Tag: pathology


Found 122 sources
Source Match ReputationScore*

Human Protein Atlas


The Human Protein Atlas is program started with the aim to map of all the human proteins in cells, tissues and organs using integration of various omics technologies. It consists of three parts: Tissue Atlas showing the distribution of proteins acros ...
100%

Comparative Toxicogenomics Database


Database that aims to advance understanding about how environmental exposures affect human health. It provides manually curated information about chemical–gene/protein interactions, chemical–disease and gene–disease relationships. These data are inte ...
81%

Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource


MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. Data includes gene characterization, nomenclature, mapping, gene homo ...
78%

Disease Ontology


The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. Releases: https://githu ...
77%

DisGeNET: a knowledge base for disease genomics


DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific liter ...
74%

DAVID Bioinformatics Resources


The Database for Annotation, Visualization and Integrated Discovery (DAVID) provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes.
72%

Pseudomonas Genome DB


The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation.
67%

Rat Genome Database


The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innov ...
62%

Mouse Phenome Database


Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. Data sets are voluntarily contributed by researchers or retrieved by us from public so ...
62%

ExPASy Bioinformatics Resource Portal


Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositorie ...
61%

The Cancer Imaging Archive


The Cancer Imaging Archive (TCIA) is a service which de-identifies and hosts medical images of cancer for public download. The data are organized as “collections”; typically patients’ imaging related by a common disease (e.g. lung cancer), image moda ...
60%

Pathogen Host Interactions


PHI-Base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete ...
60%

Small Molecule Pathway Database


The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, ...
57%

TDR Targets


Identification and ranking of targets and bioactive compounds against neglected tropical diseases. TDR Targets integrates chemical and genomic information and allows users to prioritize targets and compounds to develop and repurpose new drugs and che ...
56%

Orphanet


Orphanet is gathering knowledge on orphaned drugs and rare diseases (with genes involved). Data available via http://www.orphadata.org/
52%

BioSystems


The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources. The resource provides categorical information ...
52%

H-Invitational Database


H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. By extensive analyses of all human transcripts, we provide curated annotations of human genes and transcripts that include gene structures, alternative splici ...
52%

Cellosaurus


The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines w ...
51%

MitoMiner


MitoMiner is an integrated data warehouse of mammalian localisation evidence, phenotypes and diseases. This data has been integrated to allow the creation of sophisticated data mining queries spanning many different sources. It is primarily concerned ...
50%

International Classification of Diseases Version 10


ICD-10 is the 10th revision of the International Statistical Classification of Diseases and Related Health Problems (ICD), a medical classification list by the World Health Organization. It contains codes for diseases, signs and symptoms, abnormal fi ...
50%

Integrated Pathway Analysis and Visualization System


iPAVS provides a collection of highly-structured manually curated human pathway data, it also integrates biological pathway information from several public databases and provides several tools to manipulate, filter, browse, search, analyze, visualize ...
50%

Polymorphism in microRNAs and their TargetSites


PolymiRTS (Polymorphism in microRNAs and their TargetSites) is a database of naturally occurring DNA variations in microRNA (miRNA) seed regions and miRNA target sites. MicroRNAs pair to the transcripts of protein-coding genes and cause translational ...
50%

HGMD


The Human Gene Mutation Database (HGMD) - comprehensive collection of germline mutations in nuclear genes that underlie, or are associated with, human inherited disease. It is a flexible resource that can be adapted to a broad range of applications i ...
50%

PhylomeDB


PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). Researchers are able to use this resource to visualise the history of genes with the available phylogentic trees and multiple sequence alignments.
49%

GWASdb


GWASdb comprises of collections of traits/diseases associated SNP (TASs) from current GWAS and their comprehensive functional annotations, as well as disease classifications.
48%

lncRNAdb


Long Non-Coding RNA Database
48%

LncBook


LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of human lncRNAs and systematic curation of lncRNAs by multi-omics data integration, functional annotation and disease association. It integrates multi-omics ...
46%

The Chromosome 7 Annotation Project


The objective of this project is to generate the most comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications.
46%

TransmiR


TransmiR is a database for transcription factor-microRNA regulations, which is free for academic usage.
46%

Human Histone Database


HIstome (Human histone database) is a freely available, specialist, electronic database dedicated to display information about human histone variants, sites of their post-translational modifications and about various histone modifying enzymes.
45%

PrognoScan


Database for meta-analysis of the prognostic value of genes. It has features of 1) a large collection of publicly available cancer microarray datasets with clinical annotation, as well as 2) a tool for assessing the biological relationship between ge ...
45%

Plant Resistance Gene Database


PRGdb is an open and daily updated space about plant resistance genes, in which all information about this family is stored, curated and discussed. This resource encourages research community curation of plant resistance genes.
45%

SugarBind


The SugarBind Database (SugarBindDB) was created in 2002 as part of an effort by the MITRE Corporation (http://www.mitre.org) to develop a pathogen-capture technology based on the binding of viral, bacterial and biotoxin lectins to specific glycans ( ...
44%

GeneSigDB


Gene Signature DataBase
44%

BacMap


BacMap is a picture atlas of annotated bacterial genomes. It is an interactive visual database containing hundreds of fully labeled, zoomable, and searchable maps of bacterial genomes.
44%

IMPC


International Mouse Phenotyping Consortium: an encyclopaedia of mammalian gene function
43%

database of Disease-Gene Associations with annotated Relationships


eDGAR is a database collecting and organizing the data on gene/disease associations as derived from OMIM, Humsavar and ClinVar. For each heterogeneous or polygenic disease, eDGAR provides information on the relationship among the proteins encoded by ...
43%

Type 1 Diabetes Database


T1DBase focuses on two research areas in type 1 diabetes (T1D): the genetics of T1D susceptibility and beta cell biology.
43%

Gene Expression Barcode


Gene expression data sorted into two groups: expressed and not expressed genes
43%

Orphanet Rare Diseases Ontology


Orphanet Rare Diseases Ontology (ORDO) provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.
43%

Human disease methylation database


The human disease methylation database, DiseaseMeth is a web based resource focused on the aberrant methylomes of human diseases. Until recently, bulks of large-scale data are avaible and are increasingly grown, from which more information can be min ...
42%

Geneimprint


Catalogue of genes (from different species including human) that contains general information about a gene as well as whether it is imprinted and which allele is expressed.
42%

Plant Natural Antisense Transcripts Database


Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform fo ...
42%

Digenic diseases database


DIDA (DIgenic diseases DAtabase) is a novel database that provides for the first time detailed information on genes and associated genetic variants involved in digenic diseases, the simplest form of oligogenic inheritance.
42%

Blackfan Anemia mutation database


Blackfan Anemia mutation database.
41%

PhylomeDB v3.0


It is a public database for genome-wide collections of gene phylogenies (phylomes). It is also a major source for phylogeny-based orthology and paralogy predictions. For each protein-coding gene in a seed genome, the database provides original and pr ...
41%

FGDB


Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two gene sets independently derived by automated annotation of the ...
40%

Allosteric Database


Allostery is the most direct and efficient way for regulation of biological macromolecule function induced by the binding of a ligand at an allosteric site topographically distinct from the orthosteric site. Due to the inherent high receptor selectiv ...
40%

CADgene


Coronary Artery Disease gene database
40%

Osteogenesis imperfecta collagen mutation


All published accounts of variants resulting in osteogenesis imperfecta. Such variants occur in the COL1A1, COL1A2, CRTAP and LEPRE1 genes.
40%

Human Disease-Related Viral Integration Sites


Dr.VIS collects and locates human disease-related viral integration sites. So far, about 600 sites covering 5 virus organisms and 11 human diseases are available. Integration sites in Dr.VIS are located against chromesome, cytoband, gene and refseq p ...
40%

PhenoDigm


Analyzing curated annotations to associate animal models with human diseases.
40%

A database for spatially resolved transcriptomes


Spatially resolved transcriptomics providing gene expression profiles with positional information is key to tissue function and fundamental to disease pathology. SpatialDB is the first public database that specifically curates spatially resolved tran ...
39%

DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks


The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) results by making it easy to query and visualize disease-associated SNPs and genes in their chromosomal context.
39%

LincSNP


Association of human lncRNAs with disease-related SNPs
39%

REPAIRtoire


DNA repair pathways of human, yeast and E.coli
39%

dbCRID


Database of Chromosomal Rearrangements In Diseases
39%

GenAtlas


GenAtlas is a database containing information on human genes, markers and phenotypes.
39%

DBASS5/3


Database of Aberrant Splice Sites: sequences flanking cryptic and de novo 3' and 5' splice sites
39%

Ebola and Hemorrhagic Fever Virus Database


The Ebola and Hemorrhagic Fever Virus Database stems from the Hemorrhagic Fever Viruses (HFV) Database Project founded by Dr. Carla Kuiken in 2009 at the Los Alamos National Laboratory (LANL). The HFV Database was modeled on the Los Alamos HIV Databa ...
39%

Immunodeficiency mutation databases (IDbases)


Locus-specific databases for immunodeficiency-causing mutations.
39%

SwissVar


A portal to search variants (polymorphism) in UniProt Knowledgebase (UniProtKB) entries, and gives direct access to manual annotation on the genotype-phenotype relationship of each specific variant based on literature, as well as pre-computed informa ...
38%

PolygenicPathways


The datasets list genes, environmental risk factors and autoantibodies in a number of polygenic diseases and provide KEGG pathway analysis etched out by susceptibility genes. Host/pathogen interactions are also characterised for herpes simplex, helic ...
38%

IGDD


Indian Genetic Disease Database
38%

HGVbase


Attempt to summarize all known sequence variations in the human genome, to facilitate research into how genotypes affect common diseases, drug responses, and other complex phenotypes.
38%

NSDNA


Nervous System Disease NcRNAome Atlas
38%

PhosSNP


A database of phosphorylation-related SNP (phosSNP) which are non-synonymous SNP (nsSNP) that affect the protein phosphorylation status. Using an in-house developed kinase-specific phosphorylation site predictor (GPS 2.0), we computationally detected ...
37%

PolyQ


Polyglutamine Repeats in Proteins
37%

FunSimMat


Gene Ontology-based functional similarity values for proteins and protein families
37%

ESP


NHLBI Exome Sequencing Project (ESP): Exome Variant Server (EVS) for browsing single nucleotide variation data from exome sequencing experiments mainly focused on heart, lung and blood disorders.
37%

SpliceDisease DB


Linking RNA splicing and disease. Database that collects and curates data of RNA Splicing mutation and disease. The RNA Splicing mutations include cis-acting mutations that disrupt splicing and trans-acting mutations that affecting RNA-dependent func ...
37%

Satellog


Satellog is a database that catalogs all pure 1-16 repeat unit satellite repeats in the human genome along with supplementary data. Satellog analyzes each pure repeat in UniGene clusters for evidence of repeat polymorphism.
37%

DNAtraffic


A database for systems biology of DNA dynamics during the cell life.
37%

miRGator v2.0


miRGator is an integrated database of microRNA (miRNA)-associated gene expression, target prediction, disease association and genomic annotation for the functional investigation of miRNA. miRGator v2.0 contains information about : 1) Human miRNA expr ...
37%

GeMInA


The Gemina system (http://gemina.igs.umaryland.edu) identifies, standardizes and integrates the outbreak metadata for the breadth of NIAID category A–C viral and bacterial pathogens (http://www3.niaid.nih.gov/biodefense/PDF/cat.pdf), thereby p ...
37%

PsyGeNET


Psychiatric disorders and Genes association NETwork. Exploratory analysis of psychiatric diseases and their associated genes.
36%

CentoMD


Genetic mutation database for rare diseases that enables to search, sort and filter genetic variants from clinically diagnosed individuals worldwide and make symptoms-based queries.
36%

Pathema


It is a site for understanding, detecting, diagnosing and treating an established set of six target NIAID Category A-C pathogens. Each target pathogen is represented in one of four distinct clade-specific Pathema web resources and underlying database ...
35%

NIAS


Databases for genetic resources and plant disease information
35%

KnockTF


Transcription factors (TFs) and their target genes have important functions in human diseases and biological processes. Gene expression profile analysis before and after knockdown or knockout is one of the most important strategies for obtaining targ ...
35%

HumCFS


Manually curated database of human chromosomal fragile sites. HumCFS provides useful information on fragile sites such as coordinates on the chromosome, cytoband, their chemical inducers and frequency of fragile site (rare or common), genes and miRNA ...
35%

LncTarD


A manually-curated database of experimentally-supported functional lncRNA-target regulations in human diseases. Search and download the information for the Mutual exclusivity. MutExGenome is a database of Mutual Exclusive mutations in mutiple specie ...
35%

Aureolib


Proteomic signature library of Staphylococcus aureus Pathophysiology for inter-experimental expression data analyses.
35%

Laminin Database


Laminins (LM) correspond to a large number of heretotrimeric glycoproteins, playing and a major role in several cell functions, including differentiation, proliferation, adhesion, and migration [1-3]. In addition to binding to other extracellular mat ...
34%

LnCeVar


A comprehensive database of genomic variations that disturb ceRNA network regulation. Genomic VA,T,C,G RIATION disturbing ceRNA regulations. LnCeVar is a comprehensive database that aims to infer genomic variations that disturb lncRNA-associated ce ...
34%

PAGER


Pathway, Annotated-list, and Gene-signature Electronic Repository.
34%

VnD


Consolidated database containing information on diseases, related genes and genetic variations, protein structures and drug information. The database is a useful platform for researchers studying the underlying mechanism for association among genetic ...
34%

T-psi-C


user friendly database of tRNA sequences and structures. Discover the best tRNA database available!. There is simplified list of what you can do:. Search by sequence, structure and other properties. See available and generated models
33%

VDJbase


an adaptive immune receptor genotype and haplotype database. The adaptive immune receptor Genotype and Haplotype database. 11-Oct-2019 *NEW* - VDJbase is described in Nucleic Acids Research. VDJbase is a publicly available database that offers eas ...
33%

HDAM


A resource of human disease associated mutations from next generation sequencing studies.
33%

circR2Disease


Predicting circRNA-Disease Associations Based on Improved Collaboration Filtering Recommendation System With Multiple Data. March 31, 2018, the CircR2Disease has been updated. Circular RNAs (circRNAs) are widely expressed in diverse eukaryotic spec ...
33%

Muscle Gene Sets


Versatile methodological aid to functional genomics in the neuromuscular field.
32%

inTB


Data integration platform for molecular and clinical epidemiological analysis of tuberculosis.
32%

Clotbase


A curated knowledgebase on the proteins that are involved in the blood coagulation pathway. It contains information on sequence, accession number, source, taxonomy, keywords, function, subcellular location, tissue specificity, associated diseases, mu ...
32%

MouseBytes


Open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment. Mousebytes-An-open-access-high-throughput-pipeline-and-database-for-rodent-touchscreen-based-data. This code is associated with the paper from Bera ...
32%

PCOSBase


A manually curated database of polycystic ovarian syndrome. Nor Afiqah-Aleng, Sarahani Harun, Mohd Rusman Arief A-Rahman, Nor Azlan Nor Muhammad, Zeti-Azura Mohamed-Hussein, PCOSBase: a manually curated database of polycystic ovarian syndrome, Datab ...
32%

dbMMR-Chinese


Variants of DNA mismatch repair genes derived from 33,998 Chinese individuals with and without cancer reveal their highly ethnic-specific nature. An open-access database of DNA mismatch repair (MMR) gene variants in Chinese population. DNA mismatch ...
32%

HmtVar


A data and text mining pipeline to annotate human mitochondrial variants with functional and clinical information. The main web resource to explore human mitochondrial variability data and their pathological correlation. HmtVar is a manually-curate ...
32%

MIRKB


A myocardial infarction risk knowledge base. Myocardial Infarction Risk Knowledge Base. MIRKB (the Myocardial Infarction Risk Knowledge Base) is a database that collected single factors, combined factors, and risk models which are article-supported ...
32%

miR2Diabetes


A Literature-Curated Database of microRNA Expression Patterns, in Diabetic Microvascular Complications. miR2Diabetes aims to provide a comprehensive resource of miRNA dysregulation in diabetic microvascular complications (DMC). Each entry in the miR2 ...
32%

GRNdb


TF-target relationsips inferred from single cell and bulk RNA-seq datasets
31%

Orthodisease


A database of disease gene orthologs.
29%

The Ca2+ genome database


Mapping genes for calcium signaling and their associated human genetic disorders.
29%

HAMdb


Database of human autophagy modulators with specific pathway and disease information.
29%

Collagen Mutation Database (CMD)


Database of osteogenesis imperfecta and type III collagen variants.
29%

Mouse Tumor Biology Database


The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by providing electronic access to: Information on endogenous spontaneous and induced tumors in mice, including tumor frequency & latency data, ...
29%

SCMVTDb


Plant virus interaction mechanism and associated pathways in mosaic disease of small cardamom (Elettaria cardamomum Maton) by RNA-Seq approach.
29%

Gliome database


A comprehensive web-based tool to access and analyze glia secretome data. Gliome Database has the following feature regarding glia-secreted proteins.
29%

ADVP


ADVP is a platform for the public community to browse, search and understand Alzheimer's Disease genetics findings easily. .
29%

Gene4PD


a comprehensive genetic database of Parkinson's disease. Gene4PD: an integrative genomic database and analytic platform for Parkinson's disease. Rare variants identified from PD patients.
29%

ADEx: Autoimmune Diseases Explorer


A comprehensive and centralized database for exploring omics data in Autoimmune Diseases. The database that integrates 82 curated transcriptomics and methylation studies covering 5609 samples for some of the most common autoimmune diseases.
29%

BDdb


BDdb is a comprehensive database associated with birth-defect-related diseases. It consists of multi-omics datasets involving tens of common birth-defect diseases, and BDdb supplements more than 2000 biomarkers belonging to 22 types of birth defects.
29%

GeneSNPs


Gene-centric map of the genome structure, coding sequences, and identified allelic variation in genes being targeted for a role in disease susceptibility by the NIEHS (National Institute of Evironmental Health Sciences). This database provides a grap ...
29%

PharmOmics


PharmOmics is a A Species- and Tissue-specific Drug Signature Database and Online Tool for Toxicity Prediction and Drug Repurposing. It is a Web server for Identifying Pathological Pathways, Networks, and Key Regulators via Multidimensional Data Inte ...
29%

HisgAtlas


A human immunosuppression gene database. HisgAtlas is the first database that stores a list of immunosuppression genes collected by literature mining and manual curation. 995 human immunosuppression genes and 260 associated diseases are collected in ...
29%

MPIC


Molecular Prognostic Indicators in Cirrhosis Database for Clinical Context-Specific in Silico Prognostic Biomarker Validation. Molecular Prognostic Indicators in Cirrhosis. Database for clinical context-specific in silico prognostic biomarker valid ...
29%

AIDA Data Hub


The AIDA data hub is a place where researchers can collaboratively gather, annotate, share and enrich large volumes of research data for machine learning in medical imaging diagnostics.
29%

PulmonDB


a curated lung disease gene expression database | An accessible R package to download PulmonDB data | PulmonDB is a transcriptomic database of IPF and COPD with curated annotation | PulmonDB is a gene expression database with Chronic Obstructive Pulm ...
29%

HeartBioPortal2.0


New developments and updates for genetic ancestry and cardiometabolic quantitative traits in diverse human populations. Internet-of-omics for human cardiovascular disease data. HeartBioPortal is now the largest human cardiovascular disease genetics ...
29%

GRONS


A comprehensive genetic resource of nicotine and smoking. Genetic resources of nicotine and smoking. Genetic Resources Of Nicotine and Smoking (GRONS) is a database devoted to provide a comprehensive and systematic collection of cross-platform gene ...
29%

FluNet


Tools for Influenza Activity and Surveillance. U.S. Influenza Surveillance System. Overview of Influenza Surveillance in the United States - CDC. Centers for Disease Control and Prevention. CDC twenty four seven. Saving Lives, Protecting People. ...
29%

Hepamine


A Liver Disease Microarray Database, Visualization Platform and Data-Mining Resource. Providing Bioinformatics Data For The Study Of Liver Diseases. a liver disease microarray database, visualization platform and data-mining resource. Hepamine was ...
29%

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