SpliceAid

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SpliceAid

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:36.744431

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spliceaid

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:36.744431

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Other names: spliceaid

Experimental RNA target motifs bound by splicing proteins in humans.

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Publications

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SpliceAid: a database of experimental RNA target motifs bound by splicing proteins in humans
PMID: 19261717

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:36.744431

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• SpliceAid: a database of experimental RNA target motifs bound by splicing proteins in humans PubMed citations: 50.

  50 articles citing: SpliceAid: a database of experimental RNA target motifs bound by splicing proteins in humans

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  Nuclear Aurora kinase A switches m6A reader YTHDC1 to enhance an oncogenic RNA splicing of tumor suppressor RBM4. PMID:35361747

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  A Novel, Apparently Silent Variant in MFSD8 Causes Neuronal Ceroid Lipofuscinosis with Marked Intrafamilial Variability. PMID:35216386

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  Novel Mutations of TSPY1 Gene Associate Spermatogenic Failure Among Men. PMID:35041134

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  Novel variations in spermatogenic transcription regulators RFX2 and TAF7 increase risk of azoospermia. PMID:34762273

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  Ral GEF with the PH Domain and SH3 Binding Motif 1 Regulated by Splicing Factor Junction Plakoglobin and Pyrimidine Metabolism Are Prognostic in Uterine Carcinosarcoma. PMID:34745385

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  Functional Characteristics and Regulated Expression of Alternatively Spliced Tissue Factor: An Update. PMID:34572880

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  What's Wrong in a Jump? Prediction and Validation of Splice Site Variants. PMID:34564308

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  Identification of prognostic and bone metastatic alternative splicing signatures in bladder cancer. PMID:34402716

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  IntSplice2: Prediction of the Splicing Effects of Intronic Single-Nucleotide Variants Using LightGBM Modeling. PMID:34349788

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  Dissection of pleiotropic effects of variants in and adjacent to F8 exon 19 and rescue of mRNA splicing and protein function. PMID:34242570

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  Identification of prognostic and bone metastasis-related alternative splicing signatures in mesothelioma. PMID:34041868

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  Antisense oligonucleotide-based treatment of retinitis pigmentosa caused by USH2A exon 13 mutations. PMID:33895329

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  Proof-of-Concept: Antisense Oligonucleotide Mediated Skipping of Fibrillin-1 Exon 52. PMID:33801742

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  A cryptic splice-altering KCNQ1 variant in trans with R259L leading to Jervell and Lange-Nielsen syndrome. PMID:33664273

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  Identification of prognostic alternative splicing signatures in uveal melanoma. PMID:33479809

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  Comprehensive Analysis of Alternative Splicing Signature in Gastric Cancer Prognosis Based on The Cancer Genome Atlas (TCGA) and SpliceSeq Databases. PMID:33219199

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  Splicing Characteristics of Dystrophin Pseudoexons and Identification of a Novel Pathogenic Intronic Variant in the DMD Gene. PMID:33050418

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  Transcriptome-wide analysis and modelling of prognostic alternative splicing signatures in invasive breast cancer: a prospective clinical study. PMID:33020551

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  A Splice Intervention Therapy for Autosomal Recessive Juvenile Parkinson's Disease Arising from Parkin Mutations. PMID:33019779

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  The Construction of Bone Metastasis-Specific Prognostic Model and Co-expressed Network of Alternative Splicing in Breast Cancer. PMID:32984314

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  Alternative splicing reverses the cell-intrinsic and cell-extrinsic pro-oncogenic potentials of YAP1. PMID:32763976

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  Identification of prognostic and metastasis-related alternative splicing signatures in hepatocellular carcinoma. PMID:32627826

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  Splice modulating antisense oligonucleotides restore some acid-alpha-glucosidase activity in cells derived from patients with late-onset Pompe disease. PMID:32317649

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  Proteomics-Based Characterization of miR-574-5p Decoy to CUGBP1 Suggests Specificity for mPGES-1 Regulation in Human Lung Cancer Cells. PMID:32231562

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  Germ Cell-Specific Gene 1-Like Protein Regulated by Splicing Factor CUGBP Elav-Like Family Member 5 and Primary Bile Acid Biosynthesis are Prognostic in Glioblastoma Multiforme. PMID:32117422

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  De novo variants in exomes of congenital heart disease patients identify risk genes and pathways. PMID:31941532

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  Transcriptome analysis reveals significant differences between primary plasma cell leukemia and multiple myeloma even when sharing a similar genetic background. PMID:31748515

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  Identification of Prognostic and Metastatic Alternative Splicing Signatures in Kidney Renal Clear Cell Carcinoma. PMID:31681747

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  Reduction of integrin alpha 4 activity through splice modulating antisense oligonucleotides. PMID:31506448

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  Emerging Biomarkers in Bladder Cancer Identified by Network Analysis of Transcriptomic Data. PMID:30370253

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  Alternative Splicing of FOXP3-Virtue and Vice. PMID:29593749

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  An intronic VNTR affects splicing of ABCA7 and increases risk of Alzheimer's disease. PMID:29589097

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  Human NDE1 splicing and mammalian brain development. PMID:28266585

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  How is Herstatin, a tumor suppressor splice variant of the oncogene HER2, regulated? PMID:27935425

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  IntSplice: prediction of the splicing consequences of intronic single-nucleotide variations in the human genome. PMID:27009626

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  NPHS2 mutations account for only 15% of nephrotic syndrome cases. PMID:26420286

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  Deciphering targeting rules of splicing modulator compounds: case of TG003. PMID:26400733

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  Rectifier of aberrant mRNA splicing recovers tRNA modification in familial dysautonomia. PMID:25675486

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  Association of CHRDL1 mutations and variants with X-linked megalocornea, Neuhäuser syndrome and central corneal thickness. PMID:25093588

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  A novel splicing silencer generated by DMD exon 45 deletion junction could explain upstream exon 44 skipping that modifies dystrophinopathy. PMID:24871807

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  Identification of cis-acting elements and splicing factors involved in the regulation of BIM Pre-mRNA splicing. PMID:24743263

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  Sporadic cerebral cavernous malformations: report of further mutations of CCM genes in 40 Italian patients. PMID:24058906

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  RRP1B is a metastasis modifier that regulates the expression of alternative mRNA isoforms through interactions with SRSF1. PMID:23604122

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  Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR). PMID:23474544

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  Multiple regulatory variants modulate expression of 5-hydroxytryptamine 2A receptors in human cortex. PMID:23158458

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  SpliceAid-F: a database of human splicing factors and their RNA-binding sites. PMID:23118479

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  Chemical treatment enhances skipping of a mutated exon in the dystrophin gene. PMID:21556062

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  An intronic mutation in MLH1 associated with familial colon and breast cancer. PMID:20717847

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  Computational identification of tissue-specific alternative splicing elements in mouse genes from RNA-Seq. PMID:20685814

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  Fine-scale variation and genetic determinants of alternative splicing across individuals. PMID:20011102

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nucleic acid sites, features and motifs

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:36.744431

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gene structure

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:36.744431

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:36.744431

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sequence sites, features and motifs

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:36.744431

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nucleic acid sites, features and motifs gene structure proteins sequence sites, features and motifs