R30P93 last accessed: 2022-11-04

Virus Pathogen Resource (ViPR)
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

vipr
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

Other names: ViPR, Virus Pathogen Resource, Virus Pathogen Resource (ViPR), vipr

The Virus Pathogen Database and Analysis Resource (ViPR) is an integrated repository of data and analysis tools for multiple virus families, supported by the National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Centers (BRC) program. ViPR captures various types of information, including sequence records, gene and protein annotations, 3D protein structures, immune epitope locations, clinical and surveillance metadata and novel data derived from comparative genomics analysis. The database is available without charge as a service to the virology research community to help facilitate the development of diagnostics, prophylactics and therapeutics for priority pathogens and other viruses.

Webpage:

http://www.viprbrc.org

Licence:

Name: other
URL: https://www.viprbrc.org/brcDocs/documents/ViPR_BROCHURE.pdf

Publications:

Publications
More detailed information about this field from each metasource.

ViPR: an open bioinformatics database and analysis resource for virology research
PMID: 22006842
metasource: Fairsharing.org
version: FAIRsharing.org: ViPR; Virus Pathogen Database and Analysis Resource; DOI: https://doi.org/10.25504/FAIRsharing.2qx8n8; Last edited: March 27, 2020, 11:08 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community
PMID: 23202522
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

http://dx.doi.org/10.1093/nar/GKR859
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

ViPR: an open bioinformatics database and analysis resource for virology research PubMed citations: 310.

310 articles citing: ViPR: an open bioinformatics database and analysis resource for virology research

Enterovirus A Shows Unique Patterns of Codon Usage Bias in Conventional Versus Unconventional Clade. PMID:35909978
Genetic Characterization of a Novel Bovine Rotavirus A G37P[52] Closely Related to Human Strains. PMID:35909675
Human Coronavirus Spike Protein Based Multi-Epitope Vaccine against COVID-19 and Potential Future Zoonotic Coronaviruses by Using Immunoinformatic Approaches. PMID:35891314
Interspecies Isobaric Labeling-Based Quantitative Proteomics Reveals Protein Changes in the Ovary of Aedes aegypti Coinfected With ZIKV and Wolbachia. PMID:35873163
Molecular Communications in Viral Infections Research: Modeling, Experimental Data, and Future Directions. PMID:35782714
A Hepatitis C virus genotype 1b post-transplant isolate with high replication efficiency in cell culture and its adaptation to infectious virus production in vitro and in vivo. PMID:35763545
SARS CoV-2 (Delta Variant) Infection Kinetics and Immunopathogenesis in Domestic Cats. PMID:35746678
Simultaneous determination of HCV genotype and NS5B resistance associated substitutions using dried serum spots from São Paulo state, Brazil. PMID:35693474
Off-season RSV epidemics in Australia after easing of COVID-19 restrictions. PMID:35610217
Diverse human and bat-like rotavirus G3 strains circulating in suburban Bangkok. PMID:35609031
Bioinformatics for the Origin and Evolution of Viruses. PMID:35594020
Databases, Knowledgebases, and Software Tools for Virus Informatics. PMID:35594018
Codon usage signatures in Sabia and Chapare for host adaptation. PMID:35574503
Mutations in spike protein T cell epitopes of SARS-COV-2 variants: Plausible influence on vaccine efficacy. PMID:35568352
Decision tree based ensemble machine learning model for the prediction of Zika virus T-cell epitopes as potential vaccine candidates. PMID:35552469
Identification of Potential Vaccine Candidates Against SARS-CoV-2 to Fight COVID-19: Reverse Vaccinology Approach. PMID:35506029
Advanced Functions Embedded in the Second Version of Database, Global Evaluation of SARS-CoV-2/hCoV-19 Sequences 2. PMID:35479940
Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens. PMID:35471658
Unique Mode of Antiviral Action of a Marine Alkaloid against Ebola Virus and SARS-CoV-2. PMID:35458549
Human Alphacoronavirus Universal Primers for Genome Amplification and Sequencing. PMID:35401489
Genomic evolution of the Coronaviridae family. PMID:35398776
SHAPE-guided RNA structure homology search and motif discovery. PMID:35361788
PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences. PMID:35336792
Design of a Multi-Epitopes Vaccine against Hantaviruses: An Immunoinformatics and Molecular Modelling Approach. PMID:35335010
Contrasting roles for G-quadruplexes in regulating human Bcl-2 and virus homologues KSHV KS-Bcl-2 and EBV BHRF1. PMID:35322051
Evitar: designing anti-viral RNA therapies against future RNA viruses. PMID:35294970
Secondary Structure of Subgenomic RNA M of SARS-CoV-2. PMID:35215915
Spread of a Novel Indian Ocean Lineage Carrying E1-K211E/E2-V264A of Chikungunya Virus East/Central/South African Genotype across the Indian Subcontinent, Southeast Asia, and Eastern Africa. PMID:35208808
RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis. PMID:35075458
Detection of homologous recombination events in SARS-CoV-2. PMID:35037234
The 2017 Dengue virus 1 outbreak in northern Vietnam was caused by a locally circulating virus group. PMID:34983690
IDbSV: An Open-Access Repository for Monitoring SARS-CoV-2 Variations and Evolution. PMID:34966754
Phylogeography and Re-Evaluation of Evolutionary Rate of Powassan Virus Using Complete Genome Data. PMID:34943197
A novel ensemble fuzzy classification model in SARS-CoV-2 B-cell epitope identification for development of protein-based vaccine. PMID:34931117
iCAV: an integrative database of cancer-associated viruses. PMID:34907423
Regional Variation in Dengue Virus Serotypes in Sri Lanka and Its Clinical and Epidemiological Relevance. PMID:34829432
Metaviromic identification of discriminative genomic features in SARS-CoV-2 using machine learning. PMID:34812427
Immunoinformatics mapping of potential epitopes in SARS-CoV-2 structural proteins. PMID:34780495
Chikungunya virus molecular evolution in India since its re-emergence in 2005. PMID:34754512
A novel SARS-CoV-2 related coronavirus in bats from Cambodia. PMID:34753934
Identification of genotypic variants and its proteomic mutations of Brazilian SARS-CoV-2 isolates. PMID:34740719
Genomic surveillance of enterovirus associated with aseptic meningitis cases in southern Spain, 2015-2018. PMID:34728763
Complete genome sequence of GII.9 norovirus. PMID:34718885
MVIP: multi-omics portal of viral infection. PMID:34718748
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO). PMID:34710081
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure. PMID:34698547
Genetic Characterisation of South African and Mozambican Bovine Rotaviruses Reveals a Typical Bovine-like Artiodactyl Constellation Derived through Multiple Reassortment Events. PMID:34684257
High Prevalence of Coinfecting Enteropathogens in Suspected Rotavirus Vaccine Breakthrough Cases. PMID:34586890
EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species. PMID:34585726
A systematic bioinformatics approach for large-scale identification and characterization of host-pathogen shared sequences. PMID:34583643
Whole Genome Analysis of Human Rotaviruses Reveals Single Gene Reassortant Rotavirus Strains in Zambia. PMID:34578453
Evolutionary Signatures Governing the Codon Usage Bias in Coronaviruses and Their Implications for Viruses Infecting Various Bat Species. PMID:34578428
VGEA: an RNA viral assembly toolkit. PMID:34567846
In silico predictions of protein interactions between Zika virus and human host. PMID:34513323
A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic. PMID:34462471
Cross-Neutralisation of Novel Bombali Virus by Ebola Virus Antibodies and Convalescent Plasma Using an Optimised Pseudotype-Based Neutralisation Assay. PMID:34449756
An immunogenetic view of COVID-19. PMID:34436508
Molecular Mirror Technology Facilitates High-Throughput, Accurate SARS-CoV-2 Testing. PMID:34431687
Nanotechnology based solutions to combat zoonotic viruses with special attention to SARS, MERS, and COVID 19: Detection, protection and medication. PMID:34390768
To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element. PMID:34283611
Metagenomics: a path to understanding the gut microbiome. PMID:34259891
Safe-in-Man Broad Spectrum Antiviral Agents. PMID:34258746
Impact of SARS-CoV-2 variants on the total CD4+ and CD8+ T cell reactivity in infected or vaccinated individuals. PMID:34230917
Comprehensive Survey of Using Machine Learning in the COVID-19 Pandemic. PMID:34202587
Field and Molecular Epidemiology: How Viral Sequencing Changed Transmission Inferences in the First Portuguese SARS-CoV-2 Infection Cluster. PMID:34200621
Nucleic Acid Testing of SARS-CoV-2. PMID:34200331
The architecture of the SARS-CoV-2 RNA genome inside virion. PMID:34168138
First complete genome sequence and molecular characterization of Canine morbillivirus isolated in Central Brazil. PMID:34158515
Multilevel systems biology analysis of lung transcriptomics data identifies key miRNAs and potential miRNA target genes for SARS-CoV-2 infection. PMID:34157472
In-silico designing of epitope-based vaccine against the seven banded grouper nervous necrosis virus affecting fish species. PMID:34094807
Covid-19 diagnosis by combining RT-PCR and pseudo-convolutional machines to characterize virus sequences. PMID:34078924
Extensive C->U transition biases in the genomes of a wide range of mammalian RNA viruses; potential associations with transcriptional mutations, damage- or host-mediated editing of viral RNA. PMID:34061905
Mechanisms Underlying Host Range Variation in Flavivirus: From Empirical Knowledge to Predictive Models. PMID:34059925
A map of the SARS-CoV-2 RNA structurome. PMID:34046592
SARS-CoV-2 and other human coronavirus show genome patterns previously associated to reduced viral recognition and altered immune response. PMID:34021237
Targeting Conserved Sequences Circumvents the Evolution of Resistance in a Viral Gene Drive against Human Cytomegalovirus. PMID:34011551
Evaluation of Conserved RNA Secondary Structures within and between Geographic Lineages of Zika Virus. PMID:33919874
A computational approach to aid clinicians in selecting anti-viral drugs for COVID-19 trials. PMID:33907209
Web resources facilitate drug discovery in treatment of COVID-19. PMID:33892145
Microchip-based structure determination of low-molecular weight proteins using cryo-electron microscopy. PMID:33889923
Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State. PMID:33871357
Discriminating arboviral species. PMID:33830905
To knot or not to knot: Multiple conformations of the SARS-CoV-2 frameshifting RNA element. PMID:33821274
Biases in Viral Metagenomics-Based Detection, Cataloguing and Quantification of Bacteriophage Genomes in Human Faeces, a Review. PMID:33806607
In silico characterization of mutations circulating in SARS-CoV-2 structural proteins. PMID:33797336
Use of seroprevalence to guide dengue vaccination plans for older adults in a dengue non-endemic country. PMID:33793562
A comprehensive analysis and resource to use CRISPR-Cas13 for broad-spectrum targeting of RNA viruses. PMID:33778788
Clinical, Serological, Whole Genome Sequence Analyses to Confirm SARS-CoV-2 Reinfection in Patients From Mumbai, India. PMID:33768104
Structural and Drug Screening Analysis of the Non-structural Proteins of Severe Acute Respiratory Syndrome Coronavirus 2 Virus Extracted From Indian Coronavirus Disease 2019 Patients. PMID:33767730
Increased RNA virus population diversity improves adaptability. PMID:33767337
Comprehensive Quantitative Proteome Analysis of Aedes aegypti Identifies Proteins and Pathways Involved in Wolbachia pipientis and Zika Virus Interference Phenomenon. PMID:33716790
Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees. PMID:33688655
Viral evolution sustains a dengue outbreak of enhanced severity. PMID:33686914
A Half-Day Genome Sequencing Protocol for Middle East Respiratory Syndrome Coronavirus. PMID:33679631
Transcriptomic profiling and genomic mutational analysis of Human coronavirus (HCoV)-229E -infected human cells. PMID:33630927
In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19. PMID:33619344
SARS-CoV-2 Genomes From Oklahoma, United States. PMID:33613621
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through analysis of Viral Genomics and Structure. PMID:33594340
Differentially conserved amino acid positions may reflect differences in SARS-CoV-2 and SARS-CoV behaviour. PMID:33560365
The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2. PMID:33555346
SARSCOVIDB-A New Platform for the Analysis of the Molecular Impact of SARS-CoV-2 Viral Infection. PMID:33553941
Dynamics of a Dual SARS-CoV-2 Lineage Co-Infection on a Prolonged Viral Shedding COVID-19 Case: Insights into Clinical Severity and Disease Duration. PMID:33540596
The polybasic insert, the RBD of the SARS-CoV-2 spike protein, and the feline coronavirus - evolved or yet to evolve. PMID:33521335
A domain-based vaccine construct against SARS-CoV-2, the causative agent of COVID-19 pandemic: development of self-amplifying mRNA and peptide vaccines. PMID:33469510
Vaccines for Influenza. PMID:33466608
In silico T cell epitope identification for SARS-CoV-2: Progress and perspectives. PMID:33465451
Estimating the minimum number of SARS-CoV-2 infected cases needed to detect viral RNA in wastewater: To what extent of the outbreak can surveillance of wastewater tell us? PMID:33465345
Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229e. PMID:33463525
Globally defining the effects of mutations in a picornavirus capsid. PMID:33432927
A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons. PMID:33419731
Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin Populations. PMID:33396801
Structure and immune recognition of the porcine epidemic diarrhea virus spike protein. PMID:33378641
Virxicon: A Lexicon Of Viral Sequences. PMID:33367605
A review on viral data sources and search systems for perspective mitigation of COVID-19. PMID:33348368
NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index. PMID:33322070
Whole Genome Characterization and Evolutionary Analysis of G1P[8] Rotavirus A Strains during the Pre- and Post-Vaccine Periods in Mozambique (2012-2017). PMID:33291333
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. PMID:33279989
Epidemiology and Sequence-Based Evolutionary Analysis of Circulating Non-Polio Enteroviruses. PMID:33255654
A Novel Sub-Lineage of Chikungunya Virus East/Central/South African Genotype Indian Ocean Lineage Caused Sequential Outbreaks in Bangladesh and Thailand. PMID:33213040
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. PMID:33211869
Detection and Genetic Characterization of Viruses Present in Free-Ranging Snow Leopards Using Next-Generation Sequencing. PMID:33195503
Identification of Novel SARS-CoV-2 Drug Targets by Host MicroRNAs and Transcription Factors Co-regulatory Interaction Network Analysis. PMID:33173539
Monkeypox Virus in Nigeria: Infection Biology, Epidemiology, and Evolution. PMID:33167496
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements. PMID:33166999
Single molecule, near full-length genome sequencing of dengue virus. PMID:33097792
Mutations in membrane-fusion subunit of spike glycoprotein play crucial role in the recent outbreak of COVID-19. PMID:33090493
Whole Genome In-Silico Analysis of South African G1P[8] Rotavirus Strains Before and After Vaccine Introduction Over A Period of 14 Years. PMID:33066615
Computational perspectives revealed prospective vaccine candidates from five structural proteins of novel SARS corona virus 2019 (SARS-CoV-2). PMID:33062414
GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences. PMID:33045727
Biased Mutation and Selection in RNA Viruses. PMID:32986832
Analysis of G-quadruplexes upstream of herpesvirus miRNAs: evidence of G-quadruplex mediated regulation of KSHV miR-K12-1-9,11 cluster and HCMV miR-US33. PMID:32972365
Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine. PMID:32956362
Unlocking COVID therapeutic targets: A structure-based rationale against SARS-CoV-2, SARS-CoV and MERS-CoV Spike. PMID:32913581
The RNA secondary structural variation in the cyclization elements of the dengue genome and the possible implications in pathogenicity. PMID:32904896
Integrative analyses of SARS-CoV-2 genomes from different geographical locations reveal unique features potentially consequential to host-virus interaction, pathogenesis and clues for novel therapies. PMID:32844125
A genetic barcode of SARS-CoV-2 for monitoring global distribution of different clades during the COVID-19 pandemic. PMID:32841689
Methods for making multiple alignment of genomic sequences for severe acute respiratory syndrome coronavirus 2. PMID:32835005
In Silico Design of siRNAs Targeting Existing and Future Respiratory Viruses with VirusSi. PMID:32817944
Sequence-based prediction of SARS-CoV-2 vaccine targets using a mass spectrometry-based bioinformatics predictor identifies immunogenic T cell epitopes. PMID:32791978
Mapping Attenuation Determinants in Enterovirus-D68. PMID:32784424
Recognition of a highly conserved glycoprotein B epitope by a bivalent antibody neutralizing HCMV at a post-attachment step. PMID:32745149
The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2. PMID:32714120
Candidate Targets for Immune Responses to 2019-Novel Coronavirus (nCoV): Sequence Homology- and Bioinformatic-Based Predictions. PMID:32714104
Computational search for potential COVID-19 drugs from FDAapproved drugs and small molecules of natural origin identifies several anti-virals and plant products. PMID:32713863
Designing a multi-epitope vaccine against SARS-CoV-2: an immunoinformatics approach. PMID:32677533
Rapid and Sensitive Direct Detection and Identification of Poliovirus from Stool and Environmental Surveillance Samples by Use of Nanopore Sequencing. PMID:32611795
The Emergence of Chikungunya ECSA Lineage in a Mayaro Endemic Region on the Southern Border of the Amazon Forest. PMID:32604785
Designing a novel mRNA vaccine against SARS-CoV-2: An immunoinformatics approach. PMID:32599237
Comparative analysis of protein synthesis rate in COVID-19 with other human coronaviruses. PMID:32592845
COVID-19 Outbreak in Malaysia. PMID:32494567
NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline. PMID:32442274
Rotavirus infection in children in Southeast Asia 2008-2018: disease burden, genotype distribution, seasonality, and vaccination. PMID:32438911
Exploring Lassa Virus Proteome to Design a Multi-epitope Vaccine Through Immunoinformatics and Immune Simulation Analyses. PMID:32421065
Where do we Stand after Decades of Studying Human Cytomegalovirus? PMID:32397070
Serological Approaches for COVID-19: Epidemiologic Perspective on Surveillance and Control. PMID:32391022
Chlorcyclizine Inhibits Viral Fusion of Hepatitis C Virus Entry by Directly Targeting HCV Envelope Glycoprotein 1. PMID:32386595
Positive epistasis between viral polymerase and the 3' untranslated region of its genome reveals the epidemiologic fitness of dengue virus. PMID:32366663
Identification and molecular characterization of the first complete genome sequence of Human Parechovirus type 15. PMID:32317760
Immunogenicity and Efficacy of a Recombinant Human Adenovirus Type 5 Vaccine against Zika Virus. PMID:32272595
Ultrarapid diagnosis, microscope imaging, genome sequencing, and culture isolation of SARS-CoV-2. PMID:32270412
Genetic sequence changes related to the attenuation of avian infectious bronchitis virus strain TW2575/98. PMID:32232712
A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2. PMID:32183941
Matching Reads to Many Genomes with the r-Index. PMID:32181686
Composition of human-specific slow codons and slow di-codons in SARS-CoV and 2019-nCoV are lower than other coronaviruses suggesting a faster protein synthesis rate of SARS-CoV and 2019-nCoV. PMID:32178970
Preliminary Identification of Potential Vaccine Targets for the COVID-19 Coronavirus (SARS-CoV-2) Based on SARS-CoV Immunological Studies. PMID:32106567
NipahVR: a resource of multi-targeted putative therapeutics and epitopes for the Nipah virus. PMID:32090261
The origins of dengue and chikungunya viruses in Ecuador following increased migration from Venezuela and Colombia. PMID:32075576
Current Trends in Diagnostics of Viral Infections of Unknown Etiology. PMID:32074965
Genetic diversity and potential recombination between ferret coronaviruses from European and American lineages. PMID:32006540
Reporter Assays for Ebola Virus Nucleoprotein Oligomerization, Virion-Like Particle Budding, and Minigenome Activity Reveal the Importance of Nucleoprotein Amino Acid Position 111. PMID:31952352
Molecular epidemiology of infectious bronchitis virus in Poland from 1980 to 2017. PMID:31917362
Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia. PMID:31718580
What a Difference a Gene Makes: Identification of Virulence Factors of Cowpox Virus. PMID:31645446
Mat_peptide: comprehensive annotation of mature peptides from polyproteins in five virus families. PMID:31609421
Discrete viral E2 lysine residues and scavenger receptor MARCO are required for clearance of circulating alphaviruses. PMID:31596239
Personalized viral genomic investigation of herpes simplex virus 1 perinatal viremic transmission with dual fatality. PMID:31582464
ZIKAVID-Zika virus infection database: a new platform to analyze the molecular impact of Zika virus infection. PMID:31512145
A Structure-Informed Atlas of Human-Virus Interactions. PMID:31474372
A survey of known immune epitopes in the enteroviruses strains associated with acute flaccid myelitis. PMID:31451291
Molecular Epidemiology of Dengue in Panama: 25 Years of Circulation. PMID:31434193
Isolation and Full-Length Sequence Analysis of a Pestivirus from Aborted Lamb Fetuses in Italy. PMID:31412585
Spatio-temporal distribution analysis of circulating genotypes of dengue virus type 1 in western and southern states of India by a one-step real-time RT-PCR assay. PMID:31376506
Virus structures constrain transmission modes. PMID:31358983
IRAM: virus capsid database and analysis resource. PMID:31318422
Whole genome characterization and evolutionary analysis of OP354-like P[8] Rotavirus A strains isolated from Ghanaian children with diarrhoea. PMID:31199823
Assessing the Potential Interactions between Cellular miRNA and Arboviral Genomic RNA in the Yellow Fever Mosquito, Aedes aegypti. PMID:31185697
Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets. PMID:31167846
TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data. PMID:31164077
The Placental Atlas Tool (PAT): A collaborative research and discovery platform for the placental research community. PMID:31103066
The Third Annual Meeting of the European Virus Bioinformatics Center. PMID:31060321
Human Monoclonal Antibodies Potently Neutralize Zika Virus and Select for Escape Mutations on the Lateral Ridge of the Envelope Protein. PMID:31043537
Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing. PMID:31037220
Genome organization and molecular characterization of the three Formica exsecta viruses-FeV1, FeV2 and FeV4. PMID:30809424
Optimization of qRT-PCR assay for zika virus detection in human serum and urine. PMID:30742853
Capturing sequence diversity in metagenomes with comprehensive and scalable probe design. PMID:30718881
Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO). PMID:30660046
West Nile Virus-Inclusive Single-Cell RNA Sequencing Reveals Heterogeneity in the Type I Interferon Response within Single Cells. PMID:30626670
Human cytomegalovirus genomics and transcriptomics through the lens of next-generation sequencing: revision and future challenges. PMID:30604286
Molecular characterization of an outbreak of enterovirus-associated meningitis in Mossel Bay, South Africa, December 2015-January 2016. PMID:30594238
GLUE: a flexible software system for virus sequence data. PMID:30563445
Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein. PMID:30550577
Characterizing the Different Effects of Zika Virus Infection in Placenta and Microglia Cells. PMID:30453684
Transmissibility of emerging viral zoonoses. PMID:30403733
Immunoinformatics Approach for Epitope-Based Peptide Vaccine Design and Active Site Prediction against Polyprotein of Emerging Oropouche Virus. PMID:30402510
Revisiting Key Entry Routes of Human Epidemic Arboviruses into the Mainland Americas through Large-Scale Phylogenomics. PMID:30402454
UniProt: a worldwide hub of protein knowledge. PMID:30395287
ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of Influenza A virus in swine. PMID:30382842
Detection of Viruses in Clinical Samples by Use of Metagenomic Sequencing and Targeted Sequence Capture. PMID:30232133
Polyglutamine Repeats in Viruses. PMID:30182336
The Study of Viral RNA Diversity in Bird Samples Using De Novo Designed Multiplex Genus-Specific Primer Panels. PMID:30158979
Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic. PMID:30059496
Complete Genome Sequences of Four Novel Human Coronavirus OC43 Isolates Associated with Severe Acute Respiratory Infection. PMID:29798929
An Immunocompetent Mouse Model of Zika Virus Infection. PMID:29746837
Clinical and Molecular Epidemiology of Human Parainfluenza Viruses 1-4 in Children from Viet Nam. PMID:29717150
Genome-Wide Analysis to Identify HLA Factors Potentially Associated With Severe Dengue. PMID:29692780
The Effects of Sampling Location and Predictor Point Estimate Certainty on Posterior Support in Bayesian Phylogeographic Generalized Linear Models. PMID:29651124
Multiplexed Isothermal Amplification Based Diagnostic Platform to Detect Zika, Chikungunya, and Dengue 1. PMID:29608170
Virologists-Heroes need weapons. PMID:29420617
Origin and dispersal of Hepatitis E virus. PMID:29410449
Blocking Zika virus vertical transmission. PMID:29352135
Detection and full genome characterization of two beta CoV viruses related to Middle East respiratory syndrome from bats in Italy. PMID:29258555
Probing the antigenicity of hepatitis C virus envelope glycoprotein complex by high-throughput mutagenesis. PMID:29253863
Sequence Optimized Real-Time Reverse Transcription Polymerase Chain Reaction Assay for Detection of Crimean-Congo Hemorrhagic Fever Virus. PMID:29165231
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID:29123534
Overlapping CD8+ and CD4+ T-cell epitopes identification for the progression of epitope-based peptide vaccine from nucleocapsid and glycoprotein of emerging Rift Valley fever virus using immunoinformatics approach. PMID:29107145
Rotavirus A strains obtained from children with acute gastroenteritis in Mozambique, 2012-2013: G and P genotypes and phylogenetic analysis of VP7 and partial VP4 genes. PMID:29052059
Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral". PMID:29029728
Think globally, act locally: Phylodynamic reconstruction of infectious bronchitis virus (IBV) QX genotype (GI-19 lineage) reveals different population dynamics and spreading patterns when evaluated on different epidemiological scales. PMID:28880958
Genome Sequences of Three Novel Isolates of Human Parainfluenza Virus 2 Associated with Acute Respiratory Infection. PMID:28818896
Mutations in the E2 Glycoprotein and the 3' Untranslated Region Enhance Chikungunya Virus Virulence in Mice. PMID:28747508
Identification of putative unique immunogenic ZIKV and DENV1-4 peptides for diagnostic cellular based tests. PMID:28740150
Improved detection of genus-specific Alphavirus using a generic TaqMan® assay. PMID:28738838
Kanyawara Virus: A Novel Rhabdovirus Infecting Newly Discovered Nycteribiid Bat Flies Infesting Previously Unknown Pteropodid Bats in Uganda. PMID:28706276
Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses. PMID:28670016
RNA editing by the host ADAR system affects the molecular evolution of the Zika virus. PMID:28649357
Flavivirus and Filovirus EvoPrinters: New alignment tools for the comparative analysis of viral evolution. PMID:28622346
Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses. PMID:28562637
Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak. PMID:28512577
ImmunoNodes - graphical development of complex immunoinformatics workflows. PMID:28482806
Simultaneous detection of chikungunya virus, dengue virus and human pathogenic Leptospira genomes using a multiplex TaqMan® assay. PMID:28468604
Point of sampling detection of Zika virus within a multiplexed kit capable of detecting dengue and chikungunya. PMID:28427352
drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes. PMID:28369462
SilkPathDB: a comprehensive resource for the study of silkworm pathogens. PMID:28365723
The Host Microbiome Regulates and Maintains Human Health: A Primer and Perspective for Non-Microbiologists. PMID:28292977
Hendra virus fusion protein transmembrane domain contributes to pre-fusion protein stability. PMID:28213515
Rapid and sensitive real-time assay for the detection of respiratory syncytial virus using RT-SIBA®. PMID:28183291
Co-infecting Reptarenaviruses Can Be Vertically Transmitted in Boa Constrictor. PMID:28114434
Complete Genome Sequence of a Novel WU Polyomavirus Isolate from Arkansas, USA, Associated with Acute Respiratory Infection. PMID:28082496
Structure of the immature Zika virus at 9 Å resolution. PMID:28067914
viruSITE-integrated database for viral genomics. PMID:28025349
Virus Variation Resource - improved response to emergent viral outbreaks. PMID:27899678
Genome-wide analysis of G-quadruplexes in herpesvirus genomes. PMID:27871228
The European Classical Swine Fever Virus Database: Blueprint for a Pathogen-Specific Sequence Database with Integrated Sequence Analysis Tools. PMID:27827988
Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic. PMID:27814506
Molecular Evolution of Human Coronavirus Genomes. PMID:27743750
Complete Genome Sequences of Two Novel Isolates of Human Parainfluenza Virus 1 Associated with Acute Respiratory Infection. PMID:27738046
Evolution of codon usage in Zika virus genomes is host and vector specific. PMID:27729643
Influenza Research Database: An integrated bioinformatics resource for influenza virus research. PMID:27679478
EnsCat: clustering of categorical data via ensembling. PMID:27634377
Pathogen metadata platform: software for accessing and analyzing pathogen strain information. PMID:27634291
Immunodominant T-Cell Epitopes in the VP1 Capsid Protein of Rhinovirus Species A and C. PMID:27630239
A Library of Infectious Hepatitis C Viruses with Engineered Mutations in the E2 Gene Reveals Growth-Adaptive Mutations That Modulate Interactions with Scavenger Receptor Class B Type I. PMID:27630236
Intra-host dynamics of Ebola virus during 2014. PMID:27595345
Nonstructural Proteins Are Preferential Positive Selection Targets in Zika Virus and Related Flaviviruses. PMID:27588756
High diversity of picornaviruses in rats from different continents revealed by deep sequencing. PMID:27530749
HCVIVdb: The hepatitis-C IRES variation database. PMID:27527702
A review on host-pathogen interactions: classification and prediction. PMID:27470504
EbolaID: An Online Database of Informative Genomic Regions for Ebola Identification and Treatment. PMID:27441375
Human T cell responses to Japanese encephalitis virus in health and disease. PMID:27242166
Antagonism of the Sodium-Potassium ATPase Impairs Chikungunya Virus Infection. PMID:27222471
Molecular network, pathway, and functional analysis of time-dependent gene changes associated with pancreatic cancer susceptibility to oncolytic vaccinia virotherapy. PMID:27119120
Divergent Evolution of Nuclear Localization Signal Sequences in Herpesvirus Terminase Subunits. PMID:27033706
VIP: an integrated pipeline for metagenomics of virus identification and discovery. PMID:27026381
Conserved differences in protein sequence determine the human pathogenicity of Ebolaviruses. PMID:27009368
EPIPOX: Immunoinformatic Characterization of the Shared T-Cell Epitome between Variola Virus and Related Pathogenic Orthopoxviruses. PMID:26605344
Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France. PMID:26506370
Circulation of human metapneumovirus among children with influenza-like illness in Wuhan, China. PMID:26488078
Representing virus-host interactions and other multi-organism processes in the Gene Ontology. PMID:26215368
Recent strategies and progress in identifying host factors involved in virus replication. PMID:26112615
Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone. PMID:26091036
A comprehensive collection of systems biology data characterizing the host response to viral infection. PMID:25977790
A review on computational systems biology of pathogen-host interactions. PMID:25914674
Amino acid substitutions contributing to α2,6-sialic acid linkage binding specificity of human parainfluenza virus type 3 hemagglutinin-neuraminidase. PMID:25871520
A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway. PMID:25861210
Systematic serological testing for hepatitis E virus in kidney transplant recipients. PMID:25694530
The UCSC Ebola Genome Portal. PMID:25685613
Genome sequence of enterovirus D68 from St. Louis, Missouri, USA. PMID:25532062
High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology. PMID:25437800
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
NCBI viral genomes resource. PMID:25428358
Structural models for the design of novel antiviral agents against Greek Goat Encephalitis. PMID:25392762
Dengue virus 1 in Buenos Aires from 1999 to 2010: towards local spread. PMID:25343372
Identification of nucleotide-level changes impacting gene content and genome evolution in orthopoxviruses. PMID:25231308
Hepatitis E virus of subtype 3i in chronically infected kidney transplant recipients in southeastern France. PMID:25187634
Standardized metadata for human pathogen/vector genomic sequences. PMID:24936976
Discovery of rosavirus 2, a novel variant of a rodent-associated picornavirus, in children from The Gambia. PMID:24725928
Antiviral strategies for hepatitis E virus. PMID:24374149
A single-amino-acid polymorphism in Chikungunya virus E2 glycoprotein influences glycosaminoglycan utilization. PMID:24371059
The microbiome: stress, health and disease. PMID:24281320
Evolution and diversity in human herpes simplex virus genomes. PMID:24227835
Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes. PMID:24210098
Computational analysis of virus-host interactomes. PMID:23996253
New strategy for virus discovery: viruses identified in human feces in the last decade. PMID:23917840
A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase. PMID:23678398
Structural evidence for a bifurcated mode of action in the antibody-mediated neutralization of hepatitis C virus. PMID:23589879
Systems approaches to influenza-virus host interactions and the pathogenesis of highly virulent and pandemic viruses. PMID:23218769
Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community. PMID:23202522
EuPathDB: the eukaryotic pathogen database. PMID:23175615
Virtual interactomics of proteins from biochemical standpoint. PMID:22928109
The immune epitope database: a historical retrospective of the first decade. PMID:22681406
Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community PubMed citations: 67.

67 articles citing: Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community

Human Coronavirus Spike Protein Based Multi-Epitope Vaccine against COVID-19 and Potential Future Zoonotic Coronaviruses by Using Immunoinformatic Approaches. PMID:35891314
Advanced Molecular and Immunological Diagnostic Methods to Detect SARS-CoV-2 Infection. PMID:35744711
Revolutionized virome research using systems microbiology approaches. PMID:35723062
DrugVirus.info 2.0: an integrative data portal for broad-spectrum antivirals (BSA) and BSA-containing drug combinations (BCCs). PMID:35610052
Genome sequencing reveals existence of SARS-CoV-2 B.1.1.529 variant in Egypt. PMID:35543892
The unequivocal preponderance of biocomputation in clinical virology. PMID:35539262
Mono- and combinational drug therapies for global viral pandemic preparedness. PMID:35402870
Alphacoronavirus in a Daubenton's Myotis Bat (Myotis daubentonii) in Sweden. PMID:35336963
Genomic stratification and differential natural selection signatures among human norovirus genogroup II isolates. PMID:35322317
Secondary Structure of Subgenomic RNA M of SARS-CoV-2. PMID:35215915
Sheet, Surveillance, Strategy, Salvage and Shield in global biodefense system to protect the public health and tackle the incoming pandemics. PMID:35093353
Iron dysregulation in COVID-19 and reciprocal evolution of SARS-CoV-2: Natura nihil frustra facit. PMID:34997606
Encephalitis and Death in Wild Mammals at a Rehabilitation Center after Infection with Highly Pathogenic Avian Influenza A(H5N8) Virus, United Kingdom. PMID:34670647
ESC: a comprehensive resource for SARS-CoV-2 immune escape variants. PMID:34643704
Safe-in-Man Broad Spectrum Antiviral Agents. PMID:34258746
A map of the SARS-CoV-2 RNA structurome. PMID:34046592
Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies. PMID:33875001
Ten Years of Collaborative Progress in the Quest for Orthologs. PMID:33822172
Low compositions of human toll-like receptor 7/8-stimulating RNA motifs in the MERS-CoV, SARS-CoV and SARS-CoV-2 genomes imply a substantial ability to evade human innate immunity. PMID:33665043
Differentially conserved amino acid positions may reflect differences in SARS-CoV-2 and SARS-CoV behaviour. PMID:33560365
Uncovering potential host proteins and pathways that may interact with eukaryotic short linear motifs in viral proteins of MERS, SARS and SARS2 coronaviruses that infect humans. PMID:33534852
A parsimonious approach for recognizing SARS-CoV-2 and host interactions. PMID:33506962
Diverse viral proteases activate the NLRP1 inflammasome. PMID:33410748
Next-generation computational tools and resources for coronavirus research: From detection to vaccine discovery. PMID:33301953
DBCOVP: A database of coronavirus virulent glycoproteins. PMID:33276297
Multiple Introductions and Predominance of Rotavirus Group A Genotype G3P[8] in Kilifi, Coastal Kenya, 4 Years after Nationwide Vaccine Introduction. PMID:33255256
Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies. PMID:33173909
Toward Preparing a Knowledge Base to Explore Potential Drugs and Biomedical Entities Related to COVID-19: Automated Computational Approach. PMID:33055059
A database resource and online analysis tools for coronaviruses on a historical and global scale. PMID:33009914
Discoveries of Exoribonuclease-Resistant Structures of Insect-Specific Flaviviruses Isolated in Zambia. PMID:32933075
A Narrative Review of COVID-19: The New Pandemic Disease. PMID:32801413
High-Quality Resolution of the Outbreak-Related Zika Virus Genome and Discovery of New Viruses Using Ion Torrent-Based Metatranscriptomics. PMID:32708079
Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018. PMID:32660437
Positional Correlation Natural Vector: A Novel Method for Genome Comparison. PMID:32485813
In-silico identification of the vaccine candidate epitopes against the Lassa virus hemorrhagic fever. PMID:32376973
Mycobacterium bovis: From Genotyping to Genome Sequencing. PMID:32375210
Epitope based vaccine prediction for SARS-COV-2 by deploying immuno-informatics approach. PMID:32352026
Under-the-Radar Dengue Virus Infections in Natural Populations of Aedes aegypti Mosquitoes. PMID:32350095
DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing. PMID:32134380
Discovery and development of safe-in-man broad-spectrum antiviral agents. PMID:32081774
Natural Vertical Transmission of Zika Virus in Larval Aedes aegypti Populations, Morelos, Mexico. PMID:31310224
Assessing the Potential Interactions between Cellular miRNA and Arboviral Genomic RNA in the Yellow Fever Mosquito, Aedes aegypti. PMID:31185697
Cyberbiosecurity Challenges of Pathogen Genome Databases. PMID:31157218
The Placental Atlas Tool (PAT): A collaborative research and discovery platform for the placental research community. PMID:31103066
Human Monoclonal Antibodies Potently Neutralize Zika Virus and Select for Escape Mutations on the Lateral Ridge of the Envelope Protein. PMID:31043537
Predicting wildlife reservoirs and global vulnerability to zoonotic Flaviviruses. PMID:30575757
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. PMID:30407573
Pretreatment Hepatitis C Virus NS5A/NS5B Resistance-Associated Substitutions in Genotype 1 Uruguayan Infected Patients. PMID:30186532
Overview of Virus Metagenomic Classification Methods and Their Biological Applications. PMID:29740407
Extracting geographic locations from the literature for virus phylogeography using supervised and distant supervision methods. PMID:28815119
High-dimensional CyTOF analysis of dengue virus-infected human DCs reveals distinct viral signatures. PMID:28679950
Immunogenicity of mumps virus vaccine candidates matching circulating genotypes in the United States and China. PMID:28623030
EuPathDB: the eukaryotic pathogen genomics database resource. PMID:27903906
The European Classical Swine Fever Virus Database: Blueprint for a Pathogen-Specific Sequence Database with Integrated Sequence Analysis Tools. PMID:27827988
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. PMID:27799466
DGV: Dengue Genographic Viewer. PMID:27375595
Deciphering the biology of porcine epidemic diarrhea virus in the era of reverse genetics. PMID:27212685
Integrated sequence and immunology filovirus database at Los Alamos. PMID:27103629
Comprehensive Screening for Naturally Occurring Hepatitis C Virus Resistance to Direct-Acting Antivirals in the NS3, NS5A, and NS5B Genes in Worldwide Isolates of Viral Genotypes 1 to 6. PMID:26856832
First complete genome sequence of European turkey coronavirus suggests complex recombination history related with US turkey and guinea fowl coronaviruses. PMID:26585962
Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France. PMID:26506370
Molecular investigation of a full-length genome of a Q1-like IBV strain isolated in Italy in 2013. PMID:26191621
Advanced molecular surveillance of hepatitis C virus. PMID:25781918
Genomic sequences of a low passage herpes simplex virus 2 clinical isolate and its plaque-purified derivative strain. PMID:24503076
Design and experimental approach to the construction of a human signal-molecule-profiling database. PMID:24351788
Feature selection methods for identifying genetic determinants of host species in RNA viruses. PMID:24130470
New strategy for virus discovery: viruses identified in human feces in the last decade. PMID:23917840
http://dx.doi.org/10.1093/nar/GKR859

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gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: ViPR; Virus Pathogen Database and Analysis Resource; DOI: https://doi.org/10.25504/FAIRsharing.2qx8n8; Last edited: March 27, 2020, 11:08 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

sequence feature
metasource: Fairsharing.org
version: FAIRsharing.org: ViPR; Virus Pathogen Database and Analysis Resource; DOI: https://doi.org/10.25504/FAIRsharing.2qx8n8; Last edited: March 27, 2020, 11:08 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

structure
metasource: Fairsharing.org
version: FAIRsharing.org: ViPR; Virus Pathogen Database and Analysis Resource; DOI: https://doi.org/10.25504/FAIRsharing.2qx8n8; Last edited: March 27, 2020, 11:08 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

viral genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

other molecular biology databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

drugs and drug design
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

blast
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

covid-19
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

dengue
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

ebola
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

enterovirus d68
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

hepatitis c
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

genes
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

genomes
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

host factor data
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

immune epitopes
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

influenza
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

phylogenetic tree
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

proteins
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

sequence alignment
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

sequence variation - snp
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

vaccine
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

virus
metasource: re3data.org
version: re3data.org: Virus Pathogen Resource; editing status 2022-05-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P93 last accessed: 2022-11-04

virology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:13.361816

gene expression sequence feature structure genomics viral genome molecular biology drug blast covid-19 dengue ebola enterovirus d68 hepatitis c gene genomes host factor data immune epitopes influenza phylogenetic tree proteins sequence alignment sequence variation - snp vaccine virus virology

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