysis of Cysteine Reactivity during Effector-Triggered Immunity. PMID:30510037
Profiling the proteomic inflammatory state of human astrocytes using DIA mass spectrometry. PMID:30501627
Metabolic adaptation of wheat grain contributes to a stable filling rate under heat stress. PMID:30476278
Deep proteome of human nNOS/NOS1-positive versus MOCK SH-SY5Y neuroblastoma cells under full nutrition, serum free starvation and rapamycin treatment. PMID:30456249
PPARγ maintains the metabolic heterogeneity and homeostasis of renal tubules. PMID:30420298
Novel protein signatures suggest progression to muscular invasiveness in bladder cancer. PMID:30419021
Proteome evolution under non-substitutable resource limitation. PMID:30405128
Predicting bacterial growth conditions from mRNA and protein abundances. PMID:30388153
Soluble Siglec-14 glycan-recognition protein is generated by alternative splicing and suppresses myeloid inflammatory responses. PMID:30377253
Organisms with alternative genetic codes resolve unassigned codons via mistranslation and ribosomal rescue. PMID:30375330
Nitric oxide contributes to protein homeostasis by S-nitrosylations of the chaperone HSPA8 and the ubiquitin ligase UBE2D. PMID:30368041
SNAREs SYP121 and SYP122 Mediate the Secretion of Distinct Cargo Subsets. PMID:30348815
Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection. PMID:30340407
PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex. PMID:30327463
Probing the contribution of individual polypeptide GalNAc-transferase isoforms to the O-glycoproteome by inducible expression in isogenic cell lines. PMID:30327431
Mining the cellular inventory of pyridoxal phosphate-dependent enzymes with functionalized cofactor mimics. PMID:30297752
Changes in mRNA abundance drive shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription. PMID:30281021
Chromosome 17 Missing Proteins: Recent Progress and Future Directions as Part of the neXt-MP50 Challenge. PMID:30280577
Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes. PMID:30266865
AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A. PMID:30262884
Updates of the In-Gel Digestion Method for Protein Analysis by Mass Spectrometry. PMID:30259661
Identification of Novel Natural Substrates of Fibroblast Activation Protein-alpha by Differential Degradomics and Proteomics. PMID:30257879
Time-resolved proteomics of adenovirus infected cells. PMID:30252905
iProX: an integrated proteome resource. PMID:30252093
Proteome Profiling by Label-Free Mass Spectrometry Reveals Differentiated Response of Campylobacter jejuni 81-176 to Sublethal Concentrations of Bile Acids. PMID:30246935
IgG-Independent Co-aggregation of FcεRI and FcγRIIB Results in LYN- and SHIP1-Dependent Tyrosine Phosphorylation of FcγRIIB in Murine Bone Marrow-Derived Mast Cells. PMID:30210494
Evaluation of Unconventional Protein Secretion by Saccharomyces cerevisiae and other Fungi. PMID:30200367
High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform. PMID:30190555
Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer. PMID:30185791
A Bordetella pertussis MgtC homolog plays a role in the intracellular survival. PMID:30161230
Dissecting the subcellular membrane proteome reveals enrichment of H+ (co-)transporters and vesicle trafficking proteins in acidic zones of Chara internodal cells. PMID:30157181
Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes. PMID:30152752
Plasmodium Parasites Viewed through Proteomics. PMID:30146456
Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo. PMID:30134841
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Spatial and temporal proteome dynamics of glioma cells during oncolytic adenovirus Delta-24-RGD infection. PMID:30123426
Gingival Exudatome Dynamics Implicate Inhibition of the Alternative Complement Pathway in the Protective Action of the C3 Inhibitor Cp40 in Nonhuman Primate Periodontitis. PMID:30111112
Evaluation of Serum Glycoprotein Biomarker Candidates for Detection of Esophageal Adenocarcinoma and Surveillance of Barrett's Esophagus. PMID:30097534
Comparative proteomics reveals a diagnostic signature for pulmonary head-and-neck cancer metastasis. PMID:30097507
Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers. PMID:30090875
PUX10 Is a Lipid Droplet-Localized Scaffold Protein That Interacts with CELL DIVISION CYCLE48 and Is Involved in the Degradation of Lipid Droplet Proteins. PMID:30087207
Comprehensive Snake Venomics of the Okinawa Habu Pit Viper, Protobothrops flavoviridis, by Complementary Mass Spectrometry-Guided Approaches. PMID:30060607
Global quantitative TPA-based proteomics of mouse brain structures reveals significant alterations in expression of proteins involved in neuronal plasticity during aging. PMID:30026405
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. PMID:30021884
Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress. PMID:30006488
The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research. PMID:30003207
Proteomics and Phosphoproteomics of Heat Stress-Responsive Mechanisms in Spinach. PMID:29997633
Screening for biomarkers reflecting the progression of Babesia microti infection. PMID:29970143
Quantitative Proteomic Analysis Identifies AHNAK (Neuroblast Differentiation-associated Protein AHNAK) as a Novel Candidate Biomarker for Bladder Urothelial Carcinoma Diagnosis by Liquid-based Cytology. PMID:29950347
Site-specific characterization of endogenous SUMOylation across species and organs. PMID:29942033
Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms. PMID:29939309
Proteomics Reveals Scope of Mycolactone-mediated Sec61 Blockade and Distinctive Stress Signature. PMID:29915147
Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics. PMID:29900110
⿿Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples. PMID:29900094
Quantitative phosphoproteomic analysis of the molecular substrates of sleep need. PMID:29899451
Negative feedback via RSK modulates Erk-dependent progression from naïve pluripotency. PMID:29895711
Encoding human serine phosphopeptides in bacteria for proteome-wide identification of phosphorylation-dependent interactions. PMID:29889213
Calcium-activated Chloride Channel Regulator 1 (CLCA1) Controls Mucus Expansion in Colon by Proteolytic Activity. PMID:29885864
The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen. PMID:29884134
Weibel-Palade Body Localized Syntaxin-3 Modulates Von Willebrand Factor Secretion From Endothelial Cells. PMID:29880488
Synergy of Sodium Nitroprusside and Nitrate in Inhibiting the Activity of Sulfate Reducing Bacteria in Oil-Containing Bioreactors. PMID:29867883
Unraveling Gardnerella vaginalis Surface Proteins Using Cell Shaving Proteomics. PMID:29867878
ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides. PMID:29848782
Aggregatibacter actinomycetemcomitans H-NS promotes biofilm formation and alters protein dynamics of other species within a polymicrobial oral biofilm. PMID:29844920
Biochemical Characterization of Isoniazid-resistant Mycobacterium tuberculosis: Can the Analysis of Clonal Strains Reveal Novel Targetable Pathways? PMID:29844232
Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities. PMID:29844191
Dual phosphorylation of Ric-8A enhances its ability to mediate G protein α subunit folding and to stimulate guanine nucleotide exchange. PMID:29844055
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). PMID:29791771
Loss of TIGAR Induces Oxidative Stress and Meiotic Defects in Oocytes from Obese Mice. PMID:29776966
Aurora B opposes PP1 function in mitosis by phosphorylating the conserved PP1-binding RVxF motif in PP1 regulatory proteins. PMID:29764992
Fragment-derived inhibitors of human N-myristoyltransferase block capsid assembly and replication of the common cold virus. PMID:29760414
Differentially abundant proteins associated with heterosis in the primary roots of popcorn. PMID:29758068
Quantitative Proteomics Analysis of Sporadic Medullary Thyroid Cancer Reveals FN1 as a Potential Novel Candidate Prognostic Biomarker. PMID:29739896
Identification of brain antigens recognized by autoantibodies in experimental autoimmune encephalomyelitis-induced animals treated with etomoxir or interferon-β. PMID:29728570
Evaluation of NCI-7 Cell Line Panel as a Reference Material for Clinical Proteomics. PMID:29718670
Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms. PMID:29713252
NUFIP1 is a ribosome receptor for starvation-induced ribophagy. PMID:29700228
Expansion of DUB functionality generated by alternative isoforms - USP35, a case study. PMID:29685892
The phosphorylated redox proteome of Chlamydomonas reinhardtii: Revealing novel means for regulation of protein structure and function. PMID:29673699
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. PMID:29657133
Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants. PMID:29654922
Remote Atmospheric Pressure Infrared Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry (Remote IR-MALDI MS) of Proteins. PMID:29653959
Polylysine is a Proteostasis Network-Engaging Structural Determinant. PMID:29634277
Extensive and systematic rewiring of histone post-translational modifications in cancer model systems. PMID:29618087
Quantifying extracellular matrix turnover in human lung scaffold cultures. PMID:29615673
Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging. PMID:29608613
Interactome analysis of transforming growth factor-β-activated kinase 1 in Helicobacter pylori-infected cells revealed novel regulators tripartite motif 28 and CDC37. PMID:29581850
Comparative Proteomics of Dying and Surviving Cancer Cells Improves the Identification of Drug Targets and Sheds Light on Cell Life/Death Decisions. PMID:29572246
Benchmarking common quantification strategies for large-scale phosphoproteomics. PMID:29535314
Paclitaxel Treatment and Proprotein Convertase 1/3 (PC1/3) Knockdown in Macrophages is a Promising Antiglioma Strategy as Revealed by Proteomics and Cytotoxicity Studies. PMID:29531019
Murine Gbp1 and Gbp2 are ubiquitinated independent of Toxoplasma gondii infection. PMID:29510761
Phosphoproteomics Analysis Identifies Novel Candidate Substrates of the Nonreceptor Tyrosine Kinase, Src-related Kinase Lacking C-terminal Regulatory Tyrosine and N-terminal Myristoylation Sites (SRMS). PMID:29496907
Mass spectrometric evidence for neuropeptide-amidating enzymes in Caenorhabditis elegans. PMID:29487130
"One-Pot" Sample Processing Method for Proteome-Wide Analysis of Microbial Cells and Spores. PMID:29484825
Comparative iTRAQ analysis of protein abundance in the human sinoatrial node and working cardiomyocytes. PMID:29484645
Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages. PMID:29481576
A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it. PMID:29479297
Quantitative Proteomics of Synaptosomal Fractions in a Rat Overexpressing Human DISC1 Gene Indicates Profound Synaptic Dysregulation in the Dorsal Striatum. PMID:29467617
Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. PMID:29467403
Angiogenic patterning by STEEL, an endothelial-enriched long noncoding RNA. PMID:29467285
Proteomic profiling of VCP substrates links VCP to K6-linked ubiquitylation and c-Myc function. PMID:29467282
Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases. PMID:29466423
BAG3 Overexpression and Cytoprotective Autophagy Mediate Apoptosis Resistance in Chemoresistant Breast Cancer Cells. PMID:29462756
Novel proteins from proteomic analysis of the trunk disease fungus Lasiodiplodia theobromae (Botryosphaeriaceae). PMID:29450146
Shotgun proteomics deciphered age/division of labor-related functional specification of three honeybee (Apis mellifera L.) exocrine glands. PMID:29447197
Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves. PMID:29447168
The Unique Features of Proteins Depicting the Chicken Amniotic Fluid. PMID:29444982
Initiating Events in Direct Cardiomyocyte Reprogramming. PMID:29444441
Phosphoproteomic analysis of the antitumor effects of ginsenoside Rg3 in human breast cancer cells. PMID:29435015
Mass Spectrometry-Based Proteomic Profiling of Thrombotic Material Obtained by Endovascular Thrombectomy in Patients with Ischemic Stroke. PMID:29414888
Analysis of essential gene dynamics under antibiotic stress in Streptococcus sanguinis. PMID:29393020
Large-scale intact glycopeptide identification by Mascot database search. PMID:29391424
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. PMID:29386051
Studies on the Proteome of Human Hair - Identification of Histones and Deamidated Keratins. PMID:29371649
Proteomics Profiling of CLL Versus Healthy B-cells Identifies Putative Therapeutic Targets and a Subtype-independent Signature of Spliceosome Dysregulation. PMID:29367434
Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC). PMID:29363612
Adrenergic receptor stimulation suppresses oxidative metabolism in isolated rat islets and Min6 cells. PMID:29360563
The histone methyltransferase DOT1L inhibits osteoclastogenesis and protects against osteoporosis. PMID:29348610
Flagellin Glycoproteomics of the Periodontitis Associated Pathogen Selenomonas sputigena Reveals Previously Not Described O-glycans and Rhamnose Fragment Rearrangement Occurring on the Glycopeptides. PMID:29339411
Molecular and functional signatures in a novel Alzheimer's disease mouse model assessed by quantitative proteomics. PMID:29338754
Donor age affects proteome composition of tenocyte-derived engineered tendon. PMID:29338716
The Plantain Proteome, a Focus on Allele Specific Proteins Obtained from Plantain Fruits. PMID:29333696
Comparative Venomics of the Vipera ammodytes transcaucasiana and Vipera ammodytes montandoni from Turkey Provides Insights into Kinship. PMID:29301241
Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response. PMID:29290610
Exploring the molecular complexity of Triatoma dimidiata sialome. PMID:29288089
Combined 15N-Labeling and TandemMOAC Quantifies Phosphorylation of MAP Kinase Substrates Downstream of MKK7 in Arabidopsis. PMID:29276520
Hypoxic 3D in vitro culture models reveal distinct resistance processes to TKIs in renal cancer cells. PMID:29270287
Stoichiometry, Absolute Abundance, and Localization of Proteins in the Bacillus cereus Spore Coat Insoluble Fraction Determined Using a QconCAT Approach. PMID:29260567
On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry. PMID:29256016
Specificity of Phosphorylation Responses to Mitogen Activated Protein (MAP) Kinase Pathway Inhibitors in Melanoma Cells. PMID:29255136
Mechanisms Connecting the Conserved Protein Kinases Ssp1, Kin1, and Pom1 in Fission Yeast Cell Polarity and Division. PMID:29249658
Proteomic Characterization of Prostate Cancer to Distinguish Nonmetastasizing and Metastasizing Primary Tumors and Lymph Node Metastases. PMID:29248718
High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome. PMID:29242379
Relative Quantitative Proteomic Analysis of Brucella abortus Reveals Metabolic Adaptation to Multiple Environmental Stresses. PMID:29238329
N-linked Glycan Micro-heterogeneity in Glycoproteins of Arabidopsis. PMID:29237727
Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds. PMID:29235492
Eml1 loss impairs apical progenitor spindle length and soma shape in the developing cerebral cortex. PMID:29229923
Multi-field query expansion is effective for biomedical dataset retrieval. PMID:29220457
Tetraspanin CD63 Bridges Autophagic and Endosomal Processes To Regulate Exosomal Secretion and Intracellular Signaling of Epstein-Barr Virus LMP1. PMID:29212935
Optimization of quantitative proteomic analysis of clots generated from plasma of patients with venous thromboembolism. PMID:29209155
Proteomics and metabolomics identify molecular mechanisms of aging potentially predisposing for chronic lymphocytic leukemia. PMID:29196338
Spectral Library Based Analysis of Arginine Phosphorylations in Staphylococcus aureus. PMID:29183913
Cerebrospinal fluid markers to distinguish bacterial meningitis from cerebral malaria in children. PMID:29181450
Proteomic profiling identifies markers for inflammation-related tumor-fibroblast interaction. PMID:29176937
Comparison of Quantitative Mass Spectrometry Platforms for Monitoring Kinase ATP Probe Uptake in Lung Cancer. PMID:29164889
Quantitative Mass Spectrometry-Based Proteomic Profiling for Precision Medicine in Prostate Cancer. PMID:29164064
A Comparative Proteome Profile of Female Mouse Gonads Suggests a Tight Link between the Electron Transport Chain and Meiosis Initiation. PMID:29158290
Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio). PMID:29145436
The Ndc80 complex targets Bod1 to human mitotic kinetochores. PMID:29142109
Fast, axis-agnostic, dynamically summarized storage and retrieval for mass spectrometry data. PMID:29141005
Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis. PMID:29125462
Cell-type-specific metabolic labeling of nascent proteomes in vivo. PMID:29106408
'Hotspots' of Antigen Presentation Revealed by Human Leukocyte Antigen Ligandomics for Neoantigen Prioritization. PMID:29104575
Preservation of the metaproteome: variability of protein preservation in ancient dental calculus. PMID:29098079
RNA sequencing and proteomics approaches reveal novel deficits in the cortex of Mecp2-deficient mice, a model for Rett syndrome. PMID:29090078
Quantitative proteomic Analysis Reveals up-regulation of caveolin-1 in FOXP3-overexpressed human gastric cancer cells. PMID:29089565
Proteomics dataset: The colon mucosa from inflammatory bowel disease patients, gastrointestinal asymptomic rheumatoid arthritis patients, and controls. PMID:29085871
Immune Repertoire after Immunization As Seen by Next-Generation Sequencing and Proteomics. PMID:29085363
Increased serotransferrin and ceruloplasmin turnover in diet-controlled patients with type 2 diabetes. PMID:29079528
Network-Driven Proteogenomics Unveils an Aging-Related Imbalance in the Olfactory IκBα-NFκB p65 Complex Functionality in Tg2576 Alzheimer's Disease Mouse Model. PMID:29077059
Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome. PMID:29073283
Green-fruited Solanum habrochaites lacks fruit-specific carotenogenesis due to metabolic and structural blocks. PMID:29048567
Advances in the Chromosome-Centric Human Proteome Project: looking to the future. PMID:29039980
Quantitative proteomics of a B12 -dependent alga grown in coculture with bacteria reveals metabolic tradeoffs required for mutualism. PMID:29034959
Proteolytic signatures define unique thrombin-derived peptides present in human wound fluid in vivo. PMID:29030565
Native KCC2 interactome reveals PACSIN1 as a critical regulator of synaptic inhibition. PMID:29028184
MALDI Mass Spectrometry Imaging: A Novel Tool for the Identification and Classification of Amyloidosis. PMID:28994248
Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers. PMID:28981749
The Encyclopedia of Proteome Dynamics: a big data ecosystem for (prote)omics. PMID:28981707
Selective aggregation of the splicing factor Hsh155 suppresses splicing upon genotoxic stress. PMID:28978642
In-depth phenotyping of lymphoblastoid cells suggests selective cellular vulnerability in Marinesco-Sjögren syndrome. PMID:28978133
Fast hyperbaric decompression after heliox saturation altered the brain proteome in rats. PMID:28977037
Crosstalk between glial and glioblastoma cells triggers the "go-or-grow" phenotype of tumor cells. PMID:28969644
Systematic Proteogenomic Approach To Exploring a Novel Function for NHERF1 in Human Reproductive Disorder: Lessons for Exploring Missing Proteins. PMID:28960081
Compliance with minimum information guidelines in public metabolomics repositories. PMID:28949328
TNFα affects CREB-mediated neuroprotective signaling pathways of synaptic plasticity in neurons as revealed by proteomics and phospho-proteomics. PMID:28947966
Quantitative multiplexed proteomics of Taenia solium cysts obtained from the skeletal muscle and central nervous system of pigs. PMID:28945737
Phosphoproteome-based kinase activity profiling reveals the critical role of MAP2K2 and PLK1 in neuronal autophagy. PMID:28933595
Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements. PMID:28927269
Spectral Libraries for SWATH-MS Assays for Drosophila melanogaster and Solanum lycopersicum. PMID:28922568
A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. PMID:28916541
Perturbed cholesterol and vesicular trafficking associated with dengue blocking in Wolbachia-infected Aedes aegypti cells. PMID:28904344
Heterodimeric capping protein is required for stereocilia length and width regulation. PMID:28899994
Monitoring storage induced changes in the platelet proteome employing label free quantitative mass spectrometry. PMID:28887518
Proline-dependent and basophilic kinases phosphorylate human TRPC6 at serine 14 to control channel activity through increased membrane expression. PMID:28877958
A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue Function. PMID:28877454
Interactome analysis of transcriptional coactivator multiprotein bridging factor 1 unveils a yeast AP-1-like transcription factor involved in oxidation tolerance of mycopathogen Beauveria bassiana. PMID:28871395
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
Pathogenic Leptospires Modulate Protein Expression and Post-translational Modifications in Response to Mammalian Host Signals. PMID:28848720
Updating In Vivo and In Vitro Phosphorylation and Methylation Sites of Voltage-Gated Kv7.2 Potassium Channels. PMID:28834300
Olfactory bulb neuroproteomics reveals a chronological perturbation of survival routes and a disruption of prohibitin complex during Alzheimer's disease progression. PMID:28831118
Automated assembly of species metabolomes through data submission into a public repository. PMID:28830114
Proteomic Response of Pseudomonas aeruginosa PAO1 Adhering to Solid Surfaces. PMID:28824592
Joint inflammation related citrullination of functional arginines in extracellular proteins. PMID:28811641
Identification and quantification of plasma free salusin-β, an endogenous parasympathomimetic peptide. PMID:28811505
Multiplexed Liquid Chromatography-Multiple Reaction Monitoring Mass Spectrometry Quantification of Cancer Signaling Proteins. PMID:28808993
Cryptosporidium parvum vaccine candidates are incompletely modified with O-linked-N-acetylgalactosamine or contain N-terminal N-myristate and S-palmitate. PMID:28792526
Bronchoalveolar Lavage Fluid Protein Expression in Acute Respiratory Distress Syndrome Provides Insights into Pathways Activated in Subjects with Different Outcomes. PMID:28785034
Multi-omics Analysis Sheds Light on the Evolution and the Intracellular Lifestyle Strategies of Spotted Fever Group Rickettsia spp. PMID:28775717
Quantitative Temporal in Vivo Proteomics Deciphers the Transition of Virus-Driven Myeloid Cells into M2 Macrophages. PMID:28768414
New criteria for the molecular identification of cereal grains associated with archaeological artefacts. PMID:28747692
Proteomic profiling of early degenerative retina of RCS rats. PMID:28730077
pyQms enables universal and accurate quantification of mass spectrometry data. PMID:28729385
Quantitative Assessment of the Effects of Trypsin Digestion Methods on Affinity Purification-Mass Spectrometry-based Protein-Protein Interaction Analysis. PMID:28726418
The influence of simulated microgravity on the proteome of Daphnia magna. PMID:28725717
Selective Affinity Enrichment of Nitrotyrosine-Containing Peptides for Quantitative Analysis in Complex Samples. PMID:28714690
System-Level and Granger Network Analysis of Integrated Proteomic and Metabolomic Dynamics Identifies Key Points of Grape Berry Development at the Interface of Primary and Secondary Metabolism. PMID:28713396
Respiratory Pathways Reconstructed by Multi-Omics Analysis in Melioribacter roseus, Residing in a Deep Thermal Aquifer of the West-Siberian Megabasin. PMID:28713355
PAT-H-MS coupled with laser microdissection to study histone post-translational modifications in selected cell populations from pathology samples. PMID:28702092
Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer. PMID:28692419
Changes of Protein Turnover in Aging Caenorhabditis elegans. PMID:28679685
Sec61 blockade by mycolactone inhibits antigen cross-presentation independently of endosome-to-cytosol export. PMID:28679634
Pseudomonas aeruginosa cells attached to a surface display a typical proteome early as 20 minutes of incubation. PMID:28678862
Comparative Proteomic Analysis of Flag Leaves Reveals New Insight into Wheat Heat Adaptation. PMID:28676819
HLA-E Presents Glycopeptides from the Mycobacterium tuberculosis Protein MPT32 to Human CD8+ T cells. PMID:28676677
Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. PMID:28675934
Comparison of fractionation proteomics for local SWATH library building. PMID:28664598
RhoA Inhibitor Treatment At Acute Phase of Spinal Cord Injury May Induce Neurite Outgrowth and Synaptogenesis. PMID:28659490
Somatostatin binds to the human amyloid β peptide and favors the formation of distinct oligomers. PMID:28650319
The hepatocyte proteome in organotypic rat liver models and the influence of the local microenvironment. PMID:28649179
A PLC-γ1 Feedback Pathway Regulates Lck Substrate Phosphorylation at the T-Cell Receptor and SLP-76 Complex. PMID:28644030
Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps. PMID:28628098
Characterisation of the circulating acellular proteome of healthy sheep using LC-MS/MS-based proteomics analysis of serum. PMID:28615994
Reconstruction of pathway modification induced by nicotinamide using multi-omic network analyses in triple negative breast cancer. PMID:28615672
Time-Dependent, HIV-Tat-Induced Perturbation of Human Neurons In Vitro: Towards a Model for the Molecular Pathology of HIV-Associated Neurocognitive Disorders. PMID:28611588
An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes. PMID:28601559
Salinity-Induced Palmella Formation Mechanism in Halotolerant Algae Dunaliella salina Revealed by Quantitative Proteomics and Phosphoproteomics. PMID:28588593
Data from proteome analysis of Lasiodiplodia theobromae (Botryosphaeriaceae). PMID:28580409
Proteomic analysis of the phycobiliprotein antenna of the cryptophyte alga Guillardia theta cultured under different light intensities. PMID:28540588
A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M. PMID:28535754
Differential Proteomic Analysis of Gender-dependent Hepatic Tumorigenesis in Hras12V Transgenic Mice. PMID:28512230
Large scale phosphoprotein profiling to explore Drosophila cold acclimation regulatory mechanisms. PMID:28490779
Firmiana: towards a one-stop proteomic cloud platform for data processing and analysis. PMID:28486446
Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co-Occurring Protein Pairs. PMID:28480704
Mass spectrometry data from label-free quantitative proteomic analysis of harmless and pathogenic strains of infectious microalgae, Prototheca spp. PMID:28480323
Complementary Benzophenone Cross-Linking/Mass Spectrometry Photochemistry. PMID:28430416
Reduced changes in protein compared to mRNA levels across non-proliferating tissues. PMID:28420336
Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots. PMID:28419154
The E. coli molecular phenotype under different growth conditions. PMID:28417974
Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions. PMID:28412930
Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C. PMID:28408760
Quantitative Proteomic Analysis of Mosquito C6/36 Cells Reveals Host Proteins Involved in Zika Virus Infection. PMID:28404849
Database-augmented Mass Spectrometry Analysis of Exosomes Identifies Claudin 3 as a Putative Prostate Cancer Biomarker. PMID:28396511
Quantitative analysis of the tomato nuclear proteome during Phytophthora capsici infection unveils regulators of immunity. PMID:28394025
Protein interaction networks at the host-microbe interface in Diaphorina citri, the insect vector of the citrus greening pathogen. PMID:28386418
Proteomic Analysis of Regulatory T Cells Reveals the Importance of Themis1 in the Control of Their Suppressive Function. PMID:28373295
Proteome Profiling of Wheat Shoots from Different Cultivars. PMID:28348574
The Wilms tumor protein Wt1 contributes to female fertility by regulating oviductal proteostasis. PMID:28334862
Effects of insulin and the glucagon-like peptide 1 receptor agonist liraglutide on the kidney proteome in db/db mice. PMID:28330952
Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos. PMID:28328971
Blind testing cross-linking/mass spectrometry under the auspices of the 11th critical assessment of methods of protein structure prediction (CASP11). PMID:28317030
Proteomic data on enzyme secretion and activity in the bacterium Chitinophaga pinensis. PMID:28317006
Deciphering the Acute Cellular Phosphoproteome Response to Irradiation with X-rays, Protons and Carbon Ions. PMID:28302921
Sex differences in the molecular signature of the developing mouse hippocampus. PMID:28302071
Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3. PMID:28270225
Quirks of Error Estimation in Cross-Linking/Mass Spectrometry. PMID:28267312
A temporal proteome dynamics study reveals the molecular basis of induced phenotypic resistance in Mycobacterium smegmatis at sub-lethal rifampicin concentrations. PMID:28262820
Proteomic Analysis of Post-synaptic Density Fractions from Shank3 Mutant Mice Reveals Brain Region Specific Changes Relevant to Autism Spectrum Disorder. PMID:28261056
Simple discovery of bacterial biocatalysts from environmental samples through functional metaproteomics. PMID:28253936
Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803. PMID:28253354
Global Proteome Changes in Liver Tissue 6 Weeks after FOLFOX Treatment of Colorectal Cancer Liver Metastases. PMID:28248240
Label-free Proteomic Analysis of Exosomes Derived from Inducible Hepatitis B Virus-Replicating HepAD38 Cell Line. PMID:28242843
Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields. PMID:28234898
Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress. PMID:28232487
Label-Free Proteome Analysis of Plasma from Patients with Breast Cancer: Stage-Specific Protein Expression. PMID:28210565
Usp9x regulates Ets-1 ubiquitination and stability to control NRAS expression and tumorigenicity in melanoma. PMID:28198367
Global Characterization of Protein Secretion from Human Macrophages Following Non-canonical Caspase-4/5 Inflammasome Activation. PMID:28196878
Foxp3 drives oxidative phosphorylation and protection from lipotoxicity. PMID:28194435
Serine ADP-Ribosylation Depends on HPF1. PMID:28190768
Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation. PMID:28186488
Bicarbonate Induced Redox Proteome Changes in Arabidopsis Suspension Cells. PMID:28184230
Integrated analysis of proteome, phosphotyrosine-proteome, tyrosine-kinome, and tyrosine-phosphatome in acute myeloid leukemia. PMID:28176486
The PeptideAtlas of the Domestic Laying Hen. PMID:28166638
Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes. PMID:28158262
Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice. PMID:28141873
Building ProteomeTools based on a complete synthetic human proteome. PMID:28135259
A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate. PMID:28129334
A Golden Age for Working with Public Proteomics Data. PMID:28118949
Identifying components required for OMP biogenesis as novel targets for antiinfective drugs. PMID:28118090
CD5 molecule-like and transthyretin as putative biomarkers of chronic myeloid leukemia - an insight from the proteomic analysis of human plasma. PMID:28117336
Fibronectin-guided migration of carcinoma collectives. PMID:28102238
Global open data management in metabolomics. PMID:28092796
Comprehensive proteome analysis of lysosomes reveals the diverse function of macrophages in immune responses. PMID:28088779
Interactome disassembly during apoptosis occurs independent of caspase cleavage. PMID:28082348
The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes. PMID:28076790
Reduced Insulin/IGF-1 Signaling Restores the Dynamic Properties of Key Stress Granule Proteins during Aging. PMID:28076789
ATM induces MacroD2 nuclear export upon DNA damage. PMID:28069995
Integrated Cellular and Plasma Proteomics of Contrasting B-cell Cancers Reveals Common, Unique and Systemic Signatures. PMID:28062796
Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation. PMID:28058811
A Comprehensive Proteomic Survey of ABA-Induced Protein Phosphorylation in Rice (Oryza sativa L.). PMID:28054942
Dataset of the proteome of purified outer membrane vesicles from the human pathogen Aggregatibacter actinomycetemcomintans. PMID:28050585
Integrated Metabolomics and Proteomics Highlight Altered Nicotinamide- and Polyamine Pathways in Lung Adenocarcinoma. PMID:28049629
Proteome alterations associated with transformation of multiple myeloma to secondary plasma cell leukemia. PMID:28038447
Proteome data on the microbial microbiome of grasshopper feces. PMID:27995170
Quantitative cross-linking/mass spectrometry reveals subtle protein conformational changes. PMID:27976756
Mass Spectrometry Analysis of Lysine Posttranslational Modifications of Tau Protein from Alzheimer's Disease Brain. PMID:27975250
Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus. PMID:27928680
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. PMID:27924013
Data file of a deep proteome analysis of the prefrontal cortex in aged mice with progranulin deficiency or neuronal overexpression of progranulin. PMID:27921079
Exploring experimental cerebral malaria pathogenesis through the characterisation of host-derived plasma microparticle protein content. PMID:27917875
Targeted proteomics in urinary extracellular vesicles identifies biomarkers for diagnosis and prognosis of prostate cancer. PMID:27903962
SWATH-MS dataset of heat-shock treated Drosophila melanogaster embryos. PMID:27900350
jPOSTrepo: an international standard data repository for proteomes. PMID:27899654
moFF: a robust and automated approach to extract peptide ion intensities. PMID:27898063
Follicular fluid biomarkers for human in vitro fertilization outcome: Proof of principle. PMID:27895531
The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana. PMID:27895226
Proteomic profiling of NCI-60 extracellular vesicles uncovers common protein cargo and cancer type-specific biomarkers. PMID:27894104
Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences. PMID:27881428
Multi-omics Analysis of Serum Samples Demonstrates Reprogramming of Organ Functions Via Systemic Calcium Mobilization and Platelet Activation in Metastatic Melanoma. PMID:27879288
Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi. PMID:27874045
Data set of Aspergillus flavus induced alterations in tear proteome: Understanding the pathogen-induced host response to fungal infection. PMID:27872886
A systems study reveals concurrent activation of AMPK and mTOR by amino acids. PMID:27869123
Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry. PMID:27869121
The Physcomitrella patens Chloroplast Proteome Changes in Response to Protoplastation. PMID:27867392
Nicotine-induced protein expression profiling reveals mutually altered proteins across four human cell lines. PMID:27862958
SWATH-MS data of Drosophila melanogaster proteome dynamics during embryogenesis. PMID:27844044
Nano-liquid Chromatography-orbitrap MS-based Quantitative Proteomics Reveals Differences Between the Mechanisms of Action of Carnosic Acid and Carnosol in Colon Cancer Cells. PMID:27834734
A Role for Barley Calcium-Dependent Protein Kinase CPK2a in the Response to Drought. PMID:27826303
Asc1p/RACK1 Connects Ribosomes to Eukaryotic Phosphosignaling. PMID:27821475
RHO binding to FAM65A regulates Golgi reorientation during cell migration. PMID:27807006
Discovery of Age-Related Protein Folding Stability Differences in the Mouse Brain Proteome. PMID:27806573
Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival. PMID:27799870
Mycosins Are Required for the Stabilization of the ESX-1 and ESX-5 Type VII Secretion Membrane Complexes. PMID:27795391
The Influence of Sporulation Conditions on the Spore Coat Protein Composition of Bacillus subtilis Spores. PMID:27790212
Serine/threonine phosphatases and aquaporin-2 regulation in renal collecting duct. PMID:27784696
Increased Abundance of Proteins Involved in Resistance to Oxidative and Nitrosative Stress at the Last Stages of Growth and Development of Leishmania amazonensis Promastigotes Revealed by Proteome Analysis. PMID:27776144
Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. PMID:27775707
Novel non-canonical role of STAT1 in Natural Killer cell cytotoxicity. PMID:27757297
N-glycosylation proteome enrichment analysis in kidney reveals differences between diabetic mouse models. PMID:27757071
Thermophilic archaea activate butane via alkyl-coenzyme M formation. PMID:27749816
A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti. PMID:27748755
The Brain Proteome of the Ubiquitin Ligase Peli1 Knock-Out Mouse during Experimental Autoimmune Encephalomyelitis. PMID:27746629
Dinitrogenase-Driven Photobiological Hydrogen Production Combats Oxidative Stress in Cyanothece sp. Strain ATCC 51142. PMID:27742679
Immunogenic HLA-DR-Presented Self-Peptides Identified Directly from Clinical Samples of Synovial Tissue, Synovial Fluid, or Peripheral Blood in Patients with Rheumatoid Arthritis or Lyme Arthritis. PMID:27726376
Activation of the ATR kinase by the RPA-binding protein ETAA1. PMID:27723717
Oak protein profile alterations upon root colonization by an ectomycorrhizal fungus. PMID:27714470
Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational research. PMID:27713570
Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli. PMID:27713404
Chronic low-dose-rate ionising radiation affects the hippocampal phosphoproteome in the ApoE-/- Alzheimer's mouse model. PMID:27708245
The Salivary Protein Repertoire of the Polyphagous Spider Mite Tetranychus urticae: A Quest for Effectors. PMID:27703040
Isobaric Tags for Relative and Absolute Quantitation (iTRAQ)-Based Comparative Proteome Analysis of the Response of Ramie under Drought Stress. PMID:27689998
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome. PMID:27685651
Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study. PMID:27685442
The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression. PMID:27666543
Progressive muscle proteome changes in a clinically relevant pig model of Duchenne muscular dystrophy. PMID:27634466
FOXO/DAF-16 Activation Slows Down Turnover of the Majority of Proteins in C. elegans. PMID:27626670
Molecular Profiling of Phagocytic Immune Cells in Anopheles gambiae Reveals Integral Roles for Hemocytes in Mosquito Innate Immunity. PMID:27624304
A proteomic analysis of chondrogenic, osteogenic and tenogenic constructs from ageing mesenchymal stem cells. PMID:27624072
Dataset of differentially regulated proteins in HUVECs challenged with wild type and UGM1 mutant Aspergillus fumigatus strains. PMID:27622208
Identification and Characterization of MCM3 as a Kelch-like ECH-associated Protein 1 (KEAP1) Substrate. PMID:27621311
Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling. PMID:27615263
Fluoxetine Treatment Rescues Energy Metabolism Pathway Alterations in a Posttraumatic Stress Disorder Mouse Model. PMID:27606320
Towards a Proteomic Catalogue and Differential Annotation of Salivary Gland Proteins in Blood Fed Malaria Vector Anopheles culicifacies by Mass Spectrometry. PMID:27602567
Vegemite Beer: yeast extract spreads as nutrient supplements to promote fermentation. PMID:27602264
Data sources for in vivo molecular profiling of human phenotypes. PMID:27599755
On the privacy risks of sharing clinical proteomics data. PMID:27595046
Extensive dataset of boar seminal plasma proteome displaying putative reproductive functions of identified proteins. PMID:27583342
Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae. PMID:27580715
Combinatory annotation of cell membrane receptors and signalling pathways of Bombyx mori prothoracic glands. PMID:27576083
Systems-level effects of ectopic galectin-7 reconstitution in cervical cancer and its microenvironment. PMID:27558259
Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis. PMID:27555310
The endoplasmic reticulum and casein-containing vesicles contribute to milk fat globule membrane. PMID:27535430
Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases. PMID:27531744
A Skyline Plugin for Pathway-Centric Data Browsing. PMID:27530777
Multi-omics profile of the mouse dentate gyrus after kainic acid-induced status epilepticus. PMID:27529540
Quantitative Non-canonical Amino Acid Tagging (QuaNCAT) Proteomics Identifies Distinct Patterns of Protein Synthesis Rapidly Induced by Hypertrophic Agents in Cardiomyocytes, Revealing New Aspects of Metabolic Remodeling. PMID:27512079
Proteomic dataset of Paracentrotus lividus gonads of different sexes and at different maturation stages. PMID:27508229
A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large. PMID:27506200
Is Transthyretin a Regulator of Ubc9 SUMOylation? PMID:27501389
Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer. PMID:27499020
FYVE1/FREE1 Interacts with the PYL4 ABA Receptor and Mediates Its Delivery to the Vacuolar Degradation Pathway. PMID:27495812
The Exposed Proteomes of Brachyspira hyodysenteriae and B. pilosicoli. PMID:27493641
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets. PMID:27493588
The N-myristoylome of Trypanosoma cruzi. PMID:27492267
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. PMID:27490519
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. PMID:27487407
Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages. PMID:27486199
Comparative Proteome Analysis in Schizosaccharomyces pombe Identifies Metabolic Targets to Improve Protein Production and Secretion. PMID:27477394
Physiological and Proteomic Responses of Continuous Cultures of Microcystis aeruginosa PCC 7806 to Changes in Iron Bioavailability and Growth Rate. PMID:27474713
Cold acclimation is accompanied by complex responses of glycosylphosphatidylinositol (GPI)-anchored proteins in Arabidopsis. PMID:27471282
Integrative proteomic analysis reveals reprograming tumor necrosis factor signaling in epithelial mesenchymal transition. PMID:27461979
Determinants of Macromolecular Specificity from Proteomics-Derived Peptide Substrate Data. PMID:27455965
Tetramethylpyrazine Nitrone Improves Neurobehavioral Functions and Confers Neuroprotection on Rats with Traumatic Brain Injury. PMID:27452038
Structural elucidation of a novel mechanism for the bacteriophage-based inhibition of the RNA degradosome. PMID:27447594
Shotgun Proteomics of Tomato Fruits: Evaluation, Optimization and Validation of Sample Preparation Methods and Mass Spectrometric Parameters. PMID:27446192
Quantitative Proteomic and Transcriptomic Study on Autotetraploid Paulownia and Its Diploid Parent Reveal Key Metabolic Processes Associated with Paulownia Autotetraploidization. PMID:27446122
Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates. PMID:27437436
Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways. PMID:27418403
Ten Simple Rules for Taking Advantage of Git and GitHub. PMID:27415786
Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals. PMID:27408916
Assessing the impact of minimizing arginine conversion in fully defined SILAC culture medium in human embryonic stem cells. PMID:27392809
NEDDylation promotes stress granule assembly. PMID:27381497
Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera). PMID:27375629
Proteome data of whole saliva which are associated with development of oral mucositis in head and neck cancer patients undergoing radiotherapy. PMID:27358911
Phosphoproteomic analysis of Methanohalophilus portucalensis FDF1(T) identified the role of protein phosphorylation in methanogenesis and osmoregulation. PMID:27357474
Xanthine oxidoreductase mediates membrane docking of milk-fat droplets but is not essential for apocrine lipid secretion. PMID:27357166
Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster. PMID:27356881
Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver. PMID:27347675
A reconstituted cell-free assay for the evaluation of the intrinsic activity of purified human ribosomes. PMID:27336708
Prion Protein Deficiency Causes Diverse Proteome Shifts in Cell Models That Escape Detection in Brain Tissue. PMID:27327609
Critical Role of COI1-Dependent Jasmonate Pathway in AAL toxin induced PCD in Tomato Revealed by Comparative Proteomics. PMID:27324416
Activation of an Endoribonuclease by Non-intein Protein Splicing. PMID:27311716
Quantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant. PMID:27302889
Identification of RNA-binding Proteins in Macrophages by Interactome Capture. PMID:27281784
Autoimmune Regulator (AIRE) Is Expressed in Spermatogenic Cells, and It Altered the Expression of Several Nucleic-Acid-Binding and Cytoskeletal Proteins in Germ Cell 1 Spermatogonial (GC1-spg) Cells. PMID:27281783
NrdR Transcription Regulation: Global Proteome Analysis and Its Role in Escherichia coli Viability and Virulence. PMID:27275780
Quantitative proteomics reveals that distant recurrence-associated protein R-Ras and Transgelin predict post-surgical survival in patients with Stage III colorectal cancer. PMID:27270312
N-Myristoyltransferase Inhibition Induces ER-Stress, Cell Cycle Arrest, and Apoptosis in Cancer Cells. PMID:27267252
Resolution of Novel Pancreatic Ductal Adenocarcinoma Subtypes by Global Phosphotyrosine Profiling. PMID:27259358
Characterization and use of HapT1-derived homologous tumors as a preclinical model to evaluate therapeutic efficacy of drugs against pancreatic tumor desmoplasia. PMID:27259232
The proteome of the infectious bronchitis virus Beau-R virion. PMID:27257648
Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea. PMID:27255285
Annexin A5 is the Most Abundant Membrane-Associated Protein in Stereocilia but is Dispensable for Hair-Bundle Development and Function. PMID:27251877
Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling. PMID:27250206
Proteomic Analysis of the Spatio-temporal Based Molecular Kinetics of Acute Spinal Cord Injury Identifies a Time- and Segment-specific Window for Effective Tissue Repair. PMID:27250205
Proteomics Analysis with a Nano Random Forest Approach Reveals Novel Functional Interactions Regulated by SMC Complexes on Mitotic Chromosomes. PMID:27231315
Dinosaur: A Refined Open-Source Peptide MS Feature Detector. PMID:27224449
Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever. PMID:27217537
Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR. PMID:27216497
Commercial processed soy-based food product contains glycated and glycoxidated lunasin proteoforms. PMID:27189269
Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199. PMID:27186238
Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive. PMID:27182547
The Clathrin-dependent Spindle Proteome. PMID:27174698
Interleukin-6 Induced "Acute" Phenotypic Microenvironment Promotes Th1 Anti-Tumor Immunity in Cryo-Thermal Therapy Revealed By Shotgun and Parallel Reaction Monitoring Proteomics. PMID:27162549
SWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries. PMID:27161445
Interaction of tau with the RNA-Binding Protein TIA1 Regulates tau Pathophysiology and Toxicity. PMID:27160897
Proteome Profiling in Lung Injury after Hematopoietic Stem Cell Transplantation. PMID:27155584
Elucidation of tonic and activated B-cell receptor signaling in Burkitt's lymphoma provides insights into regulation of cell survival. PMID:27155012
Comparative Proteomic Analyses of Avirulent, Virulent, and Clinical Strains of Mycobacterium tuberculosis Identify Strain-specific Patterns. PMID:27151218
Differential Neuroproteomic and Systems Biology Analysis of Spinal Cord Injury. PMID:27150525
A Proteomics Approach to Identify New Putative Cardiac Intercalated Disk Proteins. PMID:27148881
Proteomic Analysis of a Poplar Cell Suspension Culture Suggests a Major Role of Protein S-Acylation in Diverse Cellular Processes. PMID:27148305
Feeding a Modified Fish Diet to Bottlenose Dolphins Leads to an Increase in Serum Adiponectin and Sphingolipids. PMID:27148164
An integrated proteomics approach shows synaptic plasticity changes in an APP/PS1 Alzheimer's mouse model. PMID:27144524
The Pathogenesis of the Demyelinating Form of Guillain-Barre Syndrome (GBS): Proteo-peptidomic and Immunological Profiling of Physiological Fluids. PMID:27143409
Analytic framework for peptidomics applied to large-scale neuropeptide identification. PMID:27142507
Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats. PMID:27135913
Identification of Candidate Cyclin-dependent kinase 1 (Cdk1) Substrates in Mitosis by Quantitative Phosphoproteomics. PMID:27134283
Slx5/Slx8 Promotes Replication Stress Tolerance by Facilitating Mitotic Progression. PMID:27134171
Data Independent Acquisition analysis in ProHits 4.0. PMID:27132685
Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics. PMID:27128991
Proteotranscriptomic Analysis Reveals Stage Specific Changes in the Molecular Landscape of Clear-Cell Renal Cell Carcinoma. PMID:27128972
Identification of Protease Specificity by Combining Proteome-Derived Peptide Libraries and Quantitative Proteomics. PMID:27122596
Comparative expression profiling reveals a role of the root apoplast in local phosphate response. PMID:27121119
Intestinal Microbiota and Microbial Metabolites Are Changed in a Pig Model Fed a High-Fat/Low-Fiber or a Low-Fat/High-Fiber Diet. PMID:27100182
Identification of Bovine Sperm Surface Proteins Involved in Carbohydrate-mediated Fertilization Interactions. PMID:27094474
Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry. PMID:27092112
Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini. PMID:27087653
The Effect of Chronic Methamphetamine Exposure on the Hippocampal and Olfactory Bulb Neuroproteomes of Rats. PMID:27082425
Comprehensively Characterizing the Thioredoxin Interactome In Vivo Highlights the Central Role Played by This Ubiquitous Oxidoreductase in Redox Control. PMID:27081212
Mass spectrometry analysis of adipose-derived stem cells reveals a significant effect of hypoxia on pathways regulating extracellular matrix. PMID:27075204
ExtraPEG: A Polyethylene Glycol-Based Method for Enrichment of Extracellular Vesicles. PMID:27068479
Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4+ T lymphocytes. PMID:27067055
N-Glycopeptide Profiling in Arabidopsis Inflorescence. PMID:27067053
Identification of Targets and Interaction Partners of Arginyl-tRNA Protein Transferase in the Moss Physcomitrella patens. PMID:27067052
Proteomic Identification of Putative MicroRNA394 Target Genes in Arabidopsis thaliana Identifies Major Latex Protein Family Members Critical for Normal Development. PMID:27067051
Comparative Proteomic Analysis Reveals Differential Root Proteins in Medicago sativa and Medicago truncatula in Response to Salt Stress. PMID:27066057
Unconventional endosome-like compartment and retromer complex in Toxoplasma gondii govern parasite integrity and host infection. PMID:27064065
Proteome rearrangements after auditory learning: high-resolution profiling of synapse-enriched protein fractions from mouse brain. PMID:27062398
Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium. PMID:27056914
Proteome-wide dataset supporting functional study of tyrosine kinases in breast cancer. PMID:27054188
Intact Cell MALDI-TOF MS on Sperm: A Molecular Test For Male Fertility Diagnosis. PMID:27044871
An Arginine Deprivation Response Pathway Is Induced in Leishmania during Macrophage Invasion. PMID:27043018
Investigation of proteome changes in osteoclastogenesis in low serum culture system using quantitative proteomics. PMID:27034619
Phospho-proteomic analyses of B-Raf protein complexes reveal new regulatory principles. PMID:27034005
Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence. PMID:27029354
Analysis of Drosophila melanogaster proteome dynamics during embryonic development by a combination of label-free proteomics approaches. PMID:27029218
Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes. PMID:27025927
Contribution of Human Fibroblasts and Endothelial Cells to the Hallmarks of Inflammation as Determined by Proteome Profiling. PMID:27025457
Quantitative proteomics links metabolic pathways to specific developmental stages of the plant-pathogenic oomycete Phytophthora capsici. PMID:27019332
Comparison of proteomic datasets from hypertrophic chondrocytes in response to ER stress. PMID:27014728
Allicin Induces Thiol Stress in Bacteria through S-Allylmercapto Modification of Protein Cysteines. PMID:27008862
Comparison of the Proteome of Adult and Cord Erythroid Cells, and Changes in the Proteome Following Reticulocyte Maturation. PMID:27006477
MaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuant. PMID:27003708
Proteomic Profiling of Mouse Liver following Acute Toxoplasma gondii Infection. PMID:27003162
Urine Proteome Biomarkers in Kidney Diseases. I. Limits, Perspectives, and First Focus on Normal Urine. PMID:26997865
Longitudinal quantification of the gingival crevicular fluid proteome during progression from gingivitis to periodontitis in a canine model. PMID:26990150
Transcriptomic and Proteomic Analysis of Arion vulgaris--Proteins for Probably Successful Survival Strategies? PMID:26986963
Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer's disease with cerebrovascular disease. PMID:26983404
A large dataset of protein dynamics in the mammalian heart proteome. PMID:26977904
Validation, optimisation, and application data in support of the development of a targeted selected ion monitoring assay for degraded cardiac troponin T. PMID:26977445
Axin cancer mutants form nanoaggregates to rewire the Wnt signaling network. PMID:26974125
Unique Insights in the Cervicovaginal Lactobacillus iners and L. crispatus Proteomes and Their Associations with Microbiota Dysbiosis. PMID:26963809
Phosphorylation of plastoglobular proteins in Arabidopsis thaliana. PMID:26962209
Data in support of the identification of neuronal and astrocyte proteins interacting with extracellularly applied oligomeric and fibrillar α-synuclein assemblies by mass spectrometry. PMID:26958642
Two overlapping two-component systems in Xanthomonas oryzae pv. oryzae contribute to full fitness in rice by regulating virulence factors expression. PMID:26957113
Characterization of various cell lines from different ampullary cancer subtypes and cancer associated fibroblast-mediated responses. PMID:26951071
Data for the identification of proteins and post-translational modifications of proteins associated to histones H3 and H4 in S. cerevisiae, using tandem affinity purification coupled with mass spectrometry. PMID:26949727
Data in support of proteomic analysis of pneumococcal pediatric clinical isolates to construct a protein array. PMID:26949725
A single dose of the γ-secretase inhibitor semagacestat alters the cerebrospinal fluid peptidome in humans. PMID:26948580
Proteomics study reveals that the dysregulation of focal adhesion and ribosome contribute to early pregnancy loss. PMID:26947931
Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans. PMID:26944343
Proteomics of Urinary Vesicles Links Plakins and Complement to Polycystic Kidney Disease. PMID:26940098
Cleaning out the Litterbox of Proteomic Scientists' Favorite Pet: Optimized Data Analysis Avoiding Trypsin Artifacts. PMID:26938934
Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies. PMID:26937473
Proteome identification of the silkworm middle silk gland. PMID:26937469
Characterization of a SILAC method for proteomic analysis of primary rat microglia. PMID:26936193
Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process. PMID:26935289
Adjuvant-induced Human Monocyte Secretome Profiles Reveal Adjuvant- and Age-specific Protein Signatures. PMID:26933193
An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client. PMID:26933192
Comparing isogenic strains of Beijing genotype Mycobacterium tuberculosis after acquisition of Isoniazid resistance: A proteomics approach. PMID:26929115
Integrative subcellular proteomic analysis allows accurate prediction of human disease-causing genes. PMID:26912414
Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity. PMID:26909372
Data detailing the platelet acetyl-lysine proteome. PMID:26904711
Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline. PMID:26902207
Chemoproteomic profiling of host and pathogen enzymes active in cholera. PMID:26900865
Sexual crossing of thermophilic fungus Myceliophthora heterothallica improved enzymatic degradation of sugar beet pulp. PMID:26900400
The UniProtKB guide to the human proteome. PMID:26896845
Dementia-linked amyloidosis is associated with brain protein deamidation as revealed by proteomic profiling of human brain tissues. PMID:26892330
Quantitative Proteomics Analysis Reveals the Min System of Escherichia coli Modulates Reversible Protein Association with the Inner Membrane. PMID:26889046
Global Protein Oxidation Profiling Suggests Efficient Mitochondrial Proteome Homeostasis During Aging. PMID:26884511
Illuminating structural proteins in viral "dark matter" with metaproteomics. PMID:26884177
Major remodeling of brain microvessels during neonatal period in the mouse: A proteomic and transcriptomic study. PMID:26873886
Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis. PMID:26871455
Identification of Cell Cycle Dependent Interaction Partners of the Septins by Quantitative Mass Spectrometry. PMID:26871441
Integrated Translatomics with Proteomics to Identify Novel Iron-Transporting Proteins in Streptococcus pneumoniae. PMID:26870030
Leaf apoplastic proteome composition in UV-B treated Arabidopsis thaliana mutants impaired in extracellular glutathione degradation. PMID:26862584
Data set from a comprehensive phosphoproteomic analysis of rice variety IRBB5 in response to bacterial blight. PMID:26862573
Time-course investigation of Phytophthora infestans infection of potato leaf from three cultivars by quantitative proteomics. PMID:26862565
Understanding the Heat Shock Response in the Sea Cucumber Apostichopus japonicus, Using iTRAQ-Based Proteomics. PMID:26861288
Systematic Survey of Serine Hydrolase Activity in Mycobacterium tuberculosis Defines Changes Associated with Persistence. PMID:26853625
Reassessing ecdysteroidogenic cells from the cell membrane receptors' perspective. PMID:26847502
Comparative Phosphoproteomics Analysis of VEGF and Angiopoietin-1 Signaling Reveals ZO-1 as a Critical Regulator of Endothelial Cell Proliferation. PMID:26846344
PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis. PMID:26839287
Proteome Dynamics: Tissue Variation in the Kinetics of Proteostasis in Intact Animals. PMID:26839000
Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases. PMID:26824392
Methylthioadenosine (MTA) Regulates Liver Cells Proteome and Methylproteome: Implications in Liver Biology and Disease. PMID:26819315
Simultaneous Metabolite, Protein, Lipid Extraction (SIMPLEX): A Combinatorial Multimolecular Omics Approach for Systems Biology. PMID:26814187
Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts. PMID:26811357
Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors. PMID:26804907
Exosomes Secreted by Apoptosis-Resistant Acute Myeloid Leukemia (AML) Blasts Harbor Regulatory Network Proteins Potentially Involved in Antagonism of Apoptosis. PMID:26801919
Developmental alcohol exposure leads to a persistent change on astrocyte secretome. PMID:26801685
The Pluripotency Factor NANOG Binds to GLI Proteins and Represses Hedgehog-mediated Transcription. PMID:26797124
Data in support of proteome analysis of gynophores and early swelling pods of peanut (Arachis hypogaea L.). PMID:26793750
Milk Bottom-Up Proteomics: Method Optimization. PMID:26793233
Phosphoproteomics Profiling of Tobacco Mature Pollen and Pollen Activated in vitro. PMID:26792808
Quantitative phosphoproteomics reveals genistein as a modulator of cell cycle and DNA damage response pathways in triple-negative breast cancer cells. PMID:26783066
Life span extension by targeting a link between metabolism and histone acetylation in Drosophila. PMID:26781291
Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase. PMID:26769563
Proteomic Analysis of Epithelial to Mesenchymal Transition (EMT) Reveals Cross-talk between SNAIL and HDAC1 Proteins in Breast Cancer Cells. PMID:26764010
Analysis of the Protein Kinase A-Regulated Proteome of Cryptococcus neoformans Identifies a Role for the Ubiquitin-Proteasome Pathway in Capsule Formation. PMID:26758180
Systematic evaluation of data-independent acquisition for sensitive and reproducible proteomics-a prototype design for a single injection assay. PMID:26757066
A draft map of the mouse pluripotent stem cell spatial proteome. PMID:26754106
FIH Regulates Cellular Metabolism through Hydroxylation of the Deubiquitinase OTUB1. PMID:26752685
Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding. PMID:26751078
Quantitative Profiling of the Activity of Protein Lysine Methyltransferase SMYD2 Using SILAC-Based Proteomics. PMID:26750096
Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations. PMID:26746581
Quantitative Phosphoproteomics Analysis of ERBB3/ERBB4 Signaling. PMID:26745281
Implementation of meiosis prophase I programme requires a conserved retinoid-independent stabilizer of meiotic transcripts. PMID:26742488
DCAF1 controls T-cell function via p53-dependent and -independent mechanisms. PMID:26728942
Protein turnover during in vitro tissue engineering. PMID:26724458
Glycoproteomic Approach Identifies KRAS as a Positive Regulator of CREG1 in Non-small Cell Lung Cancer Cells. PMID:26722374
Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains. PMID:26711008
Dog Tear Film Proteome In-Depth Analysis. PMID:26701646
Reactive Oxygen Species (ROS)-Activated ATM-Dependent Phosphorylation of Cytoplasmic Substrates Identified by Large-Scale Phosphoproteomics Screen. PMID:26699800
Large Scale Mass Spectrometry-based Identifications of Enzyme-mediated Protein Methylation Are Subject to High False Discovery Rates. PMID:26699799
The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine. PMID:26699206
Haem-activated promiscuous targeting of artemisinin in Plasmodium falciparum. PMID:26694030
Genomic and Proteomic Studies on the Mode of Action of Oxaboroles against the African Trypanosome. PMID:26684831
The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast. PMID:26682798
Germline variant FGFR4 p.G388R exposes a membrane-proximal STAT3 binding site. PMID:26675719
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. PMID:26673895
Integrative Network Analysis Combined with Quantitative Phosphoproteomics Reveals Transforming Growth Factor-beta Receptor type-2 (TGFBR2) as a Novel Regulator of Glioblastoma Stem Cell Properties. PMID:26670566
Common errors in mass spectrometry-based analysis of post-translational modifications. PMID:26667783
Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome. PMID:26658305
Integrated analysis of global proteome, phosphoproteome, and glycoproteome enables complementary interpretation of disease-related protein networks. PMID:26657352
Lowering Endogenous Cathepsin D Abundance Results in Reactive Oxygen Species Accumulation and Cell Senescence. PMID:26657266
The Proteomic Profile of Deleted in Breast Cancer 1 (DBC1) Interactions Points to a Multifaceted Regulation of Gene Expression. PMID:26657080
Discovery of a nucleocytoplasmic O-mannose glycoproteome in yeast. PMID:26644575
Proteome Profiling of the Rhodobacter capsulatus Molybdenum Response Reveals a Role of IscN in Nitrogen Fixation by Fe-Nitrogenase. PMID:26644433
Repairing oxidized proteins in the bacterial envelope using respiratory chain electrons. PMID:26641313
The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells. PMID:26641092
Proteomic Analysis Reveals Key Proteins and Phosphoproteins upon Seed Germination of Wheat (Triticum aestivum L.). PMID:26635843
Secretome identification of immune cell factors mediating metastatic cell homing. PMID:26634905
Isolation, N-glycosylations and Function of a Hyaluronidase-Like Enzyme from the Venom of the Spider Cupiennius salei. PMID:26630650
Data standards can boost metabolomics research, and if there is a will, there is a way. PMID:26612985
An 8-Month Systems Toxicology Inhalation/Cessation Study in Apoe-/- Mice to Investigate Cardiovascular and Respiratory Exposure Effects of a Candidate Modified Risk Tobacco Product, THS 2.2, Compared With Conventional Cigarettes. PMID:26609137
Global Profiling of Huntingtin-associated protein E (HYPE)-Mediated AMPylation through a Chemical Proteomic Approach. PMID:26604261
Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach. PMID:26599979
Osteoblast-released Matrix Vesicles, Regulation of Activity and Composition by Sulfated and Non-sulfated Glycosaminoglycans. PMID:26598647
Conserved mRNA-binding proteomes in eukaryotic organisms. PMID:26595419
Calsequestrins in skeletal and cardiac muscle from adult Danio rerio. PMID:26585961
Metabolic Interplay between the Asian Citrus Psyllid and Its Profftella Symbiont: An Achilles' Heel of the Citrus Greening Insect Vector. PMID:26580079
Changes in the nuclear proteome of developing wheat (Triticum aestivum L.) grain. PMID:26579155
CD36 Is a Matrix Metalloproteinase-9 Substrate That Stimulates Neutrophil Apoptosis and Removal During Cardiac Remodeling. PMID:26578544
Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars. PMID:26573226
Deconstruction of O-glycosylation--GalNAc-T isoforms direct distinct subsets of the O-glycoproteome. PMID:26566661
Cross-linking immunoprecipitation-MS (xIP-MS): Topological Analysis of Chromatin-associated Protein Complexes Using Single Affinity Purification. PMID:26560067
Yeast Interspecies Comparative Proteomics Reveals Divergence in Expression Profiles and Provides Insights into Proteome Resource Allocation and Evolutionary Roles of Gene Duplication. PMID:26560065
Immunocapture strategies in translational proteomics. PMID:26558424
miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth. PMID:26555894
On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development. PMID:26555057
Global Analysis of mRNA, Translation, and Protein Localization: Local Translation Is a Key Regulator of Cell Protrusions. PMID:26555054
Cdc42-dependent actin dynamics controls maturation and secretory activity of dendritic cells. PMID:26553928
Micro-proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm level. PMID:26552604
Global Reprogramming of Host SUMOylation during Influenza Virus Infection. PMID:26549460
Testing and Validation of Computational Methods for Mass Spectrometry. PMID:26549429
Novel N-terminal and Lysine Methyltransferases That Target Translation Elongation Factor 1A in Yeast and Human. PMID:26545399
PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets. PMID:26545397
Characterization of the porcine synovial fluid proteome and a comparison to the plasma proteome. PMID:26543887
A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma. PMID:26539827
Myc coordinates transcription and translation to enhance transformation and suppress invasiveness. PMID:26538417
Comprehensive Cross-Linking Mass Spectrometry Reveals Parallel Orientation and Flexible Conformations of Plant HOP2-MND1. PMID:26535604
Identification of Epstein-Barr Virus Replication Proteins in Burkitt's Lymphoma Cells. PMID:26529022
Beyond plant defense: insights on the potential of salicylic and methylsalicylic acid to contain growth of the phytopathogen Botrytis cinerea. PMID:26528317
2016 update of the PRIDE database and its related tools. PMID:26527722
Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naïve midgut. PMID:26510422
Proteomic profiling of nuclear fractions from native renal inner medullary collecting duct cells. PMID:26508704
Sperm competition risk drives plasticity in seminal fluid composition. PMID:26507392
Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout Strains. PMID:26503604
Myeloma cells can corrupt senescent mesenchymal stromal cells and impair their anti-tumor activity. PMID:26498687
Effects of low temperature on tropical and temperate isolates of marine Synechococcus. PMID:26495993
Proteomics Analysis of Dorsal Striatum Reveals Changes in Synaptosomal Proteins following Methamphetamine Self-Administration in Rats. PMID:26484527
Rosuvastatin Alters the Proteome of High Density Lipoproteins: Generation of alpha-1-antitrypsin Enriched Particles with Anti-inflammatory Properties. PMID:26483418
Tissue matrix arrays for high-throughput screening and systems analysis of cell function. PMID:26480475
Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions. PMID:26475864
In-Depth, Label-Free Analysis of the Erythrocyte Cytoplasmic Proteome in Diamond Blackfan Anemia Identifies a Unique Inflammatory Signature. PMID:26474164
Characterization and quantification of proteins secreted by single human embryos prior to implantation. PMID:26471863
Pathology Tissue-quantitative Mass Spectrometry Analysis to Profile Histone Post-translational Modification Patterns in Patient Samples. PMID:26463340
Quantitative phosphoproteomics reveals new roles for the protein phosphatase PP6 in mitotic cells. PMID:26462736
Evidence of Highly Conserved β-Crystallin Disulfidome that Can be Mimicked by In Vitro Oxidation in Age-related Human Cataract and Glutathione Depleted Mouse Lens. PMID:26453637
Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A. PMID:26453029
Exploring the potential of public proteomics data. PMID:26449181
Tumor-selective proteotoxicity of verteporfin inhibits colon cancer progression independently of YAP1. PMID:26443705
Global analysis of lysine acetylation in strawberry leaves. PMID:26442052
Uncovering Hidden Layers of Cell Cycle Regulation through Integrative Multi-omic Analysis. PMID:26439921
A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos. PMID:26439676
Genetically and Phenotypically Distinct Pseudomonas aeruginosa Cystic Fibrosis Isolates Share a Core Proteomic Signature. PMID:26431321
Discovery and Validation of Predictive Biomarkers of Survival for Non-small Cell Lung Cancer Patients Undergoing Radical Radiotherapy: Two Proteins With Predictive Value. PMID:26425690
Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells. PMID:26421188
Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery. PMID:26419670
Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR). PMID:26419333
Matrix metalloproteinase-9-dependent mechanisms of reduced contractility and increased stiffness in the aging heart. PMID:26415707
Positive Mode LC-MS/MS Analysis of Chondroitin Sulfate Modified Glycopeptides Derived from Light and Heavy Chains of The Human Inter-α-Trypsin Inhibitor Complex. PMID:26407992
Serum Glycoprotein Biomarker Discovery and Qualification Pipeline Reveals Novel Diagnostic Biomarker Candidates for Esophageal Adenocarcinoma. PMID:26404905
Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae. PMID:26399295
A peptide identification-free, genome sequence-independent shotgun proteomics workflow for strain-level bacterial differentiation. PMID:26395646
Proteomic Analyses for the Global S-Nitrosylated Proteins in the Brain Tissues of Different Human Prion Diseases. PMID:26392294
Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology. PMID:26385339
Proteomics of Aggregatibacter actinomycetemcomitans Outer Membrane Vesicles. PMID:26381655
Identification of B6T173 (ZmPrx35) as the prevailing peroxidase in highly insect-resistant maize (Zea mays, p84C3) kernels by activity-directed purification. PMID:26379694
Redefining the Breast Cancer Exosome Proteome by Tandem Mass Tag Quantitative Proteomics and Multivariate Cluster Analysis. PMID:26378940
The Arabidopsis Chloroplast Stromal N-Terminome: Complexities of Amino-Terminal Protein Maturation and Stability. PMID:26371235
Post-transcriptional Mechanisms Contribute Little to Phenotypic Variation in Snake Venoms. PMID:26358130
Phosphorylation of the Scc2 cohesin deposition complex subunit regulates chromosome condensation through cohesin integrity. PMID:26354421
NADH-Cytochrome b5 Reductase 3 Promotes Colonization and Metastasis Formation and Is a Prognostic Marker of Disease-Free and Overall Survival in Estrogen Receptor-Negative Breast Cancer. PMID:26351264
Identification of potential drug targets for tuberous sclerosis complex by synthetic screens combining CRISPR-based knockouts with RNAi. PMID:26350902
Cervicovaginal microbiome dysbiosis is associated with proteome changes related to alterations of the cervicovaginal mucosal barrier. PMID:26349657
Delivery of Alginate Scaffold Releasing Two Trophic Factors for Spinal Cord Injury Repair. PMID:26348665
Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency. PMID:26343910
Proteomic Analysis of One-carbon Metabolism-related Marker in Liver of Rat Offspring. PMID:26342040
Comparative "-omics" in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors. PMID:26335586
Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study. PMID:26330543
Qualitative ubiquitome unveils the potential significances of protein lysine ubiquitination in hyphal growth of Aspergillus nidulans. PMID:26328806
The Proteome of Native Adult Müller Glial Cells From Murine Retina. PMID:26324419
α-synuclein assemblies sequester neuronal α3-Na+/K+-ATPase and impair Na+ gradient. PMID:26323479
Data from proteomic characterization of the role of Snail1 in murine mesenchymal stem cells and 3T3-L1 fibroblasts differentiation. PMID:26322327
2-DE proteomics analysis of drought treated seedlings of Quercus ilex supports a root active strategy for metabolic adaptation in response to water shortage. PMID:26322068
Interacting Network of the Gap Junction (GJ) Protein Connexin43 (Cx43) is Modulated by Ischemia and Reperfusion in the Heart. PMID:26316108
Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization. PMID:26314379
Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles. PMID:26311899
Mass spectrometry identification of age-associated proteins from the malaria mosquitoes Anopheles gambiae s.s. and Anopheles stephensi. PMID:26306320
Data set for the proteomic inventory and quantitative analysis of chicken eggshell matrix proteins during the primary events of eggshell mineralization and the active growth phase of calcification. PMID:26306314
Comparative analysis of cerebrospinal fluid from the meningo-encephalitic stage of T. b. gambiense and rhodesiense sleeping sickness patients using TMT quantitative proteomics. PMID:26306311
Proteomic Evidence for Components of Spider Silk Synthesis from Black Widow Silk Glands and Fibers. PMID:26302244
Proteomic and metabolic traits of grape exocarp to explain different anthocyanin concentrations of the cultivars. PMID:26300900
The Prion Protein Controls Polysialylation of Neural Cell Adhesion Molecule 1 during Cellular Morphogenesis. PMID:26288071
Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling. PMID:26278961
Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation. PMID:26275208
Proteomic Profiling of Detergent Resistant Membranes (Lipid Rafts) of Prostasomes. PMID:26272980
The Human Tau Interactome: Binding to the Ribonucleoproteome, and Impaired Binding of the Proline-to-Leucine Mutant at Position 301 (P301L) to Chaperones and the Proteasome. PMID:26269332
ISG15 counteracts Listeria monocytogenes infection. PMID:26259872
Lysine acetyltransfer supports platelet function. PMID:26256950
Integrated Proteomic and Glycoproteomic Analyses of Prostate Cancer Cells Reveal Glycoprotein Alteration in Protein Abundance and Glycosylation. PMID:26256267
Post-Transcriptional Coordination of the Arabidopsis Iron Deficiency Response is Partially Dependent on the E3 Ligases RING DOMAIN LIGASE1 (RGLG1) and RING DOMAIN LIGASE2 (RGLG2). PMID:26253232
Environmental Interactions and Epistasis Are Revealed in the Proteomic Responses to Complex Stimuli. PMID:26247773
Separating myoblast differentiation from muscle cell fusion using IGF-I and the p38 MAP kinase inhibitor SB202190. PMID:26246429
Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol. PMID:26245374
A Systems Level Analysis of Vasopressin-mediated Signaling Networks in Kidney Distal Convoluted Tubule Cells. PMID:26239621
Proteomics analysis reveals differentially activated pathways that operate in peanut gynophores at different developmental stages. PMID:26239120
Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes. PMID:26230114
Proteomic Analysis Reveals Distinct Metabolic Differences Between Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Macrophage Colony Stimulating Factor (M-CSF) Grown Macrophages Derived from Murine Bone Marrow Cells. PMID:26229149
A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies. PMID:26224020
MStern Blotting-High Throughput Polyvinylidene Fluoride (PVDF) Membrane-Based Proteomic Sample Preparation for 96-Well Plates. PMID:26223766
Myristoylation profiling in human cells and zebrafish. PMID:26217820
Redox proteomic analysis of the gastrocnemius muscle from adult and old mice. PMID:26217813
Quantitative proteome changes in Arabidopsis thaliana suspension-cultured cells in response to plant natriuretic peptides. PMID:26217812
Quantitative proteomics of rat and human pancreatic beta cells. PMID:26217750
Characterization of the gila monster (Heloderma suspectum suspectum) venom proteome. PMID:26217734
Data set for the mass spectrometry based exoproteome analysis of Aspergillus flavus isolates. PMID:26217704
Data set for the proteomic inventory and quantitative analysis of chicken uterine fluid during eggshell biomineralization. PMID:26217689
A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae. PMID:26215614
Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry. PMID:26202522
Characterization of Regenerative Phenotype of Unrestricted Somatic Stem Cells (USSC) from Human Umbilical Cord Blood (hUCB) by Functional Secretome Analysis. PMID:26183719
p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses. PMID:26183718
A Pneumococcal Protein Array as a Platform to Discover Serodiagnostic Antigens Against Infection. PMID:26183717
Regulation of microtubule dynamics by DIAPH3 influences amoeboid tumor cell mechanics and sensitivity to taxanes. PMID:26179371
Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair. PMID:26174933
The Goblet Cell Protein Clca1 (Alias mClca3 or Gob-5) Is Not Required for Intestinal Mucus Synthesis, Structure and Barrier Function in Naive or DSS-Challenged Mice. PMID:26162072
Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification. PMID:26155816
Proteomic profile response of Paracoccidioides lutzii to the antifungal argentilactone. PMID:26150808
Quantification of HER2 by Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded (FFPE) Breast Cancer Tissues. PMID:26149442
Proteomic analysis of integrin-associated complexes from mesenchymal stem cells. PMID:26147903
Label-free Quantitative Proteomics of Mouse Cerebrospinal Fluid Detects β-Site APP Cleaving Enzyme (BACE1) Protease Substrates In Vivo. PMID:26139848
State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet. PMID:26139527
Cytological and proteomic analyses of horsetail (Equisetum arvense L.) spore germination. PMID:26136760
iTRAQ-Based Quantitative Proteomic Analysis of the Initiation of Head Regeneration in Planarians. PMID:26131905
Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes. PMID:26125681
Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation. PMID:26121405
Serum- and Glucocorticoid-Inducible Kinase-1 (SGK-1) Plays a Role in Membrane Trafficking in Caenorhabditis elegans. PMID:26115433
A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight. PMID:26112675
Honey Bee Infecting Lake Sinai Viruses. PMID:26110586
Fasting, but Not Aging, Dramatically Alters the Redox Status of Cysteine Residues on Proteins in Drosophila melanogaster. PMID:26095360
New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph. PMID:26092463
Characterization of the Tyrosine Kinase-Regulated Proteome in Breast Cancer by Combined use of RNA interference (RNAi) and Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC) Quantitative Proteomics. PMID:26089344
Proteomic Identification of Cysteine Cathepsin Substrates Shed from the Surface of Cancer Cells. PMID:26081835
System-wide identification of wild-type SUMO-2 conjugation sites. PMID:26073453
Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation. PMID:26038114
The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard. PMID:26037908
Proteomic analysis of cellular soluble proteins from human bronchial smooth muscle cells by combining nondenaturing micro 2DE and quantitative LC-MS/MS. 2. Similarity search between protein maps for the analysis of protein complexes. PMID:26031785
Phosphoproteomic Analysis of Cell-Based Resistance to BRAF Inhibitor Therapy in Melanoma. PMID:26029660
Identifying the ionically bound cell wall and intracellular glycoside hydrolases in late growth stage Arabidopsis stems: implications for the genetic engineering of bioenergy crops. PMID:26029221
From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics. PMID:26002791
Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies. PMID:25993694
A Combined Omics Approach to Generate the Surface Atlas of Human Naive CD4+ T Cells during Early T-Cell Receptor Activation. PMID:25991687
Differential protein expression profiles of cyst fluid from papillary thyroid carcinoma and benign thyroid lesions. PMID:25978681
A repository of assays to quantify 10,000 human proteins by SWATH-MS. PMID:25977788
The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation. PMID:25973932
Proteomic study of different culture medium serum volume fractions on RANKL-dependent RAW264.7 cells differentiating into osteoclasts. PMID:25969670
Cell Surface Proteomics Provides Insight into Stage-Specific Remodeling of the Host-Parasite Interface in Trypanosoma brucei. PMID:25963835
Protein and Peptide Composition of Male Accessory Glands of Apis mellifera Drones Investigated by Mass Spectrometry. PMID:25955586
Current strategies and findings in clinically relevant post-translational modification-specific proteomics. PMID:25955281
Proteomic analysis of cellular soluble proteins from human bronchial smooth muscle cells by combining nondenaturing micro 2DE and quantitative LC-MS/MS. 1. Preparation of more than 4000 native protein maps. PMID:25931155
Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri. PMID:25930153
iTRAQ-based quantitative subcellular proteomic analysis of Avibirnavirus-infected cells. PMID:25929241
Effect of Embryo Vitrification on Rabbit Foetal Placenta Proteome during Pregnancy. PMID:25915775
An improved protocol to study the plant cell wall proteome. PMID:25914713
ms-data-core-api: an open-source, metadata-oriented library for computational proteomics. PMID:25910694
The genomes of two key bumblebee species with primitive eusocial organization. PMID:25908251
Introducing the PRIDE Archive RESTful web services. PMID:25904633
Combined Proteomics and Transcriptomics Identifies Carboxypeptidase B1 and Nuclear Factor κB (NF-κB) Associated Proteins as Putative Biomarkers of Metastasis in Low Grade Breast Cancer. PMID:25903579
A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day. PMID:25887394
Proteomics of methyl jasmonate induced defense response in maize leaves against Asian corn borer. PMID:25885025
Improved protease digestion conditions for membrane protein detection. PMID:25884272
Representation of selected-reaction monitoring data in the mzQuantML data standard. PMID:25884107
The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation. PMID:25879418
Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae. PMID:25878099
A protein deep sequencing evaluation of metastatic melanoma tissues. PMID:25874936
Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann-Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis. PMID:25873482
A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum. PMID:25867681
Comparative proteome analysis of multi-layer cocoon of the silkworm, Bombyx mori. PMID:25860555
Multidimensional proteomics for cell biology. PMID:25857810
A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells. PMID:25850435
Online Peptide fractionation using a multiphasic microfluidic liquid chromatography chip improves reproducibility and detection limits for quantitation in discovery and targeted proteomics. PMID:25850434
Growth Cone Localization of the mRNA Encoding the Chromatin Regulator HMGN5 Modulates Neurite Outgrowth. PMID:25825524
Multifunctional reagents for quantitative proteome-wide analysis of protein modification in human cells and dynamic profiling of protein lipidation during vertebrate development. PMID:25807930
No evidence of enemy release in pathogen and microbial communities of common wasps (Vespula vulgaris) in their native and introduced range. PMID:25798856
Mo-CBP3, an antifungal chitin-binding protein from Moringa oleifera seeds, is a member of the 2S albumin family. PMID:25789746
Identification of a biomarker in cerebrospinal fluid for neuronopathic forms of Gaucher disease. PMID:25775479
Phosphate Limitation Induces Drastic Physiological Changes, Virulence-Related Gene Expression, and Secondary Metabolite Production in Pseudovibrio sp. Strain FO-BEG1. PMID:25769826
Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells. PMID:25769101
Feasibility of protein turnover studies in prototroph Saccharomyces cerevisiae strains. PMID:25767917
A search for protein biomarkers links olfactory signal transduction to social immunity. PMID:25757461
Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs). PMID:25755299
Large-Scale Targeted Proteomics Using Internal Standard Triggered-Parallel Reaction Monitoring (IS-PRM). PMID:25755295
Acetylation site specificities of lysine deacetylase inhibitors in human cells. PMID:25751058
Analysis of the Candida albicans Phosphoproteome. PMID:25750214
Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots. PMID:25728785
Development of data representation standards by the human proteome organization proteomics standards initiative. PMID:25726569
Proteomic analysis of the soybean symbiosome identifies new symbiotic proteins. PMID:25724908
SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites. PMID:25722289
Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1. PMID:25720772
Proteomic identification of early salicylate- and flg22-responsive redox-sensitive proteins in Arabidopsis. PMID:25720653
DYn-2 Based Identification of Arabidopsis Sulfenomes. PMID:25693797
Visualization of proteomics data using R and bioconductor. PMID:25690415
Proteomic analyses uncover a new function and mode of action for mouse homolog of Diaphanous 2 (mDia2). PMID:25682332
Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria. PMID:25678603
Defining the phospho-adhesome through the phosphoproteomic analysis of integrin signalling. PMID:25677187
Building high-quality assay libraries for targeted analysis of SWATH MS data. PMID:25675208
A metaproteomics approach to elucidate host and pathogen protein expression during catheter-associated urinary tract infections (CAUTIs). PMID:25673765
The functional interactome of PYHIN immune regulators reveals IFIX is a sensor of viral DNA. PMID:25665578
Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana. PMID:25662467
Quantification of extracellular matrix proteins from a rat lung scaffold to provide a molecular readout for tissue engineering. PMID:25660013
Identification of synaptosomal proteins binding to monomeric and oligomeric α-synuclein. PMID:25659148
Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines. PMID:25656970
Integrating transcriptomics and proteomics to show that tanshinone IIA suppresses cell growth by blocking glucose metabolism in gastric cancer cells. PMID:25652794
Quantitative variability of 342 plasma proteins in a human twin population. PMID:25652787
FOXP1 potentiates Wnt/β-catenin signaling in diffuse large B cell lymphoma. PMID:25650440
Total proteome analysis identifies migration defects as a major pathogenetic factor in immunoglobulin heavy chain variable region (IGHV)-unmutated chronic lymphocytic leukemia. PMID:25645933
Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants. PMID:25635268
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics. PMID:25631240
BDNF stimulation of protein synthesis in cortical neurons requires the MAP kinase-interacting kinase MNK1. PMID:25609615
Identification of protein complexes that bind to histone H3 combinatorial modifications using super-SILAC and weighted correlation network analysis. PMID:25605797
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics. PMID:25599550
Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules. PMID:25586196
PeptideShaker enables reanalysis of MS-derived proteomics data sets. PMID:25574629
Rb and FZR1/Cdh1 determine CDK4/6-cyclin D requirement in C. elegans and human cancer cells. PMID:25562820
Deciphering preferential interactions within supramolecular protein complexes: the proteasome case. PMID:25561571
An enhanced in vivo stable isotope labeling by amino acids in cell culture (SILAC) model for quantification of drug metabolism enzymes. PMID:25561501
Proteomics analysis of rough endoplasmic reticulum in pancreatic beta cells. PMID:25546123
A public repository for mass spectrometry imaging data. PMID:25542566
A THEMIS:SHP1 complex promotes T-cell survival. PMID:25535246
Yeast PP4 interacts with ATR homolog Ddc2-Mec1 and regulates checkpoint signaling. PMID:25533186
Proteomics of muscle chronological ageing in post-menopausal women. PMID:25532418
Microtubule-dependent modulation of adhesion complex composition. PMID:25526367
Sirtuin 4 is a lipoamidase regulating pyruvate dehydrogenase complex activity. PMID:25525879
The composition of the gut microbiota shapes the colon mucus barrier. PMID:25525071
Spaceflight induces specific alterations in the proteomes of Arabidopsis. PMID:25517942
A comparative multidimensional LC-MS proteomic analysis reveals mechanisms for furan aldehyde detoxification in Thermoanaerobacter pseudethanolicus 39E. PMID:25506391
Plant natriuretic peptides induce proteins diagnostic for an adaptive response to stress. PMID:25505478
A proteomic analysis reveals that Snail regulates the expression of the nuclear orphan receptor Nuclear Receptor Subfamily 2 Group F Member 6 (Nr2f6) and interleukin 17 (IL-17) to inhibit adipocyte differentiation. PMID:25505127
An Insight into the proteome of Crithidia fasciculata choanomastigotes as a comparative approach to axenic growth, peanut lectin agglutination and differentiation of Leishmania spp. promastigotes. PMID:25503511
Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast. PMID:25492886
CRISPR-Cas9-based knockout of the prion protein and its effect on the proteome. PMID:25490046
Computational phosphoproteomics: from identification to localization. PMID:25475148
Tomato nuclear proteome reveals the involvement of specific E2 ubiquitin-conjugating enzymes in fruit ripening. PMID:25464976
Preprocessing significantly improves the peptide/protein identification sensitivity of high-resolution isobarically labeled tandem mass spectrometry data. PMID:25435543
The UCSC Genome Browser database: 2015 update. PMID:25428374
Comparative phosphoproteomic analysis of mammalian glomeruli reveals conserved podocin C-terminal phosphorylation as a determinant of slit diaphragm complex architecture. PMID:25420462
Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites. PMID:25405079
A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode. PMID:25398855
Hepatic proteome analysis of Atlantic salmon (Salmo salar) after exposure to environmental concentrations of human pharmaceuticals. PMID:25394398
PIP4kγ is a substrate for mTORC1 that maintains basal mTORC1 signaling during starvation. PMID:25372051
Sustained mitogen-activated protein kinase activation reprograms defense metabolism and phosphoprotein profile in Arabidopsis thaliana. PMID:25368622
Quantitative phosphoproteomic analysis of IL-33-mediated signaling. PMID:25367039
Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS). PMID:25363814
Proteogenomics: concepts, applications and computational strategies. PMID:25357241
Proteomics of skin proteins in psoriasis: from discovery and verification in a mouse model to confirmation in humans. PMID:25351201
Identifying novel biomarkers through data mining-a realistic scenario? PMID:25347964
Rsp5/Nedd4 is the main ubiquitin ligase that targets cytosolic misfolded proteins following heat stress. PMID:25344756
Exploring the human plasma proteome for humoral mediators of remote ischemic preconditioning--a word of caution. PMID:25333471
Substrate trapping proteomics reveals targets of the βTrCP2/FBXW11 ubiquitin ligase. PMID:25332235
The Hsp90-dependent proteome is conserved and enriched for hub proteins with high levels of protein-protein connectivity. PMID:25316598
Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome. PMID:25307156
The peptide microarray "ChloroPhos1.0" identifies new phosphorylation targets of plastid casein kinase II (pCKII) in Arabidopsis thaliana. PMID:25295873
Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors. PMID:25290099
Utilising proteomic approaches to understand oncogenic human herpesviruses (Review). PMID:25279171
Analysis of differential expression patterns of mRNA and protein during cold-acclimation and de-acclimation in Arabidopsis. PMID:25277243
Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation. PMID:25273840
Label-free LC-MSe in tissue and serum reveals protein networks underlying differences between benign and malignant serous ovarian tumors. PMID:25265318
Species identification of archaeological skin objects from Danish bogs: comparison between mass spectrometry-based peptide sequencing and microscopy-based methods. PMID:25260035
SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs. PMID:25257309
A transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803. PMID:25239498
Identification of long-lived proteins retained in cells undergoing repeated asymmetric divisions. PMID:25228775
Uncovering global SUMOylation signaling networks in a site-specific manner. PMID:25218447
Differential cysteine labeling and global label-free proteomics reveals an altered metabolic state in skeletal muscle aging. PMID:25181601
A pipeline for determining protein-protein interactions and proximities in the cellular milieu. PMID:25172955
A normative study of the synovial fluid proteome from healthy porcine knee joints. PMID:25160569
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685
Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome. PMID:25152083
A highly efficient tumor-infiltrating MDSC differentiation system for discovery of anti-neoplastic targets, which circumvents the need for tumor establishment in mice. PMID:25151659
Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells. PMID:25136337
Proteomic analysis of the Plasmodium male gamete reveals the key role for glycolysis in flagellar motility. PMID:25124718
Label-free protein quantification for plant Golgi protein localization and abundance. PMID:25122472
The bromodomain of Gcn5 regulates site specificity of lysine acetylation on histone H3. PMID:25106422
A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions. PMID:25104842
Environmental enrichment alters protein expression as well as the proteomic response to cocaine in rat nucleus accumbens. PMID:25100957
Proteomic analysis of human vitreous humor. PMID:25097467
Sumoylation controls host anti-bacterial response to the gut invasive pathogen Shigella flexneri. PMID:25097252
Proteomic analysis of the human cyclin-dependent kinase family reveals a novel CDK5 complex involved in cell growth and migration. PMID:25096995
A standardized framing for reporting protein identifications in mzIdentML 1.2. PMID:25092112
The LKB1-salt-inducible kinase pathway functions as a key gluconeogenic suppressor in the liver. PMID:25088745
Identification of candidate substrates for the Golgi Tul1 E3 ligase using quantitative diGly proteomics in yeast. PMID:25078903
Quantitative proteomic analysis reveals posttranslational responses to aneuploidy in yeast. PMID:25073701
Hippocampal extracellular matrix levels and stochasticity in synaptic protein expression increase with age and are associated with age-dependent cognitive decline. PMID:25044018
Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosis. PMID:25038065
Quantitative proteomic analysis reveals metabolic alterations, calcium dysregulation, and increased expression of extracellular matrix proteins in laminin α2 chain-deficient muscle. PMID:24994560
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience. PMID:24980485
Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database. PMID:24954049
Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver. PMID:24946870
Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics. PMID:24939129
Interactions of proteins with biogenic iron oxyhydroxides and a new culturing technique to increase biomass yields of neutrophilic, iron-oxidizing bacteria. PMID:24910632
Mass-spectrometry-based draft of the human proteome. PMID:24870543
Proteomic identification of monoclonal antibodies from serum. PMID:24684310
State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project. PMID:24261998
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 PubMed citations: 978.

978 articles citing: The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

Plasmodium falciparum S-Adenosylmethionine Synthetase Is Essential for Parasite Survival through a Complex Interaction Network with Cytoplasmic and Nuclear Proteins. PMID:35889137
Exploring COVID-19 pathogenesis on command-line: A bioinformatics pipeline for handling and integrating omics data. PMID:35871895
Neuropilin 1 and its inhibitory ligand mini-tryptophanyl-tRNA synthetase inversely regulate VE-cadherin turnover and vascular permeability. PMID:35858913
Platelet proteome reveals features of cell death, antiviral response and viral replication in covid-19. PMID:35842415
Morphological and Proteomic Analyses of Soybean Seedling Interaction Mechanism Affected by Fiber Crosslinked with Zinc-Oxide Nanoparticles. PMID:35806419
Engineering of ultraID, a compact and hyperactive enzyme for proximity-dependent biotinylation in living cells. PMID:35788163
Cancer-associated fibroblasts require proline synthesis by PYCR1 for the deposition of pro-tumorigenic extracellular matrix. PMID:35760868
Mass spectrometry-based draft of the mouse proteome. PMID:35710609
Morphological, Biochemical, and Proteomic Analyses to Understand the Promotive Effects of Plant-Derived Smoke Solution on Wheat Growth under Flooding Stress. PMID:35684281
The phospho-docking protein 14-3-3 regulates microtubule-associated proteins in oocytes including the chromosomal passenger Borealin. PMID:35666772
GDAP1 loss of function inhibits the mitochondrial pyruvate dehydrogenase complex by altering the actin cytoskeleton. PMID:35662277
A novel nanobody as therapeutics target for EGFR-positive colorectal cancer therapy: exploring the effects of the nanobody on SW480 cells using proteomics approach. PMID:35578244
Identification of Phosphorylation and Other Post-Translational Modifications in the Central C4C5 Domains of Murine Cardiac Myosin Binding Protein C. PMID:35573219
Proteomic, Biochemical, and Morphological Analyses of the Effect of Silver Nanoparticles Mixed with Organic and Inorganic Chemicals on Wheat Growth. PMID:35563885
Utilizing Quantitative Proteomics to Identify Species-Specific Protein Therapeutic Targets for the Treatment of Leishmaniasis. PMID:35474788
Loss of UCP1 function augments recruitment of futile lipid cycling for thermogenesis in murine brown fat. PMID:35470094
Carry-over effects of dry period heat stress on the mammary gland proteome and phosphoproteome in the subsequent lactation of dairy cows. PMID:35459770
TcdB of Clostridioides difficile Mediates RAS-Dependent Necrosis in Epithelial Cells. PMID:35457076
Absolute Proteome Quantification in the Gas-Fermenting Acetogen Clostridium autoethanogenum. PMID:35384696
Proteomic profiling of postmortem prefrontal cortex tissue of suicide completers. PMID:35383147
Profilin is involved in G1 to S phase progression and mitotic spindle orientation during Leishmania donovani cell division cycle. PMID:35316283
Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions. PMID:35275789
Aberrant tryptophan metabolism in stromal cells is associated with mesenteric fibrosis in small intestinal neuroendocrine tumors. PMID:35275095
A Continuous Assay Set to Screen and Characterize Novel Protein N-Acetyltransferases Unveils Rice General Control Non-repressible 5-Related N-Acetyltransferase2 Activity. PMID:35273627
Pathway Analysis for Cancer Research and Precision Oncology Applications. PMID:35230687
Formylation: an undesirable modification on glycopeptides and glycans during storage in formic acid solution. PMID:35229171
Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach. PMID:35186042
Selective multi-kinase inhibition sensitizes mesenchymal pancreatic cancer to immune checkpoint blockade by remodeling the tumor microenvironment. PMID:35122074
Mechanism of Bloom syndrome complex assembly required for double Holliday junction dissolution and genome stability. PMID:35115399
Sequence-specific RNA recognition by an RGG motif connects U1 and U2 snRNP for spliceosome assembly. PMID:35101980
Vps501, a novel vacuolar SNX-BAR protein cooperates with the SEA complex to regulate TORC1 signaling. PMID:35098628
Measurement of deaminated cytosine adducts in DNA using a novel hybrid thymine DNA glycosylase. PMID:35085553
Differences in Cellular Clearing Mechanisms of Aggregates of Two Subtypes of HLA-B27. PMID:35082784
A Dynamic and Combinatorial Histone Code Drives Malaria Parasite Asexual and Sexual Development. PMID:35051657
Multiomic analysis identifies CPT1A as a potential therapeutic target in platinum-refractory, high-grade serous ovarian cancer. PMID:35028612
Quantifying phosphorylation dynamics in primary neuronal cultures using LC-MS/MS. PMID:35005645
CD105+CD90+CD13+ identifies a clonogenic subset of adventitial lung fibroblasts. PMID:34952905
R-loop proximity proteomics identifies a role of DDX41 in transcription-associated genomic instability. PMID:34916496
Integrative analysis of the salt stress response in cyanobacteria. PMID:34906211
The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice. PMID:34887460
Investigation of the Proteomes of the Truffles Tuber albidum pico, T. aestivum, T. indicum, T. magnatum, and T. melanosporum. PMID:34884803
Precision N-glycoproteomics reveals elevated LacdiNAc as a novel signature of intrahepatic cholangiocarcinoma. PMID:34855283
Temporal and Site-Specific ADP-Ribosylation Dynamics upon Different Genotoxic Stresses. PMID:34831150
Alternative Pathway for 3-Cyanoalanine Assimilation in Pseudomonas pseudoalcaligenes CECT5344 under Noncyanotrophic Conditions. PMID:34730416
Subcellular Proteomics to Understand Promotive Effect of Plant-Derived Smoke Solution on Soybean Root. PMID:34698284
Mutations and variants of ONECUT1 in diabetes. PMID:34663987
Chemical proteomic profiling reveals protein interactors of the alarmones diadenosine triphosphate and tetraphosphate. PMID:34608152
PLK1-dependent phosphorylation restrains EBNA2 activity and lymphomagenesis in EBV-infected mice. PMID:34605140
Nitrous oxide respiring bacteria in biogas digestates for reduced agricultural emissions. PMID:34489539
Effect of pH on the denitrification proteome of the soil bacterium Paracoccus denitrificans PD1222. PMID:34446760
Proteomic and Biochemical Analyses of the Mechanism of Tolerance in Mutant Soybean Responding to Flooding Stress. PMID:34445752
Dynamic bi-directional phosphorylation events associated with the reciprocal regulation of synapses during homeostatic up- and down-scaling. PMID:34433048
How to Achieve Therapeutic Response in Erlotinib-Resistant Head and Neck Squamous Cell Carcinoma? New Insights from Stable Isotope Labeling with Amino Acids in Cell Culture-Based Quantitative Tyrosine Phosphoproteomics. PMID:34432535
Investigating the Chemolithoautotrophic and Formate Metabolism of Nitrospira moscoviensis by Constraint-Based Metabolic Modeling and 13C-Tracer Analysis. PMID:34402644
A novel cell-cycle-regulated interaction of the Bloom syndrome helicase BLM with Mcm6 controls replication-linked processes. PMID:34370039
StrucGP: de novo structural sequencing of site-specific N-glycan on glycoproteins using a modularization strategy. PMID:34341581
MicroRNA-494 Regulates Endoplasmic Reticulum Stress in Endothelial Cells. PMID:34322482
Proteomics reveals disturbances in the immune response and energy metabolism of monocytes from patients with septic shock. PMID:34312428
Structure-function specialisation of the interfascicular matrix in the human achilles tendon. PMID:34271169
Integrated Multi-Omics Analysis of Mechanisms Underlying Yeast Ethanol Tolerance. PMID:34236875
Alteration of protein expression and spliceosome pathway activity during Barrett's carcinogenesis. PMID:34227026
ATR regulates neuronal activity by modulating presynaptic firing. PMID:34210973
The RNA Atlas expands the catalog of human non-coding RNAs. PMID:34140680
Time-Dependent Analysis of Paenarthrobacter nicotinovorans pAO1 Nicotine-Related Proteome. PMID:34124447
Quantitative proteomics identifies the core proteome of exosomes with syntenin-1 as the highest abundant protein and a putative universal biomarker. PMID:34108659
Site-specific glycoproteomic analysis revealing increased core-fucosylation on FOLR1 enhances folate uptake capacity of HCC cells to promote EMT. PMID:34093861
Normothermic Ex-vivo Kidney Perfusion in a Porcine Auto-Transplantation Model Preserves the Expression of Key Mitochondrial Proteins: An Unbiased Proteomics Analysis. PMID:34033948
Ovalbumin Antigen-Specific Activation of Human T Cell Receptor Closely Resembles Soluble Antibody Stimulation as Revealed by BOOST Phosphotyrosine Proteomics. PMID:34018748
Amino Acid Analog Induces Stress Response in Marine Synechococcus. PMID:33990310
The RNA landscape of the human placenta in health and disease. PMID:33976128
Girding the loins? Direct evidence of the use of a medieval English parchment birthing girdle from biomolecular analysis. PMID:33959357
Proteogenomic Workflow Reveals Molecular Phenotypes Related to Breast Cancer Mammographic Appearance. PMID:33855848
Proteomics Profiling of Neuron-Derived Small Extracellular Vesicles from Human Plasma: Enabling Single-Subject Analysis. PMID:33799461
Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq). PMID:33793824
Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis. PMID:33785790
A wide-ranging Pseudomonas aeruginosa PeptideAtlas build: A useful proteomic resource for a versatile pathogen. PMID:33757883
Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics. PMID:33749263
Cooperative treatment effectiveness of ATR and HSP90 inhibition in Ewing's sarcoma cells. PMID:33743824
Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance. PMID:33727228
Changes of the Proteome and Acetylome during Transition into the Stationary Phase in the Organohalide-Respiring Dehalococcoides mccartyi Strain CBDB1. PMID:33673241
Characterization of 150 Wheat Cultivars by LC-MS-Based Label-Free Quantitative Proteomics Unravels Possibilities to Design Wheat Better for Baking Quality and Human Health. PMID:33668233
Complex-dependent histone acetyltransferase activity of KAT8 determines its role in transcription and cellular homeostasis. PMID:33657400
Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years. PMID:33640492
Glycosyltransferase POMGNT1 deficiency strengthens N-cadherin-mediated cell-cell adhesion. PMID:33610554
Investigating an increase in Florida manatee mortalities using a proteomic approach. PMID:33608577
Paleoproteomic profiling of organic residues on prehistoric pottery from Malta. PMID:33582869
Peptidomics-Driven Strategy Reveals Peptides and Predicted Proteases Associated With Oral Cancer Prognosis. PMID:33578082
Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean. PMID:33398100
Improving the Identification and Coverage of Plant Transmembrane Proteins in Medicago Using Bottom-Up Proteomics. PMID:33391307
The axonal sorting activity of pseudorabies virus Us9 protein depends on the state of neuronal maturation. PMID:33370419
Caspase-3 Cleaves Extracellular Vesicle Proteins During Auditory Brainstem Development. PMID:33281555
Quantitative Changes in the Mitochondrial Proteome of Cerebellar Synaptosomes From Preclinical Cystatin B-Deficient Mice. PMID:33281550
Proteomics analysis of serum small extracellular vesicles for the longitudinal study of a glioblastoma multiforme mouse model. PMID:33235327
Fecal host biomarkers predicting severity of Clostridioides difficile infection. PMID:33232301
Quantitative comparison of the biomass-degrading enzyme repertoires of five filamentous fungi. PMID:33219291
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut. PMID:33188211
Quantitative Interactomics of Lck-TurboID in Living Human T Cells Unveils T Cell Receptor Stimulation-Induced Proximal Lck Interactors. PMID:33185455
Proteomics reveals that quinoa bioester promotes replenishing effects in epidermal tissue. PMID:33173110
Phosphatase of Regenerating Liver-1 Selectively Times Circadian Behavior in Darkness via Function in PDF Neurons and Dephosphorylation of TIMELESS. PMID:33157022
Synthetase of the methyl donor S-adenosylmethionine from nitrogen-fixing α-rhizobia can bind functionally diverse RNA species. PMID:33043803
Genome-wide postnatal changes in immunity following fetal inflammatory response. PMID:33006196
Perfluorooctanesulfonic acid (PFOS) administration shifts the hepatic proteome and augments dietary outcomes related to hepatic steatosis in mice. PMID:32979393
Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice. PMID:32977500
The conversion of formate into purines stimulates mTORC1 leading to CAD-dependent activation of pyrimidine synthesis. PMID:32974014
Bi-allelic pathogenic variants in NDUFC2 cause early-onset Leigh syndrome and stalled biogenesis of complex I. PMID:32969598
Extracellular Matrix Injury of Kidney Allografts in Antibody-Mediated Rejection: A Proteomics Study. PMID:32900843
Dynamic remodelling of the human host cell proteome and phosphoproteome upon enterovirus infection. PMID:32859902
Marker Identification of the Grade of Dysplasia of Intraductal Papillary Mucinous Neoplasm in Pancreatic Cyst Fluid by Quantitative Proteomic Profiling. PMID:32842508
Respiratory Effects of Exposure to Aerosol From the Candidate Modified-Risk Tobacco Product THS 2.2 in an 18-Month Systems Toxicology Study With A/J Mice. PMID:32780831
Plasmodium berghei LAPs form an extended protein complex that facilitates crystalloid targeting and biogenesis. PMID:32736136
PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells. PMID:32726622
A Lactococcal Phage Protein Promotes Viral Propagation and Alters the Host Proteomic Response During Infection. PMID:32722163
Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus. PMID:32708483
Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona. PMID:32699280
Plasma proteomic profiling suggests an association between antigen driven clonal B cell expansion and ME/CFS. PMID:32692761
Inhibition of the integrated stress response by viral proteins that block p-eIF2-eIF2B association. PMID:32690955
The Bartonella autotransporter BafA activates the host VEGF pathway to drive angiogenesis. PMID:32678094
Site-specific ubiquitination of pathogenic huntingtin attenuates its deleterious effects. PMID:32675242
MAP4K Interactome Reveals STRN4 as a Key STRIPAK Complex Component in Hippo Pathway Regulation. PMID:32640226
Phosphorylation on Ser-359 of the α2 subunit in GABA type A receptors down-regulates their density at inhibitory synapses. PMID:32620552
Proteomics pinpoints alterations in grade I meningiomas of male versus female patients. PMID:32587372
Atomic-resolution mapping of transcription factor-DNA interactions by femtosecond laser crosslinking and mass spectrometry. PMID:32541649
Tombusvirus p19 Captures RNase III-Cleaved Double-Stranded RNAs Formed by Overlapping Sense and Antisense Transcripts in Escherichia coli. PMID:32518184
Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection. PMID:32514074
Use of Multiple Ion Fragmentation Methods to Identify Protein Cross-Links and Facilitate Comparison of Data Interpretation Algorithms. PMID:32496805
Targeting RET Kinase in Neuroendocrine Prostate Cancer. PMID:32461304
The Birth of Bio-data Science: Trends, Expectations, and Applications. PMID:32428604
Heterogeneities of Site-Specific N-Glycosylation in HCC Tumors With Low and High AFP Concentrations. PMID:32426269
Multi-omics systems toxicology study of mouse lung assessing the effects of aerosols from two heat-not-burn tobacco products and cigarette smoke. PMID:32419906
Complex Analysis of Retroposed Genes' Contribution to Human Genome, Proteome and Transcriptome. PMID:32408516
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Quantitative Proteomics of All 14 Renal Tubule Segments in Rat. PMID:32358040
Serine 319 phosphorylation is necessary and sufficient to induce a Cx37 conformation that leads to arrested cell cycling. PMID:32350069
Unbiased Identification of the Liposome Protein Corona using Photoaffinity-based Chemoproteomics. PMID:32342003
Cell-Surface Proteomics Identifies Differences in Signaling and Adhesion Protein Expression between Naive and Primed Human Pluripotent Stem Cells. PMID:32302559
Proteome dynamics during homeostatic scaling in cultured neurons. PMID:32238265
The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark. PMID:32218948
In utero and lactational 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) exposure exacerbates urinary dysfunction in hormone-treated C57BL/6J mice through a non-malignant mechanism involving proteomic changes in the prostate that differ from those elicited by testosterone and estradiol. PMID:32211455
Identification of Novel Biomarkers in Pancreatic Tumor Tissue to Predict Response to Neoadjuvant Chemotherapy. PMID:32195182
How paired PSII-LHCII supercomplexes mediate the stacking of plant thylakoid membranes unveiled by structural mass-spectrometry. PMID:32170184
Transferrin Receptor Is a Specific Ferroptosis Marker. PMID:32160546
Filling the Gaps - A Call for Comprehensive Analysis of Extracellular Matrix of the Glial Scar in Region- and Injury-Specific Contexts. PMID:32153367
C9orf72 arginine-rich dipeptide repeat proteins disrupt karyopherin-mediated nuclear import. PMID:32119645
Heat and Pressure Resistance in Escherichia coli Relates to Protein Folding and Aggregation. PMID:32117137
Spatiotemporal Proteomics Reveals the Molecular Consequences of Hormone Treatment in a Mouse Model of Lower Urinary Tract Dysfunction. PMID:32108482
A High Resolution Mass Spectrometry Study Reveals the Potential of Disulfide Formation in Human Mitochondrial Voltage-Dependent Anion Selective Channel Isoforms (hVDACs). PMID:32098132
Comparative Analysis of the Effect of Inorganic and Organic Chemicals with Silver Nanoparticles on Soybean under Flooding Stress. PMID:32075105
Escherichia coli Can Adapt Its Protein Translocation Machinery for Enhanced Periplasmic Recombinant Protein Production. PMID:32064253
Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network. PMID:32053352
Cell Cycle Profiling Reveals Protein Oscillation, Phosphorylation, and Localization Dynamics. PMID:32051232
Quantitative site- and structure-specific N-glycoproteomics characterization of differential N-glycosylation in MCF-7/ADR cancer stem cells. PMID:32042278
Role of the Dihydrodipicolinate Synthase DapA1 on Iron Homeostasis During Cyanide Assimilation by the Alkaliphilic Bacterium Pseudomonas pseudoalcaligenes CECT5344. PMID:32038602
RNA decay during gammaherpesvirus infection reduces RNA polymerase II occupancy of host promoters but spares viral promoters. PMID:32032393
TNF receptor-associated factor 6 interacts with ALS-linked misfolded superoxide dismutase 1 and promotes aggregation. PMID:32029478
A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS. PMID:32027860
Proteomic Analysis of Brain Region and Sex-Specific Synaptic Protein Expression in the Adult Mouse Brain. PMID:32012899
Novel Insights Into N-Glycan Fucosylation and Core Xylosylation in C. reinhardtii. PMID:32010168
Protein Turnover in Epithelial Cells and Mucus along the Gastrointestinal Tract Is Coordinated by the Spatial Location and Microbiota. PMID:31995731
Proteomic Analysis of Irradiation with Millimeter Waves on Soybean Growth under Flooding Conditions. PMID:31940953
Proteomic analysis of intracellular protein corona of nanoparticles elucidates nano-trafficking network and nano-bio interactions. PMID:31938061
Quantitative live cell imaging reveals influenza virus manipulation of Rab11A transport through reduced dynein association. PMID:31911620
Measuring glycolytic flux in single yeast cells with an orthogonal synthetic biosensor. PMID:31885198
Degradation of Polycomb Repressive Complex 2 with an EED-Targeted Bivalent Chemical Degrader. PMID:31831267
Organising the cell cycle in the absence of transcriptional control: Dynamic phosphorylation co-ordinates the Trypanosoma brucei cell cycle post-transcriptionally. PMID:31830130
Dynamic proteome profiling of human pluripotent stem cell-derived pancreatic progenitors. PMID:31828876
MAP2K1 is a potential therapeutic target in erlotinib resistant head and neck squamous cell carcinoma. PMID:31827134
The MATH-BTB Protein TaMAB2 Accumulates in Ubiquitin-Containing Foci and Interacts With the Translation Initiation Machinery in Arabidopsis. PMID:31824527
Tumor tissue hnRNP M and HSP 90α as potential predictors of disease-specific mortality in patients with early-stage cutaneous head and neck melanoma: A proteomics-based study. PMID:31803364
A selective BCL-XL PROTAC degrader achieves safe and potent antitumor activity. PMID:31792461
Mucin adsorbed by E. coli can affect neutrophil activation in vitro. PMID:31785127
Elucidation of WW domain ligand binding specificities in the Hippo pathway reveals STXBP4 as YAP inhibitor. PMID:31782549
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. PMID:31780431
Epigenetic reader complexes of the human malaria parasite, Plasmodium falciparum. PMID:31728527
Direct regulation of Chk1 protein stability by E3 ubiquitin ligase HUWE1. PMID:31713291
NPM and NPM-MLF1 interact with chromatin remodeling complexes and influence their recruitment to specific genes. PMID:31675375
Dataset of Nematostella vectensis Hsp70 isoform interactomes upon heat shock. PMID:31673583
Tracking genome-editing and associated molecular perturbations by SWATH mass spectrometry. PMID:31645615
A framework for TRIM21-mediated protein depletion in early mouse embryos: recapitulation of Tead4 null phenotype over three days. PMID:31638890
Modulation of Proteome Profile in AβPP/PS1 Mice Hippocampus, Medial Prefrontal Cortex, and Striatum by Palm Oil Derived Tocotrienol-Rich Fraction. PMID:31594216
Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. PMID:31535972
An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo. PMID:31527703
Endo-lysosomal proteins and ubiquitin CSF concentrations in Alzheimer's and Parkinson's disease. PMID:31521194
Human cardiac myosin-binding protein C restricts actin structural dynamics in a cooperative and phosphorylation-sensitive manner. PMID:31519753
N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping. PMID:31516400
The Formation of a Camalexin Biosynthetic Metabolon. PMID:31511315
Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation. PMID:31484429
GIGANTEA recruits the UBP12 and UBP13 deubiquitylases to regulate accumulation of the ZTL photoreceptor complex. PMID:31434902
Data from quantitative serum proteomic analysis after laparoscopic gastric plication. PMID:31431912
The rise and fall of major royal jelly proteins during a honeybee (Apis mellifera) workers' life. PMID:31410279
Coxsackievirus B Persistence Modifies the Proteome and the Secretome of Pancreatic Ductal Cells. PMID:31404834
In vivo proteomics identifies the competence regulon and AliB oligopeptide transporter as pathogenic factors in pneumococcal meningitis. PMID:31356624
Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors. PMID:31320637
Mechanical stress impairs pheromone signaling via Pkc1-mediated regulation of the MAPK scaffold Ste5. PMID:31315942
Regulation of the unfolded protein response through ATF4 and FAM129A in prostate cancer. PMID:31312022
Protein corona formed on silver nanoparticles in blood plasma is highly selective and resistant to physicochemical changes of the solution. PMID:31304020
The Signal Transduction Protein PII Controls Ammonium, Nitrate and Urea Uptake in Cyanobacteria. PMID:31293555
Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results. PMID:31260318
Identification of a Multiplex Biomarker Panel for Hypertrophic Cardiomyopathy Using Quantitative Proteomics and Machine Learning. PMID:31243064
SeQuery: an interactive graph database for visualizing the GPCR superfamily. PMID:31236561
MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed Proteins. PMID:31235637
Dynamic remodeling of the interactomes of Nematostella vectensis Hsp70 isoforms under heat shock. PMID:31233900
Proteomics Analysis of Extracellular Matrix Remodeling During Zebrafish Heart Regeneration. PMID:31221719
The heparin-binding proteome in normal pancreas and murine experimental acute pancreatitis. PMID:31211768
Protein profile of different cellular fractions from Mycobacterium tuberculosis strains after exposure to isoniazid. PMID:31193076
Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production. PMID:31171938
Cytoplasmic sequestration of the RhoA effector mDiaphanous1 by Prohibitin2 promotes muscle differentiation. PMID:31165762
Mesenchymal stromal cell activation by breast cancer secretomes in bioengineered 3D microenvironments. PMID:31160380
Sucrose-induced Receptor Kinase 1 is Modulated by an Interacting Kinase with Short Extracellular Domain. PMID:31147492
The Systemin Signaling Cascade As Derived from Time Course Analyses of the Systemin-responsive Phosphoproteome. PMID:31138643
The human brain somatostatin interactome: SST binds selectively to P-type family ATPases. PMID:31136617
In-depth proteomic characterization of Schistosoma haematobium: Towards the development of new tools for elimination. PMID:31091291
Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery. PMID:31075098
'Palaeoshellomics' reveals the use of freshwater mother-of-pearl in prehistory. PMID:31060688
Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics. PMID:31040226
Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma. PMID:31039795
Reduced insulin action in muscle of high fat diet rats over the diurnal cycle is not associated with defective insulin signaling. PMID:31029696
The Proteome of Tetrasphaera elongata is adapted to Changing Conditions in Wastewater Treatment Plants. PMID:31027192
Insulin Induces Microtubule Stabilization and Regulates the Microtubule Plus-end Tracking Protein Network in Adipocytes. PMID:31018989
Profiling of Seed Proteome in Pea (Pisum sativum L.) Lines Characterized with High and Low Responsivity to Combined Inoculation with Nodule Bacteria and Arbuscular Mycorrhizal Fungi. PMID:31018578
Phosphoregulation of the oncogenic protein regulator of cytokinesis 1 (PRC1) by the atypical CDK16/CCNY complex. PMID:30992425
Serine 25 phosphorylation inhibits RIPK1 kinase-dependent cell death in models of infection and inflammation. PMID:30988283
The unique photosynthetic apparatus of Pinaceae: analysis of photosynthetic complexes in Picea abies. PMID:30938447
Hypoxia-induced Changes in SUMO Conjugation Affect Transcriptional Regulation Under Low Oxygen. PMID:30926672
Protein acetylation on 2-isopropylmalate synthase from Thermus thermophilus HB27. PMID:30919057
Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium "Thiodictyon syntrophicum". PMID:30891015
Dynamic analysis of proteomic alterations in response to N-linked glycosylation inhibition in a drug-resistant ovarian carcinoma cell line. PMID:30884134
Molecular Responses of Maize Shoot to a Plant Derived Smoke Solution. PMID:30875914
Virulence Factors Produced by Staphylococcus aureus Biofilms Have a Moonlighting Function Contributing to Biofilm Integrity. PMID:30850421
Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation. PMID:30837475
Comparative analysis of differentially secreted proteins in serum-free and serum-containing media by using BONCAT and pulsed SILAC. PMID:30816242
Proteomic analysis of cholera toxin adjuvant-stimulated human monocytes identifies Thrombospondin-1 and Integrin-β1 as strongly upregulated molecules involved in adjuvant activity. PMID:30808871
The impact of the glucagon-like peptide 1 receptor agonist liraglutide on the streptozotocin-induced diabetic mouse kidney proteome. PMID:30806030
An Advanced Strategy for Comprehensive Profiling of ADP-ribosylation Sites Using Mass Spectrometry-based Proteomics. PMID:30798302
Application of Data-Independent Acquisition Approach to Study the Proteome Change from Early to Later Phases of Tomato Pathogenesis Responses. PMID:30781546
Phosphorylation-Dependent Intra-Domain Interaction of the Cx37 Carboxyl-Terminus Controls Cell Survival. PMID:30736283
Hypoxic cancer-associated fibroblasts increase NCBP2-AS2/HIAR to promote endothelial sprouting through enhanced VEGF signaling. PMID:30723174
The antiviral protein viperin regulates chondrogenic differentiation via CXCL10 protein secretion. PMID:30718282
ARGLU1 is a transcriptional coactivator and splicing regulator important for stress hormone signaling and development. PMID:30698747
Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction. PMID:30682706
Investigating Lactococcus lactis MG1363 Response to Phage p2 Infection at the Proteome Level. PMID:30679258
Polypropylene mesh implantation for hernia repair causes myeloid cell-driven persistent inflammation. PMID:30674727
Leveraging Multilayered "Omics" Data for Atopic Dermatitis: A Road Map to Precision Medicine. PMID:30631320
Global Phosphoproteomic Analysis Reveals the Defense and Response Mechanisms of Jatropha Curcas Seedling under Chilling Stress. PMID:30626061
Challenges in Clinical Metaproteomics Highlighted by the Analysis of Acute Leukemia Patients with Gut Colonization by Multidrug-Resistant Enterobacteriaceae. PMID:30626002
A Mass Spectrometry-Based Profiling of Interactomes of Viral DDB1- and Cullin Ubiquitin Ligase-Binding Proteins Reveals NF-κB Inhibitory Activity of the HIV-2-Encoded Vpx. PMID:30619335
C9orf72 arginine-rich dipeptide proteins interact with ribosomal proteins in vivo to induce a toxic translational arrest that is rescued by eIF1A. PMID:30604225
Proteomic Analysis of the Human Anterior Pituitary Gland. PMID:30571610
Combined Targeted Analysis of Metabolites and Proteins in Tear Fluid With Regard to Clinical Applications. PMID:30564511
Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate. PMID:30545941
Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. PMID:30542078
High-throughput Identification of FLT3 Wild-type and Mutant Kinase Substrate Preferences and Application to Design of Sensitive In Vitro Kinase Assay Substrates. PMID:30541869
Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes. PMID:30505945
Tissue-Based Mapping of the Fathead Minnow (Pimephales promelas) Transcriptome and Proteome. PMID:30459712
Diverse Protein Profiles in CNS Myeloid Cells and CNS Tissue From Lipopolysaccharide- and Vehicle-Injected APPSWE/PS1ΔE9 Transgenic Mice Implicate Cathepsin Z in Alzheimer's Disease. PMID:30459560
Novel protein signatures suggest progression to muscular invasiveness in bladder cancer. PMID:30419021
A rice Serine/Threonine receptor-like kinase regulates arbuscular mycorrhizal symbiosis at the peri-arbuscular membrane. PMID:30410018
From Single Level Analysis to Multi-Omics Integrative Approaches: A Powerful Strategy towards the Precision Oncology. PMID:30373182
Nuclear lactate dehydrogenase A senses ROS to produce α-hydroxybutyrate for HPV-induced cervical tumor growth. PMID:30356100
C-terminal processing of GlyGly-CTERM containing proteins by rhombosortase in Vibrio cholerae. PMID:30352106
Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion. PMID:30346791
Quantitative proteomics analysis identifies MUC1 as an effect sensor of EGFR inhibition. PMID:30305724
Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants. PMID:30300945
Enhanced validation of antibodies for research applications. PMID:30297845
ProteomeGenerator: A Framework for Comprehensive Proteomics Based on de Novo Transcriptome Assembly and High-Accuracy Peptide Mass Spectral Matching. PMID:30295032
Parasitoid Jewel Wasp Mounts Multipronged Neurochemical Attack to Hijack a Host Brain. PMID:30293061
Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes. PMID:30266865
Development of Chemical Proteomics for the Folateome and Analysis of the Kinetoplastid Folateome. PMID:30264983
cTAGE5/MEA6 plays a critical role in neuronal cellular components trafficking and brain development. PMID:30224460
Xrp1 genetically interacts with the ALS-associated FUS orthologue caz and mediates its toxicity. PMID:30209068
Approaches to the discovery of non-invasive urinary biomarkers of prostate cancer. PMID:30197761
Effects of Acetylation and Phosphorylation on Subunit Interactions in Three Large Eukaryotic Complexes. PMID:30181345
Comparative proteomic analysis of normal and gliotic PVR retina and contribution of Müller glia to this profile. PMID:30176221
Assembling the Community-Scale Discoverable Human Proteome. PMID:30172843
Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome. PMID:30171158
A Bordetella pertussis MgtC homolog plays a role in the intracellular survival. PMID:30161230
The Omics Revolution Continues: The Maturation of High-Throughput Biological Data Sources. PMID:30157526
Comparative Secretome Analyses of Primary Murine White and Brown Adipocytes Reveal Novel Adipokines. PMID:30135203
Label-free quantitative mass spectrometry analysis of differential protein expression in the developing cochlear sensory epithelium. PMID:30127667
Proteomic phenotyping of metastatic melanoma reveals putative signatures of MEK inhibitor response and prognosis. PMID:30116025
Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms. PMID:30061707
Proteomic evidence of dietary sources in ancient dental calculus. PMID:30051838
Small molecule inhibitors reveal an indispensable scaffolding role of RIPK2 in NOD2 signaling. PMID:30026309
Early phosphoproteomic changes for adverse outcome pathway development in the fathead minnow (Pimephales promelas) brain. PMID:29977039
Screening for biomarkers reflecting the progression of Babesia microti infection. PMID:29970143
Single-walled carbon-nanohorns improve biocompatibility over nanotubes by triggering less protein-initiated pyroptosis and apoptosis in macrophages. PMID:29921862
MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides. PMID:29915279
Local and global influences on protein turnover in neurons and glia. PMID:29914620
⿿Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples. PMID:29900094
Exploring the Denitrification Proteome of Paracoccus denitrificans PD1222. PMID:29896187
A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes. PMID:29889196
The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen. PMID:29884134
Chlorosis as a Developmental Program in Cyanobacteria: The Proteomic Fundament for Survival and Awakening. PMID:29848780
Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus. PMID:29793340
Identification of brain antigens recognized by autoantibodies in experimental autoimmune encephalomyelitis-induced animals treated with etomoxir or interferon-β. PMID:29728570
Molecular alterations associated with chronic exposure to cigarette smoke and chewing tobacco in normal oral keratinocytes. PMID:29723088
De novo activating mutations drive clonal evolution and enhance clonal fitness in KMT2A-rearranged leukemia. PMID:29720585
Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms. PMID:29713252
An effector from the Huanglongbing-associated pathogen targets citrus proteases. PMID:29712915
An Integrated Approach of Proteomics and Computational Genetic Modification Effectiveness Analysis to Uncover the Mechanisms of Flood Tolerance in Soybeans. PMID:29701710
NUFIP1 is a ribosome receptor for starvation-induced ribophagy. PMID:29700228
Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry. PMID:29695722
Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis. PMID:29688452
Mapping the tumour human leukocyte antigen (HLA) ligandome by mass spectrometry. PMID:29658117
Remote Atmospheric Pressure Infrared Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry (Remote IR-MALDI MS) of Proteins. PMID:29653959
Quantitative Proteomic Profiling of the Human Ovary from Early to Mid-Gestation Reveals Protein Expression Dynamics of Oogenesis and Folliculogenesis. PMID:29631484
Tadpole-like Conformations of Huntingtin Exon 1 Are Characterized by Conformational Heterogeneity that Persists regardless of Polyglutamine Length. PMID:29627459
Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting. PMID:29603563
AP-SWATH Reveals Direct Involvement of VCP/p97 in Integrated Stress Response Signaling Through Facilitating CReP/PPP1R15B Degradation. PMID:29599191
TAILS N-terminomics and proteomics reveal complex regulation of proteolytic cleavage by O-glycosylation. PMID:29593093
Targeting focal adhesion kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of epidermal growth factor receptor. PMID:29556515
Proteome and Transcriptome Analysis of Ovary, Intersex Gonads, and Testis Reveals Potential Key Sex Reversal/Differentiation Genes and Mechanism in Scallop Chlamys nobilis. PMID:29546597
Aqueous humor protein dysregulation in primary angle-closure glaucoma. PMID:29536409
Paclitaxel Treatment and Proprotein Convertase 1/3 (PC1/3) Knockdown in Macrophages is a Promising Antiglioma Strategy as Revealed by Proteomics and Cytotoxicity Studies. PMID:29531019
p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage. PMID:29523821
SuperQuant-assisted comparative proteome analysis of glioblastoma subpopulations allows for identification of potential novel therapeutic targets and cell markers. PMID:29507698
H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenum. PMID:29507607
Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors. PMID:29507054
Contractile Work Contributes to Maturation of Energy Metabolism in hiPSC-Derived Cardiomyocytes. PMID:29503093
Aging-associated changes in hippocampal glycogen metabolism in mice. Evidence for and against astrocyte-to-neuron lactate shuttle. PMID:29493012
Role of protein kinase N2 (PKN2) in cigarette smoke-mediated oncogenic transformation of oral cells. PMID:29480433
Milk Peptidomics to Identify Functional Peptides and for Quality Control of Dairy Products. PMID:29476515
The Gene-Centric Content Management System and Its Application for Cognitive Proteomics. PMID:29473895
Proteomic identification and characterization of hepatic glyoxalase 1 dysregulation in non-alcoholic fatty liver disease. PMID:29456458
Targeted Profiling of Arabidopsis thaliana Subproteomes Illuminates Co- and Posttranslationally N-Terminal Myristoylated Proteins. PMID:29453228
ZBTB2 reads unmethylated CpG island promoters and regulates embryonic stem cell differentiation. PMID:29437775
Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity. PMID:29422648
Exploring the potential of 3D Zernike descriptors and SVM for protein-protein interface prediction. PMID:29409446
Molecular Profile of Priapism Associated with Low Nitric Oxide Bioavailability. PMID:29394072
Analysis of essential gene dynamics under antibiotic stress in Streptococcus sanguinis. PMID:29393020
Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins. PMID:29388937
Integrated transcriptomic and proteomic analyses reveal potential mechanisms linking thermal stress and depressed disease resistance in the turbot Scophthalmus maximus. PMID:29382883
Proteomic Profiling Reveals the Transglutaminase-2 Externalization Pathway in Kidneys after Unilateral Ureteric Obstruction. PMID:29382685
Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC). PMID:29363612
Biomechanical Rigidity and Quantitative Proteomics Analysis of Segmental Regions of the Trabecular Meshwork at Physiologic and Elevated Pressures. PMID:29340639
Mucosal Infections and Invasive Potential of Nonencapsulated Streptococcus pneumoniae Are Enhanced by Oligopeptide Binding Proteins AliC and AliD. PMID:29339428
The Plantain Proteome, a Focus on Allele Specific Proteins Obtained from Plantain Fruits. PMID:29333696
MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection. PMID:29331515
Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms. PMID:29317857
N-Glycoproteomic Characterization of Mannosidase and Xylosyltransferase Mutant Strains of Chlamydomonasreinhardtii. PMID:29288232
Comparative Proteomics Analysis of Urine Reveals Down-Regulation of Acute Phase Response Signaling and LXR/RXR Activation Pathways in Prostate Cancer. PMID:29286311
Renal oncocytoma characterized by the defective complex I of the respiratory chain boosts the synthesis of the ROS scavenger glutathione. PMID:29285300
Landscape of nuclear transport receptor cargo specificity. PMID:29254951
Unravelling Protein-Protein Interaction Networks Linked to Aliphatic and Indole Glucosinolate Biosynthetic Pathways in Arabidopsis. PMID:29238354
Effects of Alanyl-Glutamine Treatment on the Peritoneal Dialysis Effluent Proteome Reveal Pathomechanism-Associated Molecular Signatures. PMID:29208752
Phosphoproteomics of cAMP signaling of Bordetella adenylate cyclase toxin in mouse dendritic cells. PMID:29176673
Comparison of Quantitative Mass Spectrometry Platforms for Monitoring Kinase ATP Probe Uptake in Lung Cancer. PMID:29164889
Identification of Upstream Kinases by Fluorescence Complementation Mass Spectrometry. PMID:29104924
A signature of enhanced lipid metabolism, lipid peroxidation and aldehyde stress in therapy-induced senescence. PMID:29090099
Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota. PMID:29085914
Proteomics dataset: The colon mucosa from inflammatory bowel disease patients, gastrointestinal asymptomic rheumatoid arthritis patients, and controls. PMID:29085871
Chemical Proteomics for Target Discovery of Head-to-Tail Cyclized Mini-Proteins. PMID:29075625
PRMT5: A novel regulator of Hepatitis B virus replication and an arginine methylase of HBV core. PMID:29065155
In vivo phosphoproteome characterization reveals key starch granule-binding phosphoproteins involved in wheat water-deficit response. PMID:29058608
The Encyclopedia of Proteome Dynamics: a big data ecosystem for (prote)omics. PMID:28981707
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures. PMID:28981567
Fast hyperbaric decompression after heliox saturation altered the brain proteome in rats. PMID:28977037
Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events. PMID:28957512
Proteomic Analysis of Phytophthora infestans Reveals the Importance of Cell Wall Proteins in Pathogenicity. PMID:28935716
Bacterial outer membrane vesicles suppress tumor by interferon-γ-mediated antitumor response. PMID:28931823
Comparative Interactomes of VRK1 and VRK3 with Their Distinct Roles in the Cell Cycle of Liver Cancer. PMID:28927264
Matrisome Profiling During Intervertebral Disc Development And Ageing. PMID:28912585
The C-terminal residue of phage Vp16 PDF, the smallest peptide deformylase, acts as an offset element locking the active conformation. PMID:28887476
A thiol probe for measuring unfolded protein load and proteostasis in cells. PMID:28883394
pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification. PMID:28874712
Human Leukocyte Antigen (HLA)-DRB1*15:01 and HLA-DRB5*01:01 Present Complementary Peptide Repertoires. PMID:28871256
The EAL-domain protein FcsR regulates flagella, chemotaxis and type III secretion system in Pseudomonas aeruginosa by a phosphodiesterase independent mechanism. PMID:28860517
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
Diversity of Amyloid-beta Proteoforms in the Alzheimer's Disease Brain. PMID:28842697
Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes. PMID:28837811
Treating the placenta to prevent adverse effects of gestational hypoxia on fetal brain development. PMID:28831049
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry. PMID:28827567
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses. PMID:28825704
Epac1-deficient mice have bleeding phenotype and thrombocytes with decreased GPIbβ expression. PMID:28821815
High Sensitivity Quantitative Proteomics Using Automated Multidimensional Nano-flow Chromatography and Accumulated Ion Monitoring on Quadrupole-Orbitrap-Linear Ion Trap Mass Spectrometer. PMID:28821601
Comprehensive proteome profiling in Aedes albopictus to decipher Wolbachia-arbovirus interference phenomenon. PMID:28821226
Re-adaption on Earth after Spaceflights Affects the Mouse Liver Proteome. PMID:28805685
Quantitative proteomics screen identifies a substrate repertoire of rhomboid protease RHBDL2 in human cells and implicates it in epithelial homeostasis. PMID:28779096
Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints. PMID:28779005
The Sharpin interactome reveals a role for Sharpin in lamellipodium formation via the Arp2/3 complex. PMID:28775156
Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode. PMID:28751896
The proteome and transcriptome of the infectious metacyclic form of Trypanosoma brucei define quiescent cells primed for mammalian invasion. PMID:28742275
Food allergen detection by mass spectrometry: the role of systems biology. PMID:28725476
Significant and unique changes in phosphorylation levels of four phosphoproteins in two apple rootstock genotypes under drought stress. PMID:28710562
DELAY OF GERMINATION1 requires PP2C phosphatases of the ABA signalling pathway to control seed dormancy. PMID:28706187
A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom. PMID:28696408
Tumor matrix stiffness promotes metastatic cancer cell interaction with the endothelium. PMID:28694244
Large-Scale Analysis of Breast Cancer-Related Conformational Changes in Proteins Using SILAC-SPROX. PMID:28673085
RhoA Inhibitor Treatment At Acute Phase of Spinal Cord Injury May Induce Neurite Outgrowth and Synaptogenesis. PMID:28659490
Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion. PMID:28650996
Somatostatin binds to the human amyloid β peptide and favors the formation of distinct oligomers. PMID:28650319
mTORC2 Regulates Amino Acid Metabolism in Cancer by Phosphorylation of the Cystine-Glutamate Antiporter xCT. PMID:28648777
Quantitative Phosphoproteomics Reveals a Role for Collapsin Response Mediator Protein 2 in PDGF-Induced Cell Migration. PMID:28638064
Global proteomic analysis of advanced glycation end products in the Arabidopsis proteome provides evidence for age-related glycation hot spots. PMID:28611063
Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas. PMID:28607076
Split-BioID a conditional proteomics approach to monitor the composition of spatiotemporally defined protein complexes. PMID:28585547
The Ser/Thr Protein Kinase Protein-Protein Interaction Map of M. tuberculosis. PMID:28572091
Characterization of the CLASP2 Protein Interaction Network Identifies SOGA1 as a Microtubule-Associated Protein. PMID:28550165
ProteoSign: an end-user online differential proteomics statistical analysis platform. PMID:28520987
Mass spectrometry data from label-free quantitative proteomic analysis of harmless and pathogenic strains of infectious microalgae, Prototheca spp. PMID:28480323
Optimizing the Parameters Governing the Fragmentation of Cross-Linked Peptides in a Tribrid Mass Spectrometer. PMID:28402676
The Proteins API: accessing key integrated protein and genome information. PMID:28383659
ERCC1-XPF cooperates with CTCF and cohesin to facilitate the developmental silencing of imprinted genes. PMID:28368372
Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry. PMID:28355572
Structural modeling of protein-RNA complexes using crosslinking of segmentally isotope-labeled RNA and MS/MS. PMID:28346450
OLFM4, KNG1 and Sec24C identified by proteomics and immunohistochemistry as potential markers of early colorectal cancer stages. PMID:28344541
Light-sensing via hydrogen peroxide and a peroxiredoxin. PMID:28337980
Quantitative Shotgun Proteomics Unveils Candidate Novel Esophageal Adenocarcinoma (EAC)-specific Proteins. PMID:28336725
Quantitative Tyrosine Phosphoproteomics of Epidermal Growth Factor Receptor (EGFR) Tyrosine Kinase Inhibitor-treated Lung Adenocarcinoma Cells Reveals Potential Novel Biomarkers of Therapeutic Response. PMID:28331001
Effects of insulin and the glucagon-like peptide 1 receptor agonist liraglutide on the kidney proteome in db/db mice. PMID:28330952
Neisseria meningitidis Uses Sibling Small Regulatory RNAs To Switch from Cataplerotic to Anaplerotic Metabolism. PMID:28325760
Comparison of proteomic profiles in the zebrafish retina during experimental degeneration and regeneration. PMID:28300160
Identifying protein kinase-specific effectors of the osmostress response in yeast. PMID:28270554
Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3. PMID:28270225
Social network architecture of human immune cells unveiled by quantitative proteomics. PMID:28263321
Accurate Quantification of Site-specific Acetylation Stoichiometry Reveals the Impact of Sirtuin Deacetylase CobB on the E. coli Acetylome. PMID:28254776
Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS). PMID:28253357
PAPE (Prefractionation-Assisted Phosphoprotein Enrichment): A Novel Approach for Phosphoproteomic Analysis of Green Tissues from Plants. PMID:28250405
Proteome Changes Induced by Imatinib and Novel Imatinib Derivatives in K562 Human Chronic Myeloid Leukemia Cells. PMID:28250386
Proteomic Profiling of Sugar Beet (Beta vulgaris) Leaves during Rhizomania Compatible Interactions. PMID:28250378
Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields. PMID:28234898
In Vivo and in Vitro Proteome Analysis of Human Immunodeficiency Virus (HIV)-1-infected, Human CD4+ T Cells. PMID:28223351
Secreted CLIC3 drives cancer progression through its glutathione-dependent oxidoreductase activity. PMID:28198360
N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes. PMID:28191904
Changes in protein expression after treatment with Ancylostoma caninum excretory/secretory products in a mouse model of colitis. PMID:28191818
CLUH regulates mitochondrial metabolism by controlling translation and decay of target mRNAs. PMID:28188211
Clustered, Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9-coupled Affinity Purification/Mass Spectrometry Analysis Revealed a Novel Role of Neurofibromin in mTOR Signaling. PMID:28174230
Protein Bioinformatics Databases and Resources. PMID:28150231
A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate. PMID:28129334
A proteomic approach to identify endosomal cargoes controlling cancer invasiveness. PMID:28062852
Temporal quantitative phosphoproteomics of ADP stimulation reveals novel central nodes in platelet activation and inhibition. PMID:28060719
Label-Free Quantitative Proteomic Analysis of Harmless and Pathogenic Strains of Infectious Microalgae, Prototheca spp. PMID:28036087
Myofibrillar Z-discs Are a Protein Phosphorylation Hot Spot with Protein Kinase C (PKCα) Modulating Protein Dynamics. PMID:28028127
Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila. PMID:27986836
Near-atomic-resolution cryo-EM analysis of the Salmonella T3S injectisome basal body. PMID:27974800
Activity-Based Protein Profiling Shows Heterogeneous Signaling Adaptations to BRAF Inhibition. PMID:27934295
Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus. PMID:27928680
Exploring experimental cerebral malaria pathogenesis through the characterisation of host-derived plasma microparticle protein content. PMID:27917875
Changes in the Membrane-Associated Proteins of Exosomes Released from Human Macrophages after Mycobacterium tuberculosis Infection. PMID:27897233
Differential Protein Expression in the Hemolymph of Bithynia siamensis goniomphalos Infected with Opisthorchis viverrini. PMID:27893749
PpEst is a novel PBAT degrading polyesterase identified by proteomic screening of Pseudomonas pseudoalcaligenes. PMID:27872998
Phyllosphere Metaproteomes of Trees from the Brazilian Atlantic Forest Show High Levels of Functional Redundancy. PMID:27853840
Human promyelocytic leukemia protein is targeted to distinct subnuclear domains in plant nuclei and colocalizes with nucleolar constituents in a SUMO-dependent manner. PMID:27833854
Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome. PMID:27822555
Quantitative Metaproteomics Highlight the Metabolic Contributions of Uncultured Phylotypes in a Thermophilic Anaerobic Digester. PMID:27815274
Proteomic profiling of retinoblastoma by high resolution mass spectrometry. PMID:27799869
Large-Scale Analysis of Breast Cancer-Related Conformational Changes in Proteins Using Limited Proteolysis. PMID:27794609
Proteome rebalancing in transgenic Camelina occurs within the enlarged proteome induced by β-carotene accumulation and storage protein suppression. PMID:27771868
Novel non-canonical role of STAT1 in Natural Killer cell cytotoxicity. PMID:27757297
N-glycosylation proteome enrichment analysis in kidney reveals differences between diabetic mouse models. PMID:27757071
Arginine phosphorylation marks proteins for degradation by a Clp protease. PMID:27749819
A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti. PMID:27748755
The Brain Proteome of the Ubiquitin Ligase Peli1 Knock-Out Mouse during Experimental Autoimmune Encephalomyelitis. PMID:27746629
Dinitrogenase-Driven Photobiological Hydrogen Production Combats Oxidative Stress in Cyanothece sp. Strain ATCC 51142. PMID:27742679
A multicenter study benchmarks software tools for label-free proteome quantification. PMID:27701404
Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants. PMID:27690223
Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue. PMID:27686526
Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study. PMID:27685442
A method for whole protein isolation from human cranial bone. PMID:27677936
Combined Antibody/Lectin Enrichment Identifies Extensive Changes in the O-GlcNAc Sub-proteome upon Oxidative Stress. PMID:27669760
Proteomic Analysis of Non-depleted Serum Proteins from Bottlenose Dolphins Uncovers a High Vanin-1 Phenotype. PMID:27667588
Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana. PMID:27625672
Dataset of differentially regulated proteins in HUVECs challenged with wild type and UGM1 mutant Aspergillus fumigatus strains. PMID:27622208
Techniques and Approaches to Genetic Analyses in Nephrological Disorders. PMID:27617137
The effects of proteasomal inhibition on synaptic proteostasis. PMID:27613546
Biosynthesis and Regulation of Wheat Amylose and Amylopectin from Proteomic and Phosphoproteomic Characterization of Granule-binding Proteins. PMID:27604546
Data sources for in vivo molecular profiling of human phenotypes. PMID:27599755
On the privacy risks of sharing clinical proteomics data. PMID:27595046
Baseline Immunoglobulin E Levels as a Marker of Doxorubicin- and Trastuzumab-Associated Cardiac Dysfunction. PMID:27582370
Loss of Pink1 modulates synaptic mitochondrial bioenergetics in the rat striatum prior to motor symptoms: concomitant complex I respiratory defects and increased complex II-mediated respiration. PMID:27568932
A Proteomic Approach to Lipo-Chitooligosaccharide and Thuricin 17 Effects on Soybean GerminationUnstressed and Salt Stress. PMID:27560934
Temporal regulation of Lsp1 O-GlcNAcylation and phosphorylation during apoptosis of activated B cells. PMID:27555448
Chronic exposure to cigarette smoke leads to activation of p21 (RAC1)-activated kinase 6 (PAK6) in non-small cell lung cancer cells. PMID:27542207
A Metaproteomic Analysis of the Response of a Freshwater Microbial Community under Nutrient Enrichment. PMID:27536273
A Skyline Plugin for Pathway-Centric Data Browsing. PMID:27530777
Quantitative Non-canonical Amino Acid Tagging (QuaNCAT) Proteomics Identifies Distinct Patterns of Protein Synthesis Rapidly Induced by Hypertrophic Agents in Cardiomyocytes, Revealing New Aspects of Metabolic Remodeling. PMID:27512079
Chronic Iron Limitation Confers Transient Resistance to Oxidative Stress in Marine Diatoms. PMID:27503604
The N-myristoylome of Trypanosoma cruzi. PMID:27492267
Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type. PMID:27462366
Determinants of Macromolecular Specificity from Proteomics-Derived Peptide Substrate Data. PMID:27455965
Optimized Fragmentation Regime for Diazirine Photo-Cross-Linked Peptides. PMID:27454319
Seasonal Variation of Carbon Metabolism in the Cambial Zone of Eucalyptus grandis. PMID:27446160
Defining the Protein-Protein Interaction Network of the Human Protein Tyrosine Phosphatase Family. PMID:27432908
Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals. PMID:27408916
Mass spectrometry data for in vitro protein profiles in early and late stages of Douglas-fir xylogenesis. PMID:27408915
Valosin-containing protein (VCP)-Adaptor Interactions are Exceptionally Dynamic and Subject to Differential Modulation by a VCP Inhibitor. PMID:27406709
A threshold of endogenous stress is required to engage cellular response to protect against mutagenesis. PMID:27406380
Proteome-wide measurement of non-canonical bacterial mistranslation by quantitative mass spectrometry of protein modifications. PMID:27377007
Identification of Cargo for Adaptor Protein (AP) Complexes 3 and 4 by Sucrose Gradient Profiling. PMID:27371946
Coordination of Metabolism and Virulence Factors Expression of Extraintestinal Pathogenic Escherichia coli Purified from Blood Cultures of Patients with Sepsis. PMID:27364158
Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis. PMID:27344979
Global Profiling and Inhibition of Protein Lipidation in Vector and Host Stages of the Sleeping Sickness Parasite Trypanosoma brucei. PMID:27331140
aKMT Catalyzes Extensive Protein Lysine Methylation in the Hyperthermophilic Archaeon Sulfolobus islandicus but is Dispensable for the Growth of the Organism. PMID:27329856
Prion Protein Deficiency Causes Diverse Proteome Shifts in Cell Models That Escape Detection in Brain Tissue. PMID:27327609
Discovery of Manassantin A Protein Targets Using Large-Scale Protein Folding and Stability Measurements. PMID:27322910
Label-free Quantification of Proteins in Single Embryonic Cells with Neural Fate in the Cleavage-Stage Frog (Xenopus laevis) Embryo using Capillary Electrophoresis Electrospray Ionization High-Resolution Mass Spectrometry (CE-ESI-HRMS). PMID:27317400
Transgenic Soybean Production of Bioactive Human Epidermal Growth Factor (EGF). PMID:27314851
Long noncoding RNA EGOT negatively affects the antiviral response and favors HCV replication. PMID:27283940
Synovial fluid proteome in rheumatoid arthritis. PMID:27274716
Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. PMID:27250503
Proteomic Analysis of the Spatio-temporal Based Molecular Kinetics of Acute Spinal Cord Injury Identifies a Time- and Segment-specific Window for Effective Tissue Repair. PMID:27250205
Plasma-derived Extracellular Vesicles Contain Predictive Biomarkers and Potential Therapeutic Targets for Myocardial Ischemic (MI) Injury. PMID:27234505
Proteomics Analysis with a Nano Random Forest Approach Reveals Novel Functional Interactions Regulated by SMC Complexes on Mitotic Chromosomes. PMID:27231315
PyQuant: A Versatile Framework for Analysis of Quantitative Mass Spectrometry Data. PMID:27231314
Comparative Proteomic Analysis of Soybean Leaves and Roots by iTRAQ Provides Insights into Response Mechanisms to Short-Term Salt Stress. PMID:27200046
Evolutionary Events Associated with an Outbreak of Meningococcal Disease in Men Who Have Sex with Men. PMID:27167067
Active Yeast Telomerase Shares Subunits with Ribonucleoproteins RNase P and RNase MRP. PMID:27156450
Gluten-specific antibodies of celiac disease gut plasma cells recognize long proteolytic fragments that typically harbor T-cell epitopes. PMID:27146306
The Pathogenesis of the Demyelinating Form of Guillain-Barre Syndrome (GBS): Proteo-peptidomic and Immunological Profiling of Physiological Fluids. PMID:27143409
Data for identification of GPI-anchored peptides and ω-sites in cancer cell lines. PMID:27141528
Multilayered proteomics reveals molecular switches dictating ligand-dependent EGFR trafficking. PMID:27136326
Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats. PMID:27135913
Trapping mammalian protein complexes in viral particles. PMID:27122307
Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry. PMID:27092112
Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation. PMID:27087446
Regulation of Platelet Derived Growth Factor Signaling by Leukocyte Common Antigen-related (LAR) Protein Tyrosine Phosphatase: A Quantitative Phosphoproteomics Study. PMID:27074791
Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4+ T lymphocytes. PMID:27067055
De Novo Genes Arise at a Slow but Steady Rate along the Primate Lineage and Have Been Subject to Incomplete Lineage Sorting. PMID:27056411
Proteome-wide dataset supporting functional study of tyrosine kinases in breast cancer. PMID:27054188
Genic insights from integrated human proteomics in GeneCards. PMID:27048349
Intact Cell MALDI-TOF MS on Sperm: A Molecular Test For Male Fertility Diagnosis. PMID:27044871
Enzymatic properties, evidence for in vivo expression, and intracellular localization of shewasin D, the pepsin homolog from Shewanella denitrificans. PMID:27029611
DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae. PMID:27017623
Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements. PMID:27016732
Label-free quantification in ion mobility-enhanced data-independent acquisition proteomics. PMID:27010757
Urine Proteome Biomarkers in Kidney Diseases. I. Limits, Perspectives, and First Focus on Normal Urine. PMID:26997865
A Protein Complex Map of Trypanosoma brucei. PMID:26991453
A CEP215-HSET complex links centrosomes with spindle poles and drives centrosome clustering in cancer. PMID:26987684
Active site specificity profiling datasets of matrix metalloproteinases (MMPs) 1, 2, 3, 7, 8, 9, 12, 13 and 14. PMID:26981551
Validation, optimisation, and application data in support of the development of a targeted selected ion monitoring assay for degraded cardiac troponin T. PMID:26977445
Global proteomic characterization of microdissected estrogen receptor positive breast tumors. PMID:26958599
Data for proteomic profiling of Anthers from a photosensitive male sterile mutant and wild-type cotton (Gossypium hirsutum L.). PMID:26958592
Data in support of proteomic analysis of pneumococcal pediatric clinical isolates to construct a protein array. PMID:26949725
Cleaning out the Litterbox of Proteomic Scientists' Favorite Pet: Optimized Data Analysis Avoiding Trypsin Artifacts. PMID:26938934
Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies. PMID:26937473
Proteome identification of the silkworm middle silk gland. PMID:26937469
Proteomic Analysis Reveals Branch-specific Regulation of the Unfolded Protein Response by Nonsense-mediated mRNA Decay. PMID:26896796
A Novel Systems-Biology Algorithm for the Analysis of Coordinated Protein Responses Using Quantitative Proteomics. PMID:26893027
New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach. PMID:26883867
Proteomic data on the nuclear interactome of human MCM9. PMID:26870752
Induction of virulence factors in Giardia duodenalis independent of host attachment. PMID:26867958
Time-course investigation of Phytophthora infestans infection of potato leaf from three cultivars by quantitative proteomics. PMID:26862565
Circadian control of oscillations in mitochondrial rate-limiting enzymes and nutrient utilization by PERIOD proteins. PMID:26862173
The Endoplasmic Reticulum Chaperone Calnexin Is a NADPH Oxidase NOX4 Interacting Protein. PMID:26861875
Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes. PMID:26858453
Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers. PMID:26857143
An Impaired Respiratory Electron Chain Triggers Down-regulation of the Energy Metabolism and De-ubiquitination of Solute Carrier Amino Acid Transporters. PMID:26852163
Ataxin-2 (Atxn2)-Knock-Out Mice Show Branched Chain Amino Acids and Fatty Acids Pathway Alterations. PMID:26850065
Adaptive Remodeling of the Bacterial Proteome by Specific Ribosomal Modification Regulates Pseudomonas Infection and Niche Colonisation. PMID:26845436
Anatomical heterogeneity of tendon: Fascicular and interfascicular tendon compartments have distinct proteomic composition. PMID:26842662
Modulation of FAK and Src adhesion signaling occurs independently of adhesion complex composition. PMID:26833789
Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases. PMID:26832403
The contribution of Alu exons to the human proteome. PMID:26821878
Towards Understanding Male Infertility After Spinal Cord Injury Using Quantitative Proteomics. PMID:26814186
CodY Regulates the Activity of the Virulence Quorum Sensor PlcR by Controlling the Import of the Signaling Peptide PapR in Bacillus thuringiensis. PMID:26779156
Sampling From the Proteome to the Human Leukocyte Antigen-DR (HLA-DR) Ligandome Proceeds Via High Specificity. PMID:26764012
High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. PMID:26760575
Systematic evaluation of data-independent acquisition for sensitive and reproducible proteomics-a prototype design for a single injection assay. PMID:26757066
USP2-45 Is a Circadian Clock Output Effector Regulating Calcium Absorption at the Post-Translational Level. PMID:26756164
DCAF1 controls T-cell function via p53-dependent and -independent mechanisms. PMID:26728942
Proteomic profiling of maize opaque endosperm mutants reveals selective accumulation of lysine-enriched proteins. PMID:26712829
LymPHOS 2.0: an update of a phosphosite database of primary human T cells. PMID:26708986
Dog Tear Film Proteome In-Depth Analysis. PMID:26701646
Proteomic Analysis of a Fraction with Intact Eyespots of Chlamydomonas reinhardtii and Assignment of Protein Methylation. PMID:26697039
The dynamic interactome of human Aha1 upon Y223 phosphorylation. PMID:26693507
Delineating the glycoproteome of elongating cotton fiber cells. PMID:26693171
Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries. PMID:26684897
Taking Bioinformatics to Systems Medicine. PMID:26677177
Protein aggregation, structural disorder and RNA-binding ability: a new approach for physico-chemical and gene ontology classification of multiple datasets. PMID:26673865
Altered acetylation and succinylation profiles in Corynebacterium glutamicum in response to conditions inducing glutamate overproduction. PMID:26663479
Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0. PMID:26658470
Integrated analysis of global proteome, phosphoproteome, and glycoproteome enables complementary interpretation of disease-related protein networks. PMID:26657352
Annexin-A1 and caldesmon are associated with resistance to tamoxifen in estrogen receptor positive recurrent breast cancer. PMID:26657294
Data in support of the proteomic analysis of plasma membrane and tonoplast from the leaves of mangrove plant Avicennia officinalis. PMID:26649327
Dataset for the proteomic inventory and quantitative analysis of the breast cancer hypoxic secretome associated with osteotropism. PMID:26649326
Immunohistochemical Markers Distinguishing Cholangiocellular Carcinoma (CCC) from Pancreatic Ductal Adenocarcinoma (PDAC) Discovered by Proteomic Analysis of Microdissected Cells. PMID:26644413
The quantitative and condition-dependent Escherichia coli proteome. PMID:26641532
Hepatocytes respond differently to major dietary trans fatty acid isomers, elaidic acid and trans-vaccenic acid. PMID:26628894
Immobilized Metal Affinity Chromatography Coupled to Multiple Reaction Monitoring Enables Reproducible Quantification of Phospho-signaling. PMID:26621847
An evolving computational platform for biological mass spectrometry: workflows, statistics and data mining with MASSyPup64. PMID:26618079
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. PMID:26615188
Mass Spectrometry and Antibody-Based Characterization of Blood Vessels from Brachylophosaurus canadensis. PMID:26595531
Identification and Validation of Atypical N-Glycosylation Sites. PMID:26593774
The effector repertoire of Fusarium oxysporum determines the tomato xylem proteome composition following infection. PMID:26583031
Metabolic Interplay between the Asian Citrus Psyllid and Its Profftella Symbiont: An Achilles' Heel of the Citrus Greening Insect Vector. PMID:26580079
The effect of microbial colonization on the host proteome varies by gastrointestinal location. PMID:26574685
Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides. PMID:26571101
A novel phosphorylation site at Ser130 adjacent to the pseudosubstrate domain contributes to the activation of protein kinase C-δ. PMID:26546672
Life Stage-specific Proteomes of Legionella pneumophila Reveal a Highly Differential Abundance of Virulence-associated Dot/Icm effectors. PMID:26545400
PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets. PMID:26545397
Characterization of the porcine synovial fluid proteome and a comparison to the plasma proteome. PMID:26543887
Comprehensive Cross-Linking Mass Spectrometry Reveals Parallel Orientation and Flexible Conformations of Plant HOP2-MND1. PMID:26535604
Low Mass Blood Peptides Discriminative of Inflammatory Bowel Disease (IBD) Severity: A Quantitative Proteomic Perspective. PMID:26530476
Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer. PMID:26530123
sORFs.org: a repository of small ORFs identified by ribosome profiling. PMID:26527729
2016 update of the PRIDE database and its related tools. PMID:26527722
Proteomes of the Female Genital Tract During the Oestrous Cycle. PMID:26518761
Multiclassifier combinatorial proteomics of organelle shadows at the example of mitochondria in chromatin data. PMID:26510496
Temporal Phosphoproteome Dynamics Induced by an ATP Synthase Inhibitor Citreoviridin. PMID:26503892
Insight into the Protein Composition of Immunoglobulin Light Chain Deposits of Eyelid, Orbital and Conjunctival Amyloidosis. PMID:26500418
Comparative Phosphoproteomics Reveals the Role of AmpC β-lactamase Phosphorylation in the Clinical Imipenem-resistant Strain Acinetobacter baumannii SK17. PMID:26499836
RNA-binding protein CELF1 promotes tumor growth and alters gene expression in oral squamous cell carcinoma. PMID:26498364
Effects of low temperature on tropical and temperate isolates of marine Synechococcus. PMID:26495993
Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants. PMID:26481351
Definition of a consensus integrin adhesome and its dynamics during adhesion complex assembly and disassembly. PMID:26479319
Accuracy and Reproducibility in Quantification of Plasma Protein Concentrations by Mass Spectrometry without the Use of Isotopic Standards. PMID:26474480
Characterization and quantification of proteins secreted by single human embryos prior to implantation. PMID:26471863
Phosphoproteomic screening identifies Rab GTPases as novel downstream targets of PINK1. PMID:26471730
Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation. PMID:26455268
Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A. PMID:26453029
Proteomics Analysis Reveals Distinct Corona Composition on Magnetic Nanoparticles with Different Surface Coatings: Implications for Interactions with Primary Human Macrophages. PMID:26444829
A proteomic glimpse into human ureter proteome. PMID:26442468
Integrin endosomal signalling suppresses anoikis. PMID:26436690
Dataset from the global phosphoproteomic mapping of early mitotic exit in human cells. PMID:26425664
Positive Mode LC-MS/MS Analysis of Chondroitin Sulfate Modified Glycopeptides Derived from Light and Heavy Chains of The Human Inter-α-Trypsin Inhibitor Complex. PMID:26407992
Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase. PMID:26401955
Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining. PMID:26399495
Chronic exposure to chewing tobacco selects for overexpression of stearoyl-CoA desaturase in normal oral keratinocytes. PMID:26391970
Proteins from formalin-fixed paraffin-embedded prostate cancer sections that predict the risk of metastatic disease. PMID:26388710
Data from a proteomic baseline study of Assemblage A in Giardia duodenalis. PMID:26380841
Toward a standard in structural genome annotation for prokaryotes. PMID:26380633
Laser Ablation with Vacuum Capture for MALDI Mass Spectrometry of Tissue. PMID:26374229
Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions. PMID:26358839
Delivery of Alginate Scaffold Releasing Two Trophic Factors for Spinal Cord Injury Repair. PMID:26348665
Dual Labeling Biotin Switch Assay to Reduce Bias Derived From Different Cysteine Subpopulations: A Method to Maximize S-Nitrosylation Detection. PMID:26338901
Scientific workflow optimization for improved peptide and protein identification. PMID:26335531
Comparative Analysis of Label-Free and 8-Plex iTRAQ Approach for Quantitative Tissue Proteomic Analysis. PMID:26331617
Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study. PMID:26330543
Selected Reaction Monitoring Mass Spectrometry for Absolute Protein Quantification. PMID:26325288
Mass spectrometry data from proteomics-based screening of immunoreactive proteins of fully virulent Brucella strains using sera from naturally infected animals. PMID:26322324
Quantitative proteomics unravels that the post-transcriptional regulator Crc modulates the generation of vesicles and secreted virulence determinants of Pseudomonas aeruginosa. PMID:26306318
The proteome of the outer membrane vesicles of an Antarctic bacterium Pseudomonas syringae Lz4W. PMID:26306312
Comparative analysis of cerebrospinal fluid from the meningo-encephalitic stage of T. b. gambiense and rhodesiense sleeping sickness patients using TMT quantitative proteomics. PMID:26306311
The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity. PMID:26306205
A Catalog of Proteins Expressed in the AG Secreted Fluid during the Mature Phase of the Chinese Mitten Crabs (Eriocheir sinensis). PMID:26305468
The Prion Protein Controls Polysialylation of Neural Cell Adhesion Molecule 1 during Cellular Morphogenesis. PMID:26288071
4-protein signature predicting tamoxifen treatment outcome in recurrent breast cancer. PMID:26285647
Binary stress induces an increase in indole alkaloid biosynthesis in Catharanthus roseus. PMID:26284098
PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications. PMID:26283093
The Human Tau Interactome: Binding to the Ribonucleoproteome, and Impaired Binding of the Proline-to-Leucine Mutant at Position 301 (P301L) to Chaperones and the Proteasome. PMID:26269332
Proteogenomic analysis of psoriasis reveals discordant and concordant changes in mRNA and protein abundance. PMID:26251673
Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol. PMID:26245374
Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes. PMID:26230114
A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies. PMID:26224020
Datasets from an interaction proteomics screen for substrates of the SCF(βTrCP) ubiquitin ligase. PMID:26217795
Data for mitochondrial proteomic alterations in the aging mouse brain. PMID:26217775
Phospho-iTRAQ data article: Assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry. PMID:26217764
Characterization of the gila monster (Heloderma suspectum suspectum) venom proteome. PMID:26217734
Dataset from proteomic analysis of rat, mouse, and human liver microsomes and S9 fractions. PMID:26217725
The quantitative changes in the yeast Hsp70 and Hsp90 interactomes upon DNA damage. PMID:26217697
Data in support of peptidomic analysis of spermatozoa during epididymal maturation. PMID:26217693
Data for chicken semen proteome and label free quantitative analyses displaying sperm quality biomarkers. PMID:26217683
Data set for the proteomics analysis of the endomembrane system from the unicellular Entamoeba histolytica. PMID:26217682
MI-PVT: A Tool for Visualizing the Chromosome-Centric Human Proteome. PMID:26204236
Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation. PMID:26201687
Proteomic Characterisation of the Salt Gland-Enriched Tissues of the Mangrove Tree Species Avicennia officinalis. PMID:26193361
Comprehensive Protein Interactome Analysis of a Key RNA Helicase: Detection of Novel Stress Granule Proteins. PMID:26184334
A Pneumococcal Protein Array as a Platform to Discover Serodiagnostic Antigens Against Infection. PMID:26183717
Mammalian Bcnt/Cfdp1, a potential epigenetic factor characterized by an acidic stretch in the disordered N-terminal and Ser250 phosphorylation in the conserved C-terminal regions. PMID:26182435
Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates. PMID:26177073
An open-source computational and data resource to analyze digital maps of immunopeptidomes. PMID:26154972
Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover. PMID:26142280
The European Genome-phenome Archive of human data consented for biomedical research. PMID:26111507
Changes in the Acetylome and Succinylome of Bacillus subtilis in Response to Carbon Source. PMID:26098117
Proteasome targeting of proteins in Arabidopsis leaf mesophyll, epidermal and vascular tissues. PMID:26074939
Global Phosphoproteomic Mapping of Early Mitotic Exit in Human Cells Identifies Novel Substrate Dephosphorylation Motifs. PMID:26055452
Vav1 Regulates T-Cell Activation through a Feedback Mechanism and Crosstalk between the T-Cell Receptor and CD28. PMID:26043137
Identifying the ionically bound cell wall and intracellular glycoside hydrolases in late growth stage Arabidopsis stems: implications for the genetic engineering of bioenergy crops. PMID:26029221
Beyond the Western front: targeted proteomics and organelle abundance profiling. PMID:25999968
Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies. PMID:25993694
An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum. PMID:25990474
The fission yeast MTREC complex targets CUTs and unspliced pre-mRNAs to the nuclear exosome. PMID:25989903
A repository of assays to quantify 10,000 human proteins by SWATH-MS. PMID:25977788
A draft map of rhesus monkey tissue proteome for biomedical research. PMID:25974132
Members of the Plant CRK Superfamily Are Capable of Trans- and Autophosphorylation of Tyrosine Residues. PMID:25969537
Targeted analysis of recombinant NF kappa B (RelA/p65) by denaturing and native top down mass spectrometry. PMID:25952688
Molecular identification and functional characterization of the first Nα-acetyltransferase in plastids by global acetylome profiling. PMID:25951519
Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri. PMID:25930153
Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development. PMID:25926025
Proteomic Analysis of Plasma from California Sea Lions (Zalophus californianus) Reveals Apolipoprotein E as a Candidate Biomarker of Chronic Domoic Acid Toxicosis. PMID:25919366
Proteomic Investigation of the Response of Enterococcus faecalis V583 when Cultivated in Urine. PMID:25915650
ms-data-core-api: an open-source, metadata-oriented library for computational proteomics. PMID:25910694
Proteome Analysis of Watery Saliva Secreted by Green Rice Leafhopper, Nephotettix cincticeps. PMID:25909947
Expression of leukemia inhibitory factor in Müller glia cells is regulated by a redox-dependent mRNA stability mechanism. PMID:25907681
Introducing the PRIDE Archive RESTful web services. PMID:25904633
A mass spectrometric-derived cell surface protein atlas. PMID:25894527
A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day. PMID:25887394
Representation of selected-reaction monitoring data in the mzQuantML data standard. PMID:25884107
The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation. PMID:25879418
Comprehensive analysis of temporal alterations in cellular proteome of Bacillus subtilis under curcumin treatment. PMID:25874956
Phosphoproteome of the cyanobacterium Synechocystis sp. PCC 6803 and its dynamics during nitrogen starvation. PMID:25873915
A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum. PMID:25867681
Large oncosomes contain distinct protein cargo and represent a separate functional class of tumor-derived extracellular vesicles. PMID:25857301
Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens. PMID:25848929
The promise of multi-omics and clinical data integration to identify and target personalized healthcare approaches in autism spectrum disorders. PMID:25831060
Anion-exchange chromatography of phosphopeptides: weak anion exchange versus strong anion exchange and anion-exchange chromatography versus electrostatic repulsion-hydrophilic interaction chromatography. PMID:25827581
Global analysis of protein folding thermodynamics for disease state characterization. PMID:25825992
Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics. PMID:25814448
Infection of the brown alga Ectocarpus siliculosus by the oomycete Eurychasma dicksonii induces oxidative stress and halogen metabolism. PMID:25764246
Calcium calmodulin dependent kinase kinase 2 - a novel therapeutic target for gastric adenocarcinoma. PMID:25756516
Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs). PMID:25755299
Large-Scale Targeted Proteomics Using Internal Standard Triggered-Parallel Reaction Monitoring (IS-PRM). PMID:25755295
Comprehensive proteomics analysis of glycosomes from Leishmania donovani. PMID:25748437
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps. PMID:25730263
Quantitative proteomics reveals protein-protein interactions with fibroblast growth factor 12 as a component of the voltage-gated sodium channel 1.2 (nav1.2) macromolecular complex in Mammalian brain. PMID:25724910
Web resources for mass spectrometry-based proteomics. PMID:25721607
Discovery and targeted proteomics on cutaneous biopsies infected by borrelia to investigate lyme disease. PMID:25713121
Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines. PMID:25656970
Huntingtin-associated protein 1 (HAP1) is a cGMP-dependent kinase anchoring protein (GKAP) specific for the cGMP-dependent protein kinase Iβ isoform. PMID:25653285
Long Non-Coding RNA BST2/BISPR is Induced by IFN and Regulates the Expression of the Antiviral Factor Tetherin. PMID:25620967
BDNF stimulation of protein synthesis in cortical neurons requires the MAP kinase-interacting kinase MNK1. PMID:25609615
A proteomic approach reveals integrin activation state-dependent control of microtubule cortical targeting. PMID:25609142
Alterations in the interactome of serine/threonine protein phosphatase type-1 in atrial fibrillation patients. PMID:25593058
Characterization of chloroplast protein import without Tic56, a component of the 1-megadalton translocon at the inner envelope membrane of chloroplasts. PMID:25588737
Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation. PMID:25576301
The proteome and lipidome of Synechocystis sp. PCC 6803 cells grown under light-activated heterotrophic conditions. PMID:25561504
Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana. PMID:25561503
Proteomic analysis and functional characterization of mouse brain mitochondria during aging reveal alterations in energy metabolism. PMID:25546256
A public repository for mass spectrometry imaging data. PMID:25542566
Endogenous human milk peptide release is greater after preterm birth than term birth. PMID:25540406
ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma. PMID:25538140
Integrating phosphoproteome and transcriptome reveals new determinants of macrophage multinucleation. PMID:25532521
Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli. PMID:25518064
In vivo assessment of protease dynamics in cutaneous wound healing by degradomics analysis of porcine wound exudates. PMID:25516628
Systematically ranking the tightness of membrane association for peripheral membrane proteins (PMPs). PMID:25505158
High-resolution quantitative proteome analysis reveals substantial differences between phagosomes of RAW 264.7 and bone marrow derived macrophages. PMID:25504905
CRISPR-Cas9-based knockout of the prion protein and its effect on the proteome. PMID:25490046
Quantitative proteomics reveals the effect of protein glycosylation in soybean root under flooding stress. PMID:25477889
Tomato nuclear proteome reveals the involvement of specific E2 ubiquitin-conjugating enzymes in fruit ripening. PMID:25464976
Mean of the typical decoding rates: a new translation efficiency index based on the analysis of ribosome profiling data. PMID:25452418
Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveal chaperone-dependent regulation of ribonucleotide reductase. PMID:25452130
Type I Interferon Regulates the Expression of Long Non-Coding RNAs. PMID:25414701
Anatomo-proteomic characterization of human basal ganglia: focus on striatum and globus pallidus. PMID:25406675
Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites. PMID:25405079
Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV. PMID:25404878
Beyond protein expression, MOPED goes multi-omics. PMID:25404128
Identification of putative substrates for the periplasmic chaperone YfgM in Escherichia coli using quantitative proteomics. PMID:25403562
C-terminomics screen for natural substrates of cytosolic carboxypeptidase 1 reveals processing of acidic protein C termini. PMID:25381060
Proteomics for systems toxicology. PMID:25379146
Current advances in systems and integrative biology. PMID:25379142
An update on LNCipedia: a database for annotated human lncRNA sequences. PMID:25378313
Identification of SUMO-2/3-modified proteins associated with mitotic chromosomes. PMID:25367092
Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS). PMID:25363814
Identifying novel biomarkers through data mining-a realistic scenario? PMID:25347964
Exploring the human plasma proteome for humoral mediators of remote ischemic preconditioning--a word of caution. PMID:25333471
TAILS N-terminomics of human platelets reveals pervasive metalloproteinase-dependent proteolytic processing in storage. PMID:25331112
The proteomic landscape of the suprachiasmatic nucleus clock reveals large-scale coordination of key biological processes. PMID:25330117
Alpha-1-antitrypsin: a novel human high temperature requirement protease A1 (HTRA1) substrate in human placental tissue. PMID:25329061
SRC homology 2 domain-containing leukocyte phosphoprotein of 76 kDa (SLP-76) N-terminal tyrosine residues regulate a dynamic signaling equilibrium involving feedback of proximal T-cell receptor (TCR) signaling. PMID:25316710
Analysis of the tryptic search space in UniProt databases. PMID:25307260
Systematic analysis of the phosphoproteome and kinase-substrate networks in the mouse testis. PMID:25293948
Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods. PMID:25293947
Quantitative phosphoproteomics of cytotoxic T cells to reveal protein kinase d 2 regulated networks. PMID:25266776
Quantitative phosphoproteomics reveals crosstalk between phosphorylation and O-GlcNAc in the DNA damage response pathway. PMID:25263469
Proteomic identification of mammalian cell surface derived glycosylphosphatidylinositol-anchored proteins through selective glycan enrichment. PMID:25262930
Proteolytic control of TGF-β co-receptor activity by BMP-1/tolloid-like proteases revealed by quantitative iTRAQ proteomics. PMID:25260970
A transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803. PMID:25239498
PeptideManager: a peptide selection tool for targeted proteomic studies involving mixed samples from different species. PMID:25228907
Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579. PMID:25216269
Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B. PMID:25208769
Copy number analysis of the murine platelet proteome spanning the complete abundance range. PMID:25205226
Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens. PMID:25191310
Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins. PMID:25173706
N-glycosylation site occupancy in human prostaglandin H synthases expressed in Pichia pastoris. PMID:25170432
A normative study of the synovial fluid proteome from healthy porcine knee joints. PMID:25160569
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685
Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome. PMID:25152083
Jagunal homolog 1 is a critical regulator of neutrophil function in fungal host defense. PMID:25129145
Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress. PMID:25128556
Ion mobility tandem mass spectrometry enhances performance of bottom-up proteomics. PMID:25106551
The bromodomain of Gcn5 regulates site specificity of lysine acetylation on histone H3. PMID:25106422
A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions. PMID:25104842
Toward effective sharing of high-dimensional immunology data. PMID:25101748
DeMix workflow for efficient identification of cofragmented peptides in high resolution data-dependent tandem mass spectrometry. PMID:25100859
Proteomic analysis of the human cyclin-dependent kinase family reveals a novel CDK5 complex involved in cell growth and migration. PMID:25096995
Large-scale proteomics differentiates cholesteatoma from surrounding tissues and identifies novel proteins related to the pathogenesis. PMID:25093596
Integration of proteomic and transcriptomic profiles identifies a novel PDGF-MYC network in human smooth muscle cells. PMID:25080971
Cell cycle-dependent phosphorylation of Theileria annulata schizont surface proteins. PMID:25077614
Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. PMID:25060758
Sex-partitioning of the Plasmodium falciparum stage V gametocyte proteome provides insight into falciparum-specific cell biology. PMID:25056935
Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs. PMID:25056316
The effect of tRNA levels on decoding times of mRNA codons. PMID:25056313
Characterization of functional reprogramming during osteoclast development using quantitative proteomics and mRNA profiling. PMID:25044017
In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR). PMID:25038066
Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosis. PMID:25038065
Identification of novel biomarker candidates for the immunohistochemical diagnosis of cholangiocellular carcinoma. PMID:25034945
Bioinformatic analysis of proteomics data. PMID:25033288
PhosFox: a bioinformatics tool for peptide-level processing of LC-MS/MS-based phosphoproteomic data. PMID:25028575
Identifying USPs regulating immune signals in Drosophila: USP2 deubiquitinates Imd and promotes its degradation by interacting with the proteasome. PMID:25027767
Identification of extracellular signal-regulated kinase 1 (ERK1) direct substrates using stable isotope labeled kinase assay-linked phosphoproteomics. PMID:25022875
Proteogenomic mapping of Mycoplasma hyopneumoniae virulent strain 232. PMID:25005615
Phosphoproteomics combined with quantitative 14-3-3-affinity capture identifies SIRT1 and RAI as novel regulators of cytosolic double-stranded RNA recognition pathway. PMID:24997996
Quantitative mass spectrometry reveals plasticity of metabolic networks in Mycobacterium smegmatis. PMID:24997995
Identification of cardiac myofilament protein isoforms using multiple mass spectrometry based approaches. PMID:24974818
A substrate trapping approach identifies proteins regulated by reversible S-nitrosylation. PMID:24973421
A genomic survey of proteases in Aspergilli. PMID:24965873
Phosphoproteome dynamics in onset and maintenance of oncogene-induced senescence. PMID:24961811
PRIME-XS, a European infrastructure for proteomics. PMID:24958170
Comparative analysis of the secretome from a model filarial nematode (Litomosoides sigmodontis) reveals maximal diversity in gravid female parasites. PMID:24958169
Phosphoproteome profiling of the macrophage response to different toll-like receptor ligands identifies differences in global phosphorylation dynamics. PMID:24941444
Brain proteomics of Anopheles gambiae. PMID:24937107
Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt temperature downshift. PMID:24926786
Alterations in the cerebellar (Phospho)proteome of a cyclic guanosine monophosphate (cGMP)-dependent protein kinase knockout mouse. PMID:24925903
The global phosphoproteome of Chlamydomonas reinhardtii reveals complex organellar phosphorylation in the flagella and thylakoid membrane. PMID:24917610
MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data. PMID:24910945
Biochemical quantitation of the eIF5A hypusination in Arabidopsis thaliana uncovers ABA-dependent regulation. PMID:24904603
Global analysis of muscle-specific kinase signaling by quantitative phosphoproteomics. PMID:24899341
Heterogeneity of pancreatic cancer metastases in a single patient revealed by quantitative proteomics. PMID:24895378
Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions. PMID:24892934
Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L. PMID:24885693
Large-Scale Proteomics of the Cassava Storage Root and Identification of a Target Gene to Reduce Postharvest Deterioration. PMID:24876255
The PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis. PMID:24874799
Quantitative proteomics to characterize specific histone H2A proteolysis in chronic lymphocytic leukemia and the myeloid THP-1 cell line. PMID:24871368
A draft map of the human proteome. PMID:24870542
PIQMIe: a web server for semi-quantitative proteomics data management and analysis. PMID:24861615
Single-step enrichment by Ti4+-IMAC and label-free quantitation enables in-depth monitoring of phosphorylation dynamics with high reproducibility and temporal resolution. PMID:24850871
Proteomics of Fuchs' endothelial corneal dystrophy support that the extracellular matrix of Descemet's membrane is disordered. PMID:24846694
Analyses of the xylem sap proteomes identified candidate Fusarium virguliforme proteinacious toxins. PMID:24845418
Chasing Phosphoarginine Proteins: Development of a Selective Enrichment Method Using a Phosphatase Trap. PMID:24825175
Cell-specific labeling enzymes for analysis of cell-cell communication in continuous co-culture. PMID:24820872
Integrating omics technologies to study pulmonary physiology and pathology at the systems level. PMID:24802001
Spider genomes provide insight into composition and evolution of venom and silk. PMID:24801114
Functional amyloids in the mouse sperm acrosome. PMID:24797071
High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics. PMID:24792668
Trans-spliced heat shock protein 90 modulates encystation in Giardia lamblia. PMID:24786776
An investigation into the protein composition of the teneral Glossina morsitans morsitans peritrophic matrix. PMID:24763256
The histone variant H2A.Bbd is enriched at sites of DNA synthesis. PMID:24753410
Discovery of prognostic biomarker candidates of lacunar infarction by quantitative proteomics of microvesicles enriched plasma. PMID:24752076
The membrane proteome of sensory cilia to the depth of olfactory receptors. PMID:24748648
Quantitative proteomic analysis of oral brush biopsies identifies secretory leukocyte protease inhibitor as a promising, mechanism-based oral cancer biomarker. PMID:24748380
Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness. PMID:24741114
StableIsotope Labeling with Amino Acids in Cell Culture (SILAC)-based strategy for proteome-wide thermodynamic analysis of protein-ligand binding interactions. PMID:24741112
Regulation dynamics of Leishmania differentiation: deconvoluting signals and identifying phosphorylation trends. PMID:24741111
Protein abundance changes and ubiquitylation targets identified after inhibition of the proteasome with syringolin A. PMID:24732913
Proteomics of secretory and endocytic organelles in Giardia lamblia. PMID:24732305
Small cationic antimicrobial peptides delocalize peripheral membrane proteins. PMID:24706874
A peptidomic analysis of human milk digestion in the infant stomach reveals protein-specific degradation patterns. PMID:24699806
Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E)). PMID:24696501
Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray (TMA) analysis. PMID:24687888
Systems biology and proteomic analysis of cerebral cavernous malformation. PMID:24684205
Characterization of individual mouse cerebrospinal fluid proteomes. PMID:24677814
Functional annotation of proteome encoded by human chromosome 22. PMID:24669763
Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas. PMID:24667141
jmzTab: a java interface to the mzTab data standard. PMID:24659499
Multifactorial comparative proteomic study of cytochrome P450 2E1 function in chronic alcohol administration. PMID:24658151
Identification of prosaposin and transgelin as potential biomarkers for gallbladder cancer using quantitative proteomics. PMID:24657443
Cross-species proteomics reveals specific modulation of signaling in cancer and stromal cells by phosphoinositide 3-kinase (PI3K) inhibitors. PMID:24648465
The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts. PMID:24641125
Bottom-up and shotgun proteomics to identify a comprehensive cochlear proteome. PMID:24638115
Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics. PMID:24623587
Kinetic analysis of mouse brain proteome alterations following Chikungunya virus infection before and after appearance of clinical symptoms. PMID:24618821
Signatures for mass spectrometry data quality. PMID:24611607
The yeast Sks1p kinase signaling network regulates pseudohyphal growth and glucose response. PMID:24603354
Effects of blood contamination and the rostro-caudal gradient on the human cerebrospinal fluid proteome. PMID:24599184
Tousled-like kinases phosphorylate Asf1 to promote histone supply during DNA replication. PMID:24598821
Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt downshift in water activity. PMID:24594867
Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics. PMID:24591515
A partial proteome reference map of the wine lactic acid bacterium Oenococcus oeni ATCC BAA-1163. PMID:24573368
The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again. PMID:24564732
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. PMID:24564249
Proteomic analysis of arginine methylation sites in human cells reveals dynamic regulation during transcriptional arrest. PMID:24563534
Pathogens and host immunity in the ancient human oral cavity. PMID:24562188
Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome. PMID:24555563
On the extent and role of the small proteome in the parasitic eukaryote Trypanosoma brucei. PMID:24552149
Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium. PMID:24549289
Proteomics of a fuzzy organelle: interphase chromatin. PMID:24534090
The acute transcriptomic and proteomic response of HC-04 hepatoma cells to hepatocyte growth factor and its implications for Plasmodium falciparum sporozoite invasion. PMID:24532842
Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination. PMID:24532841
Post-transcriptional regulation of human breast cancer cell proteome by unliganded estrogen receptor β via microRNAs. PMID:24525454
Quantitative phosphoproteomics unveils temporal dynamics of thrombin signaling in human endothelial cells. PMID:24501219
Differentially expressed proteins in malignant and benign adrenocortical tumors. PMID:24498411
Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae. PMID:24489116
Combined proteomic and transcriptomic interrogation of the venom gland of Conus geographus uncovers novel components and functional compartmentalization. PMID:24478445
Toward more transparent and reproducible omics studies through a common metadata checklist and data publications. PMID:24456465
The RNA chaperone Hfq impacts growth, metabolism and production of virulence factors in Yersinia enterocolitica. PMID:24454955
Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. PMID:24443746
Glomerular cell cross-talk influences composition and assembly of extracellular matrix. PMID:24436469
Environmental stress affects the activity of metabolic and growth factor signaling networks and induces autophagy markers in MCF7 breast cancer cells. PMID:24425749
Dynamic regulation of the COP9 signalosome in response to DNA damage. PMID:24421388
Golgi enrichment and proteomic analysis of developing Pinus radiata xylem by free-flow electrophoresis. PMID:24416096
Phosphoproteomic analysis of platelets activated by pro-thrombotic oxidized phospholipids and thrombin. PMID:24400094
Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation. PMID:24396086
In-vivo quantitative proteomics reveals a key contribution of post-transcriptional mechanisms to the circadian regulation of liver metabolism. PMID:24391516
Managing the green proteomes for the next decade of plant research. PMID:24379820
Proteome screening of pleural effusions identifies galectin 1 as a diagnostic biomarker and highlights several prognostic biomarkers for malignant mesothelioma. PMID:24361865
Discovery of novel disease-specific and membrane-associated candidate markers in a mouse model of multiple sclerosis. PMID:24361864
Neurobiological signatures of alcohol dependence revealed by protein profiling. PMID:24358215
The potato tuber mitochondrial proteome. PMID:24351685
MOPED enables discoveries through consistently processed proteomics data. PMID:24350770
Linkage of oxidative stress and mitochondrial dysfunctions to spontaneous culture degeneration in Aspergillus nidulans. PMID:24345786
OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants. PMID:24341908
Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics. PMID:24336358
Proteome and phosphoproteome characterization reveals new response and defense mechanisms of Brachypodium distachyon leaves under salt stress. PMID:24335353
Insight into protein S-nitrosylation in Chlamydomonas reinhardtii. PMID:24328795
Genotoxic stress prevents Ndd1-dependent transcriptional activation of G2/M-specific genes in Saccharomyces cerevisiae. PMID:24324010
Global analysis of cdc14 dephosphorylation sites reveals essential regulatory role in mitosis and cytokinesis. PMID:24319056
Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. PMID:24317253
Proteomics quality and standard: from a regulatory perspective. PMID:24316359
Identification and monitoring of host cell proteins by mass spectrometry combined with high performance immunochemistry testing. PMID:24312330
Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy. PMID:24312219
A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor. PMID:24312217
Proteome-wide enrichment of proteins modified by lysine methylation. PMID:24309976
Plasma Proteome Database as a resource for proteomics research: 2014 update. PMID:24304897
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. PMID:24304889
Comparison of two phenotypically distinct lattice corneal dystrophies caused by mutations in the transforming growth factor beta induced (TGFBI) gene. PMID:24302499
Accurate label-free protein quantitation with high- and low-resolution mass spectrometers. PMID:24295401
Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation. PMID:24289286
Phycobilisomes supply excitations to both photosystems in a megacomplex in cyanobacteria. PMID:24288334
A perspective on proteomics in cell biology. PMID:24284280
Time-resolved analysis of the matrix metalloproteinase 10 substrate degradome. PMID:24281761
The European Bioinformatics Institute's data resources 2014. PMID:24271396
Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis. PMID:24268774
Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum. PMID:24267660
Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based proteomics. PMID:24267406
Updates to BioSamples database at European Bioinformatics Institute. PMID:24265224
Quantitative phosphoproteomics reveals the role of protein arginine phosphorylation in the bacterial stress response. PMID:24263382
Metastatic castration-resistant prostate cancer reveals intrapatient similarity and interpatient heterogeneity of therapeutic kinase targets. PMID:24248375
PATRIC, the bacterial bioinformatics database and analysis resource. PMID:24225323
Mercury alters B-cell protein phosphorylation profiles. PMID:24224561
Quantitative phosphoproteome analysis unveils LAT as a modulator of CD3ζ and ZAP-70 tyrosine phosphorylation. PMID:24204825
Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP). PMID:24201379
Granzyme M targets topoisomerase II alpha to trigger cell cycle arrest and caspase-dependent apoptosis. PMID:24185622
The pancreatic expression database: recent extensions and updates. PMID:24163255
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. PMID:24157837
Parallel deep transcriptome and proteome analysis of zebrafish larvae. PMID:24156766
A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation. PMID:24156278
Integrated transcriptomic and proteomic analysis of the global response of Wolbachia to doxycycline-induced stress. PMID:24152719
DNA repair in Mycoplasma gallisepticum. PMID:24148612
Reconstructing targetable pathways in lung cancer by integrating diverse omics data. PMID:24135919
Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga. PMID:24127907
The Aeromonas salmonicida subsp. salmonicida exoproteome: global analysis, moonlighting proteins and putative antigens for vaccination against furunculosis. PMID:24127837
Proteomic profiling of serum samples from chikungunya-infected patients provides insights into host response. PMID:24124767
Identification of downstream components of ubiquitin-conjugating enzyme PHOSPHATE2 by quantitative membrane proteomics in Arabidopsis roots. PMID:24122829
Guidelines for the design, analysis and interpretation of 'omics' data: focus on human endometrium. PMID:24082038
Comprehensive cell-specific protein analysis in early and late pollen development from diploid microsporocytes to pollen tube growth. PMID:24078888
Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius. PMID:24078887
The Aeromonas salmonicida subsp. salmonicida exoproteome: determination of the complete repertoire of Type-Three Secretion System effectors and identification of other virulence factors. PMID:24073886
Salinity-induced regulation of the myo-inositol biosynthesis pathway in tilapia gill epithelium. PMID:24072791
Ratiometric Measurements of Adiponectin by Mass Spectrometry in Bottlenose Dolphins (Tursiops truncatus) with Iron Overload Reveal an Association with Insulin Resistance and Glucagon. PMID:24065958
Quantitative molecular phenotyping of gill remodeling in a cichlid fish responding to salinity stress. PMID:24065692
Protein synthesis rate is the predominant regulator of protein expression during differentiation. PMID:24045637
Vascular endothelial growth factor (VEGF) and platelet (PF-4) factor 4 inputs modulate human microvascular endothelial signaling in a three-dimensional matrix migration context. PMID:24023389
Glycoproteome of elongating cotton fiber cells. PMID:24019148
New Arabidopsis thaliana cytochrome c partners: a look into the elusive role of cytochrome c in programmed cell death in plants. PMID:24019145
Proteomic analysis of human dental cementum and alveolar bone. PMID:24007660
Host-centric proteomics of stool: a novel strategy focused on intestinal responses to the gut microbiota. PMID:23982161
SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers. PMID:23979707
A fast Peptide Match service for UniProt Knowledgebase. PMID:23958731
The human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor. PMID:23948706
Selective targeting of the cysteine proteome by thioredoxin and glutathione redox systems. PMID:23946468
Proteomic analysis of signaling network regulation in renal cell carcinomas with differential hypoxia-inducible factor-2α expression. PMID:23940778
Identification of proteins enriched in rice egg or sperm cells by single-cell proteomics. PMID:23936051
Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators. PMID:23921659
Unique features of a Pseudomonas aeruginosa α2-macroglobulin homolog. PMID:23919994
Interrogating cAMP-dependent kinase signaling in Jurkat T cells via a protein kinase A targeted immune-precipitation phosphoproteomics approach. PMID:23882029
Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer. PMID:23868472
Determination of an angiotensin II-regulated proteome in primary human kidney cells by stable isotope labeling of amino acids in cell culture (SILAC). PMID:23846697
Studies of mucus in mouse stomach, small intestine, and colon. II. Gastrointestinal mucus proteome reveals Muc2 and Muc5ac accompanied by a set of core proteins. PMID:23832517
Systems-level overview of host protein phosphorylation during Shigella flexneri infection revealed by phosphoproteomics. PMID:23828894
Systematic Analysis Reveals Elongation Factor 2 and α-Enolase as Novel Interaction Partners of AKT2. PMID:23823123
A Candida albicans PeptideAtlas. PMID:23811049
Mapping gene activity of Arabidopsis root hairs. PMID:23800126
A meta-analysis of the genomic and transcriptomic composition of complex life. PMID:23759593
The functional interactome landscape of the human histone deacetylase family. PMID:23752268
Spatial reorganization of Saccharomyces cerevisiae enolase to alter carbon metabolism under hypoxia. PMID:23748432
Stepwise evolution of essential centromere function in a Drosophila neogene. PMID:23744945
A possible approach for gel-based proteomic studies in recalcitrant woody plants. PMID:23724367
Profiling protein kinases and other ATP binding proteins in Arabidopsis using Acyl-ATP probes. PMID:23722185
In-depth proteomic analysis of mouse cochlear sensory epithelium by mass spectrometry. PMID:23721421
Review of software tools for design and analysis of large scale MRM proteomic datasets. PMID:23702368
Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3. PMID:23630285
Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors. PMID:23628362
Identifying sources of tick blood meals using unidentified tandem mass spectral libraries. PMID:23612287
Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis. PMID:23548781
From Peptidome to PRIDE: public proteomics data migration at a large scale. PMID:23533138
Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes. PMID:23508102
Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective. PMID:23467006
Proteomic differences between hepatocellular carcinoma and nontumorous liver tissue investigated by a combined gel-based and label-free quantitative proteomics study. PMID:23462207
A chemical proteomics approach to profiling the ATP-binding proteome of Mycobacterium tuberculosis. PMID:23462205
PRIDE: the proteomics identifications database PubMed citations: 187.

187 articles citing: PRIDE: the proteomics identifications database

Towards 'end-to-end' analysis and understanding of biological timecourse data. PMID:35713413
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. PMID:35640880
Middle-down approach: a choice to sequence and characterize proteins/proteomes by mass spectrometry. PMID:35521579
Fluxomics - New Metabolomics Approaches to Monitor Metabolic Pathways. PMID:35387341
The impact of noise and missing fragmentation cleavages on de novo peptide identification algorithms. PMID:35386104
Auxiliary ATP binding sites support DNA unwinding by RecBCD. PMID:35379800
Toward Zero Variance in Proteomics Sample Preparation: Positive-Pressure FASP in 96-Well Format (PF96) Enables Highly Reproducible, Time- and Cost-Efficient Analysis of Sample Cohorts. PMID:35316605
Dissecting Plasmodium yoelii Pathobiology: Proteomic Approaches for Decoding Novel Translational and Post-Translational Modifications. PMID:35309442
Review of Liquid Chromatography-Mass Spectrometry-Based Proteomic Analyses of Body Fluids to Diagnose Infectious Diseases. PMID:35216306
Deepening into Intracellular Signaling Landscape through Integrative Spatial Proteomics and Transcriptomics in a Lymphoma Model. PMID:34944421
KAT6A and ENL Form an Epigenetic Transcriptional Control Module to Drive Critical Leukemogenic Gene-Expression Programs. PMID:34853079
DeepLC can predict retention times for peptides that carry as-yet unseen modifications. PMID:34711972
A Novel Approach for the Discovery of Biomarkers of Radiotherapy Response in Breast Cancer. PMID:34442440
Quantitative Tyrosine Phosphoproteome Profiling of AXL Receptor Tyrosine Kinase Signaling Network. PMID:34439388
Advances in the computational landscape for repurposed drugs against COVID-19. PMID:34339864
Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748
Dnmt1 has de novo activity targeted to transposable elements. PMID:34140676
Defective metabolic programming impairs early neuronal morphogenesis in neural cultures and an organoid model of Leigh syndrome. PMID:33771987
Proteomic Profiling and Artificial Intelligence for Hepatocellular Carcinoma Translational Medicine. PMID:33562077
Plasma-MDS, a metadata schema for plasma science with examples from plasma technology. PMID:33335096
The Protein-Protein Interaction Network Reveals a Novel Role of the Signal Transduction Protein PII in the Control of c-di-GMP Homeostasis in Azospirillum brasilense. PMID:33144311
Cell autonomous requirement of neurofibromin (Nf1) for postnatal muscle hypertrophic growth and metabolic homeostasis. PMID:33078583
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. PMID:32931287
Depolarization-dependent Induction of Site-specific Changes in Sialylation on N-linked Glycoproteins in Rat Nerve Terminals. PMID:32518069
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
A Small Effort for Researchers, a Big Gain for Soil Metaproteomics. PMID:32117118
3D mapping of native extracellular matrix reveals cellular responses to the microenvironment. PMID:32055794
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets. PMID:31956905
Dynamic proteome profiling of human pluripotent stem cell-derived pancreatic progenitors. PMID:31828876
Strategies for the Identification of Bioactive Neuropeptides in Vertebrates. PMID:31619945
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. PMID:31599596
Mutations in NDUFS1 Cause Metabolic Reprogramming and Disruption of the Electron Transfer. PMID:31557978
RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation. PMID:31504767
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. PMID:31430157
Mass spectrometry-based proteomic techniques to identify cerebrospinal fluid biomarkers for diagnosing suspected central nervous system infections. A systematic review. PMID:31404562
S-acylated Golga7b stabilises DHHC5 at the plasma membrane to regulate cell adhesion. PMID:31402609
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. PMID:31290668
MassComp, a lossless compressor for mass spectrometry data. PMID:31262247
Updated MS²PIP web server delivers fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques. PMID:31028400
Pixel: a content management platform for quantitative omics data. PMID:30944779
Proteomic characterization of the arsenic response locus in S. cerevisiae. PMID:30739529
Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. PMID:30702898
Leveraging Multilayered "Omics" Data for Atopic Dermatitis: A Road Map to Precision Medicine. PMID:30631320
Artificial Intelligence Understands Peptide Observability and Assists With Absolute Protein Quantification. PMID:30483279
Novel protein signatures suggest progression to muscular invasiveness in bladder cancer. PMID:30419021
The PRIDE database and related tools and resources in 2019: improving support for quantification data. PMID:30395289
The Anemonia viridis Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research. PMID:30366463
Expanding the Use of Spectral Libraries in Proteomics. PMID:30270626
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial. PMID:30104418
Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics. PMID:29900110
Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship. PMID:29626081
Novel proteins from proteomic analysis of the trunk disease fungus Lasiodiplodia theobromae (Botryosphaeriaceae). PMID:29450146
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. PMID:29440222
Immunomodulatory Effects of Amblyomma variegatum Saliva on Bovine Cells: Characterization of Cellular Responses and Identification of Molecular Determinants. PMID:29354598
MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go. PMID:29215871
Increased herpes zoster risk associated with poor HLA-A immediate early 62 protein (IE62) affinity. PMID:29196796
An update on sORFs.org: a repository of small ORFs identified by ribosome profiling. PMID:29140531
Native KCC2 interactome reveals PACSIN1 as a critical regulator of synaptic inhibition. PMID:29028184
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics. PMID:28691345
Characterisation of the circulating acellular proteome of healthy sheep using LC-MS/MS-based proteomics analysis of serum. PMID:28615994
Data from proteome analysis of Lasiodiplodia theobromae (Botryosphaeriaceae). PMID:28580409
Firmiana: towards a one-stop proteomic cloud platform for data processing and analysis. PMID:28486446
ImmunoNodes - graphical development of complex immunoinformatics workflows. PMID:28482806
Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co-Occurring Protein Pairs. PMID:28480704
Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress. PMID:28232487
A Golden Age for Working with Public Proteomics Data. PMID:28118949
The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5. PMID:27741559
The Salivary Protein Repertoire of the Polyphagous Spider Mite Tetranychus urticae: A Quest for Effectors. PMID:27703040
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. PMID:27504778
The Exposed Proteomes of Brachyspira hyodysenteriae and B. pilosicoli. PMID:27493641
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. PMID:27490519
Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria. PMID:27233093
NMDA receptors are selectively partitioned into complexes and supercomplexes during synapse maturation. PMID:27117477
Positional proteomics reveals differences in N-terminal proteoform stability. PMID:26893308
Antiviral innate immunity through the lens of systems biology. PMID:26657882
Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation. PMID:26560066
sORFs.org: a repository of small ORFs identified by ribosome profiling. PMID:26527729
2016 update of the PRIDE database and its related tools. PMID:26527722
Exploring the potential of public proteomics data. PMID:26449181
Data integration in biological research: an overview. PMID:26336651
Integrated visual analysis of protein structures, sequences, and feature data. PMID:26329268
MI-PVT: A Tool for Visualizing the Chromosome-Centric Human Proteome. PMID:26204236
A deeper look into Comet--implementation and features. PMID:26115965
From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics. PMID:26002791
Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists. PMID:25983554
Current strategies and findings in clinically relevant post-translational modification-specific proteomics. PMID:25955281
Introducing the PRIDE Archive RESTful web services. PMID:25904633
Development of data representation standards by the human proteome organization proteomics standards initiative. PMID:25726569
YPED: an integrated bioinformatics suite and database for mass spectrometry-based proteomics research. PMID:25712262
PeptideShaker enables reanalysis of MS-derived proteomics data sets. PMID:25574629
Decoding neuroproteomics: integrating the genome, translatome and functional anatomy. PMID:25349915
Exploring the human plasma proteome for humoral mediators of remote ischemic preconditioning--a word of caution. PMID:25333471
A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites. PMID:25156699
In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR). PMID:25038066
Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics. PMID:24939129
Nanoinformatics knowledge infrastructures: bringing efficient information management to nanomedical research. PMID:24932210
Early targets of miR-34a in neuroblastoma. PMID:24912852
Integrating omics technologies to study pulmonary physiology and pathology at the systems level. PMID:24802001
Using systems biology approaches to understand cardiac inflammation and extracellular matrix remodeling in the setting of myocardial infarction. PMID:24741709
ProteomeXchange provides globally coordinated proteomics data submission and dissemination. PMID:24727771
Translational research platforms integrating clinical and omics data: a review of publicly available solutions. PMID:24608524
Targeted proteomics reveals strain-specific changes in the mouse insulin and central metabolic pathways after a sustained high-fat diet. PMID:23860498
Functional classification of cellular proteome profiles support the identification of drug resistance signatures in melanoma cells. PMID:23713901
Review of software tools for design and analysis of large scale MRM proteomic datasets. PMID:23702368
Proteome-derived peptide libraries to study the substrate specificity profiles of carboxypeptidases. PMID:23620545
Pride-asap: automatic fragment ion annotation of identified PRIDE spectra. PMID:23603108
Protein-protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches. PMID:23579629
Proteomic survey of the Streptomyces coelicolor nucleoid. PMID:23523638
Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective. PMID:23467006
Context-sensitive markov models for peptide scoring and identification from tandem mass spectrometry. PMID:23289783
Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium. PMID:23249167
The state of the human proteome in 2012 as viewed through PeptideAtlas. PMID:23215161
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013. PMID:23203882
LNCipedia: a database for annotated human lncRNA transcript sequences and structures. PMID:23042674
File formats commonly used in mass spectrometry proteomics. PMID:22956731
Inference and validation of protein identifications. PMID:22865921
Proteomics and systems biology for understanding diabetic nephropathy. PMID:22581264
PRODIS: a proteomics data management system with support to experiment tracking. PMID:22369043
Targeted proteomics of the eicosanoid biosynthetic pathway completes an integrated genomics-proteomics-metabolomics picture of cellular metabolism. PMID:22361236
PASSEL: the PeptideAtlas SRMexperiment library. PMID:22318887
Analysis of high accuracy, quantitative proteomics data in the MaxQB database. PMID:22301388
The impact of CodY on virulence determinant production in community-associated methicillin-resistant Staphylococcus aureus. PMID:22106056
Estimation of absolute protein quantities of unlabeled samples by selected reaction monitoring mass spectrometry. PMID:22101334
Proteomics and pluripotency. PMID:21999516
The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards. PMID:21983993
jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions. PMID:21967198
Biobank resources for future patient care: developments, principles and concepts. PMID:21923917
Building and searching tandem mass spectral libraries for peptide identification. PMID:21900153
The human proteome project: current state and future direction. PMID:21742803
Spectral archives: a vision for future proteomics data repositories. PMID:21716282
Arabidopsis plasmodesmal proteome. PMID:21533090
Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions. PMID:21386900
Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase. PMID:21383206
Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates. PMID:21349178
Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains. PMID:21266995
Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase. PMID:21122111
A large-scale electrophoresis- and chromatography-based determination of gene expression profiles in bovine brain capillary endothelial cells after the re-induction of blood-brain barrier properties. PMID:21078152
Challenges of molecular nutrition research 6: the nutritional phenotype database to store, share and evaluate nutritional systems biology studies. PMID:21052526
Generating and navigating proteome maps using mass spectrometry. PMID:20944666
Shotgun proteomic analysis of Emiliania huxleyi, a marine phytoplankton species of major biogeochemical importance. PMID:20924652
In silico models of cancer. PMID:20836040
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics. PMID:20816881
mzML--a community standard for mass spectrometry data. PMID:20716697
Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research. PMID:20615486
Proteomics of plant pathogenic fungi. PMID:20589070
Omics.pnl.gov: A Portal for the Distribution and Sharing of Multi-Disciplinary Pan-Omics Information. PMID:20585472
Proteomics-based systems biology modeling of bovine germinal vesicle stage oocyte and cumulus cell interaction. PMID:20574525
Complementary positional proteomics for screening substrates of endo- and exoproteases. PMID:20526345
An expanded Oct4 interaction network: implications for stem cell biology, development, and disease. PMID:20362542
A guided tour of the Trans-Proteomic Pipeline. PMID:20101611
Identifying blood biomarkers and physiological processes that distinguish humans with superior performance under psychological stress. PMID:20020041
The PeptideAtlas Project. PMID:20013378
Systems biology of embryogenesis. PMID:20003850
The Proteomics Identifications database: 2010 update. PMID:19906717
PeptideDepot: flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information. PMID:19834895
Proteomics data repositories. PMID:19795424
Recent de novo origin of human protein-coding genes. PMID:19726446
A guide to the Proteomics Identifications Database proteomics data repository. PMID:19662629
Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry. PMID:19608599
PRIDE Converter: making proteomics data-sharing easy. PMID:19587657
Challenges, current status and future perspectives of proteomics in improving understanding, diagnosis and treatment of vascular disease. PMID:19541510
A HUPO test sample study reveals common problems in mass spectrometry-based proteomics. PMID:19448641
Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans. PMID:19420222
MRM screening/biomarker discovery with linear ion trap MS: a library of human cancer-specific peptides. PMID:19327145
Quantitative interaction proteomics using mass spectrometry. PMID:19198594
Human Proteinpedia: a unified discovery resource for proteomics research. PMID:18948298
Translational bioinformatics: coming of age. PMID:18755990
Comparative proteomics of chloroplast envelopes from C3 and C4 plants reveals specific adaptations of the plastid envelope to C4 photosynthesis and candidate proteins required for maintaining C4 metabolite fluxes. PMID:18599648
The EXACT description of biomedical protocols. PMID:18586727
Human Proteinpedia as a resource for clinical proteomics. PMID:18573810
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. PMID:18451766
Comprehensive proteomic analysis of bovine spermatozoa of varying fertility rates and identification of biomarkers associated with fertility. PMID:18294385
PRIDE: new developments and new datasets. PMID:18033805
Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome. PMID:18021451
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. PMID:17945017
MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data. PMID:17567892
From bytes to bedside: data integration and computational biology for translational cancer research. PMID:17319736
An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ. PMID:17270041
Human body fluid proteome analysis. PMID:17083142
AgBase: a functional genomics resource for agriculture. PMID:16961921
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. PMID:16784548
2DDB - a bioinformatics solution for analysis of quantitative proteomics data. PMID:16549013
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. PMID:16507094
PRIDE: a public repository of protein and peptide identifications for the proteomics community. PMID:16381953
PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns. PMID:16381951
Human protein reference database--2006 update. PMID:16381900