Termini-Oriented Protein Function INferred Database
Names
More detailed information about this field from each metasource.
Termini-Oriented Protein Function INferred Database
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
TopFIND
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
Termini oriented protein Function Inferred Database
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
topfind
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
Names
More detailed information about this field from each metasource.
Termini-Oriented Protein Function INferred Database
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
TopFIND
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
Termini oriented protein Function Inferred Database
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
topfind
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.896536
Other names: TopFIND, Termini oriented protein Function Inferred Database, topfind
Names
More detailed information about this field from each metasource.
Termini-Oriented Protein Function INferred Database
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
TopFIND
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
Termini oriented protein Function Inferred Database
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
topfind
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.896536
The Termini-Oriented Protein Function INferred Database (TopFIND) is an integrated knowledgebase focused on protein termini, their formation by proteases and functional implications. It contains information about the processing and the processing state of proteins and functional implications thereof derived from research literature, contributions by the scientific community and biological databases.
Description
More detailed information about this field from each metasource.
The Termini-Oriented Protein Function INferred Database (TopFIND) is an integrated knowledgebase focused on protein termini, their formation by proteases and functional implications. It contains information about the processing and the processing state of proteins and functional implications thereof derived from research literature, contributions by the scientific community and biological databases.
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
TopFIND (1–3) is a protein-centric database for the annotation of protein termini currently in its third version. Non-canonical protein termini can be the result of multiple different biological processes, including pre-translational processes such as alternative splicing and alternative translation initiation or post-translational protein processing by proteases that cleave proteases as part of protein maturation or as a regulatory modification. Accordingly, protein termini evidence in TopFIND is inferred from other databases such as ENSEMBL (4) transcripts, TISdb (5) for alternative translation initiation, MEROPS (6) for protein cleavage by proteases, and UniProt (7) for canonical and protein isoform start sites. Additionally, termini are annotated from user submitted lists of termini and inferred from user submitted lists of cleavage sites. As a protein-centric database, TopFIND presents a website for each protein isoform (organized around UniProt accession codes). These websites contain general protein information, such as organism, chromosome location, and proteins sequence. They then list position information such as specific termini evidences, known cleavage sites, sequence features and domains for each protein. In addition, TopFIND shows each protein in the context of the protease web, a network of proteases and their inhibitors, where a protease can cleave of other proteases and their inhibitors thus influencing their activity (8). All information in TopFIND can be filtered by a powerful filter engine that relies on rich annotation as to the origin of data in TopFIND. TopFIND can also be programmatically queried using the PSICQUIC or XML API.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
TopFIND is a protein-centric database for the annotation of protein termini currently in its third version. Non-canonical protein termini can be the result of multiple different biological processes, including pre-translational processes such as alternative splicing and alternative translation initiation or post-translational protein processing by proteases that cleave proteases as part of protein maturation or as a regulatory modification. Accordingly, protein termini evidence in TopFIND is inferred from other databases such as ENSEMBL transcripts, TISdb for alternative translation initiation, MEROPS for protein cleavage by proteases, and UniProt for canonical and protein isoform start sites.
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
First public knowledgebase for protein termini and protease processing.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.896536
Webpage:
https://topfind.clip.msl.ubc.ca/Webpage
More detailed information about this field from each metasource.
https://topfind.clip.msl.ubc.ca/
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://clipserve.clip.ubc.ca/topfind
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
http://clipserve.clip.ubc.ca/topfind/
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
Licence:
Name: TopFIND Data Policies and DisclaimerLicence name
More detailed information about this field from each metasource.
TopFIND Data Policies and Disclaimer
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
CC
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://topfind.clip.msl.ubc.ca/documentations/license
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://creativecommons.org/licenses/by-nd/3.0/
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
TopFIND, a knowledgebase linking protein termini with function
PMID: 21822272
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events
PMID: 25332401
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function
PMID: 22102574
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
http://dx.doi.org/10.1093/nar/gku1012
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
TopFIND, a knowledgebase linking protein termini with function
PMID: 21822272
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events
PMID: 25332401
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function
PMID: 22102574
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
http://dx.doi.org/10.1093/nar/gku1012
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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TopFIND, a knowledgebase linking protein termini with function
PubMed citations: 39.
39 articles citing: TopFIND, a knowledgebase linking protein termini with function
Robust unsupervised deconvolution of linear motifs characterizes 68 protein modifications at proteome scale. PMID:34795380
MMP8 increases tongue carcinoma cell-cell adhesion and diminishes migration via cleavage of anti-adhesive FXYD5. PMID:34059618
PDX models reflect the proteome landscape of pediatric acute lymphoblastic leukemia but divert in select pathways. PMID:33722259
Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples. PMID:31471496
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. PMID:29860277
Comprehensive analysis of human protein N-termini enables assessment of various protein forms. PMID:28747677
Caspases and their substrates. PMID:28498362
An intracellular matrix metalloproteinase-2 isoform induces tubular regulated necrosis: implications for acute kidney injury. PMID:28331061
Quantitative proteomics and terminomics to elucidate the role of ubiquitination and proteolysis in adaptive immunity. PMID:27644975
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. PMID:27487407
Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini. PMID:27087653
Active site specificity profiling datasets of matrix metalloproteinases (MMPs) 1, 2, 3, 7, 8, 9, 12, 13 and 14. PMID:26981551
DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions. PMID:26827237
TAILS N-terminomic and proteomic datasets of healthy human dental pulp. PMID:26587561
A systematic study of modulation of ADAM-mediated ectodomain shedding by site-specific O-glycosylation. PMID:26554003
Exploring the potential of public proteomics data. PMID:26449181
Two Distinct Isoforms of Matrix Metalloproteinase-2 Are Associated with Human Delayed Kidney Graft Function. PMID:26379248
PrOnto database : GO term functional dissimilarity inferred from biological data. PMID:26089836
Extreme multifunctional proteins identified from a human protein interaction network. PMID:26054620
The path of no return--Truncated protein N-termini and current ignorance of their genesis. PMID:26010509
The biological functions of Naa10 - From amino-terminal acetylation to human disease. PMID:25987439
In vivo assessment of protease dynamics in cutaneous wound healing by degradomics analysis of porcine wound exudates. PMID:25516628
Proteolysis mediated by cysteine cathepsins and legumain-recent advances and cell biological challenges. PMID:25398648
Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events. PMID:25332401
Network analyses reveal pervasive functional regulation between proteases in the human protease web. PMID:24865846
Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome. PMID:24555563
Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes. PMID:24550280
Proteomic amino-termini profiling reveals targeting information for protein import into complex plastids. PMID:24066144
The Human Proteome Organization Chromosome 6 Consortium: integrating chromosome-centric and biology/disease driven strategies. PMID:23933161
Proteolytic post-translational modification of proteins: proteomic tools and methodology. PMID:23887885
Identifying natural substrates for dipeptidyl peptidases 8 and 9 using terminal amine isotopic labeling of substrates (TAILS) reveals in vivo roles in cellular homeostasis and energy metabolism. PMID:23519473
Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation. PMID:23322905
Deletion of cysteine cathepsins B or L yields differential impacts on murine skin proteome and degradome. PMID:23233448
Unbiased selective isolation of protein N-terminal peptides from complex proteome samples using phospho tagging (PTAG) and TiO(2)-based depletion. PMID:22729381
Profiling protease activities by dynamic proteomics workflows. PMID:22246865
Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation features. PMID:22223895
DOMMINO: a database of macromolecular interactions. PMID:22135305
TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function. PMID:22102574
Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates. PMID:21959240 -
Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events
PubMed citations: 34.
34 articles citing: Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events
Protease Activity Analysis: A Toolkit for Analyzing Enzyme Activity Data. PMID:35874224
Doxycycline Alters the Porcine Renal Proteome and Degradome during Hypothermic Machine Perfusion. PMID:35723325
HUNTER: Sensitive Automated Characterization of Proteolytic Systems by N Termini Enrichment from Microscale Specimen. PMID:35612738
A User Guide to Validation, Annotation, and Evaluation of N-Terminome Datasets with MANTI. PMID:35583789
Sensitive Plant N-Terminome Profiling with HUNTER. PMID:35583779
Assessing proteolytic events in bioinformatic reanalysis of public secretome data from melanoma cell lines. PMID:35462751
Inferring early-life host and microbiome functions by mass spectrometry-based metaproteomics and metabolomics. PMID:35024099
Characterising proteolysis during SARS-CoV-2 infection identifies viral cleavage sites and cellular targets with therapeutic potential. PMID:34548480
MMP8 increases tongue carcinoma cell-cell adhesion and diminishes migration via cleavage of anti-adhesive FXYD5. PMID:34059618
MANTI: Automated Annotation of Protein N-Termini for Rapid Interpretation of N-Terminome Data Sets. PMID:33729755
PDX models reflect the proteome landscape of pediatric acute lymphoblastic leukemia but divert in select pathways. PMID:33722259
Mapping proteolytic neo-N termini at the surface of living cells. PMID:33536314
Cell density-dependent proteolysis by HtrA1 induces translocation of zyxin to the nucleus and increased cell survival. PMID:32826880
G Protein-Coupled Receptors in the Sweet Spot: Glycosylation and other Post-translational Modifications. PMID:32296765
Exploring the Mitochondrial Degradome by the TAILS Proteomics Approach in a Cellular Model of Parkinson's Disease. PMID:31417398
The Expanding Role of MT1-MMP in Cancer Progression. PMID:31137480
The carboxy-terminus, a key regulator of protein function. PMID:31106589
Integration of Two In-depth Quantitative Proteomics Approaches Determines the Kallikrein-related Peptidase 7 (KLK7) Degradome in Ovarian Cancer Cell Secretome. PMID:30705123
TAILS N-terminomics and proteomics reveal complex regulation of proteolytic cleavage by O-glycosylation. PMID:29593093
Quantitative peptidomics of endogenous peptides involved in TGF-β1-induced epithelial mesenchymal transition of renal epithelial cells. PMID:29531806
N-Degradomic Analysis Reveals a Proteolytic Network Processing the Podocyte Cytoskeleton. PMID:28724775
Protease-Inhibitor Interaction Predictions: Lessons on the Complexity of Protein-Protein Interactions. PMID:28385878
EnCOUNTer: a parsing tool to uncover the mature N-terminus of organelle-targeted proteins in complex samples. PMID:28320318
Interactome disassembly during apoptosis occurs independent of caspase cleavage. PMID:28082348
Quantitative proteomics and terminomics to elucidate the role of ubiquitination and proteolysis in adaptive immunity. PMID:27644975
Determinants of Macromolecular Specificity from Proteomics-Derived Peptide Substrate Data. PMID:27455965
Uncovering a Dual Regulatory Role for Caspases During Endoplasmic Reticulum Stress-induced Cell Death. PMID:27125827
The Functional Human C-Terminome. PMID:27050421
Active site specificity profiling datasets of matrix metalloproteinases (MMPs) 1, 2, 3, 7, 8, 9, 12, 13 and 14. PMID:26981551
Positional proteomics reveals differences in N-terminal proteoform stability. PMID:26893308
TAILS N-terminomic and proteomic datasets of healthy human dental pulp. PMID:26587561
Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors. PMID:26527717
The path of no return--Truncated protein N-termini and current ignorance of their genesis. PMID:26010509
In vivo assessment of protease dynamics in cutaneous wound healing by degradomics analysis of porcine wound exudates. PMID:25516628 -
TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function
PubMed citations: 23.
23 articles citing: TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function
HUNTER: Sensitive Automated Characterization of Proteolytic Systems by N Termini Enrichment from Microscale Specimen. PMID:35612738
PDX models reflect the proteome landscape of pediatric acute lymphoblastic leukemia but divert in select pathways. PMID:33722259
Overlap of NatA and IAP substrates implicates N-terminal acetylation in protein stabilization. PMID:33523899
Terminomics Methodologies and the Completeness of Reductive Dimethylation: A Meta-Analysis of Publicly Available Datasets. PMID:30934878
Proteases: Pivot Points in Functional Proteomics. PMID:30276748
TAILS N-terminomics and proteomics reveal complex regulation of proteolytic cleavage by O-glycosylation. PMID:29593093
Comprehensive analysis of human protein N-termini enables assessment of various protein forms. PMID:28747677
CaspNeuroD: a knowledgebase of predicted caspase cleavage sites in human proteins related to neurodegenerative diseases. PMID:28025335
GAPP: A Proteogenomic Software for Genome Annotation and Global Profiling of Post-translational Modifications in Prokaryotes. PMID:27630248
The Functional Human C-Terminome. PMID:27050421
Active site specificity profiling datasets of matrix metalloproteinases (MMPs) 1, 2, 3, 7, 8, 9, 12, 13 and 14. PMID:26981551
TAILS N-terminomic and proteomic datasets of healthy human dental pulp. PMID:26587561
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. PMID:25652942
Amyloid precursor protein interaction network in human testis: sentinel proteins for male reproduction. PMID:25591988
Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events. PMID:25332401
Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates. PMID:25330111
Global analysis of cellular proteolysis by selective enzymatic labeling of protein N-termini. PMID:24974296
Network analyses reveal pervasive functional regulation between proteases in the human protease web. PMID:24865846
N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men. PMID:24623590
Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome. PMID:24555563
Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation. PMID:23322905
The DegraBase: a database of proteolysis in healthy and apoptotic human cells. PMID:23264352
The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events. PMID:23093603 - http://dx.doi.org/10.1093/nar/gku1012
Tags:
Tags
More detailed information about this field from each metasource.
alternative splicing
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
c-terminal amino acid residue
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
evidence
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
n-terminal amino acid residue
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
network model
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protease cleavage
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protease site
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein c-terminus binding
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein n-terminus binding
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein domain
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein modification
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
proteolytic digest
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protocol
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
sequence annotation
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
translation initiation
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
bioinformatics
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
polypeptide chain
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
protease
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
proteins
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
proteomics
metasource: re3data.org
version: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
protein modifications
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
protein folds and structural domains
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
protein binding sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
Tags
More detailed information about this field from each metasource.
alternative splicing
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
c-terminal amino acid residue
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
evidence
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
n-terminal amino acid residue
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
network model
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protease cleavage
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protease site
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein c-terminus binding
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein n-terminus binding
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein domain
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein modification
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
proteolytic digest
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protocol
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
sequence annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
translation initiation
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: TopFIND; Termini-Oriented Protein Function INferred Database; DOI: https://doi.org/10.25504/FAIRsharing.rkpmhn; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
bioinformatics
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
polypeptide chain
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
protease
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
proteins
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
proteomics
metasource: re3data.orgversion: re3data.org: TopFIND; editing status 2018-08-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.896536
protein modifications
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.896536
protein folds and structural domains
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.896536
protein binding sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.896536
alternative splicing c-terminal amino acid residue evidence molecular interaction n-terminal amino acid residue network model protease cleavage protease site protein c-terminus binding protein n-terminus binding protein domain protein modification proteolytic digest protocol sequence annotation translation initiation polypeptide region protein sequence protein family bioinformatics polypeptide chain protease proteins proteomics protein modifications protein folds and structural domains protein binding sites
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