Isobase

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Isobase

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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IsoBase

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:26.830029

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isobase

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:26.830029

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Other names: IsoBase, isobase

IsoRank PPI Network Alignment Based Ortholog Database

Webpage:

Publications:

Publications

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IsoBase: a database of functionally related proteins across PPI networks
PMID: 21177658

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:26.830029

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http://nar.oxfordjournals.org/content/39/suppl_1/D295

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• IsoBase: a database of functionally related proteins across PPI networks PubMed citations: 21.

  21 articles citing: IsoBase: a database of functionally related proteins across PPI networks

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  AligNet: alignment of protein-protein interaction networks. PMID:33203353

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  A review of protein-protein interaction network alignment: From pathway comparison to global alignment. PMID:33033584

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  NAPAbench 2: A network synthesis algorithm for generating realistic protein-protein interaction (PPI) network families. PMID:31986158

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  The Regulation of Cbf1 by PAS Kinase Is a Pivotal Control Point for Lipogenesis vs. Respiration in Saccharomyces cerevisiae. PMID:30381292

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  ATria: a novel centrality algorithm applied to biological networks. PMID:28617231

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  Protein complex prediction for large protein protein interaction networks with the Core&Peel method. PMID:28185552

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  PROPER: global protein interaction network alignment through percolation matching. PMID:27955623

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  Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model. PMID:27766938

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  An Adaptive Hybrid Algorithm for Global Network Alignment. PMID:27295633

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  Inferring Orthologs: Open Questions and Perspectives. PMID:26966373

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  PlantOrDB: a genome-wide ortholog database for land plants and green algae. PMID:26112452

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  Accurate multiple network alignment through context-sensitive random walk. PMID:25707987

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  A comprehensive protein-protein interactome for yeast PAS kinase 1 reveals direct inhibition of respiration through the phosphorylation of Cbf1. PMID:24850888

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  Optimizing a global alignment of protein interaction networks. PMID:24048352

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  SMETANA: accurate and scalable algorithm for probabilistic alignment of large-scale biological networks. PMID:23874484

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  Computational solutions for omics data. PMID:23594911

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  Global network alignment using multiscale spectral signatures. PMID:23047556

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  A network synthesis model for generating protein interaction network families. PMID:22912671

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  Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks. PMID:22808943

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  An integrative approach to ortholog prediction for disease-focused and other functional studies. PMID:21880147

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  Computational methods for Gene Orthology inference. PMID:21690100
• http://nar.oxfordjournals.org/content/39/suppl_1/D295

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metabolic and signaling pathways

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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protein-protein interactions

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:26.830029

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protein interactions

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:26.830029

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:26.830029

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:26.830029

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metabolic and signaling pathways protein-protein interactions model organisms protein interaction molecular interactions, pathways and networks proteins