Plant Natural Antisense Transcripts Database
Names
More detailed information about this field from each metasource.
Plant Natural Antisense Transcripts Database
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
PlantNATsDB
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
plantnatsdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
Names
More detailed information about this field from each metasource.
Plant Natural Antisense Transcripts Database
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
PlantNATsDB
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
plantnatsdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:28.364552
Other names: PlantNATsDB, plantnatsdb
Names
More detailed information about this field from each metasource.
Plant Natural Antisense Transcripts Database
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
PlantNATsDB
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
plantnatsdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:28.364552
This source may no longer be available. No known URL could be resolved successfully.
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform for annotating and discovering NATs by integrating various data sources. PlantNATsDB also provides an integrative, interactive and information-rich web graphical interface to display multidimensional data, and facilitate plant research community and the discovery of functional NATs.
Description
More detailed information about this field from each metasource.
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natural Antisense Transcripts DataBase) is a platform for annotating and discovering NATs by integrating various data sources. PlantNATsDB also provides an integrative, interactive and information-rich web graphical interface to display multidimensional data, and facilitate plant research community and the discovery of functional NATs.
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Plant natural antisense transcripts
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. Plant Natural Antisense Transcripts DataBase is a platform for annotating and discovering NATs by integrating various data sources.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:28.364552
Webpage:
http://bis.zju.edu.cn/pnatdb/Webpage
More detailed information about this field from each metasource.
http://bis.zju.edu.cn/pnatdb/
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
Publications:
Publications
More detailed information about this field from each metasource.
PlantNATsDB: a comprehensive database of plant natural antisense transcripts
PMID: 22058132
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
http://dx.doi.org/10.1093/nar/GKR823
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
PlantNATsDB: a comprehensive database of plant natural antisense transcripts
PMID: 22058132
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
http://dx.doi.org/10.1093/nar/GKR823
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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PlantNATsDB: a comprehensive database of plant natural antisense transcripts
PubMed citations: 38.
38 articles citing: PlantNATsDB: a comprehensive database of plant natural antisense transcripts
The Identification of MATE Antisense Transcripts in Soybean Using Strand-Specific RNA-Seq Datasets. PMID:35205273
Long Non-Coding RNAs as Emerging Regulators of Pathogen Response in Plants. PMID:35076574
Small RNA profiling for identification of microRNAs involved in regulation of seed development and lipid biosynthesis in yellowhorn. PMID:34641783
CircPlant: An Integrated Tool for circRNA Detection and Functional Prediction in Plants. PMID:33157302
Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation. PMID:33046001
NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs. PMID:32463462
Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing. PMID:31885040
An Overview of Methodologies in Studying lncRNAs in the High-Throughput Era: When Acronyms ATTACK! PMID:30945176
Transcriptional regulation of osmotic stress tolerance in wheat (Triticum aestivum L.). PMID:30109563
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Present Scenario of Long Non-Coding RNAs in Plants. PMID:29657289
OverGeneDB: a database of 5' end protein coding overlapping genes in human and mouse genomes. PMID:29069459
Computational tools for plant small RNA detection and categorization. PMID:29059285
Non-coding RNAs and Their Roles in Stress Response in Plants. PMID:29017967
EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. PMID:28985416
Long Noncoding RNAs in Plants. PMID:28815539
Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs. PMID:28786034
Genome-wide Identification and Characterization of Natural Antisense Transcripts by Strand-specific RNA Sequencing in Ganoderma lucidum. PMID:28720793
PceRBase: a database of plant competing endogenous RNA. PMID:28053167
PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs). PMID:27936097
Genome-Wide Identification of MicroRNAs and Their Targets in the Leaves and Fruits of Eucommia ulmoides Using High-Throughput Sequencing. PMID:27877179
Long non-coding RNAs are major contributors to transcriptome changes in sunflower meiocytes with different recombination rates. PMID:27401977
lncRNA-RNA Interactions across the Human Transcriptome. PMID:26930590
NATpipe: an integrative pipeline for systematical discovery of natural antisense transcripts (NATs) and phase-distributed nat-siRNAs from de novo assembled transcriptomes. PMID:26858106
Co-expression network analysis reveals transcription factors associated to cell wall biosynthesis in sugarcane. PMID:26820137
CANTATAdb: A Collection of Plant Long Non-Coding RNAs. PMID:26657895
Long non-coding RNAs and their biological roles in plants. PMID:25936895
Genome-wide view of natural antisense transcripts in Arabidopsis thaliana. PMID:25922535
Bioinformatics analysis of small RNAs in pima (Gossypium barbadense L.). PMID:25679373
Small RNAs as important regulators for the hybrid vigour of super-hybrid rice. PMID:25129133
Extending the sRNAome of apple by next-generation sequencing. PMID:24752316
Natural antisense transcripts in plants: a review and identification in soybean infected with Phakopsora pachyrhizi SuperSAGE library. PMID:23878522
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data. PMID:23816784
Prediction and identification of natural antisense transcripts and their small RNAs in soybean (Glycine max). PMID:23617936
Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues. PMID:23505223
PLncDB: plant long non-coding RNA database. PMID:23476021
Development of a rapid and inexpensive method to reveal natural antisense transcripts. PMID:22971421
Epigenetic responses to stress: triple defense? PMID:22960026 - http://dx.doi.org/10.1093/nar/GKR823
Tags:
Tags
More detailed information about this field from each metasource.
biological process
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cellular component
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene model annotation
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene name
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular function
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
transcript
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
untranslated rna
metasource: Fairsharing.org
version: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
physiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:28.364552
Tags
More detailed information about this field from each metasource.
biological process
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cellular component
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene model annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene name
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular function
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
transcript
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
untranslated rna
metasource: Fairsharing.orgversion: FAIRsharing.org: PlantNATsDB; Plant Natural Antisense Transcripts Database; DOI: https://doi.org/10.25504/FAIRsharing.rn1pxg; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:28.364552
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:28.364552
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:28.364552
pathology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:28.364552
physiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:28.364552
biological process cellular component dna sequences gene model annotation gene name molecular function transcript untranslated rna plant plant plant biology functional, regulatory and non-coding rna gene expression pathology physiology
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