The Chromosome 7 Annotation Project
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The Chromosome 7 Annotation Project
metasource: Fairsharing.org
version: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
chr7
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
Names
More detailed information about this field from each metasource.
The Chromosome 7 Annotation Project
metasource: Fairsharing.orgversion: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
chr7
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:03.849248
Names
More detailed information about this field from each metasource.
The Chromosome 7 Annotation Project
metasource: Fairsharing.orgversion: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
chr7
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:03.849248
The objective of this project is to generate the most comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications.
Description
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The objective of this project is to generate the most comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications.
metasource: Fairsharing.orgversion: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The objective of this project is to generate the most comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications. The DNA sequence assembly, which encompasses 158,329,839 nucleotides (nt) of DNA, represents the most complete description of this chromosome available. It was generated utilizing Celera whole genome shotgun information, cloned-based sequence from Genbank, and targeted sequence from The Centre for Applied Genomics (TCAG). In comparison to the first version release (Science, 2003) an additional 376,050 nt is present and 23 additional gaps have been filled. This assembly (named CRA_TCAGchr7v2), amongst other variations, contains 704,297 nt of verified sequence not found in NCBI's Build 34 of chromosome 7. To fulfill the objective of having every biological and medically relevant feature annotated along the sequence assembly, all annotation records have been updated and new ones added. For example, the CRA_TCAGchr7v2 assembly displays information from the most current RefSeq, Ensembl, Celera published, UCSC, TIGR Human Gene Index, dbEST and mRNA datasets. Unique TCAG annotations have also been added including a new 'experimentally-confirmed' gene track, all known structural features, as well as 619 new clinical cases of defined phenotype. A new proprietary segmental duplication browser has also been developed for the chromosome 7 browser.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
The objective of this project is to generate the most comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications. In our vision, the DNA sequence of chromosome 7 should be made available in a user-friendly manner having every biological and medically relevant feature annotated along its length. We have established this website and database as one step towards this goal. In addition to being a primary data source we foresee this site serving as a "weighing station" for testing community ideas and information to produce highly curated data to be submitted to other databases such as NCBI, Ensembl, and UCSC. Therefore, any useful data submitted to us will be curated and shown in this database.
metasource: re3data.orgversion: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
The Chromosome 7 database is a community-curated project which contains the most up to date collation of sequence, gene, and other annotations from all databases (eg. Celera published, NCBI, Ensembl, RIKEN, UCSC) as well as unpublished data.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:03.849248
Webpage:
http://www.chr7.orgWebpage
More detailed information about this field from each metasource.
http://www.chr7.org
metasource: Fairsharing.orgversion: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://www.chr7.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
Licence:
Name: otherLicence name
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other
metasource: re3data.orgversion: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
Licence URL
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http://www.tcag.ca/facilities/terms.html
metasource: re3data.orgversion: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
Human chromosome 7: DNA sequence and biology
PMID: 12690205
metasource: Fairsharing.org
version: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
Publications
More detailed information about this field from each metasource.
Human chromosome 7: DNA sequence and biology
PMID: 12690205
metasource: Fairsharing.org
version: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
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Human chromosome 7: DNA sequence and biology
PubMed citations: 63.
63 articles citing: Human chromosome 7: DNA sequence and biology
Molecular Profiling of Docetaxel-Resistant Prostate Cancer Cells Identifies Multiple Mechanisms of Therapeutic Resistance. PMID:33799432
C7ORF41 Regulates Inflammation by Inhibiting NF-κB Signaling Pathway. PMID:33506033
MicroRNA-802 Suppresses Tumorigenesis of Colorectal Cancer via Regulating UBN2. PMID:33177873
MicroRNA-1275 inhibits cell migration and invasion in gastric cancer by regulating vimentin and E-cadherin via JAZF1. PMID:31357957
GATAD1 gene amplification promotes glioma malignancy by directly regulating CCND1 transcription. PMID:31286678
UBN2 promotes tumor progression via the Ras/MAPK pathway and predicts poor prognosis in colorectal cancer. PMID:31110467
Potential Mutations in Chinese Pathologic Myopic Patients and Contributions to Phenotype. PMID:30747064
Telomere elongation through hTERT immortalization leads to chromosome repositioning in control cells and genomic instability in Hutchinson-Gilford progeria syndrome fibroblasts, expressing a novel SUN1 isoform. PMID:30474255
Prevalence of Chromosome 7 Abnormalities in Myelodysplastic Syndrome and Acute Myeloid Leukemia: A Single Center Study and Brief Literature Review. PMID:30369728
The untold stories of the speech gene, the FOXP2 cancer gene. PMID:29725501
A novel description of a syndrome consisting of 7q21.3 deletion including DYNC1I1 with preserved DLX5/6 without ectrodactyly: a case report. PMID:27291887
Update on the implication of potassium channels in autism: K(+) channelautism spectrum disorder. PMID:25784856
De novo 393 kb microdeletion of 7p11.2 characterized by aCGH in a boy with psychomotor retardation and dysmorphic features. PMID:25606410
Sp6 and Sp8 transcription factors control AER formation and dorsal-ventral patterning in limb development. PMID:25166858
Distribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7. PMID:24973960
Exome sequencing identifies de novo gain of function missense mutation in KCND2 in identical twins with autism and seizures that slows potassium channel inactivation. PMID:24501278
Immune dysregulation in autism spectrum disorder. PMID:24297668
High resolution crystal structure of human β-glucuronidase reveals structural basis of lysosome targeting. PMID:24260279
The expanding genomic landscape of autism: discovering the 'forest' beyond the 'trees'. PMID:23637569
Bidirectional regulation of dendritic voltage-gated potassium channels by the fragile X mental retardation protein. PMID:22099464
A symphony of regulations centered on p63 to control development of ectoderm-derived structures. PMID:21716671
Functional expression of novel human and murine AKR1B genes. PMID:21276782
Functional annotation of genes overlapping copy number variants in autistic patients: focus on axon pathfinding. PMID:20885821
A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk. PMID:20729854
Mapping of balanced chromosome translocation breakpoints to the basepair level from microdissected chromosomes. PMID:20597996
Hepatitis B virus and Homo sapiens proteome-wide analysis: A profusion of viral peptide overlaps in neuron-specific human proteins. PMID:20531967
Differential decay of parent-of-origin-specific genomic sharing in cystic fibrosis-affected sib pairs maps a paternally imprinted locus to 7q34. PMID:20051989
Implication of long-distance regulation of the HOXA cluster in a patient with postaxial polydactyly. PMID:19672683
An overview of nested genes in eukaryotic genomes. PMID:19542305
Split hand/foot malformation due to chromosome 7q aberrations(SHFM1): additional support for functional haploinsufficiency as the causative mechanism. PMID:19401716
Noncoding RNAs in mental retardation. PMID:19159391
Padlock and proximity probes for in situ and array-based analyses: tools for the post-genomic era. PMID:18629012
Infantile spasms is associated with deletion of the MAGI2 gene on chromosome 7q11.23-q21.11. PMID:18565486
The common inversion of the Williams-Beuren syndrome region at 7q11.23 does not cause clinical symptoms. PMID:18553513
The radial arrangement of the human chromosome 7 in the lymphocyte cell nucleus is associated with chromosomal band gene density. PMID:18418623
Non-random retention of protein-coding overlapping genes in Metazoa. PMID:18416813
Copy number variation at the 7q11.23 segmental duplications is a susceptibility factor for the Williams-Beuren syndrome deletion. PMID:18292220
Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines. PMID:18256232
Structural variation of chromosomes in autism spectrum disorder. PMID:18252227
Contribution of SHANK3 mutations to autism spectrum disorder. PMID:17999366
The diploid genome sequence of an individual human. PMID:17803354
Identification of the imprinted KLF14 transcription factor undergoing human-specific accelerated evolution. PMID:17480121
Human GLI3 intragenic conserved non-coding sequences are tissue-specific enhancers. PMID:17426814
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. PMID:17386095
Gene discovery at the human T-cell receptor alpha/delta locus. PMID:17165047
Genome assembly comparison identifies structural variants in the human genome. PMID:17115057
Absence of a paternally inherited FOXP2 gene in developmental verbal dyspraxia. PMID:17033973
Strategies for the detection of copy number and other structural variants in the human genome. PMID:16848978
Duplication and relocation of the functional DPY19L2 gene within low copy repeats. PMID:16526957
GONOME: measuring correlations between GO terms and genomic positions. PMID:16504139
Discovery of human inversion polymorphisms by comparative analysis of human and chimpanzee DNA sequence assemblies. PMID:16254605
Severe expressive-language delay related to duplication of the Williams-Beuren locus. PMID:16236740
Multi-alignment of orthologous genome regions in five species provides new insights into the evolutionary make-up of mammalian genomes. PMID:16235120
Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23. PMID:16140988
Ataxia and peripheral nerve hypomyelination in ADAM22-deficient mice. PMID:15876356
Identification of C7orf11 (TTDN1) gene mutations and genetic heterogeneity in nonphotosensitive trichothiodystrophy. PMID:15645389
RNAdb--a comprehensive mammalian noncoding RNA database. PMID:15608161
A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. PMID:15514080
Novel procedures for high-throughput analysis of a frequent insertion-deletion polymorphism in the human T-cell receptor beta locus. PMID:15160257
A scale invariant clustering of genes on human chromosome 7. PMID:15040817
The bioinformatics challenges in comparative analysis of cereal genomes-an overview. PMID:14770300
Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. PMID:14656967
Increased risk for developmental delay in Saethre-Chotzen syndrome is associated with TWIST deletions: an improved strategy for TWIST mutation screening. PMID:14513358
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chromosome
metasource: Fairsharing.org
version: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
human genome databases, maps and viewers
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
dna sequenzes
metasource: re3data.org
version: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
chromosomal abnormalities
metasource: re3data.org
version: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
disease
metasource: re3data.org
version: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
human genetics
metasource: re3data.org
version: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
human biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
sequencing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:03.849248
Tags
More detailed information about this field from each metasource.
chromosome
metasource: Fairsharing.orgversion: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: The Chromosome 7 Annotation Project; The Chromosome 7 Annotation Project; DOI: https://doi.org/10.25504/FAIRsharing.rkq0vj; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
human genome databases, maps and viewers
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
dna sequenzes
metasource: re3data.orgversion: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
chromosomal abnormalities
metasource: re3data.orgversion: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
disease
metasource: re3data.orgversion: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
human genetics
metasource: re3data.orgversion: re3data.org: The Chromosome 7 Annotation Project; editing status 2022-05-20; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3VP9V last accessed: 2022-11-04
dna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:03.849248
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:03.849248
pathology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:03.849248
human biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:03.849248
sequencing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:03.849248
chromosome dna sequences gene expression genome human and other vertebrate genomes human genome, maps and viewers dna sequenzes chromosomal abnormalities disease human genetics dna mapping pathology human sequencing
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