LncBook

LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of human lncRNAs and systematic curation of lncRNAs by multi-omics data integration, functional annotation and disease association. It integrates multi-omics data from expression, methylation, genome variation and lncRNA-miRNA interaction. A core component of LncBook is the community-curated LncRNAWiki portal, which a wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs).

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Publications

More detailed information about this field from each metasource. ×

LncBook: a curated knowledgebase of human long non-coding RNAs
PMID: 30329098

metasource: Fairsharing.org
version: None

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LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs
PMID: 25399417

metasource: Fairsharing.org
version: None

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Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook
PMID: 31524988

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.628197

Close

• LncBook: a curated knowledgebase of human long non-coding RNAs PubMed citations: 76.

  76 articles citing: LncBook: a curated knowledgebase of human long non-coding RNAs

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  The Functional Role of Long Non-Coding RNA in Myogenesis and Skeletal Muscle Atrophy. PMID:35892588

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  Long non-coding RNA (lncRNA): A potential therapeutic target in acute lung injury. PMID:35873025

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  Investigation of rumen long noncoding RNA before and after weaning in cattle. PMID:35869425

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  MALINC1 an Immune-Related Long Non-Coding RNA Associated with Early-Stage Breast Cancer Progression. PMID:35740485

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  Long Noncoding RNAs and Mitochondrial Homeostasis in the Development of Diabetic Retinopathy. PMID:35733767

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  dbEssLnc: A manually curated database of human and mouse essential lncRNA genes. PMID:35685362

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  The Emerging Roles of Long Non-Coding RNAs in Intellectual Disability and Related Neurodevelopmental Disorders. PMID:35682796

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  Analysis of the lncRNA-Associated Competing Endogenous RNA (ceRNA) Network for Tendinopathy. PMID:35645614

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  Non-Coding RNAs in Tuberculosis Epidemiology: Platforms and Approaches for Investigating the Genome's Dark Matter. PMID:35457250

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  Obtaining Reliable RT-qPCR Results in Molecular Diagnostics-MIQE Goals and Pitfalls for Transcriptional Biomarker Discovery. PMID:35330136

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  LncPep: A Resource of Translational Evidences for lncRNAs. PMID:35141219

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  LncRNA Tug1 maintains blood-testis barrier integrity by modulating Ccl2 expression in high-fat diet mice. PMID:35103851

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  Exploring clinical implications and role of non-coding RNAs in lung carcinogenesis. PMID:35076850

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  Myoparr-Associated and -Independent Multiple Roles of Heterogeneous Nuclear Ribonucleoprotein K during Skeletal Muscle Cell Differentiation. PMID:35008534

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  Epigenetics in neurodegenerative disorders induced by pesticides. PMID:34893084

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  Advances in Non-Coding RNA Sequencing. PMID:34842804

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  Effect of Cold Atmospheric Plasma on Epigenetic Changes, DNA Damage, and Possibilities for Its Use in Synergistic Cancer Therapy. PMID:34830132

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  LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. PMID:34751395

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  BrainBase: a curated knowledgebase for brain diseases. PMID:34718720

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  Identification of sheep lncRNAs related to the immune response to vaccines and aluminium adjuvants. PMID:34706639

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  LINC00958 promotes bladder cancer carcinogenesis by targeting miR-490-3p and AURKA. PMID:34702201

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  (In)Distinctive Role of Long Non-Coding RNAs in Common and Rare Ovarian Cancers. PMID:34680193

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  Comprehensive Analysis of Key mRNAs and lncRNAs in Osteosarcoma Response to Preoperative Chemotherapy with Prognostic Values. PMID:34671904

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  Designing libraries for pooled CRISPR functional screens of long noncoding RNAs. PMID:34533605

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  Long non-coding RNA VPS9D1-AS1 promotes growth of colon adenocarcinoma by sponging miR-1301-3p and CLDN1. PMID:34519940

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  Epigenetic Regulation of the Vascular Endothelium by Angiogenic LncRNAs. PMID:34512715

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  The Emerging Role of Long Non-Coding RNAs and MicroRNAs in Neurodegenerative Diseases: A Perspective of Machine Learning. PMID:34439798

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  Illuminating lncRNA Function Through Target Prediction. PMID:34417758

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  Transposable element sequence fragments incorporated into coding and noncoding transcripts modulate the transcriptome of human pluripotent stem cells. PMID:34390351

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  Cancer LncRNA Census 2 (CLC2): an enhanced resource reveals clinical features of cancer lncRNAs. PMID:34316704

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  Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748

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  The potential role of long noncoding RNAs in primary open-angle glaucoma. PMID:34244823

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  LncRNAs and Available Databases. PMID:34160796

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  Decoding LncRNAs. PMID:34072257

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  Multi-Omic Meta-Analysis of Transcriptomes and the Bibliome Uncovers Novel Hypoxia-Inducible Genes. PMID:34065451

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  LncRNA PINK1-AS promotes Gαi1-driven gastric cancer tumorigenesis by sponging microRNA-200a. PMID:33958720

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  Functional annotation of lncRNA in high-throughput screening. PMID:33835127

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  LncRNA RP1-85F18.6 affects osteoblast cells by regulating the cell cycle. PMID:33817281

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  Breast Cancer and the Other Non-Coding RNAs. PMID:33807045

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  An Analysis of Differentially Expressed Coding and Long Non-Coding RNAs in Multiple Models of Skeletal Muscle Atrophy. PMID:33806354

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  Approaches to Identify and Characterise the Post-Transcriptional Roles of lncRNAs in Cancer. PMID:33803328

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  Long Non-Coding RNA Landscape in Prostate Cancer Molecular Subtypes: A Feature Selection Approach. PMID:33672425

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  Genome-wide identification and functional prediction of long non-coding RNAs in Sprague-Dawley rats during heat stress. PMID:33596828

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  Non-Coding RNAs in the Transcriptional Network That Differentiates Skeletal Muscles of Sedentary from Long-Term Endurance- and Resistance-Trained Elderly. PMID:33546468

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  Functional lncRNA-miRNA-mRNA Networks in Response to Baicalein Treatment in Hepatocellular Carcinoma. PMID:33511213

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  Epigenetic and non-coding regulation of alcohol abuse and addiction. PMID:33461665

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  Long Non-Coding RNAs: The Regulatory Mechanisms, Research Strategies, and Future Directions in Cancers. PMID:33392092

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  The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis. PMID:33339309

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  Direct Interactions with Nascent Transcripts Is Potentially a Common Targeting Mechanism of Long Non-Coding RNAs. PMID:33321875

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  The landscape of long noncoding RNA-involved and tumor-specific fusions across various cancers. PMID:33275145

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  Perversely expressed long noncoding RNAs can alter host response and viral proliferation in SARS-CoV-2 infection. PMID:33224264

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  Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. PMID:33219685

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  Overlapping mechanisms of lncRNA and expanded microsatellite RNA. PMID:33191580

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  Emerging Roles of Long Noncoding RNAs in the Cytoplasmic Milieu. PMID:33182489

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  Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. PMID:33175170

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  RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848

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  LncExpDB: an expression database of human long non-coding RNAs. PMID:33045751

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  lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA. PMID:33020484

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  The Interplay between Long Noncoding RNAs and Proteins of the Epigenetic Machinery in Ovarian Cancer. PMID:32967233

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  Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511

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  Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application. PMID:32778133

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  Functional annotation of human long noncoding RNAs via molecular phenotyping. PMID:32718982

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  Non-coding RNAs in neuropathic pain. PMID:32587755

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  Computational Methods and Applications for Identifying Disease-Associated lncRNAs as Potential Biomarkers and Therapeutic Targets. PMID:32585624

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  New twists on long noncoding RNAs: from mobile elements to motile cancer cells. PMID:32522127

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  GC-AG Introns Features in Long Non-coding and Protein-Coding Genes Suggest Their Role in Gene Expression Regulation. PMID:32499820

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  RNAs in Brain and Heart Diseases. PMID:32466222

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  The lncRNA Fer1L4 is an adverse prognostic parameter in clear-cell renal-cell carcinoma. PMID:31965534

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  The Missing "lnc" between Genetics and Cardiac Disease. PMID:31947625

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  Long non-coding RNA linc00152 acting as a promising oncogene in cancer progression. PMID:31896236

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  Identification of Long Non-Coding RNA Expression Profiles and Co-Expression Genes in Thyroid Carcinoma Based on The Cancer Genome Atlas (TCGA) Database. PMID:31856144

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  Database Resources of the National Genomics Data Center in 2020. PMID:31702008

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  LINC00673 is activated by YY1 and promotes the proliferation of breast cancer cells via the miR-515-5p/MARK4/Hippo signaling pathway. PMID:31623640

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  The Long Non-Coding RNA Landscape of Atherosclerotic Plaques. PMID:31602567

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  The how and why of lncRNA function: An innate immune perspective. PMID:31487549

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  Long Noncoding Transcriptome in Chronic Obstructive Pulmonary Disease. PMID:31486667
• LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs PubMed citations: 70.

  70 articles citing: LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs

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  LncRNA functional annotation with improved false discovery rate achieved by disease associations. PMID:35035785

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  LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. PMID:34751395

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  Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. PMID:34718731

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  Long Non-Coding RNAs in Cardiovascular Diseases: Potential Function as Biomarkers and Therapeutic Targets of Exercise Training. PMID:34698215

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  Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912

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  Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748

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  LncRNAs and Available Databases. PMID:34160796

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  A machine learning framework that integrates multi-omics data predicts cancer-related LncRNAs. PMID:34134612

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  Investigation of lncRNA-mRNA co-expression network in ETV6-RUNX1-positive pediatric B-cell acute lymphoblastic leukemia. PMID:34101758

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  Lantern: an integrative repository of functional annotations for lncRNAs in the human genome. PMID:34039271

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  Approaches to Identify and Characterise the Post-Transcriptional Roles of lncRNAs in Cancer. PMID:33803328

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  The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis. PMID:33339309

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  Disease-Causing Mutations and Rearrangements in Long Non-coding RNA Gene Loci. PMID:33329688

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  NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801

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  LncExpDB: an expression database of human long non-coding RNAs. PMID:33045751

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  lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA. PMID:33020484

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  The Interplay between Long Noncoding RNAs and Proteins of the Epigenetic Machinery in Ovarian Cancer. PMID:32967233

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  LDNFSGB: prediction of long non-coding rna and disease association using network feature similarity and gradient boosting. PMID:32883200

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  Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application. PMID:32778133

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  Computational Methods and Applications for Identifying Disease-Associated lncRNAs as Potential Biomarkers and Therapeutic Targets. PMID:32585624

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  Long non-coding RNAs in ovarian granulosa cells. PMID:32503679

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  Online Databases and Non-coding RNAs in Cardiovascular Diseases. PMID:32285405

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  Comprehensive analysis of long non-coding RNA and mRNA expression profile in rectal cancer. PMID:32224706

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  Probing lncRNA-Protein Interactions: Data Repositories, Models, and Algorithms. PMID:32082358

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  Widespread Dysregulation of Long Noncoding Genes Associated With Fatty Acid Metabolism, Cell Division, and Immune Response Gene Networks in Xenobiotic-exposed Rat Liver. PMID:31926019

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  Mechanism of long noncoding RNAs as transcriptional regulators in cancer. PMID:31888402

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  Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs. PMID:31877126

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  Database Resources of the National Genomics Data Center in 2020. PMID:31702008

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  Expression of ZNF695 Transcript Variants in Childhood B-Cell Acute Lymphoblastic Leukemia. PMID:31527520

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  SKF-LDA: Similarity Kernel Fusion for Predicting lncRNA-Disease Association. PMID:31514111

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  A Learning-Based Method for LncRNA-Disease Association Identification Combing Similarity Information and Rotation Forest. PMID:31494494

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  Long Noncoding Transcriptome in Chronic Obstructive Pulmonary Disease. PMID:31486667

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  Gene expression in Tribolium castaneum life stages: Identifying a species-specific target for pest control applications. PMID:31198628

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  LncRNAs Regulatory Networks in Cellular Senescence. PMID:31141943

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  CRlncRC: a machine learning-based method for cancer-related long noncoding RNA identification using integrated features. PMID:30598114

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  Identifying sequence features that drive ribosomal association for lncRNA. PMID:30598103

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  LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse. PMID:30380072

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  LNCipedia 5: towards a reference set of human long non-coding RNAs. PMID:30371849

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  Database Resources of the BIG Data Center in 2019. PMID:30365034

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  LncBook: a curated knowledgebase of human long non-coding RNAs. PMID:30329098

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  RNAs as Candidate Diagnostic and Prognostic Markers of Prostate Cancer-From Cell Line Models to Liquid Biopsies. PMID:30200254

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  Carcinogenesis in prostate cancer: The role of long non-coding RNAs. PMID:30159437

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  The emergence of long non-coding RNAs in hepatocellular carcinoma: an update. PMID:30026854

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  LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs. PMID:29961817

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  Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data. PMID:29843593

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  Towards a complete map of the human long non-coding RNA transcriptome. PMID:29795125

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  The use of long non-coding RNAs as prognostic biomarkers and therapeutic targets in prostate cancer. PMID:29755696

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  lncRNA Gene Signatures for Prediction of Breast Cancer Intrinsic Subtypes and Prognosis. PMID:29373522

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  When Long Noncoding RNAs Meet Genome Editing in Pluripotent Stem Cells. PMID:29333164

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  The 2018 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:29316735

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  NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations. PMID:29220444

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  NONCODEV5: a comprehensive annotation database for long non-coding RNAs. PMID:29140524

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  Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease. PMID:29069510

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  Genome Variation Map: a data repository of genome variations in BIG Data Center. PMID:29069473

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  Database Resources of the BIG Data Center in 2018. PMID:29036542

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  LiverWiki: a wiki-based database for human liver. PMID:29029599

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  Long Non-Coding RNAs: Key Regulators of Epithelial-Mesenchymal Transition, Tumour Drug Resistance and Cancer Stem Cells. PMID:28430163

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  DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604

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  LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs. PMID:27924020

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  The BIG Data Center: from deposition to integration to translation. PMID:27899658

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  Template-Based Modeling of Protein-RNA Interactions. PMID:27662342

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  Long non-coding RNAs and complex diseases: from experimental results to computational models. PMID:27345524

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  Crowdsourcing the nodulation gene network discovery environment. PMID:27230384

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  Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585

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  deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. PMID:26590255

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  NONCODE 2016: an informative and valuable data source of long non-coding RNAs. PMID:26586799

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  Long non-coding RNA regulation of reproduction and development. PMID:26517592

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  Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. PMID:26481356

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  Long non-coding RNAs and their biological roles in plants. PMID:25936895

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  Biological databases for human research. PMID:25712261
• Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook PubMed citations: 4.

  4 articles citing: Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook

  ×

  Long Non-Coding RNAs in Cardiovascular Diseases: Potential Function as Biomarkers and Therapeutic Targets of Exercise Training. PMID:34698215

  ---

  (In)Distinctive Role of Long Non-Coding RNAs in Common and Rare Ovarian Cancers. PMID:34680193

  ---

  LncRNAs and Available Databases. PMID:34160796

  ---

  Database Resources of the National Genomics Data Center in 2020. PMID:31702008

Tags:

Tags

More detailed information about this field from each metasource. ×

biocuration

metasource: Fairsharing.org
version: None

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curated information

metasource: Fairsharing.org
version: None

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gene expression

metasource: Fairsharing.org
version: None

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gene expression data

metasource: Fairsharing.org
version: None

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gene functional annotation

metasource: Fairsharing.org
version: None

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gene-disease association

metasource: Fairsharing.org
version: None

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long non-coding rna

metasource: Fairsharing.org
version: None

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long non-coding ribonucleic acid

metasource: Fairsharing.org
version: None

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methylation

metasource: Fairsharing.org
version: None

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micro rna

metasource: Fairsharing.org
version: None

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nucleic acid sequence

metasource: Fairsharing.org
version: None

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single nucleotide polymorphism

metasource: Fairsharing.org
version: None

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functional, regulatory and non-coding rna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.628197

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pathology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.628197

---

nucleic acid structure analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:29.628197

Close

biocuration gene expression gene expression gene functional annotation gene-disease association long non-coding rna long non-coding ribonucleic acid methylation micro rna nucleic acid sequence single nucleotide polymorphism functional, regulatory and non-coding rna pathology nucleic acid structure analysis