Protein Data Bank in Europe
Names
More detailed information about this field from each metasource.
Protein Data Bank in Europe
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
PDBe
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
pdbe
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
Names
More detailed information about this field from each metasource.
Protein Data Bank in Europe
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
PDBe
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
pdbe
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:54.111370
Names
More detailed information about this field from each metasource.
Protein Data Bank in Europe
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
PDBe
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
pdbe
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:54.111370
The Protein Data Bank in Europe (PDBe) is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. It is a founding member of the worldwide Protein Data Bank which collects, organises and disseminates data on biological macromolecular structures.
Description
More detailed information about this field from each metasource.
The Protein Data Bank in Europe (PDBe) is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. It is a founding member of the worldwide Protein Data Bank which collects, organises and disseminates data on biological macromolecular structures.
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Protein Data Bank in Europe
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
PDBe is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - we work to collate, maintain and provide access to the global repository of macromolecular structure data. We develop tools, services and resources to make structure-related data more accessible to the biomedical community.
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
The Protein Data Bank in Europe is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. The database infrastructure is based on the remediated PDB archive data and a specially designed database for storing information on interactions between proteins and bound molecules.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:54.111370
Webpage:
http://www.pdbe.orgWebpage
More detailed information about this field from each metasource.
http://www.pdbe.org
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://www.ebi.ac.uk/pdbe/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
https://www.ebi.ac.uk/pdbe/
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Public Domain
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
https://www.wwpdb.org/about/agreement
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
Publications:
(7)
Publications
More detailed information about this field from each metasource.
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB
PMID: 26476444
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
PDBe: Protein Data Bank in Europe
PMID: 19858099
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
PDBe: Protein Data Bank in Europe
PMID: 22110033
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
PMID: 29126160
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
PDBe: improved findability of macromolecular structure data in the PDB
PMID: 31691821
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
The archiving and dissemination of biological structure data
PMID: 27450113
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
https://doi.org/10.1093/nar/gkz990
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB
PMID: 26476444
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
PDBe: Protein Data Bank in Europe
PMID: 19858099
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
PDBe: Protein Data Bank in Europe
PMID: 22110033
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
PMID: 29126160
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
PDBe: improved findability of macromolecular structure data in the PDB
PMID: 31691821
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
The archiving and dissemination of biological structure data
PMID: 27450113
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
https://doi.org/10.1093/nar/gkz990
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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PDBe: improved accessibility of macromolecular structure data from PDB and EMDB
PubMed citations: 70.
70 articles citing: PDBe: improved accessibility of macromolecular structure data from PDB and EMDB
High-resolution structure determination using high-throughput electron cryo-tomography. PMID:35775981
Sequence-assignment validation in cryo-EM models with checkMySequence. PMID:35775980
A CNN model for predicting binding affinity changes between SARS-CoV-2 spike RBD variants and ACE2 homologues. PMID:35350198
findMySequence: a neural-network-based approach for identification of unknown proteins in X-ray crystallography and cryo-EM. PMID:35059213
Worldwide Protein Data Bank (wwPDB): A virtual treasure for research in biotechnology. PMID:34908533
Daily rhythms in gene expression of the human parasite Schistosoma mansoni. PMID:34852797
The structure of neurofibromin isoform 2 reveals different functional states. PMID:34707296
Chromosome-scale assembly and whole-genome sequencing of 266 giant panda roundworms provide insights into their evolution, adaptation and potential drug targets. PMID:34549895
Interpreting a black box predictor to gain insights into early folding mechanisms. PMID:34527196
PDBeCIF: an open-source mmCIF/CIF parsing and processing package. PMID:34301175
Evolution of kinase polypharmacology across HSP90 drug discovery. PMID:34077750
ProteoVision: web server for advanced visualization of ribosomal proteins. PMID:33999189
Critical assessment of protein intrinsic disorder prediction. PMID:33875885
Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification. PMID:33780441
CDAE: A Cascade of Denoising Autoencoders for Noise Reduction in the Clustering of Single-Particle Cryo-EM Images. PMID:33552141
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis. PMID:33245775
A knowledge-based scoring function to assess quaternary associations of proteins. PMID:32246820
Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases. PMID:32206212
The kinase polypharmacology landscape of clinical PARP inhibitors. PMID:32066817
The current understanding of KRAS protein structure and dynamics. PMID:31988705
PDBe: improved findability of macromolecular structure data in the PDB. PMID:31691821
Evaluation of template-based modeling in CASP13. PMID:31407380
Geometric description of self-interaction potential in symmetric protein complexes. PMID:31101822
New Variant of MELAS Syndrome With Executive Dysfunction, Heteroplasmic Point Mutation in the MT-ND4 Gene (m.12015T>C; p.Leu419Pro) and Comorbid Polyglandular Autoimmune Syndrome Type 2. PMID:30949164
Anticipating innovations in structural biology. PMID:30912485
Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach. PMID:30532050
A comparative analysis of KMT2D missense variants in Kabuki syndrome, cancers and the general population. PMID:30459467
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins. PMID:30445541
Nucleobase carbonyl groups are poor Mg2+ inner-sphere binders but excellent monovalent ion binders-a critical PDB survey. PMID:30409785
Comparative genomics of the major parasitic worms. PMID:30397333
Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents. PMID:30346968
Analysis of impact metrics for the Protein Data Bank. PMID:30325351
De novo main-chain modeling with MAINMAST in 2015/2016 EM Model Challenge. PMID:30075190
SWISS-MODEL: homology modelling of protein structures and complexes. PMID:29788355
De novo main-chain modeling for EM maps using MAINMAST. PMID:29691408
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. PMID:29688351
Worldwide Protein Data Bank validation information: usage and trends. PMID:29533231
Visualization and analysis of non-covalent contacts using the Protein Contacts Atlas. PMID:29335563
LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data. PMID:29190272
Validation of Structures in the Protein Data Bank. PMID:29174494
PDB-wide identification of biological assemblies from conserved quaternary structure geometry. PMID:29155427
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database. PMID:29145643
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. PMID:29126160
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. PMID:29106569
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. PMID:29067736
AmyPro: a database of proteins with validated amyloidogenic regions. PMID:29040693
ChannelsDB: database of biomacromolecular tunnels and pores. PMID:29036719
PDBsum: Structural summaries of PDB entries. PMID:28875543
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj). PMID:28815765
MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures. PMID:28574982
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. PMID:28573592
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. PMID:28365736
Twilight reloaded: the peptide experience. PMID:28291756
Variability of Protein Structure Models from Electron Microscopy. PMID:28262392
OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. PMID:28190782
Validation and extraction of molecular-geometry information from small-molecule databases. PMID:28177306
An update on the Enzyme Portal: an integrative approach for exploring enzyme knowledge. PMID:28158609
Protein Bioinformatics Databases and Resources. PMID:28150231
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures. PMID:27899671
InterPro in 2017-beyond protein family and domain annotations. PMID:27899635
RNAcentral: a comprehensive database of non-coding RNA sequences. PMID:27794554
The RCSB protein data bank: integrative view of protein, gene and 3D structural information. PMID:27794042
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures. PMID:27789697
The archiving and dissemination of biological structure data. PMID:27450113
DCC: a Swiss army knife for structure factor analysis and validation. PMID:27275151
Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance. PMID:27005572
Web-based volume slicer for 3D electron-microscopy data from EMDB. PMID:26876163
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. PMID:26740669
The European Bioinformatics Institute in 2016: Data growth and integration. PMID:26673705 -
PDBe: Protein Data Bank in Europe
PubMed citations: 56.
56 articles citing: PDBe: Protein Data Bank in Europe
Structural Prediction of Peptide-MHC Binding Modes. PMID:35298818
Conformational Variation in Enzyme Catalysis: A Structural Study on Catalytic Residues. PMID:35240125
Current status of PTMs structural databases: applications, limitations and prospects. PMID:35020020
Production of Cross-Linked Lipase Crystals at a Preparative Scale. PMID:34602865
Heat Shock Proteins as Targets for Novel Antimalarial Drug Discovery. PMID:34569027
RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive. PMID:33186584
Ascertaining the biochemical function of an essential pectin methylesterase in the gut microbe Bacteroides thetaiotaomicron. PMID:33097594
Modeling Structural Constraints on Protein Evolution via Side-Chain Conformational States. PMID:31114882
How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals. PMID:30595456
Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars. PMID:30439935
Structure and reactivity of a siderophore-interacting protein from the marine bacterium Shewanella reveals unanticipated functional versatility. PMID:30420426
A model for hydrophobic protrusions on peripheral membrane proteins. PMID:30048443
A distance geometry-based description and validation of protein main-chain conformation. PMID:28989721
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. PMID:28573592
Engineering protein stability with atomic precision in a monomeric miniprotein. PMID:28530710
Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response. PMID:28335725
Estimation of the protein-ligand interaction energy for model building and validation. PMID:28291754
Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas. PMID:27614233
The histone chaperone Vps75 forms multiple oligomeric assemblies capable of mediating exchange between histone H3-H4 tetramers and Asf1-H3-H4 complexes. PMID:27036862
Insights into the biosynthesis and assembly of cryptophycean phycobiliproteins. PMID:25096577
Structural and biochemical analyses of alanine racemase from the multidrug-resistant Clostridium difficile strain 630. PMID:25004969
Evolution of a transition state: role of Lys100 in the active site of isocitrate dehydrogenase. PMID:24797066
PDBe: Protein Data Bank in Europe. PMID:24288376
Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB. PMID:24113529
A domain-centric solution to functional genomics via dcGO Predictor. PMID:23514627
The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics. PMID:23514033
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource. PMID:23203869
Induced fit and the catalytic mechanism of isocitrate dehydrogenase. PMID:22891681
ACPYPE - AnteChamber PYthon Parser interfacE. PMID:22824207
Public domain databases for medicinal chemistry. PMID:22731701
Detection and analysis of unusual features in the structural model and structure-factor data of a birch pollen allergen. PMID:22505400
Implementing an X-ray validation pipeline for the Protein Data Bank. PMID:22505268
PDBe: Protein Data Bank in Europe. PMID:22110033
3DSwap: curated knowledgebase of proteins involved in 3D domain swapping. PMID:21959866
OPM database and PPM web server: resources for positioning of proteins in membranes. PMID:21890895
Graphical representation and mathematical characterization of protein sequences and applications to viral proteins. PMID:21570664
The Protein Data Bank in Europe (PDBe): bringing structure to biology. PMID:21460450
UniProt Knowledgebase: a hub of integrated protein data. PMID:21447597
Protein structure reports in JIMD--an important enhancement of journal scope. PMID:21369958
1,000 structures and more from the MCSG. PMID:21219649
EUROCarbDB: An open-access platform for glycoinformatics. PMID:21106561
Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins. PMID:21087995
PCDDB: the Protein Circular Dichroism Data Bank, a repository for circular dichroism spectral and metadata. PMID:21071417
BRENDA, the enzyme information system in 2011. PMID:21062828
SUPERFAMILY 1.75 including a domain-centric gene ontology method. PMID:21062816
Phospho.ELM: a database of phosphorylation sites--update 2011. PMID:21062810
Ongoing and future developments at the Universal Protein Resource. PMID:21051339
PDBe: Protein Data Bank in Europe. PMID:21045060
The RCSB Protein Data Bank: redesigned web site and web services. PMID:21036868
Crystal structure of Leishmania major oligopeptidase B gives insight into the enzymatic properties of a trypanosomatid virulence factor. PMID:20926390
Collaboration, competition, validation and plans for the future : an interview with Gerard Kleywegt, Head of the Protein Data Bank in Europe. Interviewed by Wendy A Warr. PMID:20922558
Straightforward and complete deposition of NMR data to the PDBe. PMID:20680401
Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research. PMID:20615486
Diversity of structure and function of response regulator output domains. PMID:20226724
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. PMID:19965766
The European Bioinformatics Institute's data resources. PMID:19934258 -
PDBe: Protein Data Bank in Europe
PubMed citations: 49.
49 articles citing: PDBe: Protein Data Bank in Europe
Structural Prediction of Peptide-MHC Binding Modes. PMID:35298818
scEnhancer: a single-cell enhancer resource with annotation across hundreds of tissue/cell types in three species. PMID:34761274
Structural analysis of viral ExoN domains reveals polyphyletic hijacking events. PMID:33730017
EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species. PMID:31740966
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. PMID:29126160
Target-similarity search using Plasmodium falciparum proteome identifies approved drugs with anti-malarial activity and their possible targets. PMID:29088219
MANORAA (Mapping Analogous Nuclei Onto Residue And Affinity) for identifying protein-ligand fragment interaction, pathways and SNPs. PMID:27131358
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB. PMID:26476444
DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder. PMID:25968230
The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology. PMID:25942442
Proteome scale comparative modeling for conserved drug and vaccine targets identification in Corynebacterium pseudotuberculosis. PMID:25573232
A 3D cellular context for the macromolecular world. PMID:25289590
BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data. PMID:25089180
Getting to the edge: protein dynamical networks as a new frontier in plant-microbe interactions. PMID:25071795
Structures and binding specificity of galactose- and mannose-binding lectins from champedak: differences from jackfruit lectins. PMID:24915077
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes. PMID:24319146
Chemical annotation of small and peptide-like molecules at the Protein Data Bank. PMID:24291661
PDBe: Protein Data Bank in Europe. PMID:24288376
Pfam: the protein families database. PMID:24288371
The European Bioinformatics Institute's data resources 2014. PMID:24271396
FireDB: a compendium of biological and pharmacologically relevant ligands. PMID:24243844
Structural and enzymatic characterization of the phosphotriesterase OPHC2 from Pseudomonas pseudoalcaligenes. PMID:24223749
EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases. PMID:24214991
MP:PD--a data base of internal packing densities, internal packing defects and internal waters of helical membrane proteins. PMID:24194596
An estimated 5% of new protein structures solved today represent a new Pfam family. PMID:24189229
Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases. PMID:24150936
Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB. PMID:24113529
How community has shaped the Protein Data Bank. PMID:24010707
Towards a better understanding of the novel avian-origin H7N9 influenza A virus in China. PMID:23897131
An overview of tools for the validation of protein NMR structures. PMID:23877928
The role of structural bioinformatics resources in the era of integrative structural biology. PMID:23633580
Substrate specificity and the effect of calcium on Trypanosoma brucei metacaspase 2. PMID:23506317
Trendspotting in the Protein Data Bank. PMID:23337870
UniChem: a unified chemical structure cross-referencing and identifier tracking system. PMID:23317286
Mapping small molecule binding data to structural domains. PMID:23282026
Data management challenges in three-dimensional EM. PMID:23211764
Ensembl 2013. PMID:23203987
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource. PMID:23203869
The RCSB Protein Data Bank: new resources for research and education. PMID:23193259
Vivaldi: visualization and validation of biomacromolecular NMR structures from the PDB. PMID:23180575
The EBI enzyme portal. PMID:23175605
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation. PMID:23172288
The future of the Protein Data Bank. PMID:23023942
Creating a community resource for protein science. PMID:22969036
Two crystal forms of a helix-rich fatty acid- and retinol-binding protein, Na-FAR-1, from the parasitic nematode Necator americanus. PMID:22750878
Public domain databases for medicinal chemistry. PMID:22731701
The structure of an orthorhombic crystal form of a 'forced reduced' thiol peroxidase reveals lattice formation aided by the presence of the affinity tag. PMID:22691780
Implementing an X-ray validation pipeline for the Protein Data Bank. PMID:22505268
The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:22144685 -
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
PubMed citations: 46.
46 articles citing: PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
Contiguously hydrophobic sequences are functionally significant throughout the human exome. PMID:35294280
Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies. PMID:35293269
Simplified quality assessment for small-molecule ligands in the Protein Data Bank. PMID:35026162
Worldwide Protein Data Bank (wwPDB): A virtual treasure for research in biotechnology. PMID:34908533
Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins. PMID:34611862
New restraints and validation approaches for nucleic acid structures in PDB-REDO. PMID:34473084
ProteinTools: a toolkit to analyze protein structures. PMID:34019657
ProteoVision: web server for advanced visualization of ribosomal proteins. PMID:33999189
Modernized uniform representation of carbohydrate molecules in the Protein Data Bank. PMID:33978738
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. PMID:33956157
Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB. PMID:33445429
The iPPI-DB initiative: A Community-centered database of Protein-Protein Interaction modulators. PMID:33416858
GAG-DB, the New Interface of the Three-Dimensional Landscape of Glycosaminoglycans. PMID:33322545
MobiDB: intrinsically disordered proteins in 2021. PMID:33237329
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. PMID:33211854
Europe PMC in 2020. PMID:33180112
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community). PMID:32566135
Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals. PMID:32123117
Impact of the Protein Data Bank on antineoplastic approvals. PMID:32068073
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. PMID:31950984
An intrinsically disordered proteins community for ELIXIR. PMID:31824649
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. PMID:31733063
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. PMID:31701143
PDBe: improved findability of macromolecular structure data in the PDB. PMID:31691821
ELM-the eukaryotic linear motif resource in 2020. PMID:31680160
PhaSePro: the database of proteins driving liquid-liquid phase separation. PMID:31612960
PDBe-KB: a community-driven resource for structural and functional annotations. PMID:31584092
RCSB Protein Data Bank: Enabling biomedical research and drug discovery. PMID:31531901
Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated? PMID:30995449
Finding enzyme cofactors in Protein Data Bank. PMID:30759194
The European Bioinformatics Institute in 2018: tools, infrastructure and training. PMID:30445657
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins. PMID:30445541
Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars. PMID:30439935
InterPro in 2019: improving coverage, classification and access to protein sequence annotations. PMID:30398656
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. PMID:30357411
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes. PMID:30357405
Protein Data Bank: the single global archive for 3D macromolecular structure data. PMID:30357364
Analysis of impact metrics for the Protein Data Bank. PMID:30325351
UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. PMID:30239928
3DPatch: fast 3D structure visualization with residue conservation. PMID:29931189
Structural biology data archiving - where we are and what lies ahead. PMID:29749603
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update). PMID:29718451
Worldwide Protein Data Bank validation information: usage and trends. PMID:29533231
Validation of ligands in macromolecular structures determined by X-ray crystallography. PMID:29533230
The 2018 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:29316735
The European Bioinformatics Institute in 2017: data coordination and integration. PMID:29186510 -
PDBe: improved findability of macromolecular structure data in the PDB
PubMed citations: 46.
46 articles citing: PDBe: improved findability of macromolecular structure data in the PDB
Three-dimensional Structure Databases of Biological Macromolecules. PMID:35507259
3DLigandSite: structure-based prediction of protein-ligand binding sites. PMID:35412635
Structural Prediction of Peptide-MHC Binding Modes. PMID:35298818
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. PMID:35290070
DBHR: a collection of databases relevant to human research. PMID:35251694
QSalignWeb: A Server to Predict and Analyze Protein Quaternary Structure. PMID:35071324
Worldwide Protein Data Bank (wwPDB): A virtual treasure for research in biotechnology. PMID:34908533
Fifty years of Protein Data Bank in the Journal of Biochemistry. PMID:34865074
Annotating and prioritizing genomic variants using the Ensembl Variant Effect Predictor-A tutorial. PMID:34816521
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. PMID:34791371
An online GPCR structure analysis platform. PMID:34759374
PDBe-KB: collaboratively defining the biological context of structural data. PMID:34755867
RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens. PMID:34739839
The Eukaryotic Linear Motif resource: 2022 release. PMID:34718738
PDB-101: Educational resources supporting molecular explorations through biology and medicine. PMID:34601771
CovPDB: a high-resolution coverage of the covalent protein-ligand interactome. PMID:34581813
The G protein database, GproteinDb. PMID:34570219
PDB-wide identification of physiological hetero-oligomeric assemblies based on conserved quaternary structure geometry. PMID:34520740
In vitro and in silico approach for characterization of antimicrobial peptides from potential probiotic cultures against Staphylococcus aureus and Escherichia coli. PMID:34518944
PDBeCIF: an open-source mmCIF/CIF parsing and processing package. PMID:34301175
2DProts: Database of Family-Wide Protein Secondary Structure Diagrams. PMID:34244700
Deep Learning for Protein-Protein Interaction Site Prediction. PMID:34236667
PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences. PMID:34228733
Identification of 13 Guanidinobenzoyl- or Aminidinobenzoyl-Containing Drugs to Potentially Inhibit TMPRSS2 for COVID-19 Treatment. PMID:34209110
R2DT is a framework for predicting and visualising RNA secondary structure using templates. PMID:34108470
PDBe Aggregated API: Programmatic access to an integrative knowledge graph of molecular structure data. PMID:34081107
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. PMID:34048576
Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds. PMID:34041266
Abundance Imparts Evolutionary Constraints of Similar Magnitude on the Buried, Surface, and Disordered Regions of Proteins. PMID:33996892
Modernized uniform representation of carbohydrate molecules in the Protein Data Bank. PMID:33978738
The Protein Data Bank Archive. PMID:33950382
Arthropod Ectoparasites Have Potential to Bind SARS-CoV-2 via ACE. PMID:33921873
Impact of structural biologists and the Protein Data Bank on small-molecule drug discovery and development. PMID:33744282
Analysing the yeast complexome-the Complex Portal rising to the challenge. PMID:33677561
Differentially conserved amino acid positions may reflect differences in SARS-CoV-2 and SARS-CoV behaviour. PMID:33560365
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. PMID:33348379
GPCRdb in 2021: integrating GPCR sequence, structure and function. PMID:33270898
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. PMID:33211869
LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification. PMID:33174598
SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals. PMID:33020502
CMNPD: a comprehensive marine natural products database towards facilitating drug discovery from the ocean. PMID:32986829
Pharmacological disruption of the Notch transcription factor complex. PMID:32601208
MISCAST: MIssense variant to protein StruCture Analysis web SuiTe. PMID:32402084
A Supramolecular Approach to Structure-Based Design with A Focus on Synthons Hierarchy in Ornithine-Derived Ligands: Review, Synthesis, Experimental and in Silico Studies. PMID:32138329
A practical overview of molecular replacement: Clostridioides difficile PilA1, a difficult case study. PMID:32133990
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604 -
The archiving and dissemination of biological structure data
PubMed citations: 18.
18 articles citing: The archiving and dissemination of biological structure data
Computational Resources for the Interpretation of Variations in Cancer. PMID:35230689
Synthesis of Anti-Inflammatory Spirostene-Pyrazole Conjugates by a Consecutive Multicomponent Reaction of Diosgenin with Oxalyl Chloride, Arylalkynes and Hydrazines or Hydrazones. PMID:35011399
The shaping of a molecular linguist: How a career studying DNA energetics revealed the language of molecular communication. PMID:34237886
Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources. PMID:33950392
SynPharm and the guide to pharmacology database: A toolset for conferring drug control on engineered proteins. PMID:33047381
Inverse pharmacology: Approaches and tools for introducing druggability into engineered proteins. PMID:31494210
Nucleobase carbonyl groups are poor Mg2+ inner-sphere binders but excellent monovalent ion binders-a critical PDB survey. PMID:30409785
A call for public archives for biological image data. PMID:30377375
COSMIC: the Catalogue Of Somatic Mutations In Cancer. PMID:30371878
COSMIC-3D provides structural perspectives on cancer genetics for drug discovery. PMID:30158682
SynPharm: A Guide to PHARMACOLOGY Database Tool for Designing Drug Control into Engineered Proteins. PMID:30087931
Where is crystallography going? PMID:29533241
R3D-BLAST2: an improved search tool for similar RNA 3D substructures. PMID:29297283
Permeating disciplines: Overcoming barriers between molecular simulations and classical structure-function approaches in biological ion transport. PMID:29258839
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj). PMID:28815765
Biocuration in the structure-function linkage database: the anatomy of a superfamily. PMID:28365730
Data archiving and availability in an era of open science. PMID:28250935
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures. PMID:27789697 - https://doi.org/10.1093/nar/gkz990
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More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
drug structure
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
electron density map
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
electron microscopy
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
nuclear magnetic resonance (nmr) spectroscopy
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein structure
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
x-ray diffraction
metasource: Fairsharing.org
version: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
3d structures
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
x-rax crystallography
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
biochemistry
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
biomacromolecular structure data
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
bionics
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
cryomicroscopy
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
cyro-electron microscopy
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
molecular biology
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
nuclear magnetic resonance spectroscopy nmrs
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
nucleid acid
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
proteins
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
standards
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
structural bioninformatics
metasource: re3data.org
version: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
nmr
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
drug structure
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
electron density map
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
electron microscopy
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
nuclear magnetic resonance (nmr) spectroscopy
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein structure
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
ribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
x-ray diffraction
metasource: Fairsharing.orgversion: FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
3d structures
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
x-rax crystallography
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
biochemistry
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
biomacromolecular structure data
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
bionics
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
cryomicroscopy
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
cyro-electron microscopy
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
molecular biology
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
nuclear magnetic resonance spectroscopy nmrs
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
nucleid acid
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
proteins
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370
standards
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
structural bioninformatics
metasource: re3data.orgversion: re3data.org: Protein Data Bank in Europe; editing status 2022-01-31; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GW37 last accessed: 2022-11-04
nmr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:54.111370
dna drug structure electron density map electron microscopy nuclear magnetic resonance (nmr) spectroscopy protein protein structure rna structure x-ray diffraction structure 3d structures x-rax crystallography biochemistry biomacromolecular structure data bionics cryomicroscopy cyro-electron microscopy molecular biology nuclear magnetic resonance spectroscopy nmrs nucleid acid proteins standards structural bioninformatics nmr
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