T-psi-C
Names
More detailed information about this field from each metasource.
T-psi-C
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
tpsic
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
T-psi-C: user friendly database of tRNA sequences and structures
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
T-psi-C
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
tpsic
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
T-psi-C: user friendly database of tRNA sequences and structures
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Other names: tpsic, T-psi-C: user friendly database of tRNA sequences and structures
Names
More detailed information about this field from each metasource.
T-psi-C
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
tpsic
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
T-psi-C: user friendly database of tRNA sequences and structures
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
T-psi-C is a database of tRNA sequences and 3D tRNA structures. The T-psi-C database can be continuously updated by any member of the scientific community.
Description
More detailed information about this field from each metasource.
T-psi-C is a database of tRNA sequences and 3D tRNA structures. The T-psi-C database can be continuously updated by any member of the scientific community.
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
tRNAs have been widely studied for their role as genetic code decoders in the ribosome during translation, but have recently received new attention due to the discovery of novel roles beyond decoding, often in connection with human diseases. Yet, existing tRNA databases have not been updated for more than a decade, so they do not contain this new functional information and have not kept pace with the rate of discovery in this field. Therefore, a regularly updated database that contains information about newly discovered characteristics of tRNA molecules and can be regularly updated is strongly needed. The T-psi-C database is an up-to-date collection of tRNA sequences (1030 sequences at the publication date). This database also contains 3D tRNA structures obtained from Protein Data Bank and generated using homology modeling. The T-psi-C database can be continuously updated by any member of the scientific community, and contains its own application programming interface (API), which allows users to retrieve or upload data in JSON format. Altogether, T-psi-C is user-friendly, easy to develop and an up-to-date source of knowledge about tRNAs.Database is freely available at: http://tpsic.igcz.poznan.pl
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
user friendly database of tRNA sequences and structures. Discover the best tRNA database available!. There is simplified list of what you can do:. Search by sequence, structure and other properties. See available and generated models
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:25.652706
Webpage:
http://tpsic.igcz.poznan.pl/Webpage
More detailed information about this field from each metasource.
http://tpsic.igcz.poznan.pl/
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://tpsic.igcz.poznan.pl
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
Publications:
Publications
More detailed information about this field from each metasource.
T-psi-C: user friendly database of tRNA sequences and structures
PMID: 31624839
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
http://dx.doi.org/10.1093/nar/gkz922
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
T-psi-C: user friendly database of tRNA sequences and structures
PMID: 31624839
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
http://dx.doi.org/10.1093/nar/gkz922
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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T-psi-C: user friendly database of tRNA sequences and structures
PubMed citations: 8.
8 articles citing: T-psi-C: user friendly database of tRNA sequences and structures
Required Elements in tRNA for Methylation by the Eukaryotic tRNA (Guanine-N2-) Methyltransferase (Trm11-Trm112 Complex). PMID:35409407
"Superwobbling" and tRNA-34 Wobble and tRNA-37 Anticodon Loop Modifications in Evolution and Devolution of the Genetic Code. PMID:35207539
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs. PMID:34747466
Non-Redundant tRNA Reference Sequences for Deep Sequencing Analysis of tRNA Abundance and Epitranscriptomic RNA Modifications. PMID:33435213
Building a tRNA thermometer to estimate microbial adaptation to temperature. PMID:33196821
Systematics for types and effects of RNA variations. PMID:32951567
A Census and Categorization Method of Epitranscriptomic Marks. PMID:32630140
Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168. PMID:32629984 - http://dx.doi.org/10.1093/nar/gkz922
Tags:
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
nucleic acid sequence
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna sequence
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
transfer rna
metasource: Fairsharing.org
version: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
molecular biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
database management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
rna-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:25.652706
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
nucleic acid sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
transfer rna
metasource: Fairsharing.orgversion: FAIRsharing.org: tpsic; T-psi-C; DOI: https://doi.org/10.25504/FAIRsharing.83jovl; Last edited: Jan. 21, 2020, 11:02 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:25.652706
molecular biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:25.652706
database management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:25.652706
rna-seq
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:25.652706
pathology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:25.652706
molecular structure nucleic acid sequence rna sequence structure transfer rna rna sequence functional, regulatory and non-coding rna molecular biology data management rna sequence pathology
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