27-Hydroxycholesterol, The Estrogen Receptor Modulator, Alters DNA Methylation in Breast Cancer.
PMID:35360070
MYC dosage compensation is mediated by miRNA-transcription factor interactions in aneuploid cancer.
PMID:34877484
Identification of miRNA-mRNA network and immune-related gene signatures in IgA nephropathy by integrated bioinformatics analysis.
PMID:34823491
Drug repurposing for coronavirus (SARS-CoV-2) based on gene co-expression network analysis.
PMID:34750486
miRNA Clusters with Up-Regulated Expression in Colorectal Cancer.
PMID:34198662
Human Genomics and the Biocultural Origin of Music.
PMID:34065521
Profiling of Primary and Mature miRNA Expression in Atherosclerosis-Associated Cell Types.
PMID:33980036
Computational methods for cancer driver discovery: A survey.
PMID:33859763
MicroRNA biomarkers of type 2 diabetes: A protocol for corroborating evidence by computational genomics and meta-analyses.
PMID:33822793
Deletion of hippocampal Glucocorticoid receptors unveils sex-biased microRNA expression and neuronal morphology alterations in mice.
PMID:33665240
Use of miR‑145 and testicular nuclear receptor 4 inhibition to reduce chemoresistance to docetaxel in prostate cancer.
PMID:33650661
Pilot study identifying circulating miRNA signature specific to alcoholic chronic pancreatitis and its implication on alcohol-mediated pancreatic tissue injury.
PMID:33319040
DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs.
PMID:33245765
Multi-omics profiling reveals microRNA-mediated insulin signaling networks.
PMID:32938376
MasterPATH: network analysis of functional genomics screening data.
PMID:32928103
Identification of dysregulated miRNAs-genes network in ovarian cancer: An integrative approach to uncover the molecular interactions and oncomechanisms.
PMID:32886452
MicroRNA Profiling in Wilms Tumor: Identification of Potential Biomarkers.
PMID:32766179
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma.
PMID:32703153
Enhanced immortalization, HUWE1 mutations and other biological drivers of breast invasive carcinoma in Black/African American patients.
PMID:32550556
Identification of genes and miRNA associated with idiopathic recurrent pregnancy loss: an exploratory data mining study.
PMID:32487076
Context-Specific Coordinately Regulatory Network Prioritize Breast Cancer Genetic Risk Factors.
PMID:32273883
Extracellular vesicles of U937 macrophage cell line infected with DENV-2 induce activation in endothelial cells EA.hy926.
PMID:31910224
The exploration of disease-specific gene regulatory networks in esophageal carcinoma and stomach adenocarcinoma.
PMID:31888440
RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome.
PMID:31848596
Leptin Modulates the Expression of miRNAs-Targeting POMC mRNA by the JAK2-STAT3 and PI3K-Akt Pathways.
PMID:31847355
CBNA: A control theory based method for identifying coding and non-coding cancer drivers.
PMID:31790386
Germinal Centre B Cell Functions and Lymphomagenesis: Circuits Involving MYC and MicroRNAs.
PMID:31683676
miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database.
PMID:31647101
Mutational Landscape of the BAP1 Locus Reveals an Intrinsic Control to Regulate the miRNA Network and the Binding of Protein Complexes in Uveal Melanoma.
PMID:31635116
The Selection and Validation of Reference Genes for mRNA and microRNA Expression Studies in Human Liver Slices Using RT-qPCR.
PMID:31569378
Expression Profiling of Blood microRNAs 885, 361, and 17 in the Patients with the Parkinson's disease: Integrating Interaction Data to Uncover the Possible Triggering Age-Related Mechanisms.
PMID:31551498
Inferring signalling dynamics by integrating interventional with observational data.
PMID:31510686
Gene Regulatory Networks in Peripheral Mononuclear Cells Reveals Critical Regulatory Modules and Regulators of Multiple Sclerosis.
PMID:31484947
Extensive transcriptional responses are co-ordinated by microRNAs as revealed by Exon-Intron Split Analysis (EISA).
PMID:31372646
Meta-Analysis of Gene Expression and Identification of Biological Regulatory Mechanisms in Alzheimer's Disease.
PMID:31333395
Identification and interaction analysis of key miRNAs in medullary thyroid carcinoma by bioinformatics analysis.
PMID:31322209
Integrated analysis of microRNA regulation and its interaction with mechanisms of epigenetic regulation in the etiology of systemic lupus erythematosus.
PMID:31237906
An in-silico approach for discovery of microRNA-TF regulation of DISC1 interactome mediating neuronal migration.
PMID:31098296
Music-performance regulates microRNAs in professional musicians.
PMID:30956902
Improvement of cancer subtype prediction by incorporating transcriptome expression data and heterogeneous biological networks.
PMID:30598111
miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase.
PMID:30598108
Construction of a transcription factor‑long non‑coding RNA‑microRNA network for the identification of key regulators in lung adenocarcinoma and lung squamous cell carcinoma.
PMID:30569133
miRNomes involved in imparting thermotolerance to crop plants.
PMID:30498670
Functional annotation of differentially expressed fetal cardiac microRNA targets: implication for microRNA-based cardiovascular therapeutics.
PMID:30498667
Investigating the Role of MicroRNA and Transcription Factor Co-regulatory Networks in Multiple Sclerosis Pathogenesis.
PMID:30463275
Inferring Novel Autophagy Regulators Based on Transcription Factors and Non-Coding RNAs Coordinated Regulatory Network.
PMID:30400235
Integrating Transcriptome and Experiments Reveals the Anti-diabetic Mechanism of Cyclocarya paliurus Formula.
PMID:30388616
TransmiR v2.0: an updated transcription factor-microRNA regulation database.
PMID:30371815
Systematic identification and analysis of dysregulated miRNA and transcription factor feed-forward loops in hypertrophic cardiomyopathy.
PMID:30338905
Framework for microRNA variant annotation and prioritization using human population and disease datasets.
PMID:30302893
MicroRNA-transcription factor network analysis reveals miRNAs cooperatively suppress RORA in oral squamous cell carcinoma.
PMID:30293994
Role of miRNAs in hypoxia-related disorders.
PMID:30207319
Burkitt lymphoma-associated network construction and important network motif analysis.
PMID:30127896
Construction of a microRNA‑associated feed‑forward loop network that identifies regulators of cardiac hypertrophy and acute myocardial infarction.
PMID:30066833
Trends in the development of miRNA bioinformatics tools.
PMID:29982332
TAM 2.0: tool for MicroRNA set analysis.
PMID:29878154
Integrated Characterization of MicroRNA and mRNA Transcriptome in Papillary Thyroid Carcinoma.
PMID:29713312
A meta-analysis of public microarray data identifies biological regulatory networks in Parkinson's disease.
PMID:29653596
Integration analysis of microRNA and mRNA paired expression profiling identifies deregulated microRNA-transcription factor-gene regulatory networks in ovarian endometriosis.
PMID:29357938
MicroRNA-146b promotes PI3K/AKT pathway hyperactivation and thyroid cancer progression by targeting PTEN.
PMID:29353884
Profiling analysis of circulating microRNA in peripheral blood of patients with class IV lupus nephritis.
PMID:29136041
Bortezomib-induced miRNAs direct epigenetic silencing of locus genes and trigger apoptosis in leukemia.
PMID:29120412
mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.
PMID:29077896
Biological networks in Parkinson's disease: an insight into the epigenetic mechanisms associated with this disease.
PMID:28899360
Expression of SESN1, UHRF1BP1, and miR-377-3p as prognostic markers in mutated TP53 squamous cell carcinoma of the head and neck.
PMID:28886272
Intestinal and Circulating MicroRNAs in Coeliac Disease.
PMID:28878141
Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures.
PMID:28775339
Crosstalk between microRNA and DNA Methylation Offers Potential Biomarkers and Targeted Therapies in ALK-Positive Lymphomas.
PMID:28771164
Large-Scale Analysis of Drug Side Effects via Complex Regulatory Modules Composed of microRNAs, Transcription Factors and Gene Sets.
PMID:28729650
Network of microRNA, transcription factors, target genes and host genes in human mesothelioma.
PMID:28587377
MicroRNAs in injury and repair.
PMID:28501916
Systems biology study of transcriptional and post-transcriptional co-regulatory network sheds light on key regulators involved in important biological processes in Citrus sinensis.
PMID:28461722
MicroRNA expression patterns and target prediction in multiple myeloma development and malignancy.
PMID:28458781
MYCbase: a database of functional sites and biochemical properties of Myc in both normal and cancer cells.
PMID:28454513
Identification of molecular targets for esophageal carcinoma diagnosis using miRNA-seq and RNA-seq data from The Cancer Genome Atlas: a study of 187 cases.
PMID:28415685
Extracting microRNA-gene relations from biomedical literature using distant supervision.
PMID:28263989
Identification of miRNA-mRNA Modules in Colorectal Cancer Using Rough Hypercuboid Based Supervised Clustering.
PMID:28220871
miRNAs target databases: developmental methods and target identification techniques with functional annotations.
PMID:28204845
Analysis of miRNA, mRNA, and TF interactions through network-based methods.
PMID:28194173
The early growth response protein 1-miR-30a-5p-neurogenic differentiation factor 1 axis as a novel biomarker for schizophrenia diagnosis and treatment monitoring.
PMID:28072411
Integration of MicroRNA, mRNA, and Protein Expression Data for the Identification of Cancer-Related MicroRNAs.
PMID:28056026
Targeting microRNAs: a new action mechanism of natural compounds.
PMID:28052018
Aire Downregulation Is Associated with Changes in the Posttranscriptional Control of Peripheral Tissue Antigens in Medullary Thymic Epithelial Cells.
PMID:27933063
ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data.
PMID:27924033
Regulatory network of microRNAs and genes in testicular cancer.
PMID:27900048
Networks analysis of genes and microRNAs in human Wilms' tumors.
PMID:27900039
RAID v2.0: an updated resource of RNA-associated interactions across organisms.
PMID:27899615
Regulatory network analysis of genes and microRNAs in human hepatoblastoma.
PMID:27895778
Interactive cooperation and hierarchical operation of microRNA and transcription factor crosstalk in human transcriptional regulatory network.
PMID:27879476
Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.).
PMID:27738714
Clinical Relevance and Molecular Phenotypes in Gastric Cancer, of TP53 Mutations and Gene Expressions, in Combination With Other Gene Mutations.
PMID:27708434
Analysis of microRNA and Gene Expression Profiles in Multiple Sclerosis: Integrating Interaction Data to Uncover Regulatory Mechanisms.
PMID:27694855
Regulatory network analysis of microRNAs and genes in imatinib-resistant chronic myeloid leukemia.
PMID:27638632
Current Technologies and Recent Developments for Screening of HPV-Associated Cervical and Oropharyngeal Cancers.
PMID:27618102
Decreased expression of let-7c is associated with non-response of muscle-invasive bladder cancer patients to neoadjuvant chemotherapy.
PMID:27382433
Studying Dynamic Features in Myocardial Infarction Progression by Integrating miRNA-Transcription Factor Co-Regulatory Networks and Time-Series RNA Expression Data from Peripheral Blood Mononuclear Cells.
PMID:27367417
Integrated microRNA, gene expression and transcription factors signature in papillary thyroid cancer with lymph node metastasis.
PMID:27350898
Network analysis of microRNAs, transcription factors, target genes and host genes in human anaplastic astrocytoma.
PMID:27347075
Construction of a lncRNA-mediated feed-forward loop network reveals global topological features and prognostic motifs in human cancers.
PMID:27322142
Network analysis of microRNAs, transcription factors, target genes and host genes in nasopharyngeal carcinoma.
PMID:27313701
Reconstructing the temporal progression of HIV-1 immune response pathways.
PMID:27307624
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification.
PMID:27275538
Network and pathway analysis of microRNAs, transcription factors, target genes and host genes in human glioma.
PMID:27123147
Infinity: An In-Silico Tool for Genome-Wide Prediction of Specific DNA Matrices in miRNA Genomic Loci.
PMID:27082112
Predicting miRNA Targets by Integrating Gene Regulatory Knowledge with Expression Profiles.
PMID:27064982
Identifying Cancer Subtypes from miRNA-TF-mRNA Regulatory Networks and Expression Data.
PMID:27035433
Construction and analysis of three networks of genes and microRNAs in adenocarcinoma.
PMID:26722320
microRNA and gene networks in human laryngeal cancer.
PMID:26668624
Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types.
PMID:26655252
Network analysis of microRNAs and genes in human osteosarcoma.
PMID:26622516
Exploring Transcription Factors-microRNAs Co-regulation Networks in Schizophrenia.
PMID:26609121
MicroRNA expression is altered in lateral septum across reproductive stages.
PMID:26592715
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.
PMID:26586797
Bioinformatic tools for microRNA dissection.
PMID:26578605
Identification of potential biomarkers to differentially diagnose solid pseudopapillary tumors and pancreatic malignancies via a gene regulatory network.
PMID:26578390
Decreased MicroRNA-26a expression causes cisplatin resistance in human non-small cell lung cancer.
PMID:26492332
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse.
PMID:26424082
Emerging role of transcription factor-microRNA-target gene feed-forward loops in cancer.
PMID:26405533
Identification of Biomarker and Co-Regulatory Motifs in Lung Adenocarcinoma Based on Differential Interactions.
PMID:26402252
MicroRNA and transcription factor mediated regulatory network analysis reveals critical regulators and regulatory modules in myocardial infarction.
PMID:26258537
miRegulome: a knowledge-base of miRNA regulomics and analysis.
PMID:26243198
OCDB: a database collecting genes, miRNAs and drugs for obsessive-compulsive disorder.
PMID:26228432
Integrated systems approach identifies risk regulatory pathways and key regulators in coronary artery disease.
PMID:26208504
Regulation rewiring analysis reveals mutual regulation between STAT1 and miR-155-5p in tumor immunosurveillance in seven major cancers.
PMID:26156524
A microRNA molecular modeling extension for prediction of colorectal cancer treatment.
PMID:26084510
Integrative network-based approach identifies key genetic elements in breast invasive carcinoma.
PMID:26040466
Unraveling novel TF-miRNA regulatory crosstalk in metastasis of Soft Tissue Sarcoma.
PMID:25984907
TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks.
PMID:25943543
Identification of active miRNA and transcription factor regulatory pathways in human obesity-related inflammation.
PMID:25887648
A systems biology approach reveals the dose- and time-dependent effect of primary human airway epithelium tissue culture after exposure to cigarette smoke in vitro.
PMID:25788831
Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling.
PMID:25707768
Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy.
PMID:25635527
Clinically relevant genes and regulatory pathways associated with NRASQ61 mutations in melanoma through an integrative genomics approach.
PMID:25537510
p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response.
PMID:25486198
The network of microRNAs, transcription factors, target genes and host genes in human renal cell carcinoma.
PMID:25436016
MicroRNA-21 inhibits platelet-derived growth factor-induced human aortic vascular smooth muscle cell proliferation and migration through targeting activator protein-1.
PMID:25360215
Large-scale modeling of condition-specific gene regulatory networks by information integration and inference.
PMID:25294834
MicroRNA and gene networks in human diffuse large B-cell lymphoma.
PMID:25289101
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection.
PMID:25281301
Anomalous altered expressions of downstream gene-targets in TP53-miRNA pathways in head and neck cancer.
PMID:25186767
A Comprehensive Review of Dysregulated miRNAs Involved in Cervical Cancer.
PMID:25132800
Using graphical adaptive lasso approach to construct transcription factor and microRNA's combinatorial regulatory network in breast cancer.
PMID:25014375
Large-scale investigation of human TF-miRNA relations based on coexpression profiles.
PMID:24995316
Integrative identification of deregulated miRNA/TF-mediated gene regulatory loops and networks in prostate cancer.
PMID:24968068
Apolipoprotein A-I mimetic peptide 4F rescues pulmonary hypertension by inducing microRNA-193-3p.
PMID:24963038
Construction and analysis of regulatory genetic networks in cervical cancer based on involved microRNAs, target genes, transcription factors and host genes.
PMID:24944708
miRNA gene counts in chromosomes vary widely in a species and biogenesis of miRNA largely depends on transcription or post-transcriptional processing of coding genes.
PMID:24808907
Studying the system-level involvement of microRNAs in Parkinson's disease.
PMID:24690883
Integrative analysis of miRNA-mRNA and miRNA-miRNA interactions.
PMID:24689063
Network analysis of microRNAs, genes and their regulation in human bladder cancer.
PMID:24649053
A novel in silico reverse-transcriptomics-based identification and blood-based validation of a panel of sub-type specific biomarkers in lung cancer.
PMID:24564251
Navigating the multilayered organization of eukaryotic signaling: a new trend in data integration.
PMID:24550716
Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks.
PMID:24350678
A systems' biology approach to study microRNA-mediated gene regulatory networks.
PMID:24350286
Distinct microRNA-155 expression in the vitreous of patients with primary vitreoretinal lymphoma and uveitis.
PMID:24345320
Smoking and microRNA dysregulation: a cancerous combination.
PMID:24238736
Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer.
PMID:24200043
HMDD v2.0: a database for experimentally supported human microRNA and disease associations.
PMID:24194601
Genome-wide analysis of human microRNA stability.
PMID:24187663
A systematic analysis of a mi-RNA inter-pathway regulatory motif.
PMID:24152805
microRNA and gene networks in human pancreatic cancer.
PMID:24137477
MicroRNA expression profile in human macrophages in response to Leishmania major infection.
PMID:24098824
ResponseNet2.0: Revealing signaling and regulatory pathways connecting your proteins and genes--now with human data.
PMID:23761447
Hypoxia: a master regulator of microRNA biogenesis and activity.
PMID:23712003
NRF2-ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2.
PMID:23710289
MicroRNAs: an emerging science in cancer epigenetics.
PMID:23497588
A local genetic algorithm for the identification of condition-specific microRNA-gene modules.
PMID:23401666
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.
PMID:23384594
Important miRs of pathways in different tumor types.
PMID:23358700
Minireview: miRomics in endocrinology: a novel approach for modeling endocrine diseases.
PMID:23349525
SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks.
PMID:23331499
An integrative analysis of cellular contexts, miRNAs and mRNAs reveals network clusters associated with antiestrogen-resistant breast cancer cells.
PMID:23270413
Microarray-based analysis of gene regulation by transcription factors and microRNAs in glioma.
PMID:23212403
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.
PMID:23161675
Sequence fingerprints of microRNA conservation.
PMID:23110219
Regulatory network operations in the Pathway Tools software.
PMID:22998532
Deciphering the transcriptional regulation of microRNA genes in humans with ACTLocater.
PMID:22941648
β-adrenoceptor regulates miRNA expression in rat heart.
PMID:22847192
Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs.
PMID:22824421
Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs.
PMID:22798498
miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes.
PMID:22768240
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer.
PMID:22691419
Cross talk between microRNA and coding cancer genes.
PMID:22647358
Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers.
PMID:22645320
The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops.
PMID:22641035
MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).
PMID:22618880
The magnitude and colour of noise in genetic negative feedback systems.
PMID:22581772
Mechanism(s) of alteration of micro RNA expressions in Huntington's disease and their possible contributions to the observed cellular and molecular dysfunctions in the disease.
PMID:22581158
Discovering dysfunction of multiple microRNAs cooperation in disease by a conserved microRNA co-expression network.
PMID:22384175
Ascl2 knockdown results in tumor growth arrest by miRNA-302b-related inhibition of colon cancer progenitor cells.
PMID:22384170
MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia.
PMID:22362744
Network analysis of microRNAs and their regulation in human ovarian cancer.
PMID:22050994
Transcriptional regulation of co-expressed microRNA target genes.
PMID:22002038
Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data.
PMID:21821656
A curated database of miRNA mediated feed-forward loops involving MYC as master regulator.
PMID:21390222
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.
PMID:21375730
Cancer microRNAs: from subtype profiling to predictors of response to therapy.
PMID:21354374
dPORE-miRNA: polymorphic regulation of microRNA genes.
PMID:21326606
Human microRNA oncogenes and tumor suppressors show significantly different biological patterns: from functions to targets.
PMID:20927335
CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.
PMID:20731828
microRNA evolution in a human transcription factor and microRNA regulatory network.
PMID:20584335
PuTmiR: a database for extracting neighboring transcription factors of human microRNAs.
PMID:20398296
Altered expression of microRNAs in the myocardium of rats with acute myocardial infarction.
PMID:20187981