FunSimMat

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FunSimMat

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:45.497298

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funsimmat

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:45.497298

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Other names: funsimmat

Gene Ontology-based functional similarity values for proteins and protein families

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Publications

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FunSimMat update: new features for exploring functional similarity
PMID: 19923227

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:45.497298

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• FunSimMat update: new features for exploring functional similarity PubMed citations: 16.

  16 articles citing: FunSimMat update: new features for exploring functional similarity

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  HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey. PMID:34991460

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  Predicting candidate genes from phenotypes, functions and anatomical site of expression. PMID:33051643

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  Semantic similarity and machine learning with ontologies. PMID:33049044

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  Inferring ontology graph structures using OWL reasoning. PMID:29304741

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  InteGO2: a web tool for measuring and visualizing gene semantic similarities using Gene Ontology. PMID:27586009

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  The role of ontologies in biological and biomedical research: a functional perspective. PMID:25863278

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  Abundant genetic overlap between blood lipids and immune-mediated diseases indicates shared molecular genetic mechanisms. PMID:25853426

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  FSim: a novel functional similarity search algorithm and tool for discovering functionally related gene products. PMID:25184141

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  Drug-target interaction prediction by integrating chemical, genomic, functional and pharmacological data. PMID:24297542

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  Profiling of Parkin-binding partners using tandem affinity purification. PMID:24244333

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  Inferring potential microRNA-microRNA associations based on targeting propensity and connectivity in the context of protein interaction network. PMID:23874989

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  Chapter 15: disease gene prioritization. PMID:23633938

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  Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis. PMID:23603763

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  Specificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove. PMID:23047924

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  Mining GO annotations for improving annotation consistency. PMID:22848383

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  Improving disease gene prioritization using the semantic similarity of Gene Ontology terms. PMID:20823322

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genomics databases (non-vertebrate)

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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genome annotation terms, ontologies and nomenclature

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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gene and protein families

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:45.497298

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pathology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:45.497298

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:45.497298

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gene expression

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:45.497298

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:45.497298

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genomics genome annotation terms, ontologies and nomenclature gene and protein families pathology molecular interactions, pathways and networks gene expression proteins