Human Disease-Related Viral Integration Sites
Names
More detailed information about this field from each metasource.
Human Disease-Related Viral Integration Sites
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Dr.VIS
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
dr.vis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
Names
More detailed information about this field from each metasource.
Human Disease-Related Viral Integration Sites
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Dr.VIS
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
dr.vis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
Names
More detailed information about this field from each metasource.
Human Disease-Related Viral Integration Sites
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Dr.VIS
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
dr.vis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
This source may no longer be available. No known URL could be resolved successfully.
Dr.VIS collects and locates human disease-related viral integration sites. So far, about 600 sites covering 5 virus organisms and 11 human diseases are available. Integration sites in Dr.VIS are located against chromesome, cytoband, gene and refseq position as specific as possible. Viral-cellular junction sequences are extracted from papers and nucleotide databases, and linked to cooresponding integration sites Graphic views summarizing distribution of viral integration sites are generated according to chromosome maps.
Description
More detailed information about this field from each metasource.
Dr.VIS collects and locates human disease-related viral integration sites. So far, about 600 sites covering 5 virus organisms and 11 human diseases are available. Integration sites in Dr.VIS are located against chromesome, cytoband, gene and refseq position as specific as possible. Viral-cellular junction sequences are extracted from papers and nucleotide databases, and linked to cooresponding integration sites Graphic views summarizing distribution of viral integration sites are generated according to chromosome maps.
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Chromosomal integration sites of viruses in the human tumor
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Collects and locates human disease-related viral integration sites. So far, about 600 sites covering 5 virus organisms and 11 human diseases are available.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
Webpage:
http://www.bioinfo.org/drvis/index.phpWebpage
More detailed information about this field from each metasource.
http://www.bioinfo.org/drvis/index.php
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://www.bioinfo.org/dr.vis
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://202.120.189.88/drvis/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
Publications:
Publications
More detailed information about this field from each metasource.
Dr.VIS: a database of human disease-related viral integration sites
PMID: 22135288
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing
PMID: 25355513
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/gku1074
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Dr.VIS: a database of human disease-related viral integration sites
PMID: 22135288
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing
PMID: 25355513
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/gku1074
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Dr.VIS: a database of human disease-related viral integration sites
PubMed citations: 9.
9 articles citing: Dr.VIS: a database of human disease-related viral integration sites
DBGC: A Database of Human Gastric Cancer. PMID:26566288
HPVbase--a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas. PMID:26205472
Two less common human microRNAs miR-875 and miR-3144 target a conserved site of E6 oncogene in most high-risk human papillomavirus subtypes. PMID:25913515
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing. PMID:25355513
Papillomavirus genomes associate with BRD4 to replicate at fragile sites in the host genome. PMID:24832099
SIDD: a semantically integrated database towards a global view of human disease. PMID:24146757
Multiplex Identification of Human Papillomavirus 16 DNA Integration Sites in Cervical Carcinomas. PMID:23824673
ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution. PMID:23314323 -
Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing
PubMed citations: 8.
8 articles citing: Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing
Combined nanopore adaptive sequencing and enzyme-based host depletion efficiently enriched microbial sequences and identified missing respiratory pathogens. PMID:34627155
ViMIC: a database of human disease-related virus mutations, integration sites and cis-effects. PMID:34500462
VISDB: a manually curated database of viral integration sites in the human genome. PMID:31598702
HPV16 integration probably contributes to cervical oncogenesis through interrupting tumor suppressor genes and inducing chromosome instability. PMID:27884161
Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology. PMID:27806689
Low expression of ARID1A correlates with poor prognosis in intrahepatic cholangiocarcinoma. PMID:27433094
Combined hepatocellular cholangiocarcinoma: Controversies to be addressed. PMID:27182157
HPVbase--a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas. PMID:26205472 - http://dx.doi.org/10.1093/nar/gku1074
Tags:
Tags
More detailed information about this field from each metasource.
chromosomal region
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
disease
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
sequence position
metasource: Fairsharing.org
version: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
gene-, system- or disease-specific databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
virology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
human biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.429369
Tags
More detailed information about this field from each metasource.
chromosomal region
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
disease
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
sequence position
metasource: Fairsharing.orgversion: FAIRsharing.org: Dr.VIS; Human Disease-Related Viral Integration Sites; DOI: https://doi.org/10.25504/FAIRsharing.tw7vf; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
gene-, system- or disease-specific databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
virology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
pathology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
human biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
dna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:52.429369
chromosomal region dna sequences disease gene phenotype sequence position human genes and diseases gene-, system- or disease-specific virology pathology human dna gene transcripts
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