RBPDB

Names
More detailed information about this field from each metasource.

RBPDB
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.590669

rbpdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.590669

Other names: rbpdb

RNA-binding proteins and their specificities

Webpage:

http://rbpdb.ccbr.utoronto.ca/

Publications:

Publications
More detailed information about this field from each metasource.

RBPDB: a database of RNA-binding specificities
PMID: 21036867
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.590669

http://nar.oxfordjournals.org/content/39/suppl_1/D301
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

RBPDB: a database of RNA-binding specificities PubMed citations: 230.

230 articles citing: RBPDB: a database of RNA-binding specificities

Human Enterovirus B: Selective Inhibition by Quinoxaline Derivatives and Bioinformatic RNA-Motif Identification as New Targets. PMID:35215294
Polympact: exploring functional relations among common human genetic variants. PMID:35061909
Highly-metastatic colorectal cancer cell released miR-181a-5p-rich extracellular vesicles promote liver metastasis by activating hepatic stellate cells and remodelling the tumour microenvironment. PMID:35041299
Integrated bioinformatics and experiments reveal the roles and driving forces for HSF1 in colorectal cancer. PMID:35006040
NAPRT Expression Regulation Mechanisms: Novel Functions Predicted by a Bioinformatics Approach. PMID:34946971
TranSNPs: A class of functional SNPs affecting mRNA translation potential revealed by fraction-based allelic imbalance. PMID:34917903
Identification of Key Deregulated RNA-Binding Proteins in Pancreatic Cancer by Meta-Analysis and Prediction of Their Role as Modulators of Oncogenesis. PMID:34912796
Fine Particulate Matter Induces Childhood Asthma Attacks via Extracellular Vesicle-Packaged Let-7i-5p-Mediated Modulation of the MAPK Signaling Pathway. PMID:34816611
Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides. PMID:34785657
Linc-ROR facilitates progression and angiogenesis of hepatocellular carcinoma by modulating DEPDC1 expression. PMID:34741030
ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation. PMID:34723320
Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression. PMID:34694601
Translational repression of NMD targets by GIGYF2 and EIF4E2. PMID:34665823
A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation. PMID:34649616
Integrative proteome analysis implicates aberrant RNA splicing in impaired developmental potential of aged mouse oocytes. PMID:34582091
Landscape of functional interactions of human processive ribonucleases revealed by high-throughput siRNA screenings. PMID:34541468
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Dynamic changes in RNA-protein interactions and RNA secondary structure in mammalian erythropoiesis. PMID:34315813
Identification and characterization of a novel Epstein-Barr Virus-encoded circular RNA from LMP-2 Gene. PMID:34257379
lncRNA LINC01296 Promotes Oral Squamous Cell Carcinoma Development by Binding with SRSF1. PMID:34195277
Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins. PMID:34133714
Specific Interaction of DDX6 with an RNA Hairpin in the 3' UTR of the Dengue Virus Genome Mediates G1 Phase Arrest. PMID:34132569
MiR-124 synergism with ELAVL3 enhances target gene expression to promote neuronal maturity. PMID:34031238
Interpretation of deep learning in genomics and epigenomics. PMID:34020542
SRSF1 promotes the inclusion of exon 3 of SRA1 and the invasion of hepatocellular carcinoma cells by interacting with exon 3 of SRA1pre-mRNA. PMID:34011971
Caveolin-1-driven membrane remodelling regulates hnRNPK-mediated exosomal microRNA sorting in cancer. PMID:33931969
CircRNA-Protein Interactions in Muscle Development and Diseases. PMID:33806945
MTSplice predicts effects of genetic variants on tissue-specific splicing. PMID:33789710
LncRNA LINC01305 promotes cervical cancer progression through KHSRP and exosome-mediated transfer. PMID:33638945
Interaction of 7SK with the Smn complex modulates snRNP production. PMID:33627647
CAFs-Derived Exosomal miRNA-130a Confers Cisplatin Resistance of NSCLC Cells Through PUM2-Dependent Packaging. PMID:33542625
Allele-specific alternative splicing and its functional genetic variants in human tissues. PMID:33452016
Circular RNA circDLC1 inhibits MMP1-mediated liver cancer progression via interaction with HuR. PMID:33391541
hnRNPLL controls pluripotency exit of embryonic stem cells by modulating alternative splicing of Tbx3 and Bptf. PMID:33349972
Coiled-Coil Motifs of RNA-Binding Proteins: Dynamicity in RNA Regulation. PMID:33330512
Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing. PMID:33292386
RNA-binding proteins in human genetic disease. PMID:33235359
Tumor-derived exosomal miR-934 induces macrophage M2 polarization to promote liver metastasis of colorectal cancer. PMID:33213490
Transfer-RNA-Derived Fragments Are Potential Prognostic Factors in Patients with Squamous Cell Carcinoma of the Head and Neck. PMID:33202812
RBP2GO: a comprehensive pan-species database on RNA-binding proteins, their interactions and functions. PMID:33196814
Aberrant RNA Splicing Events Driven by Mutations of RNA-Binding Proteins as Indicators for Skin Cutaneous Melanoma Prognosis. PMID:33178596
CD63+ Cancer-Associated Fibroblasts Confer Tamoxifen Resistance to Breast Cancer Cells through Exosomal miR-22. PMID:33173749
Lower expression of LINC00092 in lung adenocarcinoma might mean poorer prognosis: A study based on data mining and bioinformatics. PMID:33126385
Transite: A Computational Motif-Based Analysis Platform That Identifies RNA-Binding Proteins Modulating Changes in Gene Expression. PMID:32846122
SRSF1 regulates exosome microRNA enrichment in human cancer cells. PMID:32819370
Paired Box 9 (PAX9), the RNA polymerase II transcription factor, regulates human ribosome biogenesis and craniofacial development. PMID:32813698
Integrated Analyses of lncRNA and mRNA Profiles Reveal Characteristic and Functional Changes of Leukocytes in Qi-Deficiency Constitution and Pi-Qi-Deficiency Syndrome of Chronic Superficial Gastritis. PMID:32724329
Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences. PMID:32703884
Ribosome profiling reveals a functional role for autophagy in mRNA translational control. PMID:32681145
Negative feedback regulation by HuR controls TRIM21 expression and function in response to UV radiation. PMID:32678213
An evolutionarily conserved RNA structure in the functional core of the lincRNA Cyrano. PMID:32457084
Transcriptome-wide organization of subcellular microenvironments revealed by ATLAS-Seq. PMID:32421779
5' UTR variants in the quantitative trait gene Hnrnph1 support reduced 5' UTR usage and hnRNP H protein as a molecular mechanism underlying reduced methamphetamine sensitivity. PMID:32401417
Characterization of RNP Networks of PUM1 and PUM2 Post-Transcriptional Regulators in TCam-2 Cells, a Human Male Germ Cell Model. PMID:32316190
How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms. PMID:32243832
Identification, quantification and bioinformatic analysis of RNA-dependent proteins by RNase treatment and density gradient ultracentrifugation using R-DeeP. PMID:32094787
Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression. PMID:32047515
A post-transcriptional program of chemoresistance by AU-rich elements and TTP in quiescent leukemic cells. PMID:32039742
Dysregulated lncRNA-miRNA-mRNA Network Reveals Patient Survival-Associated Modules and RNA Binding Proteins in Invasive Breast Carcinoma. PMID:32010179
Molecular Mechanisms of Arsenic-Induced Disruption of DNA Repair. PMID:31986875
Prevalence and architecture of posttranscriptionally impaired synonymous mutations in 8,320 genomes across 22 cancer types. PMID:31950163
The RNA-binding protein HuR is a negative regulator in adipogenesis. PMID:31924774
ASCOT identifies key regulators of neuronal subtype-specific splicing. PMID:31919425
RNAInter in 2020: RNA interactome repository with increased coverage and annotation. PMID:31906603
Research progress on the interactions between long non-coding RNAs and microRNAs in human cancer. PMID:31897175
A Depletion of Stop Codons in lincRNA is Owing to Transfer of Selective Constraint from Coding Sequences. PMID:31841162
RegSNPs-intron: a computational framework for predicting pathogenic impact of intronic single nucleotide variants. PMID:31779641
Accelerated evolution of oligodendrocytes in the human brain. PMID:31712436
Drosophila PSI controls circadian period and the phase of circadian behavior under temperature cycle via tim splicing. PMID:31702555
EuRBPDB: a comprehensive resource for annotation, functional and oncological investigation of eukaryotic RNA binding proteins (RBPs). PMID:31598693
Prediction of mRNA subcellular localization using deep recurrent neural networks. PMID:31510698
High throughput approaches to study RNA-protein interactions in vitro. PMID:31494245
Human cytomegalovirus induces and exploits Roquin to counteract the IRF1-mediated antiviral state. PMID:31451648
HuR interacts with lincBRN1a and lincBRN1b during neuronal stem cells differentiation. PMID:31345103
Comprehensive in vivo identification of the c-Myc mRNA protein interactome using HyPR-MS. PMID:31296583
Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data. PMID:31238884
Modeling RNA-Binding Protein Specificity In Vivo by Precisely Registering Protein-RNA Crosslink Sites. PMID:31226278
The opposite role of alternatively spliced isoforms of LINC00477 in gastric cancer. PMID:31191018
EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins. PMID:31117939
R-DeeP: Proteome-wide and Quantitative Identification of RNA-Dependent Proteins by Density Gradient Ultracentrifugation. PMID:31076284
Global donor and acceptor splicing site kinetics in human cells. PMID:31025937
DNA-protein interaction: identification, prediction and data analysis. PMID:30915687
MSGP: the first database of the protein components of the mammalian stress granules. PMID:30820574
Targeting an RNA-Binding Protein Network in Acute Myeloid Leukemia. PMID:30799057
Comprehensive bioinformatics analysis of lncRNAs in gastric cancer. PMID:30655896
Exosomal miR-196a derived from cancer-associated fibroblasts confers cisplatin resistance in head and neck cancer through targeting CDKN1B and ING5. PMID:30642385
beRBP: binding estimation for human RNA-binding proteins. PMID:30590704
Practical considerations on performing and analyzing CLIP-seq experiments to identify transcriptomic-wide RNA-protein interactions. PMID:30527764
A Multiplexed Assay for Exon Recognition Reveals that an Unappreciated Fraction of Rare Genetic Variants Cause Large-Effect Splicing Disruptions. PMID:30503770
ENPD - A Database of Eukaryotic Nucleic Acid Binding Proteins: Linking Gene Regulations to Proteins. PMID:30476229
Ethanol-Induced Behavioral Sensitization Alters the Synaptic Transcriptome and Exon Utilization in DBA/2J Mice. PMID:30319688
Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes. PMID:30149645
A circular RNA regulator quaking: a novel gold mine to be unfolded in doxorubicin-mediated cardiotoxicity. PMID:30148261
Potential role of LINC00996 in colorectal cancer: a study based on data mining and bioinformatics. PMID:30147336
GRSF1 suppresses cell senescence. PMID:30086537
IRWNRLPI: Integrating Random Walk and Neighborhood Regularized Logistic Matrix Factorization for lncRNA-Protein Interaction Prediction. PMID:30023002
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. PMID:29931155
Precise temporal regulation of alternative splicing during neural development. PMID:29875359
SMARTIV: combined sequence and structure de-novo motif discovery for in-vivo RNA binding data. PMID:29800452
A Brief Review of RNA-Protein Interaction Database Resources. PMID:29657278
β-arrestin-biased agonism of β-adrenergic receptor regulates Dicer-mediated microRNA maturation to promote cardioprotective signaling. PMID:29627294
SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data. PMID:29596423
The RNA binding protein SORBS2 suppresses metastatic colonization of ovarian cancer by stabilizing tumor-suppressive immunomodulatory transcripts. PMID:29548303
Inferring RNA sequence preferences for poorly studied RNA-binding proteins based on co-evolution. PMID:29529991
Molecular basis of titin exon exclusion by RBM20 and the novel titin splice regulator PTB4. PMID:29518215
Cytoplasmic functions of long noncoding RNAs. PMID:29516680
Long non-coding RNA deep sequencing reveals the role of macrophage in liver disorders. PMID:29383134
Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1. PMID:29379020
RNA Binding Protein as an Emerging Therapeutic Target for Cancer Prevention and Treatment. PMID:29302577
In situ functional dissection of RNA cis-regulatory elements by multiplex CRISPR-Cas9 genome engineering. PMID:29235467
Race Disparities in the Contribution of miRNA Isoforms and tRNA-Derived Fragments to Triple-Negative Breast Cancer. PMID:29229607
Quaking Inhibits Doxorubicin-Mediated Cardiotoxicity Through Regulation of Cardiac Circular RNA Expression. PMID:29133306
KSRP specifies monocytic and granulocytic differentiation through regulating miR-129 biogenesis and RUNX1 expression. PMID:29127290
Mutational landscape of RNA-binding proteins in human cancers. PMID:29023197
Unraveling transcriptome dynamics in human spermatogenesis. PMID:28935708
mRNA Interactome Capture from Plant Protoplasts. PMID:28784956
Effects of oxidative and thermal stresses on stress granule formation in human induced pluripotent stem cells. PMID:28746394
Aberrant plasticity of peripheral sensory axons in a painful neuropathy. PMID:28611388
Chloroplast- or Mitochondria-Targeted DEAD-Box RNA Helicases Play Essential Roles in Organellar RNA Metabolism and Abiotic Stress Responses. PMID:28596782
The Fragment HMGA2-sh-3p20 from HMGA2 mRNA 3'UTR Promotes the Growth of Hepatoma Cells by Upregulating HMGA2. PMID:28522832
regSNPs-splicing: a tool for prioritizing synonymous single-nucleotide substitution. PMID:28391525
APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins. PMID:28334975
Galectin-3 is a non-classic RNA binding protein that stabilizes the mucin MUC4 mRNA in the cytoplasm of cancer cells. PMID:28262838
A Novel RNA-Binding Protein Involves ABA Signaling by Post-transcriptionally Repressing ABI2. PMID:28174577
Genome-wide analysis of mRNAs associated with mouse peroxisomes. PMID:28155669
Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution. PMID:28138077
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces. PMID:28077065
POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. PMID:28053162
Bioinformatic tools for analysis of CLIP ribonucleoprotein data. PMID:28008714
RNAcompete methodology and application to determine sequence preferences of unconventional RNA-binding proteins. PMID:27956239
Urb-RIP - An Adaptable and Efficient Approach for Immunoprecipitation of RNAs and Associated RNAs/Proteins. PMID:27930710
Transcriptome and long noncoding RNA sequencing of three extracellular vesicle subtypes released from the human colon cancer LIM1863 cell line. PMID:27917920
RAID v2.0: an updated resource of RNA-associated interactions across organisms. PMID:27899615
Circular RNAs are down-regulated in KRAS mutant colon cancer cells and can be transferred to exosomes. PMID:27892494
UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts. PMID:27822292
Sequence-Based Prediction of RNA-Binding Residues in Proteins. PMID:27787829
High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells. PMID:27768875
RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information. PMID:27717309
Y-box protein 1 is required to sort microRNAs into exosomes in cells and in a cell-free reaction. PMID:27559612
Identification of a Conserved RNA-dependent RNA Polymerase (RdRp)-RNA Interface Required for Flaviviral Replication. PMID:27334920
The organization and regulation of mRNA-protein complexes. PMID:27324829
ELAVL2-regulated transcriptional and splicing networks in human neurons link neurodevelopment and autism. PMID:27260404
Inferring RBP-Mediated Regulation in Lung Squamous Cell Carcinoma. PMID:27186987
A widespread sequence-specific mRNA decay pathway mediated by hnRNPs A1 and A2/B1. PMID:27151978
Long non-coding RNAs harboring miRNA seed regions are enriched in prostate cancer exosomes. PMID:27102850
A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer. PMID:27067391
ATtRACT-a database of RNA-binding proteins and associated motifs. PMID:27055826
Genetic characterisation of PPARG, CEBPA and RXRA, and their influence on meat quality traits in cattle. PMID:27042330
The non-coding RNA composition of the mitotic chromosome by 5'-tag sequencing. PMID:27016738
Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins. PMID:26888265
RNA-binding proteins in mouse male germline stem cells: a mammalian perspective. PMID:26839690
Modeling the combined effect of RNA-binding proteins and microRNAs in post-transcriptional regulation. PMID:26837572
AURA 2: Empowering discovery of post-transcriptional networks. PMID:26779400
A MOTIF-BASED METHOD FOR PREDICTING INTERFACIAL RESIDUES IN BOTH THE RNA AND PROTEIN COMPONENTS OF PROTEIN-RNA COMPLEXES. PMID:26776208
Guardian of Genetic Messenger-RNA-Binding Proteins. PMID:26751491
Regulation of alternative splicing at the single-cell level. PMID:26712315
A human 3'UTR clone collection to study post-transcriptional gene regulation. PMID:26645212
Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt. PMID:26641712
RBP-Var: a database of functional variants involved in regulation mediated by RNA-binding proteins. PMID:26635394
Motif co-regulation and co-operativity are common mechanisms in transcriptional, post-transcriptional and post-translational regulation. PMID:26626130
ZFP36L1 promotes monocyte/macrophage differentiation by repressing CDK6. PMID:26542173
Oncofetal protein IGF2BP3 facilitates the activity of proto-oncogene protein eIF4E through the destabilization of EIF4E-BP2 mRNA. PMID:26522719
RNA-binding protein CELF1 promotes tumor growth and alters gene expression in oral squamous cell carcinoma. PMID:26498364
Combinatorial Control of mRNA Fates by RNA-Binding Proteins and Non-Coding RNAs. PMID:26404389
Circular RNA of the human sphingomyelin synthase 1 gene: Multiple splice variants, evolutionary conservatism and expression in different tissues. PMID:26274505
DynaMIT: the dynamic motif integration toolkit. PMID:26253738
Database of RNA binding protein expression and disease dynamics (READ DB). PMID:26210853
High-throughput prediction of RNA, DNA and protein binding regions mediated by intrinsic disorder. PMID:26109352
Transcriptome dynamics of the microRNA inhibition response. PMID:26089393
Revealing protein-lncRNA interaction. PMID:26041786
Systematic analysis of the Hmga2 3' UTR identifies many independent regulatory sequences and a novel interaction between distal sites. PMID:25999317
Identification of RNAIII-binding proteins in Staphylococcus aureus using tethered RNAs and streptavidin aptamers based pull-down assay. PMID:25976342
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging. PMID:25853883
Uncovering RNA binding proteins associated with age and gender during liver maturation. PMID:25824884
Pumilio1 haploinsufficiency leads to SCA1-like neurodegeneration by increasing wild-type Ataxin1 levels. PMID:25768905
Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators. PMID:25737549
Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity. PMID:25714049
Biological databases for human research. PMID:25712261
Fragile X mental retardation protein: A paradigm for translational control by RNA-binding proteins. PMID:25701550
CLIPdb: a CLIP-seq database for protein-RNA interactions. PMID:25652745
RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information. PMID:25609700
Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3' untranslated regions. PMID:25550424
E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis. PMID:25523393
Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput. PMID:25515586
High-throughput characterization of protein-RNA interactions. PMID:25504152
Evolutionary Dynamics of GLD-1-mRNA complexes in Caenorhabditis nematodes. PMID:25502909
A census of human RNA-binding proteins. PMID:25365966
Computational Methods for CLIP-seq Data Processing. PMID:25336930
ViRBase: a resource for virus-host ncRNA-associated interactions. PMID:25274736
Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease. PMID:25201102
Post-transcriptional regulation of BCL2 mRNA by the RNA-binding protein ZFP36L1 in malignant B cells. PMID:25014217
Scan for Motifs: a webserver for the analysis of post-transcriptional regulatory elements in the 3' untranslated regions (3' UTRs) of mRNAs. PMID:24909639
RBPmap: a web server for mapping binding sites of RNA-binding proteins. PMID:24829458
RAID: a comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction. PMID:24803509
The crystal structure of the Split End protein SHARP adds a new layer of complexity to proteins containing RNA recognition motifs. PMID:24748666
MicroRNA buffering and altered variance of gene expression in response to Salmonella infection. PMID:24718561
Systematic identification of regulatory elements in conserved 3' UTRs of human transcripts. PMID:24656821
Microarray meta-analysis of RNA-binding protein functions in alternative polyadenylation. PMID:24622240
CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data. PMID:24447569
Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation. PMID:24436305
Differential protein occupancy profiling of the mRNA transcriptome. PMID:24417896
Constitutive patterns of gene expression regulated by RNA-binding proteins. PMID:24401680
Evolution of the sex-lethal gene in insects and origin of the sex-determination system in Drosophila. PMID:24271947
Discovering transcription and splicing networks in myelodysplastic syndromes. PMID:24244432
Finding the target sites of RNA-binding proteins. PMID:24217996
The Drosophila RNA-binding protein HOW controls the stability of dgrasp mRNA in the follicular epithelium. PMID:24217913
Imprinted and X-linked non-coding RNAs as potential regulators of human placental function. PMID:24081302
Learning the language of post-transcriptional gene regulation. PMID:23998708
catRAPID omics: a web server for large-scale prediction of protein-RNA interactions. PMID:23975767
miR-29 acts as a decoy in sarcomas to protect the tumor suppressor A20 mRNA from degradation by HuR. PMID:23901138
A compendium of RNA-binding motifs for decoding gene regulation. PMID:23846655
IB4-binding sensory neurons in the adult rat express a novel 3' UTR-extended isoform of CaMK4 that is associated with its localization to axons. PMID:23817991
Cold-induced RNA-binding proteins regulate circadian gene expression by controlling alternative polyadenylation. PMID:23792593
RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins. PMID:23754853
Prediction of clustered RNA-binding protein motif sites in the mammalian genome. PMID:23685613
A compendium of Caenorhabditis elegans RNA binding proteins predicts extensive regulation at multiple levels. PMID:23390605
Hyper conserved elements in vertebrate mRNA 3'-UTRs reveal a translational network of RNA-binding proteins controlled by HuR. PMID:23376935
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues. PMID:23258891
Toward a genome-wide landscape of translational control. PMID:23209130
SpliceAid-F: a database of human splicing factors and their RNA-binding sites. PMID:23118479
Neurodegeneration as an RNA disorder. PMID:23063563
Insights from the HuR-interacting transcriptome: ncRNAs, ubiquitin pathways, and patterns of secondary structure dependent RNA interactions. PMID:23052832
Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression. PMID:22995832
Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules. PMID:22983564
Splicing of internal large exons is defined by novel cis-acting sequence elements. PMID:22790982
Direct regulation of the proglucagon gene by insulin, leptin, and cAMP in embryonic versus adult hypothalamic neurons. PMID:22669740
Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain. PMID:22651826
Predicting RNA-protein interactions using only sequence information. PMID:22192482
The regulatory epicenter of miRNAs. PMID:21857109
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
http://nar.oxfordjournals.org/content/39/suppl_1/D301

Tags:

Tags
More detailed information about this field from each metasource.

protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.590669

proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.590669

immunoprecipitation experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.590669

protein folds and structural domains
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:52.590669

protein sequence protein domains and classification transcription factors and regulatory sites proteins immunoprecipitation experiment protein folds and structural domains

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RNA Binding Protein Variant Database

YeTFaSCo

CLIPZ

iPfam

SpliceAid-F

InterDom

The database of eukaryotic RNA binding proteins

LenVarDB

Protein Clusters

SELEXdb

ZincBind

Pocket Similarity Search using Multiple-Sketches

mutLBSgeneDB

HRTBLDb

OPTIC

FunShift

CIS-BP

ADDA - A Domain Database

Annotated regulatory Binding Sites from Orthologous Promoters

virusMED