R35502 last accessed: 2022-11-04

bacmap
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:58.995288

Other names: BacMap Genome Atlas, bacmap

BacMap is a picture atlas of annotated bacterial genomes. It is an interactive visual database containing hundreds of fully labeled, zoomable, and searchable maps of bacterial genomes.

Webpage:

http://bacmap.wishartlab.com

Licence:

Name: Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported (CC BY-NC-SA 3.0)
URL: https://creativecommons.org/licenses/by-nc-sa/3.0/

Publications:

Publications
More detailed information about this field from each metasource.

BacMap: an interactive picture atlas of annotated bacterial genomes
PMID: 15608206
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

BacMap: an up-to-date electronic atlas of annotated bacterial genomes
PMID: 22135301
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:58.995288

http://dx.doi.org/10.1093/nar/GKR1105
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

BacMap: an interactive picture atlas of annotated bacterial genomes PubMed citations: 22.

22 articles citing: BacMap: an interactive picture atlas of annotated bacterial genomes

Artificial Rearing of Atlantic Salmon Juveniles for Supportive Breeding Programs Induces Long-Term Effects on Gut Microbiota after Stocking. PMID:34576827
Rectal and Naris Swabs: Practical and Informative Samples for Analyzing the Microbiota of Critically Ill Patients. PMID:29898981
Abundance, diversity and domain architecture variability in prokaryotic DNA-binding transcription factors. PMID:29614096
Analysis of Spo0M function in Bacillus subtilis. PMID:28234965
Assessing in silico the recruitment and functional spectrum of bacterial enzymes from secondary metabolism. PMID:28125959
The landscape of microbial phenotypic traits and associated genes. PMID:27915291
OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes. PMID:26543854
Databases for Microbiologists. PMID:26013493
Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal. PMID:24899249
Campylobacter concisus and inflammatory bowel disease. PMID:24574800
Biodiversity and functional genomics in the human microbiome. PMID:23140990
METAGENassist: a comprehensive web server for comparative metagenomics. PMID:22645318
BacMap: an up-to-date electronic atlas of annotated bacterial genomes. PMID:22135301
PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes. PMID:21781326
Genome (re-)annotation and open-source annotation pipelines. PMID:21255336
Multi-locus sequence typing of a geographically and temporally diverse sample of the highly clonal human pathogen Bartonella quintana. PMID:20333257
PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation. PMID:18483082
The endosymbiont Wolbachia pipientis induces the expression of host antioxidant proteins in an Aedes albopictus cell line. PMID:18461124
Omp85(Tt) from Thermus thermophilus HB27: an ancestral type of the Omp85 protein family. PMID:18456816
Interplay between DtxR and nitric oxide reductase activities: a functional genomics approach indicating involvement of homologous protein domains in bacterial pathogenesis. PMID:17877539
Improving the accuracy of protein secondary structure prediction using structural alignment. PMID:16774686
BASys: a web server for automated bacterial genome annotation. PMID:15980511
BacMap: an up-to-date electronic atlas of annotated bacterial genomes PubMed citations: 10.

10 articles citing: BacMap: an up-to-date electronic atlas of annotated bacterial genomes

Feed and Host Genetics Drive Microbiome Diversity with Resultant Consequences for Production Traits in Mass-Reared Black Soldier Fly (Hermetia illucens) Larvae. PMID:34940170
Distribution and preservation of the components of the engulfment. What is beyond representative genomes? PMID:33651833
Microbiota characterization of Exaiptasia diaphana from the Great Barrier Reef. PMID:33499977
Using Chemical Knowledge to Uncover New Biological Function: Discovery of the Cylindrocyclophane Biosynthetic Pathway. PMID:31723311
Functional Characterization and Structural Analysis of NADH Oxidase Mutants from Thermus thermophilus HB27: Role of Residues 166, 174, and 194 in the Catalytic Properties and Thermostability. PMID:31683638
Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus. PMID:31681953
The Code of Silence: Widespread Associations Between Synonymous Codon Biases and Gene Function. PMID:26538122
Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity--a large-scale system analysis of decoded bacterial genomes. PMID:26459834
Contribution of phage-derived genomic islands to the virulence of facultative bacterial pathogens. PMID:23035931
METAGENassist: a comprehensive web server for comparative metagenomics. PMID:22645318
http://dx.doi.org/10.1093/nar/GKR1105

Tags:

Tags
More detailed information about this field from each metasource.

dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

free text
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

function analysis
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

gene name
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

genome
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

genome map
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

image
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

prophage
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

protein structure
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

taxonomic classification
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: BacMap; BacMap; DOI: https://doi.org/10.25504/FAIRsharing.z6rbe3; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

general genomics databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

bacteria
metasource: re3data.org
version: re3data.org: BacMap; editing status 2019-02-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35502 last accessed: 2022-11-04

chromosome
metasource: re3data.org
version: re3data.org: BacMap; editing status 2019-02-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35502 last accessed: 2022-11-04

gene annotation
metasource: re3data.org
version: re3data.org: BacMap; editing status 2019-02-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35502 last accessed: 2022-11-04

gene sequence
metasource: re3data.org
version: re3data.org: BacMap; editing status 2019-02-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35502 last accessed: 2022-11-04

genomes
metasource: re3data.org
version: re3data.org: BacMap; editing status 2019-02-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35502 last accessed: 2022-11-04

prokaryotic species
metasource: re3data.org
version: re3data.org: BacMap; editing status 2019-02-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35502 last accessed: 2022-11-04

mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:58.995288

molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:58.995288

dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:58.995288

genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:58.995288

pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:58.995288

dna sequences free text function analysis gene name genome genome map phenotype prophage protein structure taxonomic classification polypeptide region genomics general genomics bacteria chromosome gene annotation gene sequence genomes prokaryotic species mapping molecular interactions, pathways and networks dna genomics pathology

More to explore:

1/20

Previous Next

Need help integrating and/or managing biomedical data?

Webpage:

Licence:

More to explore:

1/20

Narcisse

EBI Genomes

Entrez Genomes

LongGeneDB

TransportDB

Database of Bacterial Exotoxins for Human

PathBank

GeneNest

The Cancer Genome Atlas

CoGenT++

UCSC Genome Browser database

Bacterial CSDB (BCSDB)

GenDiS

NCBI Assembly

CAMERA

Effective

PATRIC, the bacterial bioinformatics database and analysis resource

Insertion Sequence Finder

GenoList Genome Browser

Visual Database for Organelle Genome