Bacterial Protein Interaction Database

Names

More detailed information about this field from each metasource. ×

Bacterial Protein Interaction Database

metasource: Fairsharing.org
version: FAIRsharing.org: Bacteriome.org; Bacterial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.mx5cxe; Last edited: April 26, 2021, 3:56 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: re3data.org
version: re3data.org: Bacteriome.org; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35R5T last accessed: 2022-11-04

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Bacteriome.org

metasource: Fairsharing.org
version: FAIRsharing.org: Bacteriome.org; Bacterial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.mx5cxe; Last edited: April 26, 2021, 3:56 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: re3data.org
version: re3data.org: Bacteriome.org; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35R5T last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:02.138917

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bacteriome.org

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:02.138917

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Other names: Bacteriome.org, bacteriome.org

Bacteriome.org is a database integrating physical (protein-protein) and functional interactions within the context of an E. coli knowledgebase.

Webpage:

Licence:

Publications:

Publications

More detailed information about this field from each metasource. ×

Bacteriome.org--an integrated protein interaction database for E. coli
PMID: 17942431

metasource: Fairsharing.org
version: FAIRsharing.org: Bacteriome.org; Bacterial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.mx5cxe; Last edited: April 26, 2021, 3:56 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:02.138917

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• Bacteriome.org--an integrated protein interaction database for E. coli PubMed citations: 18.

  18 articles citing: Bacteriome.org--an integrated protein interaction database for E. coli

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  Machine-learning techniques for the prediction of protein-protein interactions. PMID:31502581

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  Grasping frequent subgraph mining for bioinformatics applications. PMID:30202444

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  A coevolution analysis for identifying protein-protein interactions by Fourier transform. PMID:28430779

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  Prediction of Intra-Species Protein-Protein Interactions in Enteropathogens Facilitating Systems Biology Study. PMID:26717407

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  Evolution of Macromolecular Docking Techniques: The Case Study of Nickel and Iron Metabolism in Pathogenic Bacteria. PMID:26251891

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  A reproducible approach to high-throughput biological data acquisition and integration. PMID:26157642

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  Databases for Microbiologists. PMID:26013493

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  Matching cross-linked peptide spectra: only as good as the worse identification. PMID:24335475

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  Utilization of multiple "omics" studies in microbial pathogeny for microbiology insights. PMID:23620861

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  Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions. PMID:23157382

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  Identification of cross-linked peptides from complex samples. PMID:22772728

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  Architecture and conservation of the bacterial DNA replication machinery, an underexploited drug target. PMID:22206257

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  Cross-linking measurements of in vivo protein complex topologies. PMID:21697552

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  The extinction dynamics of bacterial pseudogenes. PMID:20700439

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  Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase. PMID:19917103

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  The Modular Organization of Protein Interactions in Escherichia coli. PMID:19798435

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  Bacillus subtilis polynucleotide phosphorylase 3'-to-5' DNase activity is involved in DNA repair. PMID:19433509

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  EcID. A database for the inference of functional interactions in E. coli. PMID:19004873

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More detailed information about this field from each metasource. ×

molecular interaction

metasource: Fairsharing.org
version: FAIRsharing.org: Bacteriome.org; Bacterial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.mx5cxe; Last edited: April 26, 2021, 3:56 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

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network model

metasource: Fairsharing.org
version: FAIRsharing.org: Bacteriome.org; Bacterial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.mx5cxe; Last edited: April 26, 2021, 3:56 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

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protein

metasource: Fairsharing.org
version: FAIRsharing.org: Bacteriome.org; Bacterial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.mx5cxe; Last edited: April 26, 2021, 3:56 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

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protein interaction

metasource: Fairsharing.org
version: FAIRsharing.org: Bacteriome.org; Bacterial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.mx5cxe; Last edited: April 26, 2021, 3:56 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

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metabolic and signaling pathways

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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protein-protein interactions

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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ppi protein-protein interaction

metasource: re3data.org
version: re3data.org: Bacteriome.org; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35R5T last accessed: 2022-11-04

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bacterial infections

metasource: re3data.org
version: re3data.org: Bacteriome.org; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35R5T last accessed: 2022-11-04

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escherichia coli e.coli

metasource: re3data.org
version: re3data.org: Bacteriome.org; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35R5T last accessed: 2022-11-04

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genetics

metasource: re3data.org
version: re3data.org: Bacteriome.org; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35R5T last accessed: 2022-11-04

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genomics

metasource: re3data.org
version: re3data.org: Bacteriome.org; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35R5T last accessed: 2022-11-04

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gram-negative bacteria

metasource: re3data.org
version: re3data.org: Bacteriome.org; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35R5T last accessed: 2022-11-04

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protein interactions

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:02.138917

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:02.138917

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protein interaction experiment

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:02.138917

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proteomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:02.138917

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:02.138917

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molecular interaction network model protein protein interaction metabolic and signaling pathways protein-protein interactions ppi protein-protein interaction bacterial infections escherichia coli e.coli genetics genomics gram-negative bacteria protein interaction molecular interactions, pathways and networks protein interaction experiment proteomics proteins