PINA 3.0: mining cancer interactome.
PMID:33231689
Identification, Validation, and Functional Annotations of Genome-Wide Profile Variation between Melanocytic Nevus and Malignant Melanoma.
PMID:32934956
Identification and validation of novel metastasis-related signatures of clear cell renal cell carcinoma using gene expression databases.
PMID:32913492
Identifying genetic variants and pathways associated with extreme levels of fetal hemoglobin in sickle cell disease in Tanzania.
PMID:32503527
Comprehensive gene and pathway analysis of cervical cancer progression.
PMID:32256826
Basement membrane ligands initiate distinct signalling networks to direct cell shape.
PMID:32147508
MSP-N: Multiple selection procedure with 'N' possible growth mechanisms.
PMID:31830048
Leveraging User-Friendly Network Approaches to Extract Knowledge From High-Throughput Omics Datasets.
PMID:31798629
Biological Network Approaches and Applications in Rare Disease Studies.
PMID:31614842
Screening and Identification of Potential Prognostic Biomarkers in Adrenocortical Carcinoma.
PMID:31572440
Machine-learning techniques for the prediction of protein-protein interactions.
PMID:31502581
Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.
PMID:31294817
Imbalanced testicular metabolism induced by thyroid disorders: New evidences from quantitative proteome.
PMID:31256343
Cross-species alcohol dependence-associated gene networks: Co-analysis of mouse brain gene expression and human genome-wide association data.
PMID:31017905
Systematic Identification and Evolution Analysis of Sox Genes in Coturnix japonica Based on Comparative Genomics.
PMID:31013663
Assembly of the β4-Integrin Interactome Based on Proximal Biotinylation in the Presence and Absence of Heterodimerization.
PMID:30404858
Short term optical defocus perturbs normal developmental shifts in retina/RPE protein abundance.
PMID:30157773
In silico drug screening by using genome-wide association study data repurposed dabrafenib, an anti-melanoma drug, for Parkinson's disease.
PMID:30137437
Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery.
PMID:30082644
MiRNA-BD: an evidence-based bioinformatics model and software tool for microRNA biomarker discovery.
PMID:30081733
Reciprocal Perspective for Improved Protein-Protein Interaction Prediction.
PMID:30076341
Tumor endothelial marker 8 promotes cancer progression and metastasis.
PMID:30046396
MTGO: PPI Network Analysis Via Topological and Functional Module Identification.
PMID:29615773
Nasopharyngeal Carcinoma Protein Interaction Mapping Analysis via Proteomic Approaches.
PMID:29582644
Comparison of Echinococcus multilocularis and Echinococcus granulosus hydatid fluid proteome provides molecular strategies for specialized host-parasite interactions.
PMID:29228589
Prediction and Validation of Hub Genes Associated with Colorectal Cancer by Integrating PPI Network and Gene Expression Data.
PMID:29209625
SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome.
PMID:29141584
Identification of candidate genes related to pancreatic cancer based on analysis of gene co-expression and protein-protein interaction network.
PMID:29050346
Molecular mechanisms underlying gliomas and glioblastoma pathogenesis revealed by bioinformatics analysis of microarray data.
PMID:28952134
Fasciclin-calcareous corpuscle binary complex mediated protein-protein interactions in Taenia solium metacestode.
PMID:28931431
Network analyses elucidate the role of SMYD3 in esophageal squamous cell carcinoma.
PMID:28781952
The Sharpin interactome reveals a role for Sharpin in lamellipodium formation via the Arp2/3 complex.
PMID:28775156
From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data.
PMID:28477207
Network-assisted analysis of GWAS data identifies a functionally-relevant gene module for childhood-onset asthma.
PMID:28428554
A Genomic and Protein-Protein Interaction Analyses of Nonsyndromic Hearing Impairment in Cameroon Using Targeted Genomic Enrichment and Massively Parallel Sequencing.
PMID:28075205
Network-based analysis of differentially expressed genes in cerebrospinal fluid (CSF) and blood reveals new candidate genes for multiple sclerosis.
PMID:28028462
The integrin adhesome network at a glance.
PMID:27799358
Exploring the interactions of the RAS family in the human protein network and their potential implications in RAS-directed therapies.
PMID:27713118
Network analysis reveals potential markers for pediatric adrenocortical carcinoma.
PMID:27555782
A protein network descriptor server and its use in studying protein, disease, metabolic and drug targeted networks.
PMID:27542402
Reversal of dendritic phenotypes in 16p11.2 microduplication mouse model neurons by pharmacological targeting of a network hub.
PMID:27402753
NEpiC: a network-assisted algorithm for epigenetic studies using mean and variance combined signals.
PMID:27302130
Genetic Relationship between Schizophrenia and Nicotine Dependence.
PMID:27164557
Identification of breast cancer candidate genes using gene co-expression and protein-protein interaction information.
PMID:27150055
Candidate genes and pathogenesis investigation for sepsis-related acute respiratory distress syndrome based on gene expression profile.
PMID:27090785
An Atlas of the Human Kinome Reveals the Mutational Landscape Underlying Dysregulated Phosphorylation Cascades in Cancer.
PMID:26921330
Quantitative succinylome analysis in the liver of non-alcoholic fatty liver disease rat model.
PMID:26843850
Modulation of FAK and Src adhesion signaling occurs independently of adhesion complex composition.
PMID:26833789
Mining for novel candidate clock genes in the circadian regulatory network.
PMID:26576534
ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations.
PMID:26508762
Relevance Rank Platform (RRP) for Functional Filtering of High Content Protein-Protein Interaction Data.
PMID:26499835
Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response.
PMID:26485378
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.
PMID:26309733
A Systematic Analysis of Candidate Genes Associated with Nicotine Addiction.
PMID:26097843
Proteins interaction network and modeling of IGVH mutational status in chronic lymphocytic leukemia.
PMID:26088082
De novo deletions and duplications of 17q25.3 cause susceptibility to cardiovascular malformations.
PMID:26070612
Pathways and networks-based analysis of candidate genes associated with nicotine addiction.
PMID:25965070
Molecular mechanisms in the pathogenesis of sepsis.
PMID:25870671
EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles.
PMID:25805723
Coinheritance of COL4A5 and MYO1E mutations accentuate the severity of kidney disease.
PMID:25739341
cisPath: an R/Bioconductor package for cloud users for visualization and management of functional protein interaction networks.
PMID:25708840
Defining the phospho-adhesome through the phosphoproteomic analysis of integrin signalling.
PMID:25677187
A proteomic approach reveals integrin activation state-dependent control of microtubule cortical targeting.
PMID:25609142
Microtubule-dependent modulation of adhesion complex composition.
PMID:25526367
Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.
PMID:25305756
Identification of possible pathogenic pathways in Behçet's disease using genome-wide association study data from two different populations.
PMID:25227143
Profiling the tyrosine phosphoproteome of different mouse mammary tumour models reveals distinct, model-specific signalling networks and conserved oncogenic pathways.
PMID:25200860
Beyond GWAS in COPD: probing the landscape between gene-set associations, genome-wide associations and protein-protein interaction networks.
PMID:25171373
Transcriptome sequencing and genome-wide association analyses reveal lysosomal function and actin cytoskeleton remodeling in schizophrenia and bipolar disorder.
PMID:25113377
Genome-wide association and network analysis of lung function in the Framingham Heart Study.
PMID:25044411
Network based analyses of gene expression profile of LCN2 overexpression in esophageal squamous cell carcinoma.
PMID:24954627
Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis.
PMID:24809055
Functional genomics evidence unearths new moonlighting roles of outer ring coat nucleoporins.
PMID:24722254
The protein-protein interaction network of eyestalk, Y-organ and hepatopancreas in Chinese mitten crab Eriocheir sinensis.
PMID:24674293
GeneSense: a new approach for human gene annotation integrated with protein-protein interaction networks.
PMID:24667292
Interactome analysis of AMP-activated protein kinase (AMPK)-α1 and -β1 in INS-1 pancreatic beta-cells by affinity purification-mass spectrometry.
PMID:24625528
BambooGDB: a bamboo genome database with functional annotation and an analysis platform.
PMID:24602877
Dynamic protein interaction modules in human hepatocellular carcinoma progression.
PMID:24564909
Protein intrinsic disorder and network connectivity. The case of 14-3-3 proteins.
PMID:24550932
A Network Approach to Wound Healing.
PMID:24527361
Computational developments in microRNA-regulated protein-protein interactions.
PMID:24507415
Review of biological network data and its applications.
PMID:24465231
Interaction proteome of human Hippo signaling: modular control of the co-activator YAP1.
PMID:24366813
IQGAP1 is a key node within the small GTPase network.
PMID:24355937
Integrating GWASs and human protein interaction networks identifies a gene subnetwork underlying alcohol dependence.
PMID:24268660
Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system.
PMID:24162925
Multi-dimensional prioritization of dental caries candidate genes and its enriched dense network modules.
PMID:24146904
Network.assisted analysis to prioritize GWAS results: principles, methods and perspectives.
PMID:24122152
Insulin biosynthetic interaction network component, TMEM24, facilitates insulin reserve pool release.
PMID:24012759
Label-free mass spectrometry proteome quantification of human embryonic kidney cells following 24 hours of sialic acid overproduction.
PMID:23915316
A kernel regression approach to gene-gene interaction detection for case-control studies.
PMID:23868214
Rac1 is deactivated at integrin activation sites through an IQGAP1-filamin-A-RacGAP1 pathway.
PMID:23843620
Drug repositioning: a machine-learning approach through data integration.
PMID:23800010
Interfacing cellular networks of S. cerevisiae and E. coli: connecting dynamic and genetic information.
PMID:23663484
Comparative proteomic analysis of supportive and unsupportive extracellular matrix substrates for human embryonic stem cell maintenance.
PMID:23658023
Extracting coordinated patterns of DNA methylation and gene expression in ovarian cancer.
PMID:23599224
Network pharmacology strategies toward multi-target anticancer therapies: from computational models to experimental design principles.
PMID:23530504
Identification of protein interactions involved in cellular signaling.
PMID:23481661
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.
PMID:23384594
Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions.
PMID:23157382
Searching joint association signals in CATIE schizophrenia genome-wide association studies through a refined integrative network approach.
PMID:23134571
A simple knowledge-based mining method for exploring hidden key molecules in a human biomolecular network.
PMID:22979956
Weighted frequent gene co-expression network mining to identify genes involved in genome stability.
PMID:22956898
Distinct and competitive regulatory patterns of tumor suppressor genes and oncogenes in ovarian cancer.
PMID:22952919
Dissecting the gene network of dietary restriction to identify evolutionarily conserved pathways and new functional genes.
PMID:22912585
DTome: a web-based tool for drug-target interactome construction.
PMID:22901092
Network-assisted Causal Gene Detection in Genome-wide Association Studies: An Improved Module Search Algorithm.
PMID:22898890
Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments.
PMID:22844098
Network-assisted investigation of combined causal signals from genome-wide association studies in schizophrenia.
PMID:22792057
A comprehensive network and pathway analysis of candidate genes in major depressive disorder.
PMID:22784618
NetWalker: a contextual network analysis tool for functional genomics.
PMID:22732065
DroPNet: a web portal for integrated analysis of Drosophila protein-protein interaction networks.
PMID:22641854
An activation force-based affinity measure for analyzing complex networks.
PMID:22355630
GenRev: exploring functional relevance of genes in molecular networks.
PMID:22227021
PINA v2.0: mining interactome modules.
PMID:22067443
Integrative network analysis identifies key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma.
PMID:21824427
Quantitative proteomics reveals the basis for the biochemical specificity of the cell-cycle machinery.
PMID:21816347
GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.
PMID:21777475
Unraveling regulation and new components of human P-bodies through a protein interaction framework and experimental validation.
PMID:21750099
Do cancer proteins really interact strongly in the human protein-protein interaction network?
PMID:21666777
Gene set analysis of genome-wide association studies: methodological issues and perspectives.
PMID:21565265
Data integration workflow for search of disease driving genes and genetic variants.
PMID:21533266
Network analysis of single nucleotide polymorphisms in asthma.
PMID:21437052
Virus interactions with human signal transduction pathways.
PMID:21330695
dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks.
PMID:21045073
Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme.
PMID:20822536
Protein kinase target discovery from genome-wide messenger RNA expression profiling.
PMID:20687179
Protein-protein interactions essentials: key concepts to building and analyzing interactome networks.
PMID:20589078
Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry.
PMID:20445003
MYBBP1A: a new Ipr1's binding protein in mice.
PMID:20221700
Genome-wide association study identifies five susceptibility loci for glioma.
PMID:19578367
DASMIweb: online integration, analysis and assessment of distributed protein interaction data.
PMID:19502495
SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks.
PMID:19454602