Non-Ribosomal Peptides Database
Names
More detailed information about this field from each metasource.
Non-Ribosomal Peptides Database
metasource: Fairsharing.org
version: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
NORINE
metasource: Fairsharing.org
version: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
Names
More detailed information about this field from each metasource.
Non-Ribosomal Peptides Database
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
NORINE
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
Names
More detailed information about this field from each metasource.
Non-Ribosomal Peptides Database
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
NORINE
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
Norine is a platform that includes a database of nonribosomal peptides together with tools for their analysis. Norine currently contains more than 1000 peptides.
Description
More detailed information about this field from each metasource.
Norine is a platform that includes a database of nonribosomal peptides together with tools for their analysis. Norine currently contains more than 1000 peptides.
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
A database of nonribosomal peptides
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
NORINE is a platform that includes a database of nonribosomal peptides together with tools for their analysis.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
Webpage:
https://bioinfo.cristal.univ-lille.fr/norineWebpage
More detailed information about this field from each metasource.
https://bioinfo.cristal.univ-lille.fr/norine
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://bioinfo.lifl.fr/norine/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://norine.univ-lille.fr/norine/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
Licence:
Name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
CC-BY-NC-SA-4.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by-nc-sa/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
(7)
Publications
More detailed information about this field from each metasource.
NORINE: a database of nonribosomal peptides
PMID: 17913739
metasource: Fairsharing.org
version: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gkz1000
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1093/nar/gkv1143
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1093/nar/gkm792
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1186/1472-6807-9-15
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1016/j.synbio.2015.11.001
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1007/s10658-018-1544-2
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
Publications
More detailed information about this field from each metasource.
NORINE: a database of nonribosomal peptides
PMID: 17913739
metasource: Fairsharing.org
version: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/nar/gkz1000
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1093/nar/gkv1143
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1093/nar/gkm792
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1186/1472-6807-9-15
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1016/j.synbio.2015.11.001
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
http://dx.doi.org/10.1007/s10658-018-1544-2
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
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NORINE: a database of nonribosomal peptides
PubMed citations: 94.
94 articles citing: NORINE: a database of nonribosomal peptides
Impact of the Purification Process on the Spray-Drying Performances of the Three Families of Lipopeptide Biosurfactant Produced by Bacillus subtilis. PMID:35004661
Distribution of bacteriocin genes in the lineages of Lactiplantibacillus plantarum. PMID:34625657
Nonribosomal peptide synthetases and their biotechnological potential in Penicillium rubens. PMID:34279620
MassSpecBlocks: a web-based tool to create building blocks and sequences of nonribosomal peptides and polyketides for tandem mass spectra analysis. PMID:34233741
SeMPI 2.0-A Web Server for PKS and NRPS Predictions Combined with Metabolite Screening in Natural Product Databases. PMID:33383692
Development of a Bioprocess for the Production of Cyclic Lipopeptides Pseudofactins With Efficient Purification From Collected Foam. PMID:33330412
A Novel Peptide Antibiotic Produced by Streptomyces roseoflavus Strain INA-Ac-5812 With Directed Activity Against Gram-Positive Bacteria. PMID:33072016
Biochemical characterization of the Nocardia lactamdurans ACV synthetase. PMID:32275728
Metabolomic-guided discovery of cyclic nonribosomal peptides from Xylaria ellisii sp. nov., a leaf and stem endophyte of Vaccinium angustifolium. PMID:32165688
Norine: update of the nonribosomal peptide resource. PMID:31691799
Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides. PMID:31659720
Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts. PMID:31603945
Bacterial MbtH-like Proteins Stimulate Nonribosomal Peptide Synthetase-Derived Secondary Metabolism in Filamentous Fungi. PMID:31284717
Genome-Guided Discovery of Pretilactam from Actinosynnema pretiosum ATCC 31565. PMID:31248172
Computational structural enzymology methodologies for the study and engineering of fatty acid synthases, polyketide synthases and nonribosomal peptide synthetases. PMID:31155062
Distribution and Evolution of Nonribosomal Peptide Synthetase Gene Clusters in the Ceratocystidaceae. PMID:31052158
Overview of the Antimicrobial Compounds Produced by Members of the Bacillus subtilis Group. PMID:30873135
Individual- versus group-optimality in the production of secreted bacterial compounds. PMID:30793292
Inter-Modular Linkers play a crucial role in governing the biosynthesis of non-ribosomal peptides. PMID:30785185
rBAN: retro-biosynthetic analysis of nonribosomal peptides. PMID:30737579
Engineering of the Filamentous Fungus Penicillium chrysogenum as Cell Factory for Natural Products. PMID:30524395
Biological and Chemical Diversity of Ascidian-Associated Microorganisms. PMID:30275404
Cyclic Lipodepsipeptides From Pseudomonas spp. - Biological Swiss-Army Knives. PMID:30158910
High-throughput optimization of medium components and culture conditions for the efficient production of a lipopeptide pseudofactin by Pseudomonas fluorescens BD5. PMID:30077177
Molecular dynamics-derived rotamer libraries for d-amino acids within homochiral and heterochiral polypeptides. PMID:29992252
Accessing Bioactive Natural Products from the Human Microbiome. PMID:29902438
StraPep: a structure database of bioactive peptides. PMID:29688386
Nonribosomal Peptides from Marine Microbes and Their Antimicrobial and Anticancer Potential. PMID:29209209
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters. PMID:29112695
Norine: A powerful resource for novel nonribosomal peptide discovery. PMID:29082924
The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production. PMID:29062930
A strategy for the identification of patterns in the biosynthesis of nonribosomal peptides by Betaproteobacteria species. PMID:28871139
A metabolomics guided exploration of marine natural product chemical space. PMID:28819353
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. PMID:28573592
Microcystin-LR Detected in a Low Molecular Weight Fraction from a Crude Extract of Zoanthus sociatus. PMID:28257074
Non-ribosomal peptide synthetases: Identifying the cryptic gene clusters and decoding the natural product. PMID:28229977
Genome and transcriptome analysis of surfactin biosynthesis in Bacillus amyloliquefaciens MT45. PMID:28112210
The minimotif synthesis hypothesis for the origin of life. PMID:28083146
Putative Nonribosomal Peptide Synthetase and Cytochrome P450 Genes Responsible for Tentoxin Biosynthesis in Alternaria alternata ZJ33. PMID:27490569
Discovery Strategies of Bioactive Compounds Synthesized by Nonribosomal Peptide Synthetases and Type-I Polyketide Synthases Derived from Marine Microbiomes. PMID:27092515
Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis. PMID:27060604
Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. PMID:27050687
Enhancing Nonribosomal Peptide Biosynthesis in Filamentous Fungi. PMID:26831707
Smiles2Monomers: a link between chemical and biological structures for polymers. PMID:26715946
StreptomeDB 2.0--an extended resource of natural products produced by streptomycetes. PMID:26615197
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing. PMID:26527733
Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks. PMID:26497201
Targeted metagenomics as a tool to tap into marine natural product diversity for the discovery and production of drug candidates. PMID:26379658
Computational approaches to natural product discovery. PMID:26284671
CycloBranch: De Novo Sequencing of Nonribosomal Peptides from Accurate Product Ion Mass Spectra. PMID:26195308
Evolution of Chemical Diversity in Echinocandin Lipopeptide Antifungal Metabolites. PMID:26024901
Fungal artificial chromosomes for mining of the fungal secondary metabolome. PMID:25925221
Genome mining: Prediction of lipopeptides and polyketides from Bacillus and related Firmicutes. PMID:25893081
Large-scale metabolomics reveals a complex response of Aspergillus nidulans to epigenetic perturbation. PMID:25815712
Specific disulfide cross-linking to constrict the mobile carrier domain of nonribosomal peptide synthetases. PMID:25713404
Small molecule annotation for the Protein Data Bank. PMID:25425036
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes. PMID:25377257
A roadmap for natural product discovery based on large-scale genomics and metabolomics. PMID:25262415
Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products. PMID:25188327
NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery. PMID:25116163
Structural investigation of ribosomally synthesized natural products by hypothetical structure enumeration and evaluation using tandem MS. PMID:25092299
Investigation of the Antimicrobial Activity of Bacillus licheniformis Strains Isolated from Retail Powdered Infant Milk Formulae. PMID:24676765
Prediction of monomer isomery in Florine: a workflow dedicated to nonribosomal peptide discovery. PMID:24465643
Strain-specific proteogenomics accelerates the discovery of natural products via their biosynthetic pathways. PMID:24242000
Bioinformatics tools for genome mining of polyketide and non-ribosomal peptides. PMID:24174214
Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank. PMID:24173824
Antimicrobial peptides from marine proteobacteria. PMID:24084784
Microbial natural products: molecular blueprints for antitumor drugs. PMID:23999966
Triggers and cues that activate antibiotic production by actinomycetes. PMID:23907251
MS/MS networking guided analysis of molecule and gene cluster families. PMID:23798442
Crystal structures of the first condensation domain of CDA synthetase suggest conformational changes during the synthetic cycle of nonribosomal peptide synthetases. PMID:23756159
antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers. PMID:23737449
CYCLONE--a utility for de novo sequencing of microbial cyclic peptides. PMID:23702710
Databases of the thiotemplate modular systems (CSDB) and their in silico recombinants (r-CSDB). PMID:23504028
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource. PMID:23203869
StreptomeDB: a resource for natural compounds isolated from Streptomyces species. PMID:23193280
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery. PMID:23132949
ClusterMine360: a database of microbial PKS/NRPS biosynthesis. PMID:23104377
A new fingerprint to predict nonribosomal peptides activity. PMID:23053735
mMass as a software tool for the annotation of cyclic peptide tandem mass spectra. PMID:23028676
Imaging mass spectrometry and genome mining via short sequence tagging identified the anti-infective agent arylomycin in Streptomyces roseosporus. PMID:21999343
Sequencing cyclic peptides by multistage mass spectrometry. PMID:21751357
Biosynthesis of a complex yersiniabactin-like natural product via the mic locus in phytopathogen Ralstonia solanacearum. PMID:21724891
NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity. PMID:21558170
Cytotoxic veraguamides, alkynyl bromide-containing cyclic depsipeptides from the marine cyanobacterium cf. Oscillatoria margaritifera. PMID:21488639
Natural products genomics. PMID:21261848
Inhibition of cereulide toxin synthesis by emetic Bacillus cereus via long-chain polyphosphates. PMID:21169440
A novel docking domain interface model predicting recombination between homoeologous modular biosynthetic gene clusters. PMID:21107638
Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity. PMID:20693331
Identification of the main promoter directing cereulide biosynthesis in emetic Bacillus cereus and its application for real-time monitoring of ces gene expression in foods. PMID:20038713
Ribosomal peptide natural products: bridging the ribosomal and nonribosomal worlds. PMID:19642421
Dereplication and de novo sequencing of nonribosomal peptides. PMID:19597502
Automated genome mining for natural products. PMID:19531248
Structural pattern matching of nonribosomal peptides. PMID:19296847 - http://dx.doi.org/10.1093/nar/gkz1000
- http://dx.doi.org/10.1093/nar/gkv1143
- http://dx.doi.org/10.1093/nar/gkm792
- http://dx.doi.org/10.1186/1472-6807-9-15
Tags:
Tags
More detailed information about this field from each metasource.
peptide
metasource: Fairsharing.org
version: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
computational chemistry
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
microbiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
computational biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
biological databases
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:01.220333
Tags
More detailed information about this field from each metasource.
peptide
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: NORINE; Non-Ribosomal Peptides Database; DOI: https://doi.org/10.25504/FAIRsharing.gf8yhy; Last edited: March 5, 2020, 10:22 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
databases of individual protein families
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
computational chemistry
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
microbiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
computational biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
biological databases
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:24:01.220333
peptide protein protein sequence protein family computational chemistry microbiology computational biology proteins biological
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