lncRNAdb

Names
More detailed information about this field from each metasource.

lncRNAdb
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826

lncrnadb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826

Other names: lncrnadb

This source may no longer be available. No known URL could be resolved successfully.

Long Non-Coding RNA Database

Webpage:

http://www.lncrnadb.org

Publications:

Publications
More detailed information about this field from each metasource.

lncRNAdb: a reference database for long noncoding RNAs
PMID: 21112873
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826

http://dx.doi.org/10.1093/nar/gku988
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

lncRNAdb: a reference database for long noncoding RNAs PubMed citations: 291.

291 articles citing: lncRNAdb: a reference database for long noncoding RNAs

Long Non-Coding RNAs, Novel Offenders or Guardians in Multiple Sclerosis: A Scoping Review. PMID:34950142
LINC00857 promotes colorectal cancer progression by sponging miR-150-5p and upregulating HMGB3 (high mobility group box 3) expression. PMID:34753396
(In)Distinctive Role of Long Non-Coding RNAs in Common and Rare Ovarian Cancers. PMID:34680193
lncExplore: a database of pan-cancer analysis and systematic functional annotation for lncRNAs from RNA-sequencing data. PMID:34464437
Integrated Analysis of lncRNA and mRNA in Subcutaneous Adipose Tissue of Ningxiang Pig. PMID:34439958
Long Non-coding RNA Expression Profiling Using Arraystar LncRNA Microarrays. PMID:34417743
Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748
Clinicopathological and prognostic significance of long non-coding RNA-ROR in cancer patients: A systematic review and meta-analysis. PMID:34232190
Emerging Role of MicroRNA-200 Family in Dentistry. PMID:34208375
A machine learning framework that integrates multi-omics data predicts cancer-related LncRNAs. PMID:34134612
The pleiotropic roles of circular and long noncoding RNAs in cutaneous melanoma. PMID:34080276
Decoding LncRNAs. PMID:34072257
Long Non-Coding RNAs in Insects. PMID:33919662
Down-Regulation of TMPO-AS1 Induces Apoptosis in Lung Carcinoma Cells by Regulating miR-143-3p/CDK1 Axis. PMID:33685293
RWSF-BLP: a novel lncRNA-disease association prediction model using random walk-based multi-similarity fusion and bidirectional label propagation. PMID:33590345
The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis. PMID:33339309
GAS5 regulates diabetic cardiomyopathy via miR‑221‑3p/p27 axis‑associated autophagy. PMID:33313941
A novel computational model for predicting potential LncRNA-disease associations based on both direct and indirect features of LncRNA-disease pairs. PMID:33267800
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. PMID:33221906
lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA. PMID:33020484
Dual Effects of Non-Coding RNAs (ncRNAs) in Cancer Stem Cell Biology. PMID:32932969
SNPs in lncRNA Regions and Breast Cancer Risk. PMID:32714364
The regulatory role of miR-107 in Coxsackie B3 virus replication. PMID:32674073
Cell-free long non-coding RNAs (LY86-AS1 & HCG27_201and GAS5) as biomarkers for pre-diabetes and type 2 DM in Egypt. PMID:32514472
Long noncoding RNAs and their link to cancer. PMID:32490292
Online Databases and Non-coding RNAs in Cardiovascular Diseases. PMID:32285405
Long noncoding RNAs: new insights in modulating mammalian spermatogenesis. PMID:32128162
Epigenetic Signaling and RNA Regulation in Cardiovascular Diseases. PMID:31941147
Role of microRNA and Long Non-Coding RNA in Hepatocellular Carcinoma. PMID:31939724
Research progress on the interactions between long non-coding RNAs and microRNAs in human cancer. PMID:31897175
Revealing stage-specific expression patterns of long noncoding RNAs along mouse spermatogenesis. PMID:31869276
Comparing biological information contained in mRNA and non-coding RNAs for classification of lung cancer patients. PMID:31796020
Insights into the Functions of LncRNAs in Drosophila. PMID:31546813
A Learning-Based Method for LncRNA-Disease Association Identification Combing Similarity Information and Rotation Forest. PMID:31494494
Long Noncoding Transcriptome in Chronic Obstructive Pulmonary Disease. PMID:31486667
Long Non-Coding RNA in the Pathogenesis of Cancers. PMID:31480503
Expression Profile and Function Analysis of Long Non-coding RNAs in the Infection of Coxsackievirus B3. PMID:31388922
An expanded landscape of human long noncoding RNA. PMID:31350901
The Dark That Matters: Long Non-coding RNAs as Master Regulators of Cellular Metabolism in Non-communicable Diseases. PMID:31191327
Functional impacts of non-coding RNA processing on enhancer activity and target gene expression. PMID:31169884
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis. PMID:31142264
Long noncoding RNAs: Novel regulators of virus-host interactions. PMID:31016795
Long noncoding RNA expression profile and functional analysis in psoriasis. PMID:30816535
Molecular Network-Based Drug Prediction in Thyroid Cancer. PMID:30641858
Invited Review: Long non-coding RNAs: important regulators in the development, function and disorders of the central nervous system. PMID:30636336
Research progresses in roles of LncRNA and its relationships with breast cancer. PMID:30459529
Detection of long non-coding RNA homology, a comparative study on alignment and alignment-free metrics. PMID:30400819
Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing. PMID:30397543
Arena-Idb: a platform to build human non-coding RNA interaction networks. PMID:30367585
LncRNA BLAT1 is Upregulated in Basal-like Breast Cancer through Epigenetic Modifications. PMID:30349062
Role of flow-sensitive microRNAs and long noncoding RNAs in vascular dysfunction and atherosclerosis. PMID:30300747
lncSLdb: a resource for long non-coding RNA subcellular localization. PMID:30219837
A Long Noncoding RNA Regulates Hepatitis C Virus Infection Through Interferon Alpha-Inducible Protein 6. PMID:30199576
Long non-coding RNAs in the failing heart and vasculature. PMID:30175285
The State of Long Non-Coding RNA Biology. PMID:30103474
Non-coding RNAs: the riddle of the transcriptome and their perspectives in cancer. PMID:30069443
A Novel Approach for Predicting Disease-lncRNA Associations Based on the Distance Correlation Set and Information of the miRNAs. PMID:30046354
The emergence of long non-coding RNAs in hepatocellular carcinoma: an update. PMID:30026854
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
lincROR influences the stemness and crizotinib resistance in EML-ALK+ non-small-cell lung cancer cells. PMID:29950868
Platforms for Investigating LncRNA Functions. PMID:29945466
Islet Long Noncoding RNAs: A Playbook for Discovery and Characterization. PMID:29937433
Expression of long noncoding RNA MALAT1 correlates with increased levels of Nischarin and inhibits oncogenic cell functions in breast cancer. PMID:29912916
The effects of aberrant expression of LncRNA DGCR5/miR-873-5p/TUSC3 in lung cancer cell progression. PMID:29790668
MALAT1: a druggable long non-coding RNA for targeted anti-cancer approaches. PMID:29739426
Analysis of long non-coding RNA (lncRNA) expression in hepatitis B patients. PMID:29669510
Long non‑coding RNA BC168687 small interfering RNA reduces high glucose and high free fatty acid‑induced expression of P2X7 receptors in satellite glial cells. PMID:29436679
An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells. PMID:29436261
Using RNA Sequence and Structure for the Prediction of Riboswitch Aptamer: A Comprehensive Review of Available Software and Tools. PMID:29403526
TPGLDA: Novel prediction of associations between lncRNAs and diseases via lncRNA-disease-gene tripartite graph. PMID:29348552
When Long Noncoding RNAs Meet Genome Editing in Pluripotent Stem Cells. PMID:29333164
Statistical analysis of non-coding RNA data. PMID:29306017
Natural Antisense Transcripts: Molecular Mechanisms and Implications in Breast Cancers. PMID:29301303
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
decodeRNA- predicting non-coding RNA functions using guilt-by-association. PMID:29220434
Long non-coding RNAs in Colorectal Cancer: Progression and Future Directions. PMID:29158793
Identifying Novel Glioma-Associated Noncoding RNAs by Their Expression Profiles. PMID:29138748
Epigenome alterations in aortic valve stenosis and its related left ventricular hypertrophy. PMID:29026447
Global network random walk for predicting potential human lncRNA-disease associations. PMID:28963512
BRWLDA: bi-random walks for predicting lncRNA-disease associations. PMID:28947982
Exosomal lncRNA GAS5 regulates the apoptosis of macrophages and vascular endothelial cells in atherosclerosis. PMID:28945793
Long non-coding RNAs may serve as biomarkers in breast cancer combined with primary lung cancer. PMID:28938549
Emerging mechanisms of long noncoding RNA function during normal and malignant hematopoiesis. PMID:28928124
The Function and Therapeutic Potential of Long Non-coding RNAs in Cardiovascular Development and Disease. PMID:28918050
Short and Long Noncoding RNAs Regulate the Epigenetic Status of Cells. PMID:28847161
Regulation of Peripheral Myelination through Transcriptional Buffering of Egr2 by an Antisense Long Non-coding RNA. PMID:28834756
The yeast noncoding RNA interaction network. PMID:28701522
Long Noncoding RNAs as Biomarkers in Cancer. PMID:28634418
Computational prediction of lncRNA-mRNA interactionsby integrating tissue specificity in human transcriptome. PMID:28595592
lncRNA-screen: an interactive platform for computationally screening long non-coding RNAs in large genomics datasets. PMID:28583068
Quantitative analysis of cryptic splicing associated with TDP-43 depletion. PMID:28549443
Mining Exosomal Genes for Pancreatic Cancer Targets. PMID:28446531
Long noncoding RNA ROR regulates chemoresistance in docetaxel-resistant lung adenocarcinoma cells via epithelial mesenchymal transition pathway. PMID:28388536
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604
LncRNAs: From Basic Research to Medical Application. PMID:28367094
In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression. PMID:28361701
Noncoding RNAs in protein clearance pathways: implications in neurodegenerative diseases. PMID:28360406
CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in cerebral organoids derived from iPS cells. PMID:28321286
Long Noncoding RNA CRNDE Promotes Multiple Myeloma Cell Growth by Suppressing miR-451. PMID:28276319
Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features. PMID:28128360
Colorectal Carcinoma: A General Overview and Future Perspectives in Colorectal Cancer. PMID:28106826
Primary Cell Culture of Live Neurosurgically Resected Aged Adult Human Brain Cells and Single Cell Transcriptomics. PMID:28099855
Neuroblastoma, a Paradigm for Big Data Science in Pediatric Oncology. PMID:28035989
Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs. PMID:27927715
Long Non-Coding RNAs: A Novel Paradigm for Toxicology. PMID:27864543
Microarray analysis reveals a potential role of LncRNAs expression in cardiac cell proliferation. PMID:27863467
Epigenetic inactivation of the p53-induced long noncoding RNA TP53 target 1 in human cancer. PMID:27821766
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay. PMID:27782208
lncScore: alignment-free identification of long noncoding RNA from assembled novel transcripts. PMID:27708423
Long non-coding RNAs regulate effects of β-crystallin B2 on mouse ovary development. PMID:27666820
A critical overview of long non-coding RNA in glioma etiology 2016: an update. PMID:27629290
IRWRLDA: improved random walk with restart for lncRNA-disease association prediction. PMID:27517318
Secondary structure impacts patterns of selection in human lncRNAs. PMID:27457204
Long non-coding RNAs and complex diseases: from experimental results to computational models. PMID:27345524
Conservation and tissue-specific transcription patterns of long noncoding RNAs. PMID:27335896
FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model. PMID:27322210
Long noncoding RNAs in prostate cancer: mechanisms and applications. PMID:27308347
Functional and prognostic significance of long non-coding RNA MALAT1 as a metastasis driver in ER negative lymph node negative breast cancer. PMID:27250026
Long non-coding RNA: Functional agent for disease traits. PMID:27229269
Up-regulation of long non-coding RNA PANDAR is associated with poor prognosis and promotes tumorigenesis in bladder cancer. PMID:27206339
Improved definition of the mouse transcriptome via targeted RNA sequencing. PMID:27197243
Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells. PMID:27090285
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
ILNCSIM: improved lncRNA functional similarity calculation model. PMID:27028993
Altered Long Noncoding RNA Expression Precedes the Course of Parkinson's Disease-a Preliminary Report. PMID:27021022
PRINS, a primate-specific long non-coding RNA, plays a role in the keratinocyte stress response and psoriasis pathogenesis. PMID:26935426
Identification and Functional Prediction of Large Intergenic Noncoding RNAs (lincRNAs) in Rainbow Trout (Oncorhynchus mykiss). PMID:26864089
Long-noncoding RNAs in basal cell carcinoma. PMID:26861560
Down regulated lncRNA MEG3 eliminates mycobacteria in macrophages via autophagy. PMID:26757825
Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination. PMID:26683846
Circulating long noncoding RNA GAS5 levels are correlated to prevalence of type 2 diabetes mellitus. PMID:26675493
lncRNAs regulate the innate immune response to viral infection. PMID:26667656
The domain structure and distribution of Alu elements in long noncoding RNAs and mRNAs. PMID:26654912
Homoiterons and expansion in ribosomal RNAs. PMID:26636029
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. PMID:26590255
KATZLDA: KATZ measure for the lncRNA-disease association prediction. PMID:26577439
A catalogue of novel bovine long noncoding RNA across 18 tissues. PMID:26496443
Novel insights into a treatment for aplastic anemia based on the advanced proliferation of bone marrow‑derived mesenchymal stem cells induced by fibroblast growth factor 1. PMID:26460236
Hepatic Long Intergenic Noncoding RNAs: High Promoter Conservation and Dynamic, Sex-Dependent Transcriptional Regulation by Growth Hormone. PMID:26459762
lncRScan-SVM: A Tool for Predicting Long Non-Coding RNAs Using Support Vector Machine. PMID:26437338
Generation of a de novo transcriptome from equine lamellar tissue. PMID:26432030
Linking RNA biology to lncRNAs. PMID:26430155
Satellite non-coding RNAs: the emerging players in cells, cellular pathways and cancer. PMID:26293605
Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA. PMID:26278472
Assessing Recent Selection and Functionality at Long Noncoding RNA Loci in the Mouse Genome. PMID:26272717
Epigenetics and Primary Biliary Cirrhosis: a Comprehensive Review and Implications for Autoimmunity. PMID:26267705
Long Non-Coding RNAs: The Key Players in Glioma Pathogenesis. PMID:26230711
Downregulation of the long noncoding RNA EGOT correlates with malignant status and poor prognosis in breast cancer. PMID:26159853
In silico discovery and modeling of non-coding RNA structure in viruses. PMID:26116541
Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity. PMID:26061969
Revealing protein-lncRNA interaction. PMID:26041786
Identification of diagnostic markers in colorectal cancer via integrative epigenomics and genomics data. PMID:25997610
The Novel Gene CRNDE Encodes a Nuclear Peptide (CRNDEP) Which Is Overexpressed in Highly Proliferating Tissues. PMID:25978564
Roles of lncRNA in breast cancer. PMID:25961689
Long non-coding RNAs and their biological roles in plants. PMID:25936895
Non coding RNAs in aortic aneurysmal disease. PMID:25883602
Combined inhibition of EGFR and c-ABL suppresses the growth of triple-negative breast cancer growth through inhibition of HOTAIR. PMID:25883211
The Landscape of long noncoding RNA classification. PMID:25869999
Epigenetic regulation in hepatocellular carcinoma requires long noncoding RNAs. PMID:25861629
Long noncoding RNAs in cardiac development and ageing. PMID:25855606
ALDB: a domestic-animal long noncoding RNA database. PMID:25853886
Low expression of lncRNA-GAS5 is implicated in human primary varicose great saphenous veins. PMID:25806802
Long Noncoding RNA-Directed Epigenetic Regulation of Gene Expression Is Associated With Anxiety-like Behavior in Mice. PMID:25792222
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing. PMID:25751143
Prognostic impact of HOTAIR expression is restricted to ER-negative breast cancers. PMID:25739705
The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins. PMID:25728138
Eukaryotic enhancers: common features, regulation, and participation in diseases. PMID:25715743
The landscape of long noncoding RNAs in the human transcriptome. PMID:25599403
RNAMotifScanX: a graph alignment approach for RNA structural motif identification. PMID:25595715
Identification of Stably Expressed lncRNAs as Valid Endogenous Controls for Profiling of Human Glioma. PMID:25561975
Comprehensive reconstruction and visualization of non-coding regulatory networks in human. PMID:25540777
Long non-coding RNA normalisers in human brain tissue. PMID:25528156
Investigation of serum lncRNA-uc003wbd and lncRNA-AF085935 expression profile in patients with hepatocellular carcinoma and HBV. PMID:25501706
From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease. PMID:25426780
The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer. PMID:25415230
LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression. PMID:25399422
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. PMID:25399417
Identification of candidate long noncoding RNAs associated with left ventricular hypertrophy. PMID:25382655
An update on LNCipedia: a database for annotated human lncRNA sequences. PMID:25378313
RNAcentral: an international database of ncRNA sequences. PMID:25352543
Analytical tools and current challenges in the modern era of neuroepigenomics. PMID:25349914
lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. PMID:25332394
lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. PMID:25332392
The parasite Trichomonas vaginalis expresses thousands of pseudogenes and long non-coding RNAs independently from functional neighbouring genes. PMID:25326207
Databases for lncRNAs: a comparative evaluation of emerging tools. PMID:25323317
ViRBase: a resource for virus-host ncRNA-associated interactions. PMID:25274736
Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes. PMID:25264628
Identification of a dinucleotide signature that discriminates coding from non-coding long RNAs. PMID:25250049
LncRBase: an enriched resource for lncRNA information. PMID:25233092
Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. PMID:25218058
Purifying selection on splice-related motifs, not expression level nor RNA folding, explains nearly all constraint on human lincRNAs. PMID:25158797
Complex interactions of transcription factors in mediating cytokine biology in T cells. PMID:25123282
Long non-coding RNAs in cancer: implications for personalized therapy. PMID:25113790
Functional implications of long non-coding RNAs in the pancreatic islets of Langerhans. PMID:25071836
Sex determination in annual fishes: Searching for the master sex-determining gene in Austrolebias charrua (Cyprinodontiformes, Rivulidae). PMID:25071401
Exploring the stability of long intergenic non-coding RNA in K562 cells by comparative studies of RNA-Seq datasets. PMID:24996425
A method for detecting long non-coding RNAs with tiled RNA expression microarrays. PMID:24937006
Identification of candidate long non-coding RNAs in response to myocardial infarction. PMID:24917243
Structured RNAs and synteny regions in the pig genome. PMID:24917120
Long Noncoding RNAs in Interaction With RNA Binding Proteins in Hepatocellular Carcinoma. PMID:24910706
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs. PMID:24850885
Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm. PMID:24771344
Species-specific alternative splicing leads to unique expression of sno-lncRNAs. PMID:24734784
Role of the lncRNA-p53 regulatory network in cancer. PMID:24721780
Targeted sequencing for gene discovery and quantification using RNA CaptureSeq. PMID:24705597
Missing links in cardiology: long non-coding RNAs enter the arena. PMID:24619481
Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia. PMID:24603890
Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs. PMID:24594072
AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource. PMID:24573881
Long noncoding RNAs in innate and adaptive immunity. PMID:24556411
Long non-coding RNA UCA1 promotes breast tumor growth by suppression of p27 (Kip1). PMID:24457952
Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals. PMID:24429298
Single molecule fluorescence approaches shed light on intracellular RNAs. PMID:24417544
A computational framework to infer human disease-associated long noncoding RNAs. PMID:24392133
Identification of expressed and conserved human noncoding RNAs. PMID:24344320
Long noncoding RNAs: fresh perspectives into the RNA world. PMID:24290031
NONCODEv4: exploring the world of long non-coding RNA genes. PMID:24285305
Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment. PMID:24240175
Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing. PMID:24225384
ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians. PMID:24225082
Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network. PMID:24129253
Computational prediction of associations between long non-coding RNAs and proteins. PMID:24063787
Long non-coding RNAs and complex human diseases. PMID:24036441
Identification and characterization of long non-coding RNAs related to mouse embryonic brain development from available transcriptomic data. PMID:23967161
Non-coding RNAs and cancer. PMID:23965974
Genistein inhibits prostate cancer cell growth by targeting miR-34a and oncogenic HOTAIR. PMID:23936419
Negative regulation of lncRNA GAS5 by miR-21. PMID:23933812
Detecting and comparing non-coding RNAs in the high-throughput era. PMID:23887659
lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. PMID:23846593
Long noncoding RNAs-related diseases, cancers, and drugs. PMID:23843741
HLA-G/C, miRNAs, and their role in HIV infection and replication. PMID:23841087
Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements. PMID:23815359
On the classification of long non-coding RNAs. PMID:23696037
Long non-coding RNAs (lncRNAs) and viral infections. PMID:23645970
LncRNA loc285194 is a p53-regulated tumor suppressor. PMID:23558749
Long noncoding RNA MALAT1 controls cell cycle progression by regulating the expression of oncogenic transcription factor B-MYB. PMID:23555285
Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples. PMID:23521802
PLncDB: plant long non-coding RNA database. PMID:23476021
The vast, conserved mammalian lincRNome. PMID:23468607
Structure and function of long noncoding RNAs in epigenetic regulation. PMID:23463315
A cell-penetrating peptide suppresses the hypoxia inducible factor-1 function by binding to the helix-loop-helix domain of the aryl hydrocarbon receptor nuclear translocator. PMID:23454269
Long non-coding RNA in cancer. PMID:23443164
Regulation of mRNA export by the PI3 kinase/AKT signal transduction pathway. PMID:23427269
Systematic transcriptome wide analysis of lncRNA-miRNA interactions. PMID:23405074
Hyper conserved elements in vertebrate mRNA 3'-UTRs reveal a translational network of RNA-binding proteins controlled by HuR. PMID:23376935
Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma. PMID:23333711
Molecular mechanisms and function prediction of long noncoding RNA. PMID:23319885
Imprinting and expression of Dio3os mirrors Dio3 in rat. PMID:23230449
LncRNADisease: a database for long-non-coding RNA-associated diseases. PMID:23175614
Polyadenylation-dependent control of long noncoding RNA expression by the poly(A)-binding protein nuclear 1. PMID:23166521
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. PMID:23161675
Gene expression in the human brain: the current state of the study of specificity and spatiotemporal dynamics. PMID:23145569
Strategies to identify long noncoding RNAs involved in gene regulation. PMID:23126680
Long noncoding RNAs as sinks in Prader-Willi syndrome. PMID:23102265
Evolutionary conservation and functional roles of ncRNA. PMID:23087702
Neurodegeneration as an RNA disorder. PMID:23063563
Age-related changes of gene expression in the neocortex: preliminary data on RNA-Seq of the transcriptome in three functionally distinct cortical areas. PMID:23062308
LNCipedia: a database for annotated human lncRNA transcript sequences and structures. PMID:23042674
Computational prediction of polycomb-associated long non-coding RNAs. PMID:23028655
Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression. PMID:22995832
Computational analysis of noncoding RNAs. PMID:22991327
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. PMID:22955988
GENCODE: the reference human genome annotation for The ENCODE Project. PMID:22955987
Decoding the non-coding RNAs in Alzheimer's disease. PMID:22955374
Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers. PMID:22929540
Computational identification and functional predictions of long noncoding RNA in Zea mays. PMID:22916204
Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs. PMID:22871084
Expression and function of the protein tyrosine phosphatase receptor J (PTPRJ) in normal mammary epithelial cells and breast tumors. PMID:22815804
Whole transcriptome RNA-Seq analysis of breast cancer recurrence risk using formalin-fixed paraffin-embedded tumor tissue. PMID:22808097
Involvement of long noncoding RNAs in diseases affecting the central nervous system. PMID:22699553
Dark Matter RNA: Existence, Function, and Controversy. PMID:22536205
Cigarette smoke exposure-associated alterations to non-coding RNA. PMID:22509180
Genome-wide analysis of long noncoding RNA stability. PMID:22406755
Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs. PMID:22361292
Non-coding RNAs in retinal development. PMID:22312272
Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis. PMID:22312241
The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter". PMID:22303401
Molecular evolution of the non-coding eosinophil granule ontogeny transcript. PMID:22303364
Long non-coding RNAs and cancer: a new frontier of translational research? PMID:22266873
NONCODE v3.0: integrative annotation of long noncoding RNAs. PMID:22135294
lncRNAs: finding the forest among the trees? PMID:22134744
Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression. PMID:21985610
RNA splicing control: yet another gene regulatory role for long nuclear noncoding RNAs. PMID:21941126
RNAcentral: A vision for an international database of RNA sequences. PMID:21940779
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. PMID:21890647
Non-coding RNA and antisense RNA. Nature's trash or treasure? PMID:21843589
ncFANs: a web server for functional annotation of long non-coding RNAs. PMID:21715382
The functional role of long non-coding RNA in human carcinomas. PMID:21489289
SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. PMID:21460236
Naming 'junk': human non-protein coding RNA (ncRNA) gene nomenclature. PMID:21296742
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
http://dx.doi.org/10.1093/nar/gku988

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rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826

gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826

gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826

pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826

rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.566826

rna sequence functional, regulatory and non-coding rna gene expression gene transcripts pathology rna

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ncRNAs database

SyntDB

NONCODE

LncBook

LncExpDB

LNCipedia

RNAcentral

Heart Diseases related Noncoding RNA Database

cncRNAdb

GREENC

Rfam

RNALocate

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RMBase

RPS

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EVLncRNAs

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DBtRend