Pathogen Host Interactions
Names
More detailed information about this field from each metasource.
Pathogen Host Interactions
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
PHI-base
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
phi-base
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
Names
More detailed information about this field from each metasource.
Pathogen Host Interactions
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
PHI-base
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
phi-base
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:15.242488
Other names: PHI-base, phi-base
Names
More detailed information about this field from each metasource.
Pathogen Host Interactions
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
PHI-base
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
phi-base
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:15.242488
PHI-Base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts.
Description
More detailed information about this field from each metasource.
PHI-Base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts.
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
To utilise effectively the growing number of verified genes that mediate an organism’s ability to cause disease and / or to trigger host responses, we have developed PHI-base. This is a web-accessible database that currently catalogues 405 experimentally verified pathogenicity, virulence and effector genes from 54 fungal and Oomycete pathogens, of which 176 are from animal pathogens, 227 from plant pathogens and 3 from pathogens with a fungal host. PHI-base is the first on-line resource devoted to the identification and presentation of information on fungal and Oomycete pathogenicity genes and their host interactions. As such, PHI-base is a valuable resource for the discovery of candidate targets in medically and agronomically important fungal and Oomycete pathogens for intervention with synthetic chemistries and natural products. Each entry in PHI-base is curated by domain experts and supported by strong experimental evidence (gene / transcript disruption experiments) as well as literature references in which the experiments are described. Each gene in PHI-base is presented with its nucleotide and deduced amino acid sequence as well as a detailed description of predicted protein’s function during the host infection process. To facilitate data interoperability, we have annotated genes using controlled vocabularies (Gene Ontology terms, EC Numbers, etc.), and provide links to other external data sources (for example, NCBI taxonomy and EMBL). We welcome new data for inclusion in PHI-base, which is freely accessed at: www4.rothamsted.bbsrc.ac.uk/phibase/.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
PHI-base is a web-accessible database that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is therfore an invaluable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention. In collaboration with the FRAC team, PHI-base also includes antifungal compounds and their target genes.
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
PHI-base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen–host interactions reported in peer reviewed research articles.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:15.242488
Webpage:
http://www.phi-base.org/Webpage
More detailed information about this field from each metasource.
http://www.phi-base.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
Copyrights
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://www.phi-base.org/disclaimer.htm
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
PHI-base: a new database for pathogen host interactions
PMID: 16381911
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
The Pathogen-Host Interactions database (PHI-base): additions and future developments
PMID: 25414340
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database
PMID: 27915230
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
PHI-base update: additions to the pathogen host interaction database
PMID: 17942425
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/nar/gku1165
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
PHI-base: a new database for pathogen host interactions
PMID: 16381911
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
The Pathogen-Host Interactions database (PHI-base): additions and future developments
PMID: 25414340
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database
PMID: 27915230
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
PHI-base update: additions to the pathogen host interaction database
PMID: 17942425
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/nar/gku1165
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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PHI-base: a new database for pathogen host interactions
PubMed citations: 117.
117 articles citing: PHI-base: a new database for pathogen host interactions
Comparative Genomic Analyses Provide Insight Into the Pathogenicity of Metschnikowia bicuspidata LNES0119. PMID:35770163
Comparative Analysis of Transcriptomes of Ophiostoma novo-ulmi ssp. americana Colonizing Resistant or Sensitive Genotypes of American Elm. PMID:35736120
Seed-Borne Erwinia persicina Affects the Growth and Physiology of Alfalfa (Medicago sativa L.). PMID:35694312
Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence. PMID:35283890
Genomic Analyses of the Fungus Paraconiothyrium sp. Isolated from the Chinese White Wax Scale Insect Reveals Its Symbiotic Character. PMID:35205383
Haloterrigena gelatinilytica sp. nov., a new extremely halophilic archaeon isolated from salt-lake. PMID:35166931
Fusarium graminearum Infection Strategy in Wheat Involves a Highly Conserved Genetic Program That Controls the Expression of a Core Effectome. PMID:35163834
Genomic analysis of Elsinoë arachidis reveals its potential pathogenic mechanism and the biosynthesis pathway of elsinochrome toxin. PMID:34914789
The small-secreted cysteine-rich protein CyrA is a virulence factor participating in the attack of Caenorhabditis elegans by Duddingtonia flagrans. PMID:34735554
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14. PMID:34682252
Whole-genome assembly of Ganoderma leucocontextum (Ganodermataceae, Fungi) discovered from the Tibetan Plateau of China. PMID:34586388
Comparative Whole-Genome Sequence Analyses of Fusarium Wilt Pathogen (Foc R1, STR4 and TR4) Infecting Cavendish (AAA) Bananas in India, with a Special Emphasis on Pathogenicity Mechanisms. PMID:34575755
Genome-Wide Analysis of Four Pathotypes of Wheat Rust Pathogen (Puccinia graminis) Reveals Structural Variations and Diversifying Selection. PMID:34575739
In Vitro Secretome Analysis Suggests Differential Pathogenic Mechanisms between Fusarium oxysporum f. sp. cubense Race 1 and Race 4. PMID:34572566
Analysis of the Taxonomy and Pathogenic Factors of Pectobacterium aroidearum L6 Using Whole-Genome Sequencing and Comparative Genomics. PMID:34276610
Comparative Genomics of Eight Fusarium graminearum Strains with Contrasting Aggressiveness Reveals an Expanded Open Pangenome and Extended Effector Content Signatures. PMID:34200775
De novo genome sequencing of mycoparasite Mycogone perniciosa strain MgR1 sheds new light on its biological complexity. PMID:34138459
Complete Genome Sequence Analysis of Brevibacillus laterosporus Bl-zj Reflects its Potential Algicidal Response. PMID:33649996
An Integrative Computational Approach for the Prediction of Human-Plasmodium Protein-Protein Interactions. PMID:33426052
Comparative Genomics Analysis Provides New Strategies for Bacteriostatic Ability of Bacillus velezensis HAB-2. PMID:33281792
Whole-Genome Sequencing and Bioinformatics Analysis of Apiotrichum mycotoxinivorans: Predicting Putative Zearalenone-Degradation Enzymes. PMID:32849454
Co-Occurrence of the bla KPC-2 and Mcr-3.3 Gene in Aeromonas caviae SCAc2001 Isolated from Patients with Diarrheal Disease. PMID:32547122
Comparative transcriptome analysis of two Cercospora sojina strains reveals differences in virulence under nitrogen starvation stress. PMID:32546122
Genomic and Phenotypic Heterogeneity of Clinical Isolates of the Human Pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis. PMID:32477406
Genome Sequencing and Analysis of the Fungal Symbiont of Sirex noctilio, Amylostereum areolatum: Revealing the Biology of Fungus-Insect Mutualism. PMID:32404513
Identifying Candida albicans Gene Networks Involved in Pathogenicity. PMID:32391057
Traditional Chinese Medicine and Gut Microbiome: Their Respective and Concert Effects on Healthcare. PMID:32390855
EffHunter: A Tool for Prediction of Effector Protein Candidates in Fungal Proteomic Databases. PMID:32375409
Reference Genome Assembly for Australian Ascochyta rabiei Isolate ArME14. PMID:32345704
Contents, Construction Methods, Data Resources, and Functions Comparative Analysis of Bacteria Databases. PMID:32071553
PHI-base: the pathogen-host interactions database. PMID:31733065
Active Fungal Communities in Asymptomatic Eucalyptus grandis Stems Differ between a Susceptible and Resistant Clone. PMID:31547186
Decreased metabolism and increased tolerance to extreme environments in Staphylococcus warneri during long-term spaceflight. PMID:31414557
Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases. PMID:31411700
noxB-based marker for Alternaria spp.: a new diagnostic marker for specific and early detection in crop plants. PMID:31218173
Integrated transcriptomic and secretomic approaches reveal critical pathogenicity factors in Pseudofabraea citricarpa inciting citrus target spot. PMID:31162831
Cyberbiosecurity Challenges of Pathogen Genome Databases. PMID:31157218
De novo genome sequencing and secretome analysis of Tilletia indica inciting Karnal bunt of wheat provides pathogenesis-related genes. PMID:31114743
Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics. PMID:31101009
Complete Genome Sequence Analysis and Characterization of Selected Iron Regulation Genes of Pasteurella Multocida Serotype A Strain PMTB2.1. PMID:30691021
Comparative genomic analysis revealed rapid differentiation in the pathogenicity-related gene repertoires between Pyricularia oryzae and Pyricularia penniseti isolated from a Pennisetum grass. PMID:30545292
Prediction of pathogenesis-related secreted proteins from Stemphylium lycopersici. PMID:30458731
Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus. PMID:30285612
Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum. PMID:30278048
Introgression and gene family contraction drive the evolution of lifestyle and host shifts of hypocrealean fungi. PMID:30181924
FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes. PMID:30152809
The Interactomic Analysis Reveals Pathogenic Protein Networks in Phomopsis longicolla Underlying Seed Decay of Soybean. PMID:29666630
Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi. PMID:29540755
Genomic Understanding of an Infectious Brain Disease from the Desert. PMID:29326229
Whole Genome Sequencing of Fusarium fujikuroi Provides Insight into the Role of Secretory Proteins and Cell Wall Degrading Enzymes in Causing Bakanae Disease of Rice. PMID:29230233
Identification of candidate pathogenicity determinants of Rhizoctonia solani AG1-IA, which causes sheath blight disease in rice. PMID:29196814
Comparative Genomics of Pathogenic and Nonpathogenic Beetle-Vectored Fungi in the Genus Geosmithia. PMID:29186370
Comparative Genome Analysis Reveals Adaptation to the Ectophytic Lifestyle of Sooty Blotch and Flyspeck Fungi. PMID:29126189
A draft genome sequence of the rose black spot fungus Diplocarpon rosae reveals a high degree of genome duplication. PMID:28981525
Apophysomyces variabilis: draft genome sequence and comparison of predictive virulence determinants with other medically important Mucorales. PMID:28923009
Genome sequencing and comparative genomics reveal a repertoire of putative pathogenicity genes in chilli anthracnose fungus Colletotrichum truncatum. PMID:28846714
Comparative Transcriptomic Analysis of Race 1 and Race 4 of Fusarium oxysporum f. sp. cubense Induced with Different Carbon Sources. PMID:28468818
Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism. PMID:28417959
Genomics and Comparative Genomic Analyses Provide Insight into the Taxonomy and Pathogenic Potential of Novel Emmonsia Pathogens. PMID:28409126
A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola. PMID:28073340
Localization and Transcriptional Responses of Chrysoporthe austroafricana in Eucalyptus grandis Identify Putative Pathogenicity Factors. PMID:28008326
PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database. PMID:27915230
Comparative genomics of Beauveria bassiana: uncovering signatures of virulence against mosquitoes. PMID:27905873
Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors. PMID:27809762
Large-scale molecular genetic analysis in plant-pathogenic fungi: a decade of genome-wide functional analysis. PMID:27733021
Draft Genome of the Wheat Rust Pathogen (Puccinia triticina) Unravels Genome-Wide Structural Variations during Evolution. PMID:27521814
Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response. PMID:27514986
A review on host-pathogen interactions: classification and prediction. PMID:27470504
De novo Transcriptome Sequencing to Dissect Candidate Genes Associated with Pearl Millet-Downy Mildew (Sclerospora graminicola Sacc.) Interaction. PMID:27446100
Genome sequence and comparative analysis of clavicipitaceous insect-pathogenic fungus Aschersonia badia with Metarhizium spp. PMID:27189621
Comparative Genomics of Pathogens Causing Brown Spot Disease of Tobacco: Alternaria longipes and Alternaria alternata. PMID:27159564
Draft genome sequencing and secretome analysis of fungal phytopathogen Ascochyta rabiei provides insight into the necrotrophic effector repertoire. PMID:27091329
Rhamnose synthase activity is required for pathogenicity of the vascular wilt fungus Verticillium dahliae. PMID:26996832
Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes. PMID:26988094
DemaDb: an integrated dematiaceous fungal genomes database. PMID:26980516
Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility. PMID:26973660
A Survey of the Gene Repertoire of Gigaspora rosea Unravels Conserved Features among Glomeromycota for Obligate Biotrophy. PMID:26973612
Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. PMID:26945779
In planta Identification of Putative Pathogenicity Factors from the Chickpea Pathogen Ascochyta rabiei by De novo Transcriptome Sequencing Using RNA-Seq and Massive Analysis of cDNA Ends. PMID:26648917
Genomic Patterns of Positive Selection at the Origin of Rust Fungi. PMID:26632820
Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties. PMID:26573512
Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi. PMID:26511477
The trans-kingdom identification of negative regulators of pathogen hypervirulence. PMID:26468211
Computational analysis of protein interaction networks for infectious diseases. PMID:26261187
Genome-Wide Analysis of Simple Sequence Repeats and Efficient Development of Polymorphic SSR Markers Based on Whole Genome Re-Sequencing of Multiple Isolates of the Wheat Stripe Rust Fungus. PMID:26068192
Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. PMID:25716828
Computational prediction of molecular pathogen-host interactions based on dual transcriptome data. PMID:25705211
Network representations of immune system complexity. PMID:25625853
The Pathogen-Host Interactions database (PHI-base): additions and future developments. PMID:25414340
Natural selection on coding and noncoding DNA sequences is associated with virulence genes in a plant pathogenic fungus. PMID:25193312
Identification and functional analysis of AG1-IA specific genes of Rhizoctonia solani. PMID:25070039
Genome sequence and virulence variation-related transcriptome profiles of Curvularia lunata, an important maize pathogenic fungus. PMID:25056288
Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8. PMID:24810276
Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection. PMID:24672531
A multi-omic analysis of an Enterococcus faecium mutant reveals specific genetic mutations and dramatic changes in mRNA and protein expression. PMID:24373636
A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi. PMID:24252298
Genomic mechanisms accounting for the adaptation to parasitism in nematode-trapping fungi. PMID:24244185
Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PMID:23861834
The transition from a phytopathogenic smut ancestor to an anamorphic biocontrol agent deciphered by comparative whole-genome analysis. PMID:23800965
eFG: an electronic resource for Fusarium graminearum. PMID:23798489
Sequencing and annotation of the Ophiostoma ulmi genome. PMID:23496816
De novo transcriptome sequencing and analysis for Venturia inaequalis, the devastating apple scab pathogen. PMID:23349770
DFVF: database of fungal virulence factors. PMID:23092926
BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference. PMID:22689642
OmniMapFree: a unified tool to visualise and explore sequenced genomes. PMID:22085540
Genomic and proteomic analyses of the fungus Arthrobotrys oligospora provide insights into nematode-trap formation. PMID:21909256
Computer aided selection of candidate vaccine antigens. PMID:21067543
The potential for pathogenicity was present in the ancestor of the Ascomycete subphylum Pezizomycotina. PMID:20964831
Combining ChIP-chip and expression profiling to model the MoCRZ1 mediated circuit for Ca/calcineurin signaling in the rice blast fungus. PMID:20502632
The prediction of protein-protein interaction networks in rice blast fungus. PMID:18976500
Functional genomics in the rice blast fungus to unravel the fungal pathogenicity. PMID:18837101
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis. PMID:18523684
Expressed Sequence Tags from the oomycete Plasmopara halstedii, an obligate parasite of the sunflower. PMID:18062809
PHI-base update: additions to the pathogen host interaction database. PMID:17942425
Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes. PMID:17692127
PHIDIAS: a pathogen-host interaction data integration and analysis system. PMID:17663773
Parallels in fungal pathogenesis on plant and animal hosts. PMID:17041185 -
The Pathogen-Host Interactions database (PHI-base): additions and future developments
PubMed citations: 101.
101 articles citing: The Pathogen-Host Interactions database (PHI-base): additions and future developments
PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web. PMID:35776535
Genome sequence and pathogenicity of Vibrio vulnificus strain MCCC 1A08743 isolated from contaminated prawns. PMID:35766638
Complete Genome Analysis of Highly Pathogenic Non-O1/O139 Vibrio cholerae Isolated From Macrobrachium rosenbergii Reveals Pathogenicity and Antibiotic Resistance-Related Genes. PMID:35664858
The First Whole Genome Sequence Discovery of the Devastating Fungus Arthrinium rasikravindrae. PMID:35330257
Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence. PMID:35283890
Complete Genome Sequencing and Comparative Analysis of the Clinically-Derived Apiotrichum mycotoxinivorans Strain GMU1709. PMID:35186802
Two Novel Dimorphism-Related Virulence Factors of Zymoseptoria tritici Identified Using Agrobacterium-Mediated Insertional Mutagenesis. PMID:35008825
Network analysis of host-pathogen protein interactions in microbe induced cardiovascular diseases. PMID:35001887
Comparative analysis of Phytophthora genomes data. PMID:34926741
Genomic signatures and insights into host niche adaptation of the entomopathogenic fungus Metarhizium humberi. PMID:34865006
PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions. PMID:34788826
Identification of FadT as a Novel Quorum Quenching Enzyme for the Degradation of Diffusible Signal Factor in Cupriavidus pinatubonensis Strain HN-2. PMID:34576026
Complete Genomic Characterization and Identification of Saccharomycopsisphalluae sp. nov., a Novel Pathogen Causes Yellow Rot Disease on Phallus rubrovolvatus. PMID:34575745
Genomic Characteristics and Comparative Genomics Analysis of Two Chinese Corynespora cassiicola Strains Causing Corynespora Leaf Fall (CLF) Disease. PMID:34208763
Dual RNA-Sequencing Analysis of Resistant (Pinus pinea) and Susceptible (Pinus radiata) Hosts during Fusarium circinatum Challenge. PMID:34063405
Complete genome sequence of the Clostridium difficile LCL126. PMID:33896381
Comparative genome analyses suggest a hemibiotrophic lifestyle and virulence differences for the beech bark disease fungal pathogens Neonectria faginata and Neonectria coccinea. PMID:33693679
In-depth secretome analysis of Puccinia striiformis f. sp. tritici in infected wheat uncovers effector functions. PMID:33275764
Reference genes for gene expression analysis in the fungal pathogen Neonectria ditissima and their use demonstrating expression up-regulation of candidate virulence genes. PMID:33186359
The carbapenem resistance gene blaOXA-23 is disseminated by a conjugative plasmid containing the novel transposon Tn6681 in Acinetobacter johnsonii M19. PMID:33168102
Whole-Genome Sequencing Analysis of Quorum Quenching Bacterial Strain Acinetobacter lactucae QL-1 Identifies the FadY Enzyme for Degradation of the Diffusible Signal Factor. PMID:32937869
Whole-Genome Sequencing and Bioinformatics Analysis of Apiotrichum mycotoxinivorans: Predicting Putative Zearalenone-Degradation Enzymes. PMID:32849454
Pathogenomics and Management of Fusarium Diseases in Plants. PMID:32369942
ORF Ι of Mycovirus SsNSRV-1 is Associated with Debilitating Symptoms of Sclerotinia sclerotiorum. PMID:32316519
Comparative genomics and association analysis identifies virulence genes of Cercospora sojina in soybean. PMID:32075575
Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis. PMID:32050896
Complete Genome Sequence Reveals Evolutionary and Comparative Genomic Features of Xanthomonas albilineans Causing Sugarcane Leaf Scald. PMID:32012870
PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets. PMID:31866958
PHI-base: the pathogen-host interactions database. PMID:31733065
Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae. PMID:31660859
Zinc binding proteome of a phytopathogen Xanthomonas translucens pv. undulosa. PMID:31598288
First Draft Genome Sequence of Wheat Spot Blotch Pathogen Bipolaris sorokiniana BS_112 from India, Obtained Using Hybrid Assembly. PMID:31537657
Dual RNA-Seq Analysis of the Pine-Fusarium circinatum Interaction in Resistant (Pinus tecunumanii) and Susceptible (Pinus patula) Hosts. PMID:31487786
The Phytopathogenic Fungus Pallidocercospora crystallina-Caused Localized Subcutaneous Phaeohyphomycosis in a Patient with a Homozygous Missense CARD9 Mutation. PMID:31414217
Proteomic study of the membrane components of signalling cascades of Botrytis cinerea controlled by phosphorylation. PMID:31285484
Secretome Profiling Reveals Virulence-Associated Proteins of Fusarium proliferatum during Interaction with Banana Fruit. PMID:31234604
Integrated transcriptomic and secretomic approaches reveal critical pathogenicity factors in Pseudofabraea citricarpa inciting citrus target spot. PMID:31162831
Comparative genomic analysis of monosporidial and monoteliosporic cultures for unraveling the complexity of molecular pathogenesis of Tilletia indica pathogen of wheat. PMID:31160715
First Draft Genome Sequence of a Pearl Millet Blast Pathogen, Magnaporthe grisea Strain PMg_Dl, Obtained Using PacBio Single-Molecule Real-Time and Illumina NextSeq 500 Sequencing. PMID:31097510
Comparative Genome and Transcriptome Study of the Gene Expression Difference Between Pathogenic and Environmental Strains of Prototheca zopfii. PMID:30899253
MorCVD: A Unified Database for Host-Pathogen Protein-Protein Interactions of Cardiovascular Diseases Related to Microbes. PMID:30858555
A linear nonribosomal octapeptide from Fusarium graminearum facilitates cell-to-cell invasion of wheat. PMID:30804501
Co-outbreak of multidrug resistance and a novel ST3006 Klebsiella pneumoniae in a neonatal intensive care unit: A retrospective study. PMID:30681632
Powdery Mildews Are Characterized by Contracted Carbohydrate Metabolism and Diverse Effectors to Adapt to Obligate Biotrophic Lifestyle. PMID:30619222
Interface-Based Structural Prediction of Novel Host-Pathogen Interactions. PMID:30298406
Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus. PMID:30285612
Genome analysis of the ubiquitous boxwood pathogen Pseudonectria foliicola. PMID:30155349
Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora. PMID:30060094
Comprehensive analysis of Verticillium nonalfalfae in silico secretome uncovers putative effector proteins expressed during hop invasion. PMID:29894496
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. PMID:29688354
Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum. PMID:29673315
Characterization of Heterobasidion occidentale transcriptomes reveals candidate genes and DNA polymorphisms for virulence variations. PMID:29611344
Integrative Approaches to Understand the Mastery in Manipulation of Host Cytokine Networks by Protozoan Parasites with Emphasis on Plasmodium and Leishmania Species. PMID:29527208
Genome mining of Streptomyces scabrisporus NF3 reveals symbiotic features including genes related to plant interactions. PMID:29447216
Genome and secretome analysis of Pochonia chlamydosporia provide new insight into egg-parasitic mechanisms. PMID:29348510
Secretome Characterization and Correlation Analysis Reveal Putative Pathogenicity Mechanisms and Identify Candidate Avirulence Genes in the Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici. PMID:29312156
Structural host-microbiota interaction networks. PMID:29023448
Genome sequencing and comparative genomics reveal a repertoire of putative pathogenicity genes in chilli anthracnose fungus Colletotrichum truncatum. PMID:28846714
A plant pathology perspective of fungal genome sequencing. PMID:28824836
Comparative Genome Analysis of Rathayibacter tritici NCPPB 1953 with Rathayibacter toxicus Strains Can Facilitate Studies on Mechanisms of Nematode Association and Host Infection. PMID:28811754
Aspergillus Secondary Metabolite Database, a resource to understand the Secondary metabolome of Aspergillus genus. PMID:28779078
Draft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence. PMID:28706242
A TALE-inspired computational screen for proteins that contain approximate tandem repeats. PMID:28617832
Limitations of a metabolic network-based reverse ecology method for inferring host-pathogen interactions. PMID:28545448
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.). PMID:28486484
A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection. PMID:28466509
Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range. PMID:28464870
Genomics and Comparative Genomic Analyses Provide Insight into the Taxonomy and Pathogenic Potential of Novel Emmonsia Pathogens. PMID:28409126
PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions. PMID:28365721
Characterization of the Two-Speed Subgenomes of Fusarium graminearum Reveals the Fast-Speed Subgenome Specialized for Adaption and Infection. PMID:28261228
Genome Sequence of a Unique Magnaporthe oryzae RMg-Dl Isolate from India That Causes Blast Disease in Diverse Cereal Crops, Obtained Using PacBio Single-Molecule and Illumina HiSeq2500 Sequencing. PMID:28209817
Draft genome sequence of Karnal bunt pathogen (Tilletia indica) of wheat provides insights into the pathogenic mechanisms of quarantined fungus. PMID:28152050
Genome Analysis of a Zygomycete Fungus Choanephora cucurbitarum Elucidates Necrotrophic Features Including Bacterial Genes Related to Plant Colonization. PMID:28091548
A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola. PMID:28073340
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database. PMID:27915230
Genome Sequencing and Comparative Genomics Analysis Revealed Pathogenic Potential in Penicillium capsulatum as a Novel Fungal Pathogen Belonging to Eurotiales. PMID:27761131
Plant Microbe Interactions in Post Genomic Era: Perspectives and Applications. PMID:27725809
DenHunt - A Comprehensive Database of the Intricate Network of Dengue-Human Interactions. PMID:27618709
The genome of the emerging barley pathogen Ramularia collo-cygni. PMID:27506390
Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base. PMID:27433158
Biosynthesis of Antibiotic Leucinostatins in Bio-control Fungus Purpureocillium lilacinum and Their Inhibition on Phytophthora Revealed by Genome Mining. PMID:27416025
Comprehensive analysis of microRNA-Seq and target mRNAs of rice sheath blight pathogen provides new insights into pathogenic regulatory mechanisms. PMID:27374612
HPIDB 2.0: a curated database for host-pathogen interactions. PMID:27374121
Divergent and Convergent Evolution of Fungal Pathogenicity. PMID:27071652
Kingdom-Wide Analysis of Fungal Small Secreted Proteins (SSPs) Reveals their Potential Role in Host Association. PMID:26925088
Computational Prediction of Effector Proteins in Fungi: Opportunities and Challenges. PMID:26904083
Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics. PMID:26840125
Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors. PMID:26779196
The Draft Genome Sequence of Xanthomonas sp. Strain Mitacek01 Expands the Pangenome of a Genus of Plant Pathogens. PMID:26659686
Draft Genome Sequences of Two Isolates of the Plant-Pathogenic Fungus Neonectria ditissima That Differ in Virulence. PMID:26586888
Ensembl Genomes 2016: more genomes, more complexity. PMID:26578574
SugarBindDB, a resource of glycan-mediated host-pathogen interactions. PMID:26578555
PhytoPath: an integrative resource for plant pathogen genomics. PMID:26476449
The trans-kingdom identification of negative regulators of pathogen hypervirulence. PMID:26468211
Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence. PMID:26300902
Computational analysis of protein interaction networks for infectious diseases. PMID:26261187
The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. PMID:26198851
Genome-Wide Analysis of Simple Sequence Repeats and Efficient Development of Polymorphic SSR Markers Based on Whole Genome Re-Sequencing of Multiple Isolates of the Wheat Stripe Rust Fungus. PMID:26068192
A review on computational systems biology of pathogen-host interactions. PMID:25914674
Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions. PMID:25881124 -
PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database
PubMed citations: 91.
91 articles citing: PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database
A Secondary Metabolism Pathway Involved in the Production of a Putative Toxin Is Expressed at Early Stage of Monilinia laxa Infection. PMID:35401637
Genome Assembly and Genome Annotation of Leishmania martiniquensis Isolated from a Leishmaniasis Patient in Thailand. PMID:35371566
Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence. PMID:35283890
Genomic Analyses of the Fungus Paraconiothyrium sp. Isolated from the Chinese White Wax Scale Insect Reveals Its Symbiotic Character. PMID:35205383
Insights into the Host-Pathogen Interaction Pathways through RNA-Seq Analysis of Lens culinaris Medik. in Response to Rhizoctonia bataticola Infection. PMID:35052429
The Integrative and Conjugative Element ICECspPOL2 Contributes to the Outbreak of Multi-Antibiotic-Resistant Bacteria for Chryseobacterium Spp. and Elizabethkingia Spp. PMID:34937181
Functional Genomics and Comparative Lineage-Specific Region Analyses Reveal Novel Insights into Race Divergence in Verticillium dahliae. PMID:34937170
Infection Process and Genome Assembly Provide Insights into the Pathogenic Mechanism of Destructive Mycoparasite Calcarisporium cordycipiticola with Host Specificity. PMID:34829206
PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions. PMID:34788826
Leveraging Experimental Strategies to Capture Different Dimensions of Microbial Interactions. PMID:34646243
Deciphering the Dynamics of Signaling Cascades and Virulence Factors of B. cinerea during Tomato Cell Wall Degradation. PMID:34576732
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions. PMID:34549988
Whole genome sequences of two Trichophyton indotineae clinical isolates from India emerging as threats during therapeutic treatment of dermatophytosis. PMID:34458064
Functional validation of pathogenicity genes in rice sheath blight pathogen Rhizoctonia solani by a novel host-induced gene silencing system. PMID:34453407
Gene Validation and Remodelling Using Proteogenomics of Phytophthora cinnamomi, the Causal Agent of Dieback. PMID:34394023
Comparative analysis of draft genome assemblies developed from whole genome sequences of two Hyaloperonospora brassicae isolate samples differing in field virulence on Brassica napus. PMID:34258242
Dynamics of Verticillium dahliae race 1 population under managed agricultural ecosystems. PMID:34172070
Analysis of Genetic Diversity and Antibiotic Options for Clinical Listeria monocytogenes Infections in China. PMID:34159214
Quantitative interactions: the disease outcome of Botrytis cinerea across the plant kingdom. PMID:34003931
A first insight into the genome of Prototheca wickerhamii, a major causative agent of human protothecosis. PMID:33750287
Convergent Adaptation to Quantitative Host Resistance in a Major Plant Pathogen. PMID:33622734
The Genome of Banana Leaf Blight Pathogen Fusarium sacchari str. FS66 Harbors Widespread Gene Transfer From Fusarium oxysporum. PMID:33613610
Genome Sequencing Analysis of Scleromitrula shiraiana, a Causal Agent of Mulberry Sclerotial Disease With Narrow Host Range. PMID:33519746
Comparative RNA-Seq analysis unfolds a complex regulatory network imparting yellow mosaic disease resistance in mungbean [Vigna radiata (L.) R. Wilczek]. PMID:33434234
Comparative genomics of Klebsiella michiganensis BD177 and related members of Klebsiella sp. reveal the symbiotic relationship with Bactrocera dorsalis. PMID:33339499
Vm-milR37 contributes to pathogenicity by regulating glutathione peroxidase gene VmGP in Valsa mali. PMID:33278058
Cyanobacterial blooms contribute to the diversity of antibiotic-resistance genes in aquatic ecosystems. PMID:33277584
The sino-nasal warzone: transcriptomic and genomic studies on sino-nasal aspergillosis in dogs. PMID:33184275
Draft genome assembly of Passalora sequoiae a needle blight pathogen on Leyland cypress. PMID:33148306
Whole genome analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) and the development of molecular tools for early detection and monitoring. PMID:33148175
gcType: a high-quality type strain genome database for microbial phylogenetic and functional research. PMID:33119759
Genome Sequencing of Paecilomyces Penicillatus Provides Insights into Its Phylogenetic Placement and Mycoparasitism Mechanisms on Morel Mushrooms. PMID:33065983
Understanding Host-Pathogen Interactions in Brassica napus in the Omics Era. PMID:33050509
Defects in the Ferroxidase That Participates in the Reductive Iron Assimilation System Results in Hypervirulence in Botrytis Cinerea. PMID:32753496
Potential evolutionary impact of integrative and conjugative elements (ICEs) and genomic islands in the Ralstonia solanacearum species complex. PMID:32719415
Genomic Analysis of Diverse Members of the Fungal Genus Monosporascus Reveals Novel Lineages, Unique Genome Content and a Potential Bacterial Associate. PMID:32580939
Genomic and transcriptomic survey of an endophytic fungus Calcarisporium arbuscula NRRL 3705 and potential overview of its secondary metabolites. PMID:32580753
Pathogens Shape Sex Differences in Mammalian Aging. PMID:32540194
Genome mining of the citrus pathogen Elsinoë fawcettii; prediction and prioritisation of candidate effectors, cell wall degrading enzymes and secondary metabolite gene clusters. PMID:32469865
Transposable elements contribute to the genome plasticity of Ralstonia solanacearum species complex. PMID:32379020
EffHunter: A Tool for Prediction of Effector Protein Candidates in Fungal Proteomic Databases. PMID:32375409
Comparative Genomic and Proteomic Analyses of Three Widespread Phytophthora Species: Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae. PMID:32365808
Genetic Underpinnings of Host Manipulation by Ophiocordyceps as Revealed by Comparative Transcriptomics. PMID:32354705
Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants. PMID:32265851
Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions. PMID:32251355
Genomic Features of Cladobotryum dendroides, Which Causes Cobweb Disease in Edible Mushrooms, and Identification of Genes Related to Pathogenicity and Mycoparasitism. PMID:32245129
Shifts in microbial community, pathogenicity-related genes and antibiotic resistance genes during dairy manure piled up. PMID:32202696
Transcript profiling reveals potential regulators for oxidative stress response of a necrotrophic chickpea pathogen Ascochyta rabiei. PMID:32117678
Whole Genome Enabled Phylogenetic and Secretome Analyses of Two Venturia nashicola Isolates. PMID:32089665
A Bipartite Network Module-Based Project to Predict Pathogen-Host Association. PMID:32038713
Whole-genome and time-course dual RNA-Seq analyses reveal chronic pathogenicity-related gene dynamics in the ginseng rusty root rot pathogen Ilyonectria robusta. PMID:32005849
Using Omics Technologies and Systems Biology to Identify Epitope Targets for the Development of Monoclonal Antibodies Against Antibiotic-Resistant Bacteria. PMID:31921119
The transcriptome of Pinus pinaster under Fusarium circinatum challenge. PMID:31914917
Transcriptome analysis of the fungal pathogen Rosellinia necatrix during infection of a susceptible avocado rootstock identifies potential mechanisms of pathogenesis. PMID:31878883
Integrative transcriptome analysis discloses the molecular basis of a heterogeneous fungal phytopathogen complex, Rhizoctonia solani AG-1 subgroups. PMID:31873088
PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets. PMID:31866958
Global Screening of Genomic and Transcriptomic Factors Associated with Phenotype Differences between Multidrug-Resistant and -Susceptible Candida haemulonii Strains. PMID:31848301
PHI-base: the pathogen-host interactions database. PMID:31733065
A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat. PMID:31685928
Microevolution within ST11 group Clostridioides difficile isolates through mobile genetic elements based on complete genome sequencing. PMID:31666016
Ensembl Genomes 2020-enabling non-vertebrate genomic research. PMID:31598706
Genome-Wide Signatures of Selection in Colletotrichum kahawae Reveal Candidate Genes Potentially Involved in Pathogenicity and Aggressiveness. PMID:31275287
The cell wall proteome from two strains of Pseudocercospora fijiensis with differences in virulence. PMID:31267317
Integrated transcriptomic and secretomic approaches reveal critical pathogenicity factors in Pseudofabraea citricarpa inciting citrus target spot. PMID:31162831
Recent trends in molecular diagnostics of yeast infections: from PCR to NGS. PMID:31158289
Cyberbiosecurity Challenges of Pathogen Genome Databases. PMID:31157218
Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti. PMID:31150449
Genome Analysis of Hypomyces perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus bisporus). PMID:31146507
Genome analysis provides insight about pathogenesis of Indian strains of Rhizoctonia solani in rice. PMID:31102065
Infection Strategies Deployed by Botrytis cinerea, Fusarium acuminatum, and Rhizopus stolonifer as a Function of Tomato Fruit Ripening Stage. PMID:30881367
Coagulase-Negative Staphylococci Pathogenomics. PMID:30862021
Genome Sequencing of Cladobotryum protrusum Provides Insights into the Evolution and Pathogenic Mechanisms of the Cobweb Disease Pathogen on Cultivated Mushroom. PMID:30744046
Genomic Insights into the Rice Blast Fungus through Estimation of Gene Emergence Time in Phylogenetic Context. PMID:30637144
Powdery Mildews Are Characterized by Contracted Carbohydrate Metabolism and Diverse Effectors to Adapt to Obligate Biotrophic Lifestyle. PMID:30619222
Comparative genomic analysis revealed rapid differentiation in the pathogenicity-related gene repertoires between Pyricularia oryzae and Pyricularia penniseti isolated from a Pennisetum grass. PMID:30545292
Victors: a web-based knowledge base of virulence factors in human and animal pathogens. PMID:30365026
Breast cancer in postmenopausal women is associated with an altered gut metagenome. PMID:30081953
Comparative Genomics Reveals the Core Gene Toolbox for the Fungus-Insect Symbiosis. PMID:29764946
Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum. PMID:29673315
The Interactomic Analysis Reveals Pathogenic Protein Networks in Phomopsis longicolla Underlying Seed Decay of Soybean. PMID:29666630
Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors. PMID:29580224
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0. PMID:29569316
Polyketide synthases of Diaporthe helianthi and involvement of DhPKS1 in virulence on sunflower. PMID:29306326
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. PMID:29092050
Evolutionary Analysis of Pectin Lyases of the Genus Colletotrichum. PMID:29071357
A review of wheat diseases-a field perspective. PMID:29045052
Genome sequencing and comparative genomics reveal the potential pathogenic mechanism of Cercospora sojina Hara on soybean. PMID:28985305
Omics data reveal the unusual asexual-fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae. PMID:28854898
Transcriptional Analysis Allows Genome Reannotation and Reveals that Cryptococcus gattii VGII Undergoes Nutrient Restriction during Infection. PMID:28832534
Characterization of the Rosellinia necatrix Transcriptome and Genes Related to Pathogenesis by Single-Molecule mRNA Sequencing. PMID:28811753
Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes. PMID:28609292 -
PHI-base update: additions to the pathogen host interaction database
PubMed citations: 83.
83 articles citing: PHI-base update: additions to the pathogen host interaction database
Comparative Whole-Genome Sequence Analyses of Fusarium Wilt Pathogen (Foc R1, STR4 and TR4) Infecting Cavendish (AAA) Bananas in India, with a Special Emphasis on Pathogenicity Mechanisms. PMID:34575755
Analysis of saponins detoxification genes in Ilyonectria mors-panacis G3B inducing root rot of Panax notoginseng by RNA-Seq. PMID:34350471
Large-Scale Genome Scanning within Exonic Regions Revealed the Contributions of Selective Sweep Prone Genes to Host Divergence and Adaptation in Magnaporthe oryzae Species Complex. PMID:33803140
Biodegradation of lignin monomers and bioconversion of ferulic acid to vanillic acid by Paraburkholderia aromaticivorans AR20-38 isolated from Alpine forest soil. PMID:33687503
Systems Biology Approaches for Therapeutics Development Against COVID-19. PMID:33194800
Genome-scale analyses and characteristics of putative pathogenicity genes of Stagonosporopsis cucurbitacearum, a pumpkin gummy stem blight fungus. PMID:33093634
Meiotic recombination in the offspring of Microbotryum hybrids and its impact on pathogenicity. PMID:32942986
Whole-Genome Sequencing and Bioinformatics Analysis of Apiotrichum mycotoxinivorans: Predicting Putative Zearalenone-Degradation Enzymes. PMID:32849454
Draft Genome Sequence of the Bacterium Paraburkholderia aromaticivorans AR20-38, a Gram-Negative, Cold-Adapted Degrader of Aromatic Compounds. PMID:32616634
Expansion of Adhesion Genes Drives Pathogenic Adaptation of Nematode-Trapping Fungi. PMID:32339992
Sequencing and Functional Annotation of the Whole Genome of Shiraia bambusicola. PMID:31712259
Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host. PMID:31277573
The pathogenic mechanisms of Tilletia horrida as revealed by comparative and functional genomics. PMID:30337609
Genome analysis of the ubiquitous boxwood pathogen Pseudonectria foliicola. PMID:30155349
Comparative genomics reveals cotton-specific virulence factors in flexible genomic regions in Verticillium dahliae and evidence of horizontal gene transfer from Fusarium. PMID:29084346
Comparative Genomics of Sibling Species of Fonsecaea Associated with Human Chromoblastomycosis. PMID:29062304
Comparative whole-genome analysis reveals artificial selection effects on Ustilago esculenta genome. PMID:28992048
A draft genome sequence of the rose black spot fungus Diplocarpon rosae reveals a high degree of genome duplication. PMID:28981525
Alternaria Toxins: Potential Virulence Factors and Genes Related to Pathogenesis. PMID:28848500
Verticillium dahliae transcription factor VdFTF1 regulates the expression of multiple secreted virulence factors and is required for full virulence in cotton. PMID:28520093
From yeast to hypha: defining transcriptomic signatures of the morphological switch in the dimorphic fungal pathogen Ophiostoma novo-ulmi. PMID:27846799
Characterization of the Verticillium dahliae Exoproteome Involves in Pathogenicity from Cotton-Containing Medium. PMID:27840627
The Transcriptome of Exophiala dermatitidis during Ex-vivo Skin Model Infection. PMID:27822460
Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors. PMID:27809762
Plant Microbe Interactions in Post Genomic Era: Perspectives and Applications. PMID:27725809
Sequencing and functional annotation of the whole genome of the filamentous fungus Aspergillus westerdijkiae. PMID:27527502
A review on host-pathogen interactions: classification and prediction. PMID:27470504
Deciphering the transcriptomic response of Fusarium verticillioides in relation to nitrogen availability and the development of sugarcane pokkah boeng disease. PMID:27434999
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes. PMID:27153332
De novo genome assembly and annotation of rice sheath rot fungus Sarocladium oryzae reveals genes involved in Helvolic acid and Cerulenin biosynthesis pathways. PMID:27036298
RSIADB, a collective resource for genome and transcriptome analyses in Rhizoctonia solani AG1 IA. PMID:27022158
Rhamnose synthase activity is required for pathogenicity of the vascular wilt fungus Verticillium dahliae. PMID:26996832
Insights into Adaptations to a Near-Obligate Nematode Endoparasitic Lifestyle from the Finished Genome of Drechmeria coniospora. PMID:26975455
Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors. PMID:26945779
Computational Prediction of Effector Proteins in Fungi: Opportunities and Challenges. PMID:26904083
Genome analysis of Daldinia eschscholtzii strains UM 1400 and UM 1020, wood-decaying fungi isolated from human hosts. PMID:26581579
Genome analysis of rice-blast fungus Magnaporthe oryzae field isolates from southern India. PMID:26484270
RNAseq Analysis Highlights Specific Transcriptome Signatures of Yeast and Mycelial Growth Phases in the Dutch Elm Disease Fungus Ophiostoma novo-ulmi. PMID:26384770
Transcriptome analysis of the white pine blister rust pathogen Cronartium ribicola: de novo assembly, expression profiling, and identification of candidate effectors. PMID:26338692
Integrated inference and evaluation of host-fungi interaction networks. PMID:26300851
Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens. PMID:26084502
Genome-Wide Analysis of Simple Sequence Repeats and Efficient Development of Polymorphic SSR Markers Based on Whole Genome Re-Sequencing of Multiple Isolates of the Wheat Stripe Rust Fungus. PMID:26068192
Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane. PMID:26065709
Conservation and divergence of the cyclic adenosine monophosphate-protein kinase A (cAMP-PKA) pathway in two plant-pathogenic fungi: Fusarium graminearum and F. verticillioides. PMID:25907134
The Alternaria genomes database: a comprehensive resource for a fungal genus comprised of saprophytes, plant pathogens, and allergenic species. PMID:25887485
Identification of horizontally transferred genes in the genus Colletotrichum reveals a steady tempo of bacterial to fungal gene transfer. PMID:25555398
Functional annotation of the Ophiostoma novo-ulmi genome: insights into the phytopathogenicity of the fungal agent of Dutch elm disease. PMID:25539722
The Pathogen-Host Interactions database (PHI-base): additions and future developments. PMID:25414340
Genome sequencing of Sporisorium scitamineum provides insights into the pathogenic mechanisms of sugarcane smut. PMID:25406499
Interspecific and host-related gene expression patterns in nematode-trapping fungi. PMID:25384908
Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation. PMID:25368161
Comparative genome analysis of entomopathogenic fungi reveals a complex set of secreted proteins. PMID:25263348
The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species. PMID:25102932
Genome and transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. cubense causing banana vascular wilt disease. PMID:24743270
De novo genome assembly of the fungal plant pathogen Pyrenophora semeniperda. PMID:24475219
The genome sequence of the fungal pathogen Fusarium virguliforme that causes sudden death syndrome in soybean. PMID:24454689
Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining. PMID:24204279
Ensembl Genomes 2013: scaling up access to genome-wide data. PMID:24163254
HoPaCI-DB: host-Pseudomonas and Coxiella interaction database. PMID:24137008
Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PMID:23861834
Multitask learning for host-pathogen protein interactions. PMID:23812987
Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum. PMID:23770896
Functional and evolutionary analysis of the genome of an obligate fungal symbiont. PMID:23563967
Systems biology of pathogen-host interaction: networks of protein-protein interaction within pathogens and pathogen-human interactions in the post-genomic era. PMID:23193100
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus. PMID:23171342
Exploitation of genomics in fungicide research: current status and future perspectives. PMID:23157348
Large scale expressed sequence tag (EST) analysis of Metarhizium acridum infecting Locusta migratoria reveals multiple strategies for fungal adaptation to the host cuticle. PMID:23052419
Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina. PMID:22992219
A comparison of computational methods for identifying virulence factors. PMID:22880014
Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution. PMID:22876864
Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space. PMID:22750305
Prediction and comparison of Salmonella-human and Salmonella-Arabidopsis interactomes. PMID:22589098
Association of single nucleotide polymorphic sites in candidate genes with aggressiveness and deoxynivalenol production in Fusarium graminearum causing wheat head blight. PMID:22409447
The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes. PMID:22120664
OmniMapFree: a unified tool to visualise and explore sequenced genomes. PMID:22085540
454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction. PMID:21726390
Integration and visualization of host-pathogen data related to infectious diseases. PMID:21712250
Fungal pathogenicity genes in the age of 'omics'. PMID:21535355
Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum. PMID:21253567
BiologicalNetworks--tools enabling the integration of multi-scale data for the host-pathogen studies. PMID:21235794
HPIDB--a unified resource for host-pathogen interactions. PMID:20946599
Combining ChIP-chip and expression profiling to model the MoCRZ1 mediated circuit for Ca/calcineurin signaling in the rice blast fungus. PMID:20502632
Expressed sequence tags from the flower pathogen Claviceps purpurea. PMID:19694956 - http://dx.doi.org/10.1093/nar/gku1165
Tags:
Tags
More detailed information about this field from each metasource.
biocuration
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
disease
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
disease phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene-disease association
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
host
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
literature curation
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
microbe-host interaction phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
mutation
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
pathogen
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
virulence
metasource: Fairsharing.org
version: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general genomics databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
amino acid sequence
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
bacteria
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
fungi
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
human pathogenic
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
nucleotide
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
oomycetes
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
plant pathogenic
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
protein
metasource: re3data.org
version: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
genetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:15.242488
Tags
More detailed information about this field from each metasource.
biocuration
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
disease
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
disease phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene-disease association
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
host
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
literature curation
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
microbe-host interaction phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
mutation
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
pathogen
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
virulence
metasource: Fairsharing.orgversion: FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general genomics databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
amino acid sequence
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
bacteria
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
fungi
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
human pathogenic
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
nucleotide
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
oomycetes
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
plant pathogenic
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
protein
metasource: re3data.orgversion: re3data.org: PHI-base; editing status 2017-05-29; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP69 last accessed: 2022-11-04
pathology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:15.242488
genetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:15.242488
biocuration disease disease phenotype gene gene-disease association host literature curation microbe-host interaction phenotype mutation pathogen phenotype virulence genomics general genomics amino acid sequence bacteria fungi human pathogenic nucleotide oomycetes plant pathogenic protein pathology genetics
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