Origin of Increased Solvent Accessibility of Peptide Bonds in Mutual Synergetic Folding Proteins.
PMID:34948202
Random sampling of the Protein Data Bank: RaSPDB.
PMID:34921198
The importance of residue-level filtering and the Top2018 best-parts dataset of high-quality protein residues.
PMID:34779043
Accurate Representation of Protein-Ligand Structural Diversity in the Protein Data Bank (PDB).
PMID:32213914
Analysis of Heterodimeric "Mutual Synergistic Folding"-Complexes.
PMID:31623284
Evolutionary drivers of protein shape.
PMID:31417097
Physical Background of the Disordered Nature of "Mutual Synergetic Folding" Proteins.
PMID:30373142
AlloMAPS: allosteric mutation analysis and polymorphism of signaling database.
PMID:30365033
SAFlex: A structural alphabet extension to integrate protein structural flexibility and missing data information.
PMID:29975698
Ordering Protein Contact Matrices.
PMID:29632657
Combining Graphical and Analytical Methods with Molecular Simulations To Analyze Time-Resolved FRET Measurements of Labeled Macromolecules Accurately.
PMID:28709377
Analyses of the Sequence and Structural Properties Corresponding to Pentapeptide and Large Palindromes in Proteins.
PMID:26465610
A conserved charged single α-helix with a putative steric role in paraspeckle formation.
PMID:26428695
Conformational Entropy of Intrinsically Disordered Proteins from Amino Acid Triads.
PMID:26138206
The human transmembrane proteome.
PMID:26018427
The hydrophobic temperature dependence of amino acids directly calculated from protein structures.
PMID:26000449
Building a better fragment library for de novo protein structure prediction.
PMID:25901595
Intrinsic disorder and metal binding in UreG proteins from Archae hyperthermophiles: GTPase enzymes involved in the activation of Ni(II) dependent urease.
PMID:25846143
StaRProtein, a web server for prediction of the stability of repeat proteins.
PMID:25807112
Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.
PMID:25664638
MUFOLD-DB: a processed protein structure database for protein structure prediction and analysis.
PMID:25559128
Can natural proteins designed with 'inverted' peptide sequences adopt native-like protein folds?
PMID:25210740
Reconstructing protein structures by neural network pairwise interaction fields and iterative decoy set construction.
PMID:24970210
Strength of a bifurcated H bond.
PMID:24591597
The impact of structural diversity and parameterization on maps of the protein universe.
PMID:24565442
Automatic classification of protein structures using low-dimensional structure space mappings.
PMID:24564500
Joint probabilistic-logical refinement of multiple protein feature predictors.
PMID:24428894
Lysine carboxylation: unveiling a spontaneous post-translational modification.
PMID:24419378
Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.
PMID:24410833
Green-lighting green fluorescent protein: faster and more efficient folding by eliminating a cis-trans peptide isomerization event.
PMID:24408076
Mutational effects on stability are largely conserved during protein evolution.
PMID:24324165
Confidence-guided local structure prediction with HHfrag.
PMID:24146881
Statistical analysis of sizes and shapes of virus capsids and their resulting elastic properties.
PMID:23860870
The Role of Aromatic-Aromatic Interactions in Strand-Strand Stabilization of β-Sheets.
PMID:23810905
CNNcon: improved protein contact maps prediction using cascaded neural networks.
PMID:23626696
Computational and statistical analyses of amino acid usage and physico-chemical properties of the twelve late embryogenesis abundant protein classes.
PMID:22615859
A comparative study of the second-order hydrophobic moments for globular proteins: the consensus scale of hydrophobicity and the CHARMM partial atomic charges.
PMID:22272083
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment.
PMID:22198341
ccPDB: compilation and creation of data sets from Protein Data Bank.
PMID:22139939
A series of PDB related databases for everyday needs.
PMID:21071423
Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins.
PMID:20606264
ProteinDBS v2.0: a web server for global and local protein structure search.
PMID:20538653
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources.
PMID:19965766