UniCarbKB
Names
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UniCarbKB
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
unicarbkb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
Names
More detailed information about this field from each metasource.
UniCarbKB
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
unicarbkb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:13.707124
Names
More detailed information about this field from each metasource.
UniCarbKB
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
unicarbkb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:13.707124
UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by querying interfaces, annotation technologies and the adoption of common standards to integrate structural, experimental and functional data.
Description
More detailed information about this field from each metasource.
UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The knowledgebase will offer a freely accessible and information-rich resource supported by querying interfaces, annotation technologies and the adoption of common standards to integrate structural, experimental and functional data.
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
GlycoSuiteDB release 5, January 2003, contains more than 7800 annotated entries of glycan structures derived from glycoproteins, or free oligosaccharides isolated from biologically important fluids such as milk, saliva and urine. For each structure information is available concerning the glycan type, linkage and anomeric configuration, mass and composition. Detailed information is provided on native and recombinant sources, including species, tissue and/or cell type, cell line, strain, blood group and disease state. There are over 1000 different biological sources represented in GlycoSuiteDB, from over 200 different tissue or cell types. Where known, the proteins to which the glycan structures are attached are described, and cross- references to SWISS-PROT are given if applicable. The database annotations include literature references which are linked to PubMed. Detailed information on the methods used to determine each glycan structure are provided to help the user assess the quality of the structural assignment. The web site (http://www.glycosuite.com) allows the user to search the database using a combination of 2-D glycan structure, composition, glycan linkage type, reducing-terminal sugar residue, glycan mass (monoisotopic or average), species, biological system, tissue or cell type, disease state, protein name, SWISS-PROT/TrEMBL accession number, or reference information. Results can be sorted by glycan mass, protein name, tissue or cell type, disease state or taxonomy. The emphasis of this database is to be consistent. This will enable reliable mining of the information for future applications of glycobiology.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Curated and annotated glycan database which curates information from the scientific literature on glycoprotein derived glycan structures.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:13.707124
Webpage:
http://www.unicarbkb.orgWebpage
More detailed information about this field from each metasource.
http://www.unicarbkb.org
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://www.unicarbkb.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://unicarb-db.expasy.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:13.707124
Licence:
Name: Creative Commons Attribution-NonCommercial-NoDerivs 3.0 United States (CC BY-NC-ND 3.0 US)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NonCommercial-NoDerivs 3.0 United States (CC BY-NC-ND 3.0 US)
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
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https://creativecommons.org/licenses/by-nc-nd/3.0/us/
metasource: Fairsharing.orgversion: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
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UniCarbKB: building a knowledge platform for glycoproteomics
PMID: 24234447
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
http://dx.doi.org/10.1093/nar/gkt1128
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
UniCarbKB: building a knowledge platform for glycoproteomics
PMID: 24234447
metasource: Fairsharing.org
version: FAIRsharing.org: UniCarbKB; UniCarbKB; DOI: https://doi.org/10.25504/FAIRsharing.emcjf0; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
http://dx.doi.org/10.1093/nar/gkt1128
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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UniCarbKB: building a knowledge platform for glycoproteomics
PubMed citations: 64.
64 articles citing: UniCarbKB: building a knowledge platform for glycoproteomics
Computational Prediction of N- and O-Linked Glycosylation Sites for Human and Mouse Proteins. PMID:35696081
Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans. PMID:35354826
The glycosylation in SARS-CoV-2 and its receptor ACE2. PMID:34782609
Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins. PMID:34611862
Recent advances in mass spectrometry analysis of neuropeptides. PMID:34558119
Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis. PMID:34404781
Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen. PMID:34314492
OGP: A Repository of Experimentally Characterized O-glycoproteins to Facilitate Studies on O-glycosylation. PMID:33581334
O-GlcNAcAtlas: A database of experimentally identified O-GlcNAc sites and proteins. PMID:33442735
Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication. PMID:33349503
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy. PMID:33302373
Altered N-linked glycosylation in endometrial cancer. PMID:33222001
A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR). PMID:33178355
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer. PMID:33093930
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
Golgi compartments enable controlled biomolecular assembly using promiscuous enzymes. PMID:32597757
GlyGen data model and processing workflow. PMID:32324859
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Reference glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes reveal cell-type and culture stage-specific glycan phenotypes. PMID:31972267
Mapping human N-linked glycoproteins and glycosylation sites using mass spectrometry. PMID:31831916
Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles. PMID:31824707
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
glypy: An Open Source Glycoinformatics Library. PMID:31310539
Molecular modeling of the effects of glycosylation on the structure and dynamics of human interferon-gamma. PMID:31025190
Unique Binding Specificities of Proteins toward Isomeric Asparagine-Linked Glycans. PMID:30745240
Clinically Relevant Post-Translational Modification Analyses-Maturing Workflows and Bioinformatics Tools. PMID:30577541
GlycanFormatConverter: a conversion tool for translating the complexities of glycans. PMID:30535258
Distinct urinary glycoprotein signatures in prostate cancer patients. PMID:30237853
Meeting Report of the International Life Science Integration Workshop 2018. PMID:29982395
Application of network smoothing to glycan LC-MS profiling. PMID:29790907
iPTMnet: an integrated resource for protein post-translational modification network discovery. PMID:29145615
Tissue glycomics distinguish tumour sites in women with advanced serous adenocarcinoma. PMID:28853212
Altered (neo-) lacto series glycolipid biosynthesis impairs α2-6 sialylation on N-glycoproteins in ovarian cancer cells. PMID:28358117
Glycoblocks: a schematic three-dimensional representation for glycans and their interactions. PMID:28177314
Strategies for carbohydrate model building, refinement and validation. PMID:28177313
Protein Bioinformatics Databases and Resources. PMID:28150231
Chemical Glycoproteomics. PMID:27960262
Multi-level regulation of cellular glycosylation: from genes to transcript to enzyme to structure. PMID:27744149
Lectin-Glycan Interaction Network-Based Identification of Host Receptors of Microbial Pathogenic Adhesins. PMID:27406561
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. PMID:27296299
Site-specific characterization of N-linked glycosylation in human urinary glycoproteins and endogenous glycopeptides. PMID:27234710
Maturing Glycoproteomics Technologies Provide Unique Structural Insights into the N-glycoproteome and Its Regulation in Health and Disease. PMID:26929216
Computational approaches to define a human milk metaglycome. PMID:26803164
Mass Spectrometry-Based N-Glycomics of Colorectal Cancer. PMID:26690136
Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search. PMID:26656740
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. PMID:26615188
A review of methods for interpretation of glycopeptide tandem mass spectral data. PMID:26612686
SugarBindDB, a resource of glycan-mediated host-pathogen interactions. PMID:26578555
GlyTouCan 1.0--The international glycan structure repository. PMID:26476458
GlycoMob: an ion mobility-mass spectrometry collision cross section database for glycomics. PMID:26314736
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts. PMID:26286194
Carbohydrates in Cyberspace. PMID:26113848
Protein structure and evolution: are they constrained globally by a principle derived from information theory? PMID:25970335
GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides. PMID:25945896
PEIMAN 1.0: Post-translational modification Enrichment, Integration and Matching ANalysis. PMID:25911152
Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data. PMID:25871730
ProSight Lite: graphical software to analyze top-down mass spectrometry data. PMID:25828799
High-Throughput Analysis and Automation for Glycomics Studies. PMID:25814696
Comparative glycoprofiling of HIV gp120 immunogens by capillary electrophoresis and MALDI mass spectrometry. PMID:25809283
GlycoRDF: an ontology to standardize glycomics data in RDF. PMID:25388145
Recent advances in employing molecular modelling to determine the specificity of glycan-binding proteins. PMID:25108191
GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination. PMID:25015990
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. PMID:24792157 - http://dx.doi.org/10.1093/nar/gkt1128
Tags:
Tags
More detailed information about this field from each metasource.
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
carbohydrates
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
structural genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
protein modifications
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
Tags
More detailed information about this field from each metasource.
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
carbohydrates
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:13.707124
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:13.707124
structural genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:13.707124
protein modifications
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:13.707124
structure carbohydrates proteins structural genomics protein modifications
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