InnateDB
Names
More detailed information about this field from each metasource.
InnateDB
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:57.047375
A Knowlede Resource for Innate Immunity Interactions & Pathways
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
innatedb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:57.047375
Names
More detailed information about this field from each metasource.
InnateDB
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:57.047375
A Knowlede Resource for Innate Immunity Interactions & Pathways
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
innatedb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:57.047375
Other names: A Knowlede Resource for Innate Immunity Interactions & Pathways, innatedb
Names
More detailed information about this field from each metasource.
InnateDB
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:57.047375
A Knowlede Resource for Innate Immunity Interactions & Pathways
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
innatedb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:57.047375
InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.
Description
More detailed information about this field from each metasource.
InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource (>17,738).
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource. The database can be mined as a knowledgebase or used with our integrated bioinformatics and visualization tools for the systems level analysis of the innate immune response.
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
Publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:57.047375
Webpage:
http://www.innatedb.com/Webpage
More detailed information about this field from each metasource.
http://www.innatedb.com/
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:57.047375
https://www.innatedb.com/
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
Licence:
Name: CopyrightsLicence name
More detailed information about this field from each metasource.
Copyrights
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://www.innatedb.com/license.jsp
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation
PMID: 23180781
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/gks1147
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://dx.doi.org/10.1038/msb.2008.55
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:57.047375
Publications
More detailed information about this field from each metasource.
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation
PMID: 23180781
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/gks1147
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://dx.doi.org/10.1038/msb.2008.55
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:57.047375
-
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation
PubMed citations: 493.
493 articles citing: InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation
Comprehensive Analysis of TRIM Family Genes in Hepatitis Virus B-Related Hepatoma Carcinoma. PMID:35873464
Construction of circRNA-Mediated Immune-Related ceRNA Network and Identification of Circulating circRNAs as Diagnostic Biomarkers in Acute Ischemic Stroke. PMID:35873383
The Function, Role and Process of DDX58 in Heart Failure and Human Cancers. PMID:35814394
Construction of a Prognostic Immune-Related LncRNA Risk Model for Gastric Cancer. PMID:35794986
PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web. PMID:35776535
Kinome Analysis to Define Mechanisms of Adjuvant Action: PCEP Induces Unique Signaling at the Injection Site and Lymph Nodes. PMID:35746541
Molecular alterations in human milk in simulated maternal nasal mucosal infection with live attenuated influenza vaccination. PMID:35739193
mGWAS-Explorer: Linking SNPs, Genes, Metabolites, and Diseases for Functional Insights. PMID:35736459
Identifying Candidate Flavonoids for Non-Alcoholic Fatty Liver Disease by Network-Based Strategy. PMID:35721123
CXCL4 synergizes with TLR8 for TBK1-IRF5 activation, epigenomic remodeling and inflammatory response in human monocytes. PMID:35701499
Repurposing Histaminergic Drugs in Multiple Sclerosis. PMID:35683024
A comprehensive SARS-CoV-2-human protein-protein interactome network identifies pathobiology and host-targeting therapies for COVID-19. PMID:35677070
Transcriptomic analysis reveals pathophysiological relationship between chronic obstructive pulmonary disease (COPD) and periodontitis. PMID:35676670
Artificial neural networks enable genome-scale simulations of intracellular signaling. PMID:35654811
OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics. PMID:35639733
Identification and Validation of Immune Molecular Subtypes and Immune Landscape Based on Colon Cancer Cohort. PMID:35602471
Intestinal Immune Development Is Accompanied by Temporal Deviation in Microbiota Composition of Newly Hatched Pigeon Squabs. PMID:35579441
Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle. PMID:35508966
Stratification From Heterogeneity of the Cell-Death Signal Enables Prognosis Prediction and Immune Microenvironment Characterization in Esophageal Squamous Cell Carcinoma. PMID:35493093
Blood Transcriptome Analysis of Septic Patients Reveals a Long Non-Coding Alu-RNA in the Complement C5a Receptor 1 Gene. PMID:35447887
Effects of autophagy modulators tamoxifen and chloroquine on the expression profiles of long non-coding RNAs in MIAMI cells exposed to IFNγ. PMID:35446871
Identification of Immune-Related Key Genes as Potential Diagnostic Biomarkers of Sepsis in Children. PMID:35444449
Comprehensive network medicine-based drug repositioning via integration of therapeutic efficacy and side effects. PMID:35443763
Concerted type I interferon signaling in microglia and neural cells promotes memory impairment associated with amyloid β plaques. PMID:35443157
Retinoic Acid Induces an IFN-Driven Inflammatory Tumour Microenvironment, Sensitizing to Immune Checkpoint Therapy. PMID:35402250
A Bioinformatics-Assisted Review on Iron Metabolism and Immune System to Identify Potential Biomarkers of Exercise Stress-Induced Immunosuppression. PMID:35327526
Conventional Therapies Deplete Brain-Infiltrating Adaptive Immune Cells in a Mouse Model of Group 3 Medulloblastoma Implicating Myeloid Cells as Favorable Immunotherapy Targets. PMID:35309309
Generation and Analysis of Pyroptosis-Based and Immune-Based Signatures for Kidney Renal Clear Cell Carcinoma Patients, and Cell Experiment. PMID:35281845
Identifying gene network patterns and associated cellular immune responses in children with or without nut allergy. PMID:35228856
Identification of CCL19 as a Novel Immune-Related Biomarker in Diabetic Nephropathy. PMID:35222545
Computational Models for Clinical Applications in Personalized Medicine-Guidelines and Recommendations for Data Integration and Model Validation. PMID:35207655
Role of Fasciola hepatica Small RNAs in the Interaction With the Mammalian Host. PMID:35155272
A novel 4 immune-related genes as diagnostic markers and correlated with immune infiltrates in major depressive disorder. PMID:35152883
Metadichol®: A Novel Nanolipid Formulation That Inhibits SARS-CoV-2 and a Multitude of Pathological Viruses In Vitro. PMID:35039793
GCN5 maintains muscle integrity by acetylating YY1 to promote dystrophin expression. PMID:35024765
Network analysis of host-pathogen protein interactions in microbe induced cardiovascular diseases. PMID:35001887
Potential Molecular Mechanisms and Remdesivir Treatment for Acute Respiratory Syndrome Corona Virus 2 Infection/COVID 19 Through RNA Sequencing and Bioinformatics Analysis. PMID:34992355
Personal Network Inference Unveils Heterogeneous Immune Response Patterns to Viral Infection in Children with Acute Wheezing. PMID:34945765
Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes. PMID:34899963
Metabolic endophenotype associated with right ventricular glucose uptake in pulmonary hypertension. PMID:34888034
ConsensusPathDB 2022: molecular interactions update as a resource for network biology. PMID:34850110
Identification of Immune-Related Genes for Establishment of Prognostic Index in Hepatocellular Carcinoma. PMID:34796177
Immune Classification and Immune Landscape Analysis of Triple-Negative Breast Cancer. PMID:34795691
Transmission distortion and genetic incompatibilities between alleles in a multigenerational mouse advanced intercross line. PMID:34791189
MicroRNA Variants and HLA-miRNA Interactions are Novel Rheumatoid Arthritis Susceptibility Factors. PMID:34777472
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. PMID:34755877
ImmReg: the regulon atlas of immune-related pathways across cancer types. PMID:34755873
Systematic discovery of signaling pathways linking immune activation to schizophrenia. PMID:34746692
An Ebola, Neisseria and Trypanosoma human protein interaction census reveals a conserved human protein cluster targeted by various human pathogens. PMID:34745452
Identification of molecular subtyping system and four-gene prognostic signature with immune-related genes for uveal melanoma. PMID:34743576
LRG1 is an adipokine that mediates obesity-induced hepatosteatosis and insulin resistance. PMID:34730111
Construction and Validation of an Immune-Related Gene Prognostic Index for Esophageal Squamous Cell Carcinoma. PMID:34722771
The Predictive Role of Immune Related Subgroup Classification in Immune Checkpoint Blockade Therapy for Lung Adenocarcinoma. PMID:34721552
Distinct patterns of whole blood transcriptional responses are induced in mice following immunisation with adenoviral and poxviral vector vaccines encoding the same antigen. PMID:34717548
Integrative analysis of miRNA-mRNA network in idiopathic membranous nephropathy by bioinformatics analysis. PMID:34703677
Dementia subtype prediction models constructed by penalized regression methods for multiclass classification using serum microRNA expression data. PMID:34686734
Computational repurposing of therapeutic small molecules from cancer to pulmonary hypertension. PMID:34669463
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. PMID:34634810
Epithelial X-Box Binding Protein 1 Coordinates Tumor Protein p53-Driven DNA Damage Responses and Suppression of Intestinal Carcinogenesis. PMID:34599932
Comparative Transcriptome Analysis of the Expression of Antioxidant and Immunity Genes in the Spleen of a Cyanidin 3-O-Glucoside-Treated Alzheimer's Mouse Model. PMID:34573067
Pan-Cancer Analysis of Atrial-Fibrillation-Related Innate Immunity Gene ANXA4. PMID:34540918
Multi-omic profiling of primary mouse neutrophils predicts a pattern of sex and age-related functional regulation. PMID:34514433
Gelatin methacrylate hydrogels culture model for glioblastoma cells enriches for mesenchymal-like state and models interactions with immune cells. PMID:34489494
Prospects and challenges of cancer systems medicine: from genes to disease networks. PMID:34471925
The chemical biology of coronavirus host-cell interactions. PMID:34458775
Identification of fibronectin 1 (FN1) and complement component 3 (C3) as immune infiltration-related biomarkers for diabetic nephropathy using integrated bioinformatic analysis. PMID:34424825
Aberrant expression of PROS1 correlates with human papillary thyroid cancer progression. PMID:34414029
Identification of glioblastoma immune subtypes and immune landscape based on a large cohort. PMID:34412691
An Immune-Related Gene-Based Signature as Prognostic Tool in Ovarian Serous Cystadenocarcinoma. PMID:34354370
NetControl4BioMed: A web-based platform for controllability analysis of protein-protein interaction networks. PMID:34352070
Differentially Expressed Gene Pathways in the Conjunctiva of Sjögren Syndrome Keratoconjunctivitis Sicca. PMID:34349764
Identification of inflammation-related DNA methylation biomarkers in periodontitis patients based on weighted co-expression analysis. PMID:34347624
The ALPK1 pathway drives the inflammatory response to Campylobacter jejuni in human intestinal epithelial cells. PMID:34339468
Multimodal single-cell omics analysis identifies epithelium-immune cell interactions and immune vulnerability associated with sex differences in COVID-19. PMID:34330889
DNA methylation analysis improves the prognostication of acute myeloid leukemia. PMID:34308417
CFTR Lifecycle Map-A Systems Medicine Model of CFTR Maturation to Predict Possible Active Compound Combinations. PMID:34299207
Transcriptome analysis of porcine PBMCs reveals lipopolysaccharide-induced immunomodulatory responses and crosstalk of immune and glucocorticoid receptor signaling. PMID:34288827
ADEIP: an integrated platform of age-dependent expression and immune profiles across human tissues. PMID:34254996
Endothelial Immunity Trained by Coronavirus Infections, DAMP Stimulations and Regulated by Anti-Oxidant NRF2 May Contribute to Inflammations, Myelopoiesis, COVID-19 Cytokine Storms and Thromboembolism. PMID:34248940
Profiling the immune response to Mycobacterium tuberculosis Beijing family infection: a perspective from the transcriptome. PMID:34228582
Applications and analytical tools of cell communication based on ligand-receptor interactions at single cell level. PMID:34217372
Wdfy3 regulates glycophagy, mitophagy, and synaptic plasticity. PMID:34187232
Multi-Omics Approaches in Immunological Research. PMID:34177908
Construction of lncRNA-Mediated ceRNA Network for Investigating Immune Pathogenesis of Ischemic Stroke. PMID:34173933
The transcription factor RUNX2 fuels YAP1 signaling and gastric cancer tumorigenesis. PMID:34160112
mPPI: a database extension to visualize structural interactome in a one-to-many manner. PMID:34156447
Sulforaphane improves mitochondrial metabolism in fibroblasts from patients with fragile X-associated tremor and ataxia syndrome. PMID:34153466
DGLinker: flexible knowledge-graph prediction of disease-gene associations. PMID:34125897
Target identification among known drugs by deep learning from heterogeneous networks. PMID:34123272
Signatures and Prognostic Values of N6-methyladenosine (m6A) - related Immune Genes in Bladder Cancer. PMID:34116604
Integrating protein networks and machine learning for disease stratification in the Hereditary Spastic Paraplegias. PMID:34113825
Network medicine links SARS-CoV-2/COVID-19 infection to brain microvascular injury and neuroinflammation in dementia-like cognitive impairment. PMID:34108016
Identification of Small Molecule Inhibitors of a Mir155 Transcriptional Reporter in Th17 Cells. PMID:34075120
Mutant p53 Mediates Sensitivity to Cancer Treatment Agents in Oesophageal Adenocarcinoma Associated with MicroRNA and SLC7A11 Expression. PMID:34074015
Alterations of the Platelet Proteome in Lung Cancer: Accelerated F13A1 and ER Processing as New Actors in Hypercoagulability. PMID:34066760
Sequence determinants in the cathelicidin LL-37 that promote inflammation via presentation of RNA to scavenger receptors. PMID:34048712
Genome-wide identification of potential biomarkers in multiple myeloma using meta-analysis of mRNA and miRNA expression data. PMID:34040057
Alternative Splicing Events in Tumor Immune Infiltration in Colorectal Cancer. PMID:33996533
Functional conservation in genes and pathways linking ageing and immunity. PMID:33990202
Drug Repurposing: A Network-based Approach to Amyotrophic Lateral Sclerosis. PMID:33987813
Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. PMID:33980141
scConnect: a method for exploratory analysis of cell-cell communication based on single cell RNA sequencing data. PMID:33974001
Immune Subtyping in Latent Tuberculosis. PMID:33897680
An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19. PMID:33895786
Evidence of a dysregulated vitamin D endocrine system in SARS-CoV-2 infected patient's lung cells. PMID:33883570
Shared Molecular Mechanisms between Alzheimer's Disease and Periodontitis Revealed by Transcriptomic Analysis. PMID:33869630
A Nomogram Combining a Four-Gene Biomarker and Clinical Factors for Predicting Survival of Melanoma. PMID:33868993
The intra-class heterogeneity of immunophenotyping and immune landscape in oesophageal cancer and clinical implications. PMID:33860722
Epigenetic modulation of immune synaptic-cytoskeletal networks potentiates γδ T cell-mediated cytotoxicity in lung cancer. PMID:33846331
Exploring the Imbalance of Periodontitis Immune System From the Cellular to Molecular Level. PMID:33841510
Network-based modeling of herb combinations in traditional Chinese medicine. PMID:33834186
Identification of an Immune-Related Risk Signature Correlates With Immunophenotype and Predicts Anti-PD-L1 Efficacy of Urothelial Cancer. PMID:33816497
Identifying Molecular Signatures of Distinct Modes of Collective Migration in Response to the Microenvironment Using Three-Dimensional Breast Cancer Models. PMID:33804802
Network medicine links SARS-CoV-2/COVID-19 infection to brain microvascular injury and neuroinflammation in dementia-like cognitive impairment. PMID:33791705
Landscape and dynamics of single tumor and immune cells in early and advanced-stage lung adenocarcinoma. PMID:33783985
Fasciola hepatica hijacks host macrophage miRNA machinery to modulate early innate immune responses. PMID:33762636
Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancer. PMID:33750914
Analysis of Immune Gene Expression Subtypes Reveals Osteosarcoma Immune Heterogeneity. PMID:33727926
Innate immune signatures to a partially-efficacious HIV vaccine predict correlates of HIV-1 infection risk. PMID:33720973
Comprehensive Integration of Genome-Wide Association and Gene Expression Studies Reveals Novel Gene Signatures and Potential Therapeutic Targets for Helicobacter pylori-Induced Gastric Disease. PMID:33717131
In silico Analyses of Immune System Protein Interactome Network, Single-Cell RNA Sequencing of Human Tissues, and Artificial Neural Networks Reveal Potential Therapeutic Targets for Drug Repurposing Against COVID-19. PMID:33716737
Profiles of Innate Immune Cell Infiltration and Related Core Genes in Psoriasis. PMID:33681365
Why Do Muse Stem Cells Present an Enduring Stress Capacity? Hints from a Comparative Proteome Analysis. PMID:33669748
Interception Targets of Angelica Gigas Nakai Root Extract versus Pyranocoumarins in Prostate Early Lesions and Neuroendocrine Carcinomas in TRAMP Mice. PMID:33648943
Construction of the optimization prognostic model based on differentially expressed immune genes of lung adenocarcinoma. PMID:33648465
Hypercapnia selectively modulates LPS-induced changes in innate immune and DNA replication-related gene transcription in the macrophage. PMID:33633835
Ultrasound May Suppress Tumor Growth, Inhibit Inflammation, and Establish Tolerogenesis by Remodeling Innatome via Pathways of ROS, Immune Checkpoints, Cytokines, and Trained Immunity/Tolerance. PMID:33628851
Identification of biomarkers and pathways for the SARS-CoV-2 infections that make complexities in pulmonary arterial hypertension patients. PMID:33611340
Cross-species RNA-seq for deciphering host-microbe interactions. PMID:33597744
A systems-based method to repurpose marketed therapeutics for antiviral use: a SARS-CoV-2 case study. PMID:33593923
An Evaluation of the Fasciola hepatica miRnome Predicts a Targeted Regulation of Mammalian Innate Immune Responses. PMID:33584684
Bioinformatics analyses of significant genes, related pathways, and candidate diagnostic biomarkers and molecular targets in SARS-CoV-2/COVID-19. PMID:33553808
Development and verification of an immune-related gene pairs prognostic signature in ovarian cancer. PMID:33543590
Immune cell infiltration landscape and immune marker molecular typing in preeclampsia. PMID:33535891
Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori Coevolution. PMID:33503840
Integrating Proteomes for Lung Tissues and Lavage Reveals Pathways That Link Responses in Allergen-Challenged Mice. PMID:33490776
NLPEI: A Novel Self-Interacting Protein Prediction Model Based on Natural Language Processing and Evolutionary Information. PMID:33488064
Transplacental Innate Immune Training via Maternal Microbial Exposure: Role of XBP1-ERN1 Axis in Dendritic Cell Precursor Programming. PMID:33424847
A network-based deep learning methodology for stratification of tumor mutations. PMID:33416857
SARS-CoV-2 proteases PLpro and 3CLpro cleave IRF3 and critical modulators of inflammatory pathways (NLRP12 and TAB1): implications for disease presentation across species. PMID:33372854
Development and Validation of an Immune-Related Gene Pair Signature in Skin Cutaneous Melanoma. PMID:33364806
A multifactorial model of pathology for age of onset heterogeneity in familial Alzheimer's disease. PMID:33319314
Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19. PMID:33296687
Genetic Diversity of Cameroon Cattle and a Putative Genomic Map for Resistance to Bovine Tuberculosis. PMID:33281865
Constructing a 10-core genes panel for diagnosis of pediatric sepsis. PMID:33274532
Immune-Related Four-lncRNA Signature for Patients with Cervical Cancer. PMID:33274204
Towards a unified open access dataset of molecular interactions. PMID:33262342
Improvement of Disease Resistance in Livestock: Application of Immunogenomics and CRISPR/Cas9 Technology. PMID:33260762
MicroRNA Profiling in Oesophageal Adenocarcinoma Cell Lines and Patient Serum Samples Reveals a Role for miR-451a in Radiation Resistance. PMID:33255413
Fecal host biomarkers predicting severity of Clostridioides difficile infection. PMID:33232301
Integrative Network Analysis of Predicted miRNA-Targets Regulating Expression of Immune Response Genes in Bovine Coronavirus Infection. PMID:33193717
Approaching Inflammation Paradoxes-Proinflammatory Cytokine Blockages Induce Inflammatory Regulators. PMID:33193322
The sino-nasal warzone: transcriptomic and genomic studies on sino-nasal aspergillosis in dogs. PMID:33184275
Tear proteomics of orbital decompression for disfiguring exophthalmos in inactive thyroid-associated ophthalmopathy. PMID:33178351
A network medicine approach to investigation and population-based validation of disease manifestations and drug repurposing for COVID-19. PMID:33156843
Multi-omics-based identification of SARS-CoV-2 infection biology and candidate drugs against COVID-19. PMID:33131530
A Progressive Loss of phosphoSer138-Profilin Aligns with Symptomatic Course in the R6/2 Mouse Model of Huntington's Disease: Possible Sex-Dependent Signaling. PMID:33108594
Proteome analysis of bronchoalveolar lavage fluids reveals host and fungal proteins highly expressed during invasive pulmonary aspergillosis in mice and humans. PMID:33043780
Immunobiotic Lactobacillus jensenii TL2937 Alleviates Dextran Sodium Sulfate-Induced Colitis by Differentially Modulating the Transcriptomic Response of Intestinal Epithelial Cells. PMID:33042131
Development and validation of a robust immune-related prognostic signature in early-stage lung adenocarcinoma. PMID:33028329
PPARγ Cistrome Repression during Activation of Lung Monocyte-Macrophages in Severe COVID-19. PMID:33015591
Genome-wide postnatal changes in immunity following fetal inflammatory response. PMID:33006196
Systematic analysis of immune-related genes based on a combination of multiple databases to build a diagnostic and a prognostic risk model for hepatocellular carcinoma. PMID:32989553
Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults. PMID:32963231
SARS-CoV-2 transcriptome analysis and molecular cataloguing of immunodominant epitopes for multi-epitope based vaccine design. PMID:32920121
A functionally defined high-density NRF2 interactome reveals new conditional regulators of ARE transactivation. PMID:32911434
Predicting FOXM1-Mediated Gene Regulation through the Analysis of Genome-Wide FOXM1 Binding Sites in MCF-7, K562, SK-N-SH, GM12878 and ECC-1 Cell Lines. PMID:32858881
Systems Biology Approaches to Understanding the Human Immune System. PMID:32849587
Multidrug transporter MRP4/ABCC4 as a key determinant of pancreatic cancer aggressiveness. PMID:32848164
Analysis of Natural Selection of Immune Genes in Spinibarbus caldwelli by Transcriptome Sequencing. PMID:32793279
Rhinovirus Infection Drives Complex Host Airway Molecular Responses in Children With Cystic Fibrosis. PMID:32765492
A Network Medicine Approach to Investigation and Population-based Validation of Disease Manifestations and Drug Repurposing for COVID-19. PMID:32676577
Current Challenges in Vaccinology. PMID:32670279
Kinome profiling of peripheral blood mononuclear cells collected prior to vaccination reveals biomarkers and potential mechanisms of vaccine unresponsiveness in pigs. PMID:32665671
Development of caecaloids to study host-pathogen interactions: new insights into immunoregulatory functions of Trichuris muris extracellular vesicles in the caecum. PMID:32659277
Cancer systems immunology. PMID:32657757
Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding. PMID:32649757
A three-tiered integrative analysis of transcriptional data reveals the shared pathways related to heart failure from different aetiologies. PMID:32638546
Bioinformatic analysis of the potential molecular mechanism of PAK7 expression in glioblastoma. PMID:32626960
Key miRNAs associated with memory and learning disorder upon exposure to sevoflurane determined by RNA sequencing. PMID:32626949
Detecting pathogenic variants in autoimmune diseases using high-throughput sequencing. PMID:32623783
Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration. PMID:32605588
Integration of genomics, metagenomics, and metabolomics to identify interplay between susceptibility alleles and microbiota in adenoma initiation. PMID:32600361
Time-resolved mRNA and miRNA expression profiling reveals crucial coregulation of molecular pathways involved in epithelial-pneumococcal interactions. PMID:32592597
Cell-of-Origin Subtyping of Diffuse Large B-Cell Lymphoma by Using a qPCR-based Gene Expression Assay on Formalin-Fixed Paraffin-Embedded Tissues. PMID:32582543
Predicting Self-Interacting Proteins Using a Recurrent Neural Network and Protein Evolutionary Information. PMID:32550764
Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19. PMID:32550253
Regional Dichotomy in Enteric Mucosal Immune Responses to a Persistent Mycobacterium avium ssp. paratuberculosis Infection. PMID:32547548
Dynamic rewiring of the human interactome by interferon signaling. PMID:32539747
PINOT: an intuitive resource for integrating protein-protein interactions. PMID:32527260
Differential regulation of the immune system in a brain-liver-fats organ network during short-term fasting. PMID:32526449
Omics Integration Analyses Reveal the Early Evolution of Malignancy in Breast Cancer. PMID:32512721
Molecular basis of mood and cognitive adverse events elucidated via a combination of pharmacovigilance data mining and functional enrichment analysis. PMID:32504122
Airway Epithelial Cell Immunity Is Delayed During Rhinovirus Infection in Asthma and COPD. PMID:32499788
From Beef to Bees: High-Throughput Kinome Analysis to Understand Host Responses of Livestock Species to Infectious Diseases and Industry-Associated Stress. PMID:32499776
Linking indirect effects of cytomegalovirus in transplantation to modulation of monocyte innate immune function. PMID:32494628
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology. PMID:32484539
Whole blood transcriptional responses of very preterm infants during late-onset sepsis. PMID:32479514
Microarray profile of B cells from Graves' disease patients reveals biomarkers of proliferation. PMID:32432440
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology. PMID:32484539
Whole blood transcriptional responses of very preterm infants during late-onset sepsis. PMID:32479514
Microarray profile of B cells from Graves' disease patients reveals biomarkers of proliferation. PMID:32432440
Infection of Monocytes From Tuberculosis Patients With Two Virulent Clinical Isolates of Mycobacterium tuberculosis Induces Alterations in Myeloid Effector Functions. PMID:32391286
The importance of reporting house dust mite endotoxin abundance: impact on the lung transcriptome. PMID:32320279
The Potential Role of Complement System in the Progression of Ovarian Clear Cell Carcinoma Inferred from the Gene Ontology-Based Immunofunctionome Analysis. PMID:32316695
Ceramide launches an acute anti-adhesion pro-migration cell signaling program in response to chemotherapy. PMID:32307766
Reduced serum levels of pro-inflammatory chemokines in fragile X syndrome. PMID:32295518
MicroRNA-1202 plays a vital role in osteoarthritis via KCNQ1OT1 has-miR-1202-ETS1 regulatory pathway. PMID:32252801
Aberrant cell migration contributes to defective airway epithelial repair in childhood wheeze. PMID:32208383
OXPHOS remodeling in high-grade prostate cancer involves mtDNA mutations and increased succinate oxidation. PMID:32198407
ADH7, miR-3065 and LINC01133 are associated with cervical cancer progression in different age groups. PMID:32194732
Transcriptome Analysis of The Inflammatory Responses of Bovine Mammary Epithelial Cells: Exploring Immunomodulatory Target Genes for Bovine Mastitis. PMID:32182886
Anxiolytic Drug FGIN-1-27 Ameliorates Autoimmunity by Metabolic Reprogramming of Pathogenic Th17 Cells. PMID:32111885
A Hybrid Model for Predicting Pattern Recognition Receptors Using Evolutionary Information. PMID:32082326
Discovering the genes mediating the interactions between chronic respiratory diseases in the human interactome. PMID:32041952
Identification of an immune-related risk signature for predicting prognosis in clear cell renal cell carcinoma. PMID:32028264
Mechanisms of Mixed Th1/Th2 Responses in Mice Induced by Albizia julibrissin Saponin Active Fraction by in Silico Analysis. PMID:32012760
Identification of Novel Genes and Biological Pathways That Overlap in Infectious and Nonallergic Diseases of the Upper and Lower Airways Using Network Analyses. PMID:32010199
Blood signatures for second stage human African trypanosomiasis: a transcriptomic approach. PMID:32000760
Integrated bioinformatics analysis of potential pathway biomarkers using abnormal proteins in clubfoot. PMID:31998564
Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D. PMID:31980649
Integrated Analysis of Methylome and Transcriptome Changes Reveals the Underlying Regulatory Signatures Driving Curly Wool Transformation in Chinese Zhongwei Goats. PMID:31969898
Mechanical forces induce an asthma gene signature in healthy airway epithelial cells. PMID:31969610
Transcriptome Modifications in the Porcine Intramuscular Adipocytes during Differentiation and Exogenous Stimulation with TNF-α and Serotonin. PMID:31963662
Proteome-wide analysis of T-cell response to BK polyomavirus in healthy virus carriers and kidney transplant recipients reveals a unique transcriptional and functional profile. PMID:31956413
Machine learning approaches and databases for prediction of drug-target interaction: a survey paper. PMID:31950972
Genomic programming of IRF4-expressing human Langerhans cells. PMID:31949143
De novo variants in exomes of congenital heart disease patients identify risk genes and pathways. PMID:31941532
LncRNA XIST serves as a ceRNA to regulate the expression of ASF1A, BRWD1M, and PFKFB2 in kidney transplant acute kidney injury via sponging hsa-miR-212-3p and hsa-miR-122-5p. PMID:31914881
Identification of self-interacting proteins by integrating random projection classifier and finite impulse response filter. PMID:31881833
Analysis of Differentially Expressed Genes in Coronary Artery Disease by Integrated Microarray Analysis. PMID:31881747
aYAP modRNA reduces cardiac inflammation and hypertrophy in a murine ischemia-reperfusion model. PMID:31843959
A systematic analysis of immune genes and overall survival in cancer patients. PMID:31842801
Loss of IL-10 signaling in macrophages limits bacterial killing driven by prostaglandin E2. PMID:31819956
Multivariable regulation of gene expression plasticity in metazoans. PMID:31795914
Global Vectors Representation of Protein Sequences and Its Application for Predicting Self-Interacting Proteins with Multi-Grained Cascade Forest Model. PMID:31726752
Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool. PMID:31708960
Condemned or Not to Die? Gene Polymorphisms Associated With Cell Death in Pemphigus Foliaceus. PMID:31681304
Gene expression profiling in blood from cerebral malaria patients and mild malaria patients living in Senegal. PMID:31666081
Changes in the Composition of the Gut Microbiota and the Blood Transcriptome in Preterm Infants at Less than 29 Weeks Gestation Diagnosed with Bronchopulmonary Dysplasia. PMID:31662429
Dietary tryptophan links encephalogenicity of autoreactive T cells with gut microbial ecology. PMID:31653831
Conservation of cell-intrinsic immune responses in diverse nonhuman primate species. PMID:31649152
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data. PMID:31647099
A multiscale signalling network map of innate immune response in cancer reveals cell heterogeneity signatures. PMID:31641119
PathBank: a comprehensive pathway database for model organisms. PMID:31602464
A Genome-Wide Knockout Screen in Human Macrophages Identified Host Factors Modulating Salmonella Infection. PMID:31594818
iPSC-Derived Embryoid Bodies as Models of c-Met-Mutated Hereditary Papillary Renal Cell Carcinoma. PMID:31575031
Comparative transcriptomics between species attributes reactogenicity pathways induced by the capsular group B meningococcal vaccine, 4CMenB, to the membrane-bound endotoxin of its outer membrane vesicle component. PMID:31551511
Relative Contributions of Extracellular and Internalized Bacteria to Early Macrophage Proinflammatory Responses to Streptococcus pneumoniae. PMID:31551336
PBMCs transcriptome profiles identified breed-specific transcriptome signatures for PRRSV vaccination in German Landrace and Pietrain pigs. PMID:31536525
A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases. PMID:31494632
Innate Immune Dysfunction in Rosacea Promotes Photosensitivity and Vascular Adhesion Molecule Expression. PMID:31472105
Metabolomic, transcriptomic and genetic integrative analysis reveals important roles of adenosine diphosphate in haemostasis and platelet activation in non-small-cell lung cancer. PMID:31461552
Beneficial roles of probiotics on the modulation of gut microbiota and immune response in pigs. PMID:31461453
Neonatal T Follicular Helper Cells Are Lodged in a Pre-T Follicular Helper Stage Favoring Innate Over Adaptive Germinal Center Responses. PMID:31456798
Target Genes of Autism Risk Loci in Brain Frontal Cortex. PMID:31447881
Papillary Thyroid Carcinoma Variants are Characterized by Co-dysregulation of Immune and Cancer Associated Genes. PMID:31443155
IRNdb: the database of immunologically relevant non-coding RNAs. PMID:31414702
A genome-wide positioning systems network algorithm for in silico drug repurposing. PMID:31375661
Spatial chromatin architecture alteration by structural variations in human genomes at the population scale. PMID:31362752
Ileal interposition surgery targets the hepatic TGF-β pathway, influencing gluconeogenesis and mitochondrial bioenergetics in the UCD-T2DM rat model of diabetes. PMID:31307210
Landscape of innate immune system transcriptome and acute T cell-mediated rejection of human kidney allografts. PMID:31292297
In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR. PMID:31244651
Immune and environment-driven gene expression during invasion: An eco-immunological application of RNA-Seq. PMID:31236254
Transcriptome Modifications in Porcine Adipocytes via Toll-Like Receptors Activation. PMID:31191544
Immunological Molecular Responses of Human Retinal Pigment Epithelial Cells to Infection With Toxoplasma gondii. PMID:31118929
RNA sequencing of mesenchymal stem cells reveals a blocking of differentiation and immunomodulatory activities under inflammatory conditions in rheumatoid arthritis patients. PMID:31060598
Characterization of MicroRNA and Gene Expression Profiles Following Ricin Intoxication. PMID:31052539
Common patterns of gene regulation associated with Cesarean section and the development of islet autoimmunity - indications of immune cell activation. PMID:31000755
Understanding Human-Virus Protein-Protein Interactions Using a Human Protein Complex-Based Analysis Framework. PMID:30984872
Mining Featured Biomarkers Linked with Epithelial Ovarian CancerBased on Bioinformatics. PMID:30970615
Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites. PMID:30943267
Structural and Computational Characterization of Disease-Related Mutations Involved in Protein-Protein Interfaces. PMID:30934865
TET1 reprograms the epithelial ovarian cancer epigenome and reveals casein kinase 2α as a therapeutic target. PMID:30883733
An Improved Deep Forest Model for Predicting Self-Interacting Proteins From Protein Sequence Using Wavelet Transformation. PMID:30881376
Prioritization of genes involved in endothelial cell apoptosis by their implication in lymphedema using an analysis of associative gene networks with ANDSystem. PMID:30871556
Dynamic molecular changes during the first week of human life follow a robust developmental trajectory. PMID:30862783
Gene expression profiling meta-analysis reveals novel gene signatures and pathways shared between tuberculosis and rheumatoid arthritis. PMID:30845171
Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform. PMID:30795499
Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data. PMID:30763354
Streamlined computational pipeline for genetic background characterization of genetically engineered mice based on next generation sequencing data. PMID:30755158
Distinct pathological signatures in human cellular models of myotonic dystrophy subtypes. PMID:30730308
Novel protein constituents of pathological ocular pseudoexfoliation syndrome deposits identified with mass spectrometry. PMID:30713420
The Phenolic compound Kaempferol overcomes 5-fluorouracil resistance in human resistant LS174 colon cancer cells. PMID:30655588
Prediction of protein self-interactions using stacked long short-term memory from protein sequences information. PMID:30577794
Immune Gene Diversity in Archaic and Present-day Humans. PMID:30566634
Preliminary insights into the genetics of bank vole tolerance to Puumala hantavirus in Sweden. PMID:30519443
The BioGRID interaction database: 2019 update. PMID:30476227
Comparative Characterization of Osteoclasts Derived From Murine Bone Marrow Macrophages and RAW 264.7 Cells Using Quantitative Proteomics. PMID:30460336
Interactome mapping defines BRG1, a component of the SWI/SNF chromatin remodeling complex, as a new partner of the transcriptional regulator CTCF. PMID:30459231
Identification of key genes and miRNAs markers of papillary thyroid cancer. PMID:30414611
IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species. PMID:30407591
FUT2 Variants Confer Susceptibility to Familial Otitis Media. PMID:30401457
Key Immunological Functions Involved in the Progression of Epithelial Ovarian Serous Carcinoma Discovered by the Gene Ontology-Based Immunofunctionome Analysis. PMID:30356023
Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle. PMID:30335783
Exploration of Survival Traits, Probiotic Determinants, Host Interactions, and Functional Evolution of Bifidobacterial Genomes Using Comparative Genomics. PMID:30275399
Epithelial RNase H2 Maintains Genome Integrity and Prevents Intestinal Tumorigenesis in Mice. PMID:30273559
ATG16L1 orchestrates interleukin-22 signaling in the intestinal epithelium via cGAS-STING. PMID:30254094
A genome-wide association study for natural antibodies measured in blood of Canadian Holstein cows. PMID:30241501
Identification of candidate genes and proteins in aging skeletal muscle (sarcopenia) using gene expression and structural analysis. PMID:30202641
Hypercapnia Alters Expression of Immune Response, Nucleosome Assembly and Lipid Metabolism Genes in Differentiated Human Bronchial Epithelial Cells. PMID:30202079
Data on genome annotation and analysis of earthworm Eisenia fetida. PMID:30191166
Global landscape of mouse and human cytokine transcriptional regulation. PMID:30184180
Molecular mechanism of activated T cells in breast cancer. PMID:30174439
Novel candidate genes and variants underlying autosomal recessive neurodevelopmental disorders with intellectual disability. PMID:30167849
The NFκB subunit RELA is a master transcriptional regulator of the committed epithelial-mesenchymal transition in airway epithelial cells. PMID:30166344
Identification of novel immune-relevant drug target genes for Alzheimer's Disease by combining ontology inference with network analysis. PMID:30106219
Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli. PMID:30089658
The Cancer Omics Atlas: an integrative resource for cancer omics annotations. PMID:30089500
Characterization of peritoneal cells from cats with experimentally-induced feline infectious peritonitis (FIP) using RNA-seq. PMID:30086792
Factors Associated with Heritable Pulmonary Arterial Hypertension Exert Convergent Actions on the miR-130/301-Vascular Matrix Feedback Loop. PMID:30081553
Network-based approach to prediction and population-based validation of in silico drug repurposing. PMID:30002366
Improving Prediction of Self-interacting Proteins Using Stacked Sparse Auto-Encoder with PSSM profiles. PMID:29989064
A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease. PMID:29986096
Activation of the endoplasmic reticulum stress sensor IRE1α by the vaccine adjuvant AS03 contributes to its immunostimulatory properties. PMID:29977610
Immune signatures correlate with L1 retrotransposition in gastrointestinal cancers. PMID:29970450
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features. PMID:29927082
Cerebrospinal Fluid Concentrations of Neuronal Proteins Are Reduced in Primary Angiitis of the Central Nervous System. PMID:29922220
Circulating MicroRNAs: a Potential Biomarker for Cardiac Damage, Inflammatory Response, and Left Ventricular Function Recovery in Pediatric Viral Myocarditis. PMID:29916103
Stratification of candidate genes for Parkinson's disease using weighted protein-protein interaction network analysis. PMID:29898659
OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space. PMID:29878180
Group A Streptococcus M1T1 Intracellular Infection of Primary Tonsil Epithelial Cells Dampens Levels of Secreted IL-8 Through the Action of SpyCEP. PMID:29868516
Toll-Like Receptors Drive Specific Patterns of Tolerance and Training on Restimulation of Macrophages. PMID:29867935
The Role of Systems Biologic Approach in Cell Signaling and Drug Development Responses-A Mini Review. PMID:29848999
Retinoic acid elicits a coordinated expression of gut homing markers on T lymphocytes of Zambian men receiving oral Vivotif, but not Rotarix, Dukoral or OPVERO vaccines. PMID:29801999
Analysis of microRNAs in familial Mediterranean fever. PMID:29787577
Applications of Bayesian network models in predicting types of hematological malignancies. PMID:29725024
Involvement of Pro-Inflammatory Macrophages in Liver Pathology of Pirital Virus-Infected Syrian Hamsters. PMID:29724035
The senescence-associated secretory phenotype is potentiated by feedforward regulatory mechanisms involving Zscan4 and TAK1. PMID:29712904
Viral Induced Oxidative and Inflammatory Response in Alzheimer's Disease Pathogenesis with Identification of Potential Drug Candidates: A Systematic Review using Systems Biology Approach. PMID:29676229
Exposure to the gut microbiota drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development. PMID:29653584
MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae. PMID:29636015
Upregulated VEGFA and DLL4 act as potential prognostic genes for clear cell renal cell carcinoma. PMID:29618931
SPV: a JavaScript Signaling Pathway Visualizer. PMID:29590303
System analysis of the regulation of the immune response by CD147 and FOXC1 in cancer cell lines. PMID:29560120
Identification of Discriminating Metabolic Pathways and Metabolites in Human PBMCs Stimulated by Various Pathogenic Agents. PMID:29535640
An innate immune response and altered nuclear receptor activation defines the spinal cord transcriptome during alpha-tocopherol deficiency in Ttpa-null mice. PMID:29526809
Comparative Protein Interaction Network Analysis Identifies Shared and Distinct Functions for the Human ROCO Proteins. PMID:29513927
Identification of Shared Molecular Signatures Indicate the Susceptibility of Endometriosis to Multiple Sclerosis. PMID:29503661
In Vivo Phosphoproteome Analysis Reveals Kinome Reprogramming in Hepatocellular Carcinoma. PMID:29472430
Cholangiocarcinoma‑associated genes identified by integrative analysis of gene expression data. PMID:29436659
Histological subtypes of mouse mammary tumors reveal conserved relationships to human cancers. PMID:29346386
Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant. PMID:29259604
Informatics for cancer immunotherapy. PMID:29253114
Fibroblasts Promote Inflammation and Pain via IL-1α Induction of the Monocyte Chemoattractant Chemokine (C-C Motif) Ligand 2. PMID:29248462
Integrative gene network analysis identifies key signatures, intrinsic networks and host factors for influenza virus A infections. PMID:29214055
Modulation of Immune Signaling and Metabolism Highlights Host and Fungal Transcriptional Responses in Mouse Models of Invasive Pulmonary Aspergillosis. PMID:29213115
Identification and validation of a 44-gene expression signature for the classification of renal cell carcinomas. PMID:29208006
Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches. PMID:29186305
Analysis of the cancer genome atlas (TCGA) database identifies an inverse relationship between interleukin-13 receptor α1 and α2 gene expression and poor prognosis and drug resistance in subjects with glioblastoma multiforme. PMID:29168083
Analysis of the Human Mucosal Response to Cholera Reveals Sustained Activation of Innate Immune Signaling Pathways. PMID:29133347
Measuring bovine γδ T cell function at the site of Mycobacterium bovis infection. PMID:29129226
The UCSC Genome Browser database: 2018 update. PMID:29106570
Computational methods using weighed-extreme learning machine to predict protein self-interactions with protein evolutionary information. PMID:29086182
The Early Dendritic Cell Signaling Induced by Virulent Francisella tularensis Strain Occurs in Phases and Involves the Activation of Extracellular Signal-Regulated Kinases (ERKs) and p38 In the Later Stage. PMID:29046388
Plasmodium falciparum PfEMP1 Modulates Monocyte/Macrophage Transcription Factor Activation and Cytokine and Chemokine Responses. PMID:29038124
DNA Methylation and Transcription Patterns in Intestinal Epithelial Cells From Pediatric Patients With Inflammatory Bowel Diseases Differentiate Disease Subtypes and Associate With Outcome. PMID:29031501
Rapamycin-induced miR-21 promotes mitochondrial homeostasis and adaptation in mTORC1 activated cells. PMID:29029388
Host Transcription Profile in Nasal Epithelium and Whole Blood of Hospitalized Children Under 2 Years of Age With Respiratory Syncytial Virus Infection. PMID:29029245
Genomic Programming of Human Neonatal Dendritic Cells in Congenital Systemic and In Vitro Cytomegalovirus Infection Reveal Plastic and Robust Immune Pathway Biology Responses. PMID:28993767
Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis). PMID:28981529
Comparative proteomic analysis of growth hormone secretagogue A233 treatment of murine macrophage cells J774A.2 indicates it has a role in antiviral innate response. PMID:28955845
CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components. PMID:28929969
Predicted effects of observed changes in the mRNA and microRNA transcriptome of lung neutrophils during S. pneumoniae pneumonia in mice. PMID:28900269
Innate activation of human primary epithelial cells broadens the host response to Mycobacterium tuberculosis in the airways. PMID:28863187
MicroRNA profile in neosquamous esophageal mucosa following ablation of Barrett's esophagus. PMID:28852310
The porcine translational research database: a manually curated, genomics and proteomics-based research resource. PMID:28830355
mTOR regulates metabolic adaptation of APCs in the lung and controls the outcome of allergic inflammation. PMID:28798047
Equine skeletal muscle adaptations to exercise and training: evidence of differential regulation of autophagosomal and mitochondrial components. PMID:28793853
IL-1 Receptor-Knockout Mice Develop Epidermal Cysts and Show an Altered Innate Immune Response after Exposure to UVB Radiation. PMID:28754339
A time-resolved molecular map of the macrophage response to VSV infection. PMID:28725479
Preexisting antibodies can protect against congenital cytomegalovirus infection in monkeys. PMID:28679960
Prioritizing single-nucleotide polymorphisms and variants associated with clinical mastitis. PMID:28652783
Somatic mutations in clonally expanded cytotoxic T lymphocytes in patients with newly diagnosed rheumatoid arthritis. PMID:28635960
Computational analysis of multimorbidity between asthma, eczema and rhinitis. PMID:28598986
Integrative information theoretic network analysis for genome-wide association study of aspirin exacerbated respiratory disease in Korean population. PMID:28589859
NFPscanner: a webtool for knowledge-based deciphering of biomedical networks. PMID:28521733
Characterization of genetic aberrations in a single case of metastatic thymic adenocarcinoma. PMID:28506304
Network Analysis of the Systemic Response to Fasciola hepatica Infection in Sheep Reveals Changes in Fibrosis, Apoptosis, Toll-Like Receptors 3/4, and B Cell Function. PMID:28487699
Combined GWAS and 'guilt by association'-based prioritization analysis identifies functional candidate genes for body size in sheep. PMID:28454565
Ketogenic diet attenuates hepatopathy in mouse model of respiratory chain complex III deficiency caused by a Bcs1l mutation. PMID:28424480
STAT3 and NF-κB are Simultaneously Suppressed in Dendritic Cells in Lung Cancer. PMID:28350008
Preservation affinity in consensus modules among stages of HIV-1 progression. PMID:28320358
Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice. PMID:28283027
PBMC transcriptome profiles identifies potential candidate genes and functional networks controlling the innate and the adaptive immune response to PRRSV vaccine in Pietrain pig. PMID:28278192
Genetic Adaptation of Schizothoracine Fish to the Phased Uplifting of the Qinghai-Tibetan Plateau. PMID:28209761
Resolving host-pathogen interactions by dual RNA-seq. PMID:28207848
The evolution and functional diversification of the deubiquitinating enzyme superfamily. PMID:28177072
Genome-Wide Association Study of Polymorphisms Predisposing to Bronchiolitis. PMID:28139761
Comparative transcriptomics of elasmobranchs and teleosts highlight important processes in adaptive immunity and regional endothermy. PMID:28132643
Underexpression of Specific Interferon Genes Is Associated with Poor Prognosis of Melanoma. PMID:28114321
Tumor-induced Stromal STAT1 Accelerates Breast Cancer via Deregulating Tissue Homeostasis. PMID:28108623
Lysosome-Dependent Activation of Human Dendritic Cells by the Vaccine Adjuvant QS-21. PMID:28105029
A comprehensive platform for the analysis of ubiquitin-like protein modifications using in vivo biotinylation. PMID:28098257
A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. PMID:28065597
Identifying Candidate Reprogramming Genes in Mouse Induced Pluripotent Stem Cells. PMID:28063063
Validation of Immune Cell Modules in Multicellular Transcriptomic Data. PMID:28045996
Weighted Protein Interaction Network Analysis of Frontotemporal Dementia. PMID:28004582
Central Role of CD169+ Lymph Node Resident Macrophages in the Adjuvanticity of the QS-21 Component of AS01. PMID:27996000
Proteome-Scale Investigation of Protein Allosteric Regulation Perturbed by Somatic Mutations in 7,000 Cancer Genomes. PMID:27939638
A novel class of somatic mutations in blood detected preferentially in CD8+ cells. PMID:27932211
Cathelicidin Insufficiency in Patients with Fatal Leptospirosis. PMID:27812211
RNA-Seq Transcriptomic Responses of Full-Thickness Dermal Excision Wounds to Pseudomonas aeruginosa Acute and Biofilm Infection. PMID:27792773
Blood transcriptomic diagnosis of pulmonary and extrapulmonary tuberculosis. PMID:27734027
Identification of self-interacting proteins by exploring evolutionary information embedded in PSI-BLAST-constructed position specific scoring matrix. PMID:27732957
Selective Landscapes in newt Immune Genes Inferred from Patterns of Nucleotide Variation. PMID:27702815
Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease. PMID:27694142
Systems Biology-Based Investigation of Cellular Antiviral Drug Targets Identified by Gene-Trap Insertional Mutagenesis. PMID:27632082
A Cytokine Signalling Network for the Regulation of Inducible Nitric Oxide Synthase Expression in Rheumatoid Arthritis. PMID:27626941
Tcf4 Regulates Synaptic Plasticity, DNA Methylation, and Memory Function. PMID:27568567
Differential Biphasic Transcriptional Host Response Associated with Coevolution of Hemagglutinin Quasispecies of Influenza A Virus. PMID:27536272
Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs. PMID:27528396
microRNA regulatory circuits in a mouse model of inherited retinal degeneration. PMID:27527066
Haemopedia: An Expression Atlas of Murine Hematopoietic Cells. PMID:27499199
Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages. PMID:27486199
Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations. PMID:27480531
Distinct genetic architectures for syndromic and nonsyndromic congenital heart defects identified by exome sequencing. PMID:27479907
Herpes simplex encephalitis is linked with selective mitochondrial damage; a post-mortem and in vitro study. PMID:27457581
Classification of Colon Cancer Patients Based on the Methylation Patterns of Promoters. PMID:27445647
Transcriptome Profiling Reveals Disruption of Innate Immunity in Chronic Heavy Ethanol Consuming Female Rhesus Macaques. PMID:27427759
Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens. PMID:27403523
Widespread parainflammation in human cancer. PMID:27386949
Computational genomics tools for dissecting tumour-immune cell interactions. PMID:27376489
HPIDB 2.0: a curated database for host-pathogen interactions. PMID:27374121
Matricellular TSP-1 as a target of interest for impeding melanoma spreading: towards a therapeutic use for TAX2 peptide. PMID:27349907
Reconstruction and Application of Protein-Protein Interaction Network. PMID:27338356
Molecular and genetic inflammation networks in major human diseases. PMID:27303926
A Cross-Study Biomarker Signature of Human Bronchial Epithelial Cells Infected with Respiratory Syncytial Virus. PMID:27274726
Differential burden of rare protein truncating variants in Alzheimer's disease patients compared to centenarians. PMID:27260402
Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus. PMID:27245577
Site-specific characterization of N-linked glycosylation in human urinary glycoproteins and endogenous glycopeptides. PMID:27234710
Networks of Host Factors that Interact with NS1 Protein of Influenza A Virus. PMID:27199973
Burkholderia pseudomallei Capsule Exacerbates Respiratory Melioidosis but Does Not Afford Protection against Antimicrobial Signaling or Bacterial Killing in Human Olfactory Ensheathing Cells. PMID:27091931
The immunology of host defence peptides: beyond antimicrobial activity. PMID:27087664
Comprehensive Transcriptome Meta-analysis to Characterize Host Immune Responses in Helminth Infections. PMID:27058578
Using biological networks to integrate, visualize and analyze genomics data. PMID:27036106
Exploring regulatory networks of miR-96 in the developing inner ear. PMID:26988146
In Vivo Molecular Dissection of the Effects of HIV-1 in Active Tuberculosis. PMID:26986567
Transcriptional analysis of antiviral small molecule therapeutics as agonists of the RLR pathway. PMID:26981429
A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23. PMID:26960806
Unique gene expression profile in osteoarthritis synovium compared with cartilage: analysis of publicly accessible microarray datasets. PMID:26942917
Dynamic changes in global microRNAome and transcriptome reveal complex miRNA-mRNA regulated host response to Japanese Encephalitis Virus in microglial cells. PMID:26838068
Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes. PMID:26748513
Fundamentals of protein interaction network mapping. PMID:26681426
Targeting Innate Immunity for Antiviral Therapy through Small Molecule Agonists of the RLR Pathway. PMID:26676770
Antiviral innate immunity through the lens of systems biology. PMID:26657882
Transcriptomes reveal the genetic mechanisms underlying ionic regulatory adaptations to salt in the crab-eating frog. PMID:26619819
Genetic adaptations of the plateau zokor in high-elevation burrows. PMID:26602147
The direction of cross affects [corrected] obesity after puberty in male but not female offspring. PMID:26546267
Application of Functional Genomics for Bovine Respiratory Disease Diagnostics. PMID:26526746
Integrated interactions database: tissue-specific view of the human and model organism interactomes. PMID:26516188
Evolution of the highly networked deubiquitinating enzymes USP4, USP15, and USP11. PMID:26503449
The unique transcriptional response produced by concurrent estrogen and progesterone treatment in breast cancer cells results in upregulation of growth factor pathways and switching from a Luminal A to a Basal-like subtype. PMID:26498662
Cytoscape.js: a graph theory library for visualisation and analysis. PMID:26415722
Recent findings and technological advances in phosphoproteomics for cells and tissues. PMID:26400465
Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats. PMID:26377088
Identification of Genes Whose Expression Profile Is Associated with Non-Progression towards AIDS Using eQTLs. PMID:26367535
A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types. PMID:26352260
Meta-Analysis of Large-Scale Toxicogenomic Data Finds Neuronal Regeneration Related Protein and Cathepsin D to Be Novel Biomarkers of Drug-Induced Toxicity. PMID:26335687
Integrated inference and evaluation of host-fungi interaction networks. PMID:26300851
Transcriptional Profiling of Endobronchial Ultrasound-Guided Lymph Node Samples Aids Diagnosis of Mediastinal Lymphadenopathy. PMID:26270185
Mitochondrial Citrate Transporter-dependent Metabolic Signature in the 22q11.2 Deletion Syndrome. PMID:26221035
CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization. PMID:25953080
NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data. PMID:25950236
XRN1 stalling in the 5' UTR of Hepatitis C virus and Bovine Viral Diarrhea virus is associated with dysregulated host mRNA stability. PMID:25747802
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. PMID:25652942
Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy. PMID:25635527
Comparison of human cell signaling pathway databases--evolution, drawbacks and challenges. PMID:25632107
Network representations of immune system complexity. PMID:25625853
TimeXNet: identifying active gene sub-networks using time-course gene expression profiles. PMID:25522063
JUNB is a key transcriptional modulator of macrophage activation. PMID:25472994
Gene expression profiling studies in regenerating nerves in a mouse model for CMT1X: uninjured Cx32-knockout peripheral nerves display expression profile of injured wild type nerves. PMID:25447941
Multi-omic landscape of rheumatoid arthritis: re-evaluation of drug adverse effects. PMID:25414848
MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities. PMID:25378329
Functional consequences of somatic mutations in cancer using protein pocket-based prioritization approach. PMID:25360158
Bovine mastitis: frontiers in immunogenetics. PMID:25339959
Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks. PMID:25299147
HumanViCe: host ceRNA network in virus infected cells in human. PMID:25120561
Protein-protein interactions and genetic diseases: The interactome. PMID:24892209
Studying tumorigenesis through network evolution and somatic mutational perturbations in the cancer interactome. PMID:24881052
NetworkAnalyst--integrative approaches for protein-protein interaction network analysis and visual exploration. PMID:24861621
Signaling hypergraphs. PMID:24857424
Systems-level analysis of innate immunity. PMID:24655298
Transcriptome-based network analysis reveals a spectrum model of human macrophage activation. PMID:24530056
Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures. PMID:24432194
Consensus statement understanding health and malnutrition through a systems approach: the ENOUGH program for early life. PMID:24363221
Network portal: a database for storage, analysis and visualization of biological networks. PMID:24271392
Linking transcriptional changes over time in stimulated dendritic cells to identify gene networks activated during the innate immune response. PMID:24244133
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. PMID:24234451
Small RNA profiling of influenza A virus-infected cells identifies miR-449b as a regulator of histone deacetylase 1 and interferon beta. PMID:24086750
Capturing cooperative interactions with the PSI-MI format. PMID:24067240
MicroRNA profiling of Sendai virus-infected A549 cells identifies miR-203 as an interferon-inducible regulator of IFIT1/ISG56. PMID:23785202
INMEX--a web-based tool for integrative meta-analysis of expression data. PMID:23766290 - http://dx.doi.org/10.1093/nar/gks1147
- http://dx.doi.org/10.1038/msb.2008.55
Tags:
Tags
More detailed information about this field from each metasource.
curated information
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
immunity
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
interactome
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
pathway model
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
immunological databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
bovine
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
genes
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
human
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
immune response
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
interactomes
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
molecular interaction network
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
mouse
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
proteins
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
rna
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
systems biology
metasource: re3data.org
version: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:57.047375
Tags
More detailed information about this field from each metasource.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
immunity
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
interactome
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
pathway model
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: InnateDB; InnateDB; DOI: https://doi.org/10.25504/FAIRsharing.rb2drw; Last edited: April 26, 2021, 3:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
immunological databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
bovine
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
genes
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
human
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
immune response
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
interactomes
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
molecular interaction network
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
mouse
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
proteins
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
rna
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
systems biology
metasource: re3data.orgversion: re3data.org: InnateDB; editing status 2022-06-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36S43 last accessed: 2022-11-04
protein interactions
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:57.047375
immunity interactome molecular interaction pathway model protein protein interaction immunology bovine gene human immune response interactomes molecular interaction network mouse proteins rna systems biology protein interaction
Need help integrating and/or managing biomedical data?