SPRITE
SPRITE is a protein structural motif database searching program. Users can upload a PDB file of a query protein structure, and SPRITE compares the input coordinates to a database of 3D side chain arrangements of sites and motifs using a graph theoretical approach.
Description
More detailed information about this field from each metasource.
SPRITE is a protein structural motif database searching program. Users can upload a PDB file of a query protein structure, and SPRITE compares the input coordinates to a database of 3D side chain arrangements of sites and motifs using a graph theoretical approach.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:24.015480
Webpage:
http://mfrlab.org/grafss/spriteWebpage
More detailed information about this field from each metasource.
http://mfrlab.org/grafss/sprite
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:24.015480
Publications:
Publications
More detailed information about this field from each metasource.
SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures
PMID: 22573174
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:24.015480
Publications
More detailed information about this field from each metasource.
SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures
PMID: 22573174
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:24.015480
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SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures
PubMed citations: 18.
18 articles citing: SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures
Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures. PMID:34445259
LigAdvisor: a versatile and user-friendly web-platform for drug design. PMID:34023895
The structure of a major surface antigen SAG19 from Eimeria tenella unifies the Eimeria SAG family. PMID:33742128
Bioinformatic analysis of subfamily-specific regions in 3D-structures of homologs to study functional diversity and conformational plasticity in protein superfamilies. PMID:33738079
Torpedo californica acetylcholinesterase is stabilized by binding of a divalent metal ion to a novel and versatile 4D motif. PMID:33686648
Development of a TSR-Based Method for Protein 3-D Structural Comparison With Its Applications to Protein Classification and Motif Discovery. PMID:33520934
Real-time structural motif searching in proteins using an inverted index strategy. PMID:33284792
Side chain similarity comparisons for integrated drug repositioning and potential toxicity assessments in epidemic response scenarios: The case for COVID-19. PMID:33101604
3D-PP: A Tool for Discovering Conserved Three-Dimensional Protein Patterns. PMID:31261733
Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning. PMID:31106379
Biophysical characterisation of the novel zinc binding property in Suppressor of Fused. PMID:28894158
GASS-WEB: a web server for identifying enzyme active sites based on genetic algorithms. PMID:28459991
Rational Structure-Based Rescaffolding Approach to De Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics. PMID:27123592
Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach. PMID:27092185
BCSearch: fast structural fragment mining over large collections of protein structures. PMID:25977292
Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of glycoside hydrolase. PMID:24938123
IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank. PMID:23716645
Proteins of unknown function in the Protein Data Bank (PDB): an inventory of true uncharacterized proteins and computational tools for their analysis. PMID:23202924
Tags:
Tags
More detailed information about this field from each metasource.
protein structural motifs and surfaces
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:24.015480
protein folds and structural domains
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:24.015480
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:24.015480
structure prediction
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:24.015480
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:24.015480
Tags
More detailed information about this field from each metasource.
protein structural motifs and surfaces
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:24.015480
protein folds and structural domains
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:24.015480
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:24.015480
structure prediction
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:24.015480
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:24.015480
protein structural motifs and surfaces protein folds and structural domains small molecule structure prediction proteins
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