PRINTS
Names
More detailed information about this field from each metasource.
PRINTS
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
PRINTS protein motif fingerprint database
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.949570
prints
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.949570
Names
More detailed information about this field from each metasource.
PRINTS
metasource: Fairsharing.orgversion: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
PRINTS protein motif fingerprint database
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
prints
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
Other names: PRINTS protein motif fingerprint database, prints
Names
More detailed information about this field from each metasource.
PRINTS
metasource: Fairsharing.orgversion: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
PRINTS protein motif fingerprint database
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
prints
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
PRINTS is a collection of groups of conserved protein motifs, called fingerprints, used to define a protein family. A fingerprint is a group of conserved motifs used to characterize a protein family. Usually, the motifs do not overlap, though they may be contiguous in 3D space. Fingerprints can encode protein folds and functionalities more flexibly than single motifs. Please note that the last release of this database on the PRINTS website was in 2007.
Description
More detailed information about this field from each metasource.
PRINTS is a collection of groups of conserved protein motifs, called fingerprints, used to define a protein family. A fingerprint is a group of conserved motifs used to characterize a protein family. Usually, the motifs do not overlap, though they may be contiguous in 3D space. Fingerprints can encode protein folds and functionalities more flexibly than single motifs. Please note that the last release of this database on the PRINTS website was in 2007.
metasource: Fairsharing.orgversion: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The PRINTS database houses a collection of protein family fingerprints. These may be used to make familial and tentative functional assignments for uncharacterised sequences. The June 2003 release (version 37.0) includes 1,850 fingerprints, encoding ~11,000 motifs, covering a range of globular and membrane proteins, modular polypeptides, and so on. The database specialises in the provisional of hierarchical classifications of protein superfamilies, allowing fine-grained diagnoses - as such, it provides the bulk of the hierarchical family annotation in InterPro. PRINTS also underpins the Blocks database from Seattle and eMOTIF resource from Stanford. It is available for BLAST, fingerprint and text searches at http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
A compendium of protein fingerprints, or group of conserved motifs used to characterise a protein family.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
Webpage:
http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/PRINTS.htmlWebpage
More detailed information about this field from each metasource.
http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/PRINTS.html
metasource: Fairsharing.orgversion: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
Publications:
Publications
More detailed information about this field from each metasource.
PRINTS and its automatic supplement, prePRINTS
PMID: 12520033
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012
PMID: 22508994
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
FingerPRINTScan: intelligent searching of the PRINTS motif database
PMID: 10705433
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/protein/7.7.841
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.949570
Publications
More detailed information about this field from each metasource.
PRINTS and its automatic supplement, prePRINTS
PMID: 12520033
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012
PMID: 22508994
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
FingerPRINTScan: intelligent searching of the PRINTS motif database
PMID: 10705433
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://dx.doi.org/10.1093/protein/7.7.841
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
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PRINTS and its automatic supplement, prePRINTS
PubMed citations: 136.
136 articles citing: PRINTS and its automatic supplement, prePRINTS
Untargeted Proteomics-Based Approach to Investigate Unintended Changes in Genetically Modified Maize for Environmental Risk Assessment Purpose. PMID:35295118
The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids. PMID:33642574
The Draft Genome of Red Lechwe, Kobus leche leche. PMID:33250921
GPCR-PEnDB: a database of protein sequences and derived features to facilitate prediction and classification of G protein-coupled receptors. PMID:33216895
Identification and Purification of Potential Bioactive Peptide of Moringa oleifera Seed Extracts. PMID:33120901
In Silico, Molecular Docking and In Vitro Antimicrobial Activity of the Major Rapeseed Seed Storage Proteins. PMID:33013372
Large-scale tethered function assays identify factors that regulate mRNA stability and translation. PMID:32807991
A draft genome assembly of spotted hyena, Crocuta crocuta. PMID:32345970
Bioinformatics for Renal and Urinary Proteomics: Call for Aggrandization. PMID:32024005
Draft Genome of the Asian Buffalo Leech Hirudinaria manillensis. PMID:32010187
Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis). PMID:31878322
A draft genome assembly of the solar-powered sea slug Elysia chlorotica. PMID:30778257
The draft genomes of five agriculturally important African orphan crops. PMID:30535374
Identification of the Autochaperone Domain in the Type Va Secretion System (T5aSS): Prevalent Feature of Autotransporters with a β-Helical Passenger. PMID:29375499
The complete mitochondrial genome of the grooved carpet shell, Ruditapes decussatus (Bivalvia, Veneridae). PMID:28848689
Sequencing, de novo assembling, and annotating the genome of the endangered Chinese crocodile lizard Shinisaurus crocodilurus. PMID:28595343
On patterns and re-use in bioinformatics databases. PMID:28525546
Protein Bioinformatics Databases and Resources. PMID:28150231
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
TOPDOM: database of conservatively located domains and motifs in proteins. PMID:27153630
Focused Analysis of Exome Sequencing Data for Rare Germline Mutations in Familial and Sporadic Lung Cancer. PMID:26762739
The language of the protein universe. PMID:26451980
The PFP and ESG protein function prediction methods in 2014: effect of database updates and ensemble approaches. PMID:26380077
INTEGRATING COMPUTATIONAL PROTEIN FUNCTION PREDICTION INTO DRUG DISCOVERY INITIATIVES. PMID:25530654
Homopharma: a new concept for exploring the molecular binding mechanisms and drug repurposing. PMID:25521038
Think globally and solve locally: secondary memory-based network learning for automated multi-species function prediction. PMID:24843788
MP3: a software tool for the prediction of pathogenic proteins in genomic and metagenomic data. PMID:24736651
Annotation extension through protein family annotation coherence metrics. PMID:24130572
Common and pathogen-specific virulence factors are different in function and structure. PMID:23863604
Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus. PMID:23671567
In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment. PMID:23514353
Space-related pharma-motifs for fast search of protein binding motifs and polypharmacological targets. PMID:23281852
Text-mining solutions for biomedical research: enabling integrative biology. PMID:23150036
Comparative proteome analysis of Milnesium tardigradum in early embryonic state versus adults in active and anhydrobiotic state. PMID:23029181
Metagenomic analysis: the challenge of the data bonanza. PMID:22962339
Parasites, proteomes and systems: has Descartes' clock run out of time? PMID:22828391
GFam: a platform for automatic annotation of gene families. PMID:22790981
Functional assignment of metagenomic data: challenges and applications. PMID:22772835
The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012. PMID:22508994
The automatic annotation of bacterial genomes. PMID:22408191
A protein short motif search tool using amino acid sequence and their secondary structure assignment. PMID:22355226
Genome characterization of the oleaginous fungus Mortierella alpina. PMID:22174787
Microtubules in bacteria: Ancient tubulins build a five-protofilament homolog of the eukaryotic cytoskeleton. PMID:22162949
ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree. PMID:22121228
InterPro in 2011: new developments in the family and domain prediction database. PMID:22096229
Proteins: form and function. PMID:22095055
CADRE: the Central Aspergillus Data REpository 2012. PMID:22080563
Quantification of protein group coherence and pathway assignment using functional association. PMID:21929787
Computational approaches to selecting and optimising targets for structural biology. PMID:21906678
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. PMID:21472436
Disease and phenotype data at Ensembl. PMID:21400687
PRIDB: a Protein-RNA interface database. PMID:21071426
Mrt, a gene unique to fungi, encodes an oligosaccharide transporter and facilitates rhizosphere competency in Metarhizium robertsii. PMID:20837701
More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology. PMID:20686689
Genomic architecture of MHC-linked odorant receptor gene repertoires among 16 vertebrate species. PMID:20680261
PhenoFam-gene set enrichment analysis through protein structural information. PMID:20478033
FragKB: structural and literature annotation resource of conserved peptide fragments and residues. PMID:20305778
Proteomic analysis of tardigrades: towards a better understanding of molecular mechanisms by anhydrobiotic organisms. PMID:20224743
Annotation error in public databases: misannotation of molecular function in enzyme superfamilies. PMID:20011109
3PFDB--a database of best representative PSSM profiles (BRPs) of protein families generated using a novel data mining approach. PMID:19961575
GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains. PMID:19923231
MeMotif: a database of linear motifs in alpha-helical transmembrane proteins. PMID:19910368
Structural and functional constraints in the evolution of protein families. PMID:19756040
7TMRmine: a Web server for hierarchical mining of 7TMR proteins. PMID:19538753
Visualising biological data: a semantic approach to tool and database integration. PMID:19534744
seeMotif: exploring and visualizing sequence motifs in 3D structures. PMID:19477961
Aspergillus genomes and the Aspergillus cloud. PMID:19039001
SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny. PMID:19036790
ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes. PMID:18984624
InterPro: the integrative protein signature database. PMID:18940856
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. PMID:18849571
Splice-mediated Variants of Proteins (SpliVaP) - data and characterization of changes in signatures among protein isoforms due to alternative splicing. PMID:18831736
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks. PMID:18782832
Protein-ligand interaction prediction: an improved chemogenomics approach. PMID:18676415
Functional diversity of cysteine residues in proteins and unique features of catalytic redox-active cysteines in thiol oxidoreductases. PMID:18648218
Phylogenetic analyses suggest multiple changes of substrate specificity within the glycosyl hydrolase 20 family. PMID:18647384
Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools. PMID:18629171
Discovering sequence motifs with arbitrary insertions and deletions. PMID:18437229
TOPDOM: database of domains and motifs with conservative location in transmembrane proteins. PMID:18434342
Combining molecular dynamics and machine learning to improve protein function recognition. PMID:18229697
In silico characterization of proteins: UniProt, InterPro and Integr8. PMID:18219596
Gene characterization index: assessing the depth of gene annotation. PMID:18213364
AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update. PMID:17994256
Characterization of bacterial operons consisting of two tubulins and a kinesin-like gene by the novel Two-Step Gene Walking method. PMID:17942428
Quantitative sequence-function relationships in proteins based on gene ontology. PMID:17686158
Domain selection combined with improved cloning strategy for high throughput expression of higher eukaryotic proteins. PMID:17663785
Identification of sensory and signal-transducing domains in two-component signaling systems. PMID:17628134
Troponin T isoform expression is modulated during Atlantic halibut metamorphosis. PMID:17577411
A domain-based approach to predict protein-protein interactions. PMID:17567909
Comprehensive analysis of co-occurring domain sets in yeast proteins. PMID:17562021
Chemogenomic approaches to rational drug design. PMID:17533416
ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ. PMID:17526514
A kingdom-specific protein domain HMM library for improved annotation of fungal genomes. PMID:17425790
Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments. PMID:17369271
Membrane protein prediction methods. PMID:17367718
Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases. PMID:17367536
Motif kernel generated by genetic programming improves remote homology and fold detection. PMID:17254344
Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. PMID:17254327
New developments in the InterPro database. PMID:17202162
MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. PMID:17090593
Mining the Arabidopsis thaliana genome for highly-divergent seven transmembrane receptors. PMID:17064408
Fast index based algorithms and software for matching position specific scoring matrices. PMID:16930469
AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system. PMID:16855290
Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions. PMID:16602695
Phytome: a platform for plant comparative genomics. PMID:16381967
VMD: a community annotation database for oomycetes and microbial genomes. PMID:16381891
Support-vector-machine classification of linear functional motifs in proteins. PMID:16341901
Dioxygenases without requirement for cofactors: identification of amino acid residues involved in substrate binding and catalysis, and testing for rate-limiting steps in the reaction of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase. PMID:16187153
Effective function annotation through catalytic residue conservation. PMID:16037208
The MicrobesOnline Web site for comparative genomics. PMID:15998914
InterProScan: protein domains identifier. PMID:15980438
The TetR family of transcriptional repressors. PMID:15944459
Mammalian flavin-containing monooxygenases: structure/function, genetic polymorphisms and role in drug metabolism. PMID:15922018
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release. PMID:15784138
Novel activator of mannose-specific phosphotransferase system permease expression in Listeria innocua, identified by screening for pediocin AcH resistance. PMID:15746330
The path to enlightenment: making sense of genomic and proteomic information. PMID:15629052
The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines. PMID:15608182
InterPro, progress and status in 2005. PMID:15608177
eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity. PMID:15608172
The Universal Protein Resource (UniProt). PMID:15608167
Modeling the helicase domain of Brome mosaic virus 1a replicase. PMID:15597207
Computational identification and characterization of novel genes from legumes. PMID:15266052
FAN: fingerprint analysis of nucleotide sequences. PMID:15215463
Public web-based services from the European Bioinformatics Institute. PMID:15215339
Progress towards mapping the universe of protein folds. PMID:15128436
Segmentally variable genes: a new perspective on adaptation. PMID:15094797
High-throughput protein analysis integrating bioinformatics and experimental assays. PMID:14762202
FoldMiner: structural motif discovery using an improved superposition algorithm. PMID:14691242
MitoProteome: mitochondrial protein sequence database and annotation system. PMID:14681458
CADRE: the Central Aspergillus Data REpository. PMID:14681443
ESTHER, the database of the alpha/beta-hydrolase fold superfamily of proteins. PMID:14681380
Recent improvements to the PROSITE database. PMID:14681377
UniProt: the Universal Protein knowledgebase. PMID:14681372
LEAping to conclusions: a computational reanalysis of late embryogenesis abundant proteins and their possible roles. PMID:14583099
WU-Blast2 server at the European Bioinformatics Institute. PMID:12824421
Motif3D: Relating protein sequence motifs to 3D structure. PMID:12824320 -
The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012
PubMed citations: 74.
74 articles citing: The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012
ContactPFP: Protein function prediction using predicted contact information. PMID:35875419
Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence. PMID:35283890
The genome of medicinal leech (Whitmania pigra) and comparative genomic study for exploration of bioactive ingredients. PMID:35073842
Integrative genome, transcriptome, microRNA, and degradome analysis of water dropwort (Oenanthe javanica) in response to water stress. PMID:34848704
Duo: A Signature Based Method to Batch-Analyze Functional Similarities of Proteins. PMID:34475860
Schistosomiasis Drug Discovery in the Era of Automation and Artificial Intelligence. PMID:34135888
Draft genome of a biparental beetle species, Lethrus apterus. PMID:33902445
DbStRiPs: Database of structural repeats in proteins. PMID:33641184
The Origin and Evolution of Antistasin-like Proteins in Leeches (Hirudinida, Clitellata). PMID:33527140
Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. PMID:33467086
Genomic signatures of the evolution of defence against its natural enemies in the poisonous and medicinal plant Datura stramonium (Solanaceae). PMID:33441607
The InterPro protein families and domains database: 20 years on. PMID:33156333
Draft Genome Assembly of the Freshwater Apex Predator Wels Catfish (Silurus glanis) Using Linked-Read Sequencing. PMID:32917720
Improved Reference Genome for Cyclotella cryptica CCMP332, a Model for Cell Wall Morphogenesis, Salinity Adaptation, and Lipid Production in Diatoms (Bacillariophyta). PMID:32709619
Computational Prediction of Ubiquitination Proteins Using Evolutionary Profiles and Functional Domain Annotation. PMID:32476995
An improved high-quality genome assembly and annotation of Tibetan hulless barley. PMID:32385314
Identifying Acetylation Protein by Fusing Its PseAAC and Functional Domain Annotation. PMID:31867311
A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat. PMID:31685928
Machine learning-based chemical binding similarity using evolutionary relationships of target genes. PMID:31504818
Environmental conditions shape the nature of a minimal bacterial genome. PMID:31308405
Genome structure and evolution of Antirrhinum majus L. PMID:30692677
Draft genome sequence of Bacillus amyloliquefaciens subsp. plantarum strain Fito_F321, an endophyte microorganism from Vitis vinifera with biocontrol potential. PMID:30410642
InterPro in 2019: improving coverage, classification and access to protein sequence annotations. PMID:30398656
Highly Continuous Genome Assembly of Eurasian Perch (Perca fluviatilis) Using Linked-Read Sequencing. PMID:30355765
Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences. PMID:30165572
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling. PMID:30153857
A Pathogen-Responsive Leucine Rich Receptor Like Kinase Contributes to Fusarium Resistance in Cereals. PMID:29997638
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features. PMID:29927082
Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species. PMID:29700415
New computational approaches to understanding molecular protein function. PMID:29621256
Molecular Modeling of Cloned Bacillus subtilis Keratinase and Its Insinuation in Psoriasis Treatment Using Docking Studies. PMID:29151650
Visualizing the GPCR Network: Classification and Evolution. PMID:29138525
Functional classification of protein toxins as a basis for bioinformatic screening. PMID:29066768
De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read. PMID:28873963
BrEPS 2.0: Optimization of sequence pattern prediction for enzyme annotation. PMID:28750104
ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services. PMID:28620454
A Novel Mechanism for Protein Delivery by the Type 3 Secretion System for Extracellularly Secreted Proteins. PMID:28351918
APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins. PMID:28334975
The complex evolutionary history of aminoacyl-tRNA synthetases. PMID:28180287
The Streptococcus gordonii Adhesin CshA Protein Binds Host Fibronectin via a Catch-Clamp Mechanism. PMID:27920201
InterPro in 2017-beyond protein family and domain annotations. PMID:27899635
De-novo protein function prediction using DNA binding and RNA binding proteins as a test case. PMID:27869118
Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages. PMID:27642638
Born blonde: a recessive loss-of-function mutation in the melanocortin 1 receptor is associated with cream coat coloration in Antarctic fur seals. PMID:27547348
Machine Learning of Protein Interactions in Fungal Secretory Pathways. PMID:27441920
Reannotation of Yersinia pestis Strain 91001 Based on Omics Data. PMID:27382076
The Ensembl gene annotation system. PMID:27337980
Comparative Protein Structure Modeling Using MODELLER. PMID:27322406
DFLpred: High-throughput prediction of disordered flexible linker regions in protein sequences. PMID:27307636
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations. PMID:26994912
Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois). PMID:26789269
Why do Sequence Signatures Predict Enzyme Mechanism? Homology versus Chemistry. PMID:26740739
Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics. PMID:26656885
Diversity in protein domain superfamilies. PMID:26451979
Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View. PMID:26366735
The history of the CATH structural classification of protein domains. PMID:26253692
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels. PMID:26035711
The InterPro protein families database: the classification resource after 15 years. PMID:25428371
Complete genome sequence of the Radiation-Resistant bacterium Rubrobacter radiotolerans RSPS-4. PMID:25197483
From sequence to enzyme mechanism using multi-label machine learning. PMID:24885296
BambooGDB: a bamboo genome database with functional annotation and an analysis platform. PMID:24602877
HMPAS: Human Membrane Protein Analysis System. PMID:24564858
Citrus sinensis annotation project (CAP): a comprehensive database for sweet orange genome. PMID:24489955
InterProScan 5: genome-scale protein function classification. PMID:24451626
A tale of two drug targets: the evolutionary history of BACE1 and BACE2. PMID:24381583
topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins. PMID:24302577
Do plants contain g protein-coupled receptors? PMID:24246381
SeqDepot: streamlined database of biological sequences and precomputed features. PMID:24234005
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data. PMID:24165880
Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis. PMID:24147765
Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus. PMID:23671567
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). PMID:23263233
ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species. PMID:23180770
Comparative protein structure modeling using Modeller. PMID:18428767 -
FingerPRINTScan: intelligent searching of the PRINTS motif database
PubMed citations: 23.
23 articles citing: FingerPRINTScan: intelligent searching of the PRINTS motif database
Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition. PMID:31341205
A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies. PMID:27363390
Comparative transcriptome profiling approach to glean virulence and immunomodulation-related genes of Fasciola hepatica. PMID:25956885
Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples. PMID:23521802
Hybrid sequencing approach applied to human fecal metagenomic clone libraries revealed clones with potential biotechnological applications. PMID:23082187
GFam: a platform for automatic annotation of gene families. PMID:22790981
The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012. PMID:22508994
Evolutionary history of tissue kallikreins. PMID:21072173
Significant speedup of database searches with HMMs by search space reduction with PSSM family models. PMID:19828575
The Molecule Pages database. PMID:17965093
Using structural motif descriptors for sequence-based binding site prediction. PMID:17570148
A canonical FtsZ protein in Verrucomicrobium spinosum, a member of the Bacterial phylum Verrucomicrobia that also includes tubulin-producing Prosthecobacter species. PMID:17349062
Fast index based algorithms and software for matching position specific scoring matrices. PMID:16930469
AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system. PMID:16855290
InterProScan: protein domains identifier. PMID:15980438
MitoProteome: mitochondrial protein sequence database and annotation system. PMID:14681458
PCAS--a precomputed proteome annotation database resource. PMID:14594458
Motif3D: Relating protein sequence motifs to 3D structure. PMID:12824320
PRINTS and its automatic supplement, prePRINTS. PMID:12520033
PRINTS and PRINTS-S shed light on protein ancestry. PMID:11752304
HUNT: launch of a full-length cDNA database from the Helix Research Institute. PMID:11125086
Current awareness. PMID:10900461
PRINTS-S: the database formerly known as PRINTS. PMID:10592232 - http://dx.doi.org/10.1093/protein/7.7.841
Tags:
Tags
More detailed information about this field from each metasource.
binding motif
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein domain
metasource: Fairsharing.org
version: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein sequence motifs and active sites
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.949570
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.949570
sequence sites, features and motifs
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.949570
Tags
More detailed information about this field from each metasource.
binding motif
metasource: Fairsharing.orgversion: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein domain
metasource: Fairsharing.orgversion: FAIRsharing.org: PRINTS; PRINTS; DOI: https://doi.org/10.25504/FAIRsharing.h8r843; Last edited: March 4, 2021, 2:31 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein sequence motifs and active sites
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
gene and protein families
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
sequence sites, features and motifs
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.949570
binding motif protein protein domain protein sequence protein sequence motifs and active sites gene and protein families proteins sequence sites, features and motifs
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