ProtCID

Names
More detailed information about this field from each metasource.

ProtCID
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.620566

protcid
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.620566

Other names: protcid

Protein Common Interface Database

Webpage:

http://dunbrack2.fccc.edu/protcid

Publications:

Publications
More detailed information about this field from each metasource.

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms
PMID: 21036862
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.620566

http://nar.oxfordjournals.org/content/39/suppl_1/D761
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms PubMed citations: 44.

44 articles citing: The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms

QSalignWeb: A Server to Predict and Analyze Protein Quaternary Structure. PMID:35071324
Phosphorylation of RIAM by src promotes integrin activation by unmasking the PH domain of RIAM. PMID:33275877
ProtCID: a data resource for structural information on protein interactions. PMID:32024829
Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals. PMID:31471543
Methods for Discovering and Targeting Druggable Protein-Protein Interfaces and Their Application to Repurposing. PMID:30547433
Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification. PMID:30497368
Mouse modeling and structural analysis of the p.G307S mutation in human cystathionine β-synthase (CBS) reveal effects on CBS activity but not stability. PMID:30030379
Interplay of self-association and conformational flexibility in regulating protein function. PMID:29735742
Automated evaluation of quaternary structures from protein crystals. PMID:29708963
Plk2 Loss Commonly Occurs in Colorectal Carcinomas but not Adenomas: Relationship to mTOR Signaling. PMID:29448085
PDB-wide identification of biological assemblies from conserved quaternary structure geometry. PMID:29155427
Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology. PMID:28874689
The "Sticky Patch" Model of Crystallization and Modification of Proteins for Enhanced Crystallizability. PMID:28573570
Biological function derived from predicted structures in CASP11. PMID:27181425
Identifying three-dimensional structures of autophosphorylation complexes in crystals of protein kinases. PMID:26628682
Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts. PMID:26508758
The Landscape of Intertwined Associations in Homooligomeric Proteins. PMID:26340815
Structural Perspectives on the Evolutionary Expansion of Unique Protein-Protein Binding Sites. PMID:26213149
A hybrid method for protein-protein interface prediction. PMID:26178156
The origin of CDR H3 structural diversity. PMID:25579815
A PDB-wide, evolution-based assessment of protein-protein interfaces. PMID:25326082
The structure of the C-terminal domain of the Zaire ebolavirus nucleoprotein. PMID:25195755
Coverage of protein domain families with structural protein-protein interactions: current progress and future trends. PMID:24931138
BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers. PMID:24922057
Structural bioinformatics of the interactome. PMID:24895853
Non-redundant unique interface structures as templates for modeling protein interactions. PMID:24475173
Assessment of ligand binding site predictions in CASP10. PMID:24339001
iPfam: a database of protein family and domain interactions found in the Protein Data Bank. PMID:24297255
KBDOCK 2013: a spatial classification of 3D protein domain family interactions. PMID:24271397
Protein modeling: what happened to the "protein structure gap"? PMID:24010712
Structural templates for modeling homodimers. PMID:23996787
Architecture and assembly of HIV integrase multimers in the absence of DNA substrates. PMID:23322775
A new model for allosteric regulation of phenylalanine hydroxylase: implications for disease and therapeutics. PMID:23296088
Protein interface classification by evolutionary analysis. PMID:23259833
Prediction of phenotypes of missense mutations in human proteins from biological assemblies. PMID:22965855
Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB. PMID:22942020
Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins. PMID:22554255
Modulating protein-protein interactions with small molecules: the importance of binding hotspots. PMID:22198293
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins. PMID:22102591
InterEvol database: exploring the structure and evolution of protein complex interfaces. PMID:22053089
Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization. PMID:21572178
A transient homotypic interaction model for the influenza A virus NS1 protein effector domain. PMID:21464929
Modeling single nucleotide polymorphisms in the human AKR1C1 and AKR1C2 genes: implications for functional and genotyping analyses. PMID:21217827
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
http://nar.oxfordjournals.org/content/39/suppl_1/D761

Tags:

Tags
More detailed information about this field from each metasource.

metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein-protein interactions
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein structural motifs and surfaces
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.620566

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.620566

proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.620566

protein folds and structural domains
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.620566

metabolic and signaling pathways protein-protein interactions protein structural motifs and surfaces molecular interactions, pathways and networks proteins protein folds and structural domains

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