Tag: disease

Found 181 sources
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Reactome - a curated knowledgebase of biological pathways

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database.


GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months. G ...

Human Phenotype Ontology

The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as Atrial septal defect. The HPO is currently being develope ...

Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource

MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease.

Comparative Toxicogenomics Database

Database that aims to advance understanding about how environmental exposures affect human health. It provides manually curated information about chemical–gene/protein interactions, chemical–disease and gene–disease relationships. These data are inte ...


ClinicalTrials.gov, a largest source of clinical trials data in the US, is a Web-based resource that provides patients, their family members, health care professionals, researchers, and the public with easy access to information on publicly and priva ...

DisGeNET: a knowledge base for disease genomics

DisGeNET is a discovery platform containing one of the largest collections available of genes and variants involved in human diseases. DisGeNET integrates data from expert curated repositories, GWAS catalogues, animal models, and the scientific liter ...

NCI Thesaurus

NCI Thesaurus (NCIt) provides reference terminology for many NCI and other systems. It covers vocabulary for clinical care, translational and basic research and public information.

Online Mendelian Inheritance in Man

Online Mendelian Inheritance in Man. It is an authoritative compendium of human genes and phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 15,000 genes. OMIM focuses on the relation ...

Disease Ontology

The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. Releases: https://githu ...

STrengthening the Reporting of OBservational studies in Epidemiology

STROBE was created by an international, collaborative initiative of epidemiologists, methodologists, statisticians, researchers and journal editors involved in the conduct and dissemination of observational studies, with the common aim of STrengtheni ...


ClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. ClinVar thus facilitates access to and communication about the relationships asserted between human variat ...


WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and related nematod ...


BRENDA is the main collection of enzyme functional data available to the scientific community.

The Cancer Genome Atlas

The Cancer Genome Atlas (TCGA) is a comprehensive, collaborative effort led by the National Institutes of Health (NIH) to map the genomic changes associated with specific types of tumors to improve the prevention, diagnosis and treatment of cancer. I ...

Transporter Classification Database

This freely accessible database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for clas ...

Autism Brain Imaging Data Exchange

Autism Brain Imaging Data Exchange (ABIDE) initiative has aggregated functional and structural brain imaging data collected from laboratories around the world to accelerate our understanding of the neural bases of autism (ASD Autism Spectrum Disorder ...

GeneCards: human genes, protein and diseases

GeneCards is a searchable, integrated, database of human genes that provides concise genomic, transcriptomic, genetic, proteomic, functional and disease related information on all known and predicted human genes.

Database of Protein Disorder

The Database of Protein Disorder (DisProt) is a curated database that provides information about intrinsically disordered proteins that lack fixed 3D structure in their putatively native states, either in their entirety or in part. Disordered regions ...

Rat Genome Database

The Rat Genome Database stores genetic, genomic, phenotype, and disease data generated from rat research. It provides access to corresponding data for eight other species, allowing cross-species comparison. Data curation is performed both manually an ...

Open Targets

The Open Targets Platform is a comprehensive and robust data integration for access to and visualisation of potential drug targets associated with disease. It brings together multiple data types and aims to assist users to identify and prioritise tar ...

Medical Dictionary for Regulatory Activities Terminology

MedDRA is a multilingual terminology allowing most users to operate in their native languages. MedDRA can be used to analyse individual medical events (e.g., “Influenza”) or issues involving a system, organ or etiology (e.g., infections) using its hi ...

Pathogen Host Interactions

PHI-Base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete ...

BRCA Share

BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory organizations around the world with open access to BRCA Share (formerly UMD-BRCA1) contains BRCA1 and BRCA2 genetic data. The program’s goal is to acce ...

Online Mendelian Inheritance in Man Ontology

OMIM is a comprehensive, authoritative compendium of human genes and genetic phenotypes as well as the relationship between them, that is freely available and updated daily. The OMIM ontology contains terms used within the OMIM database.

BioSamples at the European Bioinformatics Institute

The BioSamples database aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI's assay databases such as ArrayExpress, the European Nucleotide Archive or PRIDE. It provides lin ...


The UniProt Reference Clusters are three separate datasets that compress sequence space at different resolutions, achieved by merging sequences and sub-sequences that are 100% (UniRef100), >=90% (UniRef90), or >=50% (UniRef50) identical, regardless o ...

Virulence Factor Database

VFDB is an integrated and comprehensive database of virulence factors for bacterial pathogens (also including Chlamydia and Mycoplasma).

The Autism Chromosome Rearrangement Database

The Autism Chromosome Rearrangement Database is a collection of hand curated breakpoints and other genomic features, related to autism, taken from publicly available literature, databases and unpublished data.

TDR Targets

TDR Targets integrates chemical and genomic information and allows users to prioritize targets and compounds to develop and repurpose new drugs and chemical tools for human pathogens. The TDR Target Project was started in 2005 after a call for applic ...

TTD, Therapeutic Target Database

The Therapeutic Target Database provides information about therapeutic protein and nucleic acid targets, the targeted disease, pathway information and the corresponding drugs directed at each of these targets. Also included in this database are links ...


Orphanet is a unique resource, gathering and improving knowledge on rare diseases so as to improve the diagnosis, care and treatment of patients with rare diseases. Orphanet aims to provide high-quality information on rare diseases, including ...

Chemical Effects in Biological Systems

The Chemical Effects in Biological Systems (CEBS) database houses data of interest to environmental health scientists. CEBS is a public resource, and has received depositions of data from academic, industrial, and governmental laboratories.

Genomics England | PanelApp

Genomics England PanelApp is a publicly-available knowledgebase that allows virtual gene panels related to human disorders to be created, stored and queried. It includes a crowdsourcing tool that allows genes and genomic entities (short tandem repeat ...

Leiden Open Variation Database

The Leiden Open Variation Database (LOVD) provides a flexible, freely available tool for gene-centered collection and display of DNA variations. LOVD also stores patient-centered data, NGS data, and variants outside of genes.

Sequencing Initiative Suomi

The Sequencing Initiative Suomi (SISu) search engine offers a way to search for data on sequence variants in the Finnish population. It provides valuable summary data for researchers and clinicians as well as other researchers with an interest in gen ...


The GeneWeaver data and analytics website is a publically available resource for storing, curating and analyzing sets of genes from heterogeneous data sources. The system enables discovery of relationships among genes, variants, traits, drugs, enviro ...

BIG Data Center

The BIG Data Center at Beijing Institute of Genomics (BIG) of the Chinese Academy of Sciences provides a suite of database resources in support of worldwide research activities in both academia and industry. With the vast amounts of multi-omics data ...

Exome Aggregation Consortium Browser

The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. ...

International Classification of Diseases Version 10

ICD-10 is the 10th revision of the International Statistical Classification of Diseases and Related Health Problems (ICD), a medical classification list by the World Health Organization. It contains codes for diseases, signs and symptoms, abnormal fi ...

COVID-19 Data Portal

The COVID-19 Data Portal enables researchers to upload, access and analyse COVID-19 related reference data and specialist datasets. The aim of the COVID-19 Data Portal is to facilitate data sharing and analysis, and to accelerate coronavirus research ...

Biologic Specimen and Data Repository Information Coordinating Center

The goal of Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) is to facilitate and coordinate the existing activities of the NHLBI Biorepository and the Data Repository and to expand their scope and usability to the sci ...

Project Tycho: Data for Health

In 2013, we released the first version of Project Tycho containing weekly case counts for 50 notifiable conditions reported by health agencies in the United States for 50 states and 1284 cities between 1888 and 2014. Over the past four years, over 37 ...


ToxoDB is a free online resource that provides access to genomic and functional genomic data for Toxoplasma and related organisms. The resource contains over 30 fully sequenced and annotated genomes, with genomic sequence from multiple strains availa ...


SNPeffect is a database for phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect primarily focuses on the molecular characterization and annotation of disease and polymorphism variants in the human proteome. Further, SNPeffect holds pe ...


HumanMine integrates many types of data for Homo sapiens and Mus musculus. Users can run flexible queries, export results and analyse lists of data.

AceView Worm Genome

AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-align ...

PhenX Phenotypic Terms

Standard measures related to complex diseases, phenotypic traits and environmental exposures.


The MalaCards human disease database (http://www. malacards.org/) is an integrated compendium of annotated diseases mined from 68 data sources. MalaCards has a web card for each of ∼20 000 disease entries, in six global categories. It portrays a broa ...

Alliance of Genome Resources

The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse model organisms in understanding the genetic and genomic basis of human biol ...

The Chromosome 7 Annotation Project

The objective of this project is to generate the most comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications.

Clinical Measurement Ontology

The Clinical Measurement Ontology is designed to be used to standardize morphological and physiological measurement records generated from clinical and model organism research and health programs.

Coronavirus Infectious Disease Ontology

The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and ...


PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other path ...

Target Central Resource Database

TCRD is the central resource behind the Illuminating the Druggable Genome Knowledge Management Center (IDG-KMC). TCRD contains information about human targets, with special emphasis on four families of targets that are central to the NIH IDG initiati ...

Autism Knowledgebase

Autism genetics KnowledgeBase, an evidence-based knowledgebase of autism genetics.

Pathway Ontology

The goal of the Pathway Ontology is to cover all types of biological pathways, including altered and disease pathways, and to capture the relationships between them within the hierarchical structure of a Directed Acyclic Graph (DAG). The five nodes o ...

database of Disease-Gene Associations with annotated Relationships

The database of Disease-Gene Associations with annotated Relationships (eDGAR) is a database for collecting and organizing the data on gene/disease associations as derived from OMIM, Humsavar and ClinVar. For each heterogeneous or polygenic disease, ...


The SugarBind Database (SugarBindDB) was created in 2002 as part of an effort by the MITRE Corporation (http://www.mitre.org) to develop a pathogen-capture technology based on the binding of viral, bacterial and biotoxin lectins to specific glycans ( ...

The ITHANET Portal

The ITHANET Portal represents an expanding resource for clinicians and researchers dealing with haemoglobinopathies and a port of call for patients in search of professional advice. The ITHANET Portal integrates information on news, events, clinical ...

Human Ageing Genomic Resources

The Human Ageing Genomic Resources (HAGR) is a collection of databases and tools for the biology and genetics of ageing. HAGR features several databases with high-quality, manually-curated data: 1) GenAge, a database of genes associated with ageing i ...

Telomerase Database

The Telomerase Database is a Web-based tool for the study of structure, function, and evolution of the telomerase ribonucleoprotein. The objective of this database is to serve the research community by providing a comprehensive compilation of informa ...

Patient-Derived tumor Xenograft Finder

PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Patient-Derived Xenograph (PDX) data which provides a comprehensive global catalogue of PDX models available for researchers across distributed repository ...

Mitochondrial Disease Sequence Data Resource

The Mitochondrial Disease Sequence Data Resource (MSeqDR) is a centralized genome and phenome bioinformatics resource built by the mitochondrial disease community to facilitate clinical diagnosis and research investigations of individual patient phen ...

Exposure Ontology

Exposure Ontology (ExO) is designed to facilitate the centralization and integration of exposure data to inform understanding of environmental health. ExO is intended to bridge the gap between exposure science and diverse environmental health discipl ...

Orphanet Rare Diseases Ontology

Orphanet Rare Diseases Ontology (ORDO) provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.

Type 1 Diabetes Database

T1DBase focuses on two research areas in type 1 diabetes (T1D): the genetics of T1D susceptibility and beta cell biology.

MouseMine @ MGI

A database of integrated mouse data from MGI, powered by InterMine. MouseMine is member of InterMOD, a consortium of model organism databases dedicated to making cross-species data analysis easier through ongoing coordination and collaborative system ...

Human disease methylation database

The human disease methylation database, DiseaseMeth is a web based resource focused on the aberrant methylomes of human diseases. Until recently, bulks of large-scale data are avaible and are increasingly grown, from which more information can be min ...

Symptom Ontology

The symptom ontology was designed around the guiding concept of a symptom being: "A perceived change in function, sensation or appearance reported by a patient indicative of a disease". There is a close relationship between Signs and Symptoms, where ...

Common Terminology Criteria for Adverse Events

A coding system for reporting adverse events that occur in the course of cancer therapy. It was derived from the Common Toxicity Criteria (CTC) v2.0 and is maintained by the Cancer Therapy Evaluation Program (CTEP) at the National Cancer Institution ...

eyeGENE: The National Ophthalmic Genotyping and Phenotyping Network

The National Ophthalmic Disease Genotyping and Phenotyping Network (eyeGENE®) is a genomic medicine initiative created by the National Eye Institute (NEI), part of the National Institutes of Health (NIH), in partnership with clinics and laboratories ...

Influenza Life Cycle pathway map

To understand the mechanisms of influenza A viral replication and the host responses, we took the literature-based manual curation approach to construct a comprehensive influenza virus-host respoce map. The infuenza A virus (IAV) comprehensive pathwa ...

Drug Target Ontology

Drug Target Ontology (DTO) is developed as a reference for drug targets with the longer-term goal to create a community standard that will facilitate the integration of diverse drug discovery information from numerous heterogeneous resources. The fir ...

Enzyme Portal

The Enzyme Portal is for those interested in the biology of enzymes and proteins with enzymatic activity. It integrates publicly available information about enzymes, such as small-molecule chemistry, biochemical pathways and drug compounds. It contai ...


KinMutBase is a comprehensive database of disease-causing mutations in protein kinase domains. This resources provides plenty of information, namely mutation statistics and display, clickable sequences with mutations and changes to restriction enzyme ...

Ontology for General Medical Science

The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', ' ...


Allergome aims to supply information on Allergenic Molecules (Allergens) causing an IgE-mediated (allergic, atopic) disease (anaphylaxis, asthma, atopic dermatitis, conjunctivitis, rhinitis, urticaria). The resource is funded through the Allergen Dat ...


Disbiome is a database covering microbial composition changes in different kinds of diseases. Disease names, detection methods or organism names can be used as search queries giving that return information related to the experiment (related disease/b ...

International Microvillus Inclusion Disease Patient Registry

The international Microvillus Inclusion Disease Patient Registry contains anonymised data on both published and unpublished MVID patients, as well as their associated MYO5B, STX3 and STXBP2 mutations and genotypes, and clinical and molecular phenotyp ...

Ontology for Genetic Susceptibility Factor

Ontology for Genetic Susceptibility Factor (OGSF) is an application ontology to model/represent the notion of genetic susceptibility to a specific disease or an adverse event or a pathological biological process. It is developed using BFO 2.0's frame ...

Domain mapping of disease mutations

Domain mapping of disease mutations (DMDM) is a database in which each disease mutation can be displayed by its gene, protein or domain location.

Parkinson's Progression Markers Initiative

PPMI is an observational clinical study to verify progression markers in Parkinson’s disease. The study is designed to establish a comprehensive set of clinical, imaging and biosample data that will be used to define biomarkers of PD progression. Onc ...

Minimum Information About Somatic Mutation

MIASM was developed for the collection of somatic variations to promote standards for annotations of somatic variation data, and to promote data integration with other data resources. The guidelines have been published and recently updated.

International Harmonization of Nomenclature and Diagnostic criteria

Standard reference for nomenclature and diagnostic criteria in toxicologic pathology.

International Classification of Diseases Version 11

The International Classification of Diseases (ICD) was created to allow the recording, reporting and grouping of conditions and factors that influence health. It contains categories for diseases, health related conditions, and external causes of illn ...

NIDA Center on Genetics Studies

This resource stores and distributes clinical data and biomaterials (DNA samples and cell lines) available in the NIDA Genetics Initiative. This includes blood and other biospecimens along with phenotypic data.

National Addiction & HIV Data Archive Program

NAHDAP acquires, preserves and disseminates data relevant to drug addiction and HIV research. The scope of the data housed at NAHDAP covers a wide range of legal and illicit drugs (alcohol, tobacco, marijuana, cocaine, synthetic drugs, and others) an ...

Immune Tolerance Network TrialShare

The immune tolerance data management and visualization portal for studies sponsored by the Immune Tolerance Network (ITN) and collaborating investigators. Data from published studies are accessible to any user; data from current in-progress studies a ...

Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts

The Database of Kashiwa Encyclopedia for human genome mutations in Regulatory regions and their Omics contexts (DBKERO) stores transcriptome information with a catalogue of genomic variations including public SNP data and epigenome information to ena ...

Infectious Disease Ontology Core

The IDO ontologies are designed as a set of interoperable ontologies that will together provide coverage of the infectious disease domain. At the core of the set is a general Infectious Disease Ontology (IDO-Core) of entities relevant to both biomedi ...

International Classification of Diseases, Ninth Revision, Clinical Modification

The ICD is the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use. The International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM) is an ad ...

Mexican Health and Aging Study

The MHAS study is a series of questionnaires distributed in waves, the fourth of which was fielded in the Fall of 2015. Research goals include, but are not limited to the following: examination of the aging processes and its disease and disability bu ...


The need to represent knowledge about food is central to many human activities including agriculture, medicine, food safety inspection, shopping patterns, and sustainable development. FoodOn is built to interoperate with the OBO Library and to repres ...

Human Disease-Related Viral Integration Sites

Dr.VIS collects and locates human disease-related viral integration sites. So far, about 600 sites covering 5 virus organisms and 11 human diseases are available. Integration sites in Dr.VIS are located against chromesome, cytoband, gene and refseq p ...


DISNOR is a resource that uses a comprehensive collection of disease associated genes, as annotated in DisGeNET, to interrogate SIGNOR (https://signor.uniroma2.it) in order to assemble disease-specific logic networks linking disease associated genes ...

DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks

The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) results by making it easy to query and visualize disease-associated SNPs and genes in their chromosomal context.

Cerebrotendinous Xanthomatosis Ontology

The ontology represents CTX phenotypes, genetic variants, and bidirectional relationships between them though a patient model. The CTX ontology was build reusing the Human Phenotype Ontology (HPO) and the Snomed ct ontologies. A set of temporal clini ...


The SpliceDisease database provides information linking RNA splicing to human disease, including the change of the nucleotide in the sequence, the location of the mutation on the gene, the reference Pubmed ID and detailed description for the relation ...

International Classification of Diseases Version 10 - Procedure Coding System

The ICD-10 Procedure Coding System (ICD-10-PCS) is an international system of medical classification used for procedural coding. The ICD-10-PCS is a procedure classification published by the United States for classifying procedures performed in hospi ...


Satellog is a database that catalogs all pure 1-16 repeat unit satellite repeats in the human genome along with supplementary data. Satellog analyzes each pure repeat in UniGene clusters for evidence of repeat polymorphism.

Infectious Diseases Data Observatory

The Infectious Diseases Data Observatory (IDDO) assembles clinical, laboratory and epidemiological data on a collaborative platform to be shared with the research and humanitarian communities. The data are analysed to generate reliable evidence and i ...

European Centre for Disease Prevention and Control

ECDC's main role as an agency of the European Union is to strengthen Europe’s defences against communicable diseases, worked together with all EU/EEA countries in response to public health threats and emerging diseases. Part of the ECDC mission is to ...

Novartis Clinical Trial Results Database

Novartis launched the results website in 2005 becoming one of the first companies to publically post results from Phase 2b-4 interventional trials. The Novartis position evolved over time to include public disclosure of results from Phase 1- 2a inter ...

Infection Disease Ontology Malaria

An application ontology for malaria extending the infectious disease ontology (IDO). With about half a billion cases, of which nearly one million fatal ones, malaria constitutes one of the major infectious diseases worldwide. A recently revived effor ...

BEI Resource Repository

BEI Resources provides reagents, tools and information for studying Category A, B, and C priority pathogens, emerging infectious disease agents, non-pathogenic microbes and other microbiological materials of relevance to the research community.


WormQTLHD is an online scalable system for QTL exploration to service the worm community. WormQTLHD provides many publicly available datasets and welcomes submissions from other worm researchers

Pediatric Terminology

Terms associated with pediatrics, representing information related to child health and development from pre-birth through 21 years of age; contributed by the National Institute of Child Health and Human Development.

Radiology Gamuts Ontology

The Radiology Gamuts Ontology (RGO) is a knowledge resource for radiology diagnosis. RGO hosts more than 2,000 differential-diagnosis listings for imaging findings in all body systems. One can view all of the causes of an finding, then click on one o ...

Ontology of Glucose Metabolism Disorder

Ontology of Glucose Metabolism Disorder includes disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. It must be used with other two ontologies, in the case of Diabetes: the Ontology of Geographical R ...

European Medical Information Framework Catalogue

The EMIF catalogue contains extensive metadata on a number of European health data resources, such as registries, EHRs, biobanks etc., organized by a number of communities, such as EMIF-EHR, EMIF-AD, EPAD, ADVANCE, BigData@Heart, PIONEER etc. The met ...

Clinical Trials Ontology

The Clinical Trials Ontology (CTO) is also known as the Clinical Trial Ontology-Neurodegenerative Diseases (CTO-NDD), and describes clinical trials in the field of neurodegeneration. This resource has been created for use in the IMI-funded AETIONOMY ...

NICHD Data and Specimen Hub

The Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) Data and Specimen Hub (DASH) is a centralized resource that allows researchers to share and access de-identified data from studies funded by NICHD. DASH also ...

Mouse PATHology

Mouse PATHology (MPATH) ontology is a structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes. This resource was developed by the Pathology Consortium of Pathbase (www.pathbase.net).


Free knowledge database project hosted by Wikimedia and edited by volunteers.

Lens COVID-19 Datasets

The Lens is building an interactive tool for understanding the landscape of patent and research works in any domain, including human coronaviruses and COVID-19.


A database for systems biology of DNA dynamics during the cell life.

Adverse Drug Reaction Markup Language

The Adverse Drug Reaction Markup Language (EU-ADR ML) was created to as part of the EU-ADR project. The ultimate aim of this project was to develop an innovative approach to the early detection of adverse drug reactions. The status of this format is ...

Parkinson's Disease Ontology

The Parkinson's Disease Ontology (PDO) was created to represent and model the Parkinson's Disease knowledge domain. This ontology with a covers major biomedical concepts from molecular to clinical features of the disease as well as the different view ...

Cancer Research and Management ACGT Master Ontology

The intention of the ACGT Master Ontology (MO) is to represent the domain of cancer research and management, with special emphasis on mammary carcinoma (“breast cancer”), Wilms’ tumor (nephroblastoma) and rhabdoid tumor.

MUGEN mouse database

The MUGEN mouse database (MMdb) is a database of murine models of immune processes and immunological diseases.


miRwayDB provides information on experimentally validated microRNA-pathway associations for pathophysiological conditions. Information includes disease condition, associated microRNAs, experimental sample types, regulation pattern (up/down), and path ...

HIV Drug Interactions

Around 37 million individuals are living worldwide with HIV and although advances in therapy have yielded effective regimens, individual antiretroviral drugs are amongst the most therapeutically risky for drug-drug interactions (DDI) presenting signi ...


PhenoDis is a manually annotated database providing symptomatic, genetic and imprinting information about rare cardiac diseases. PhenoDis is primarily concerned with the assignment of clinical symptoms to rare diseases using the biomedical literature ...

Editome Disease Knowledgebase

The Editome Disease Knowledgebase (EDK) is an integrated knowledgebase of RNA editome-disease associations manually curated from published literature. It stores information on RNA editing events in mRNA, miRNA, lncRNA, viruses and RNA editing enzymes ...

Vectorborne Disease Surveillance System

VectorSurv was formed as a partnership of the Mosquito and Vector Control Association of California, representing more than 60 local mosquito and vector control agencies in California; the California Department of Public Health; and the Davis Arbovir ...

COPD Ontology

The COPD Ontology is a biomedical ontology used for modelling concepts associated to chronic obstructive pulmonary disease in routine clinical databases. There are a no plans to revise this ontology in the near future and therefore the version shown ...


STOREDB provides infrastructure for sharing data and resources in radiation biology and epidemiology. It is a platform for the archiving and sharing of primary data and outputs of all kinds, including epidemiological and experimental data, from resea ...

Computer Retrieval of Information on Scientific Projects Thesaurus

CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains.


The RAMEDIS system is a platform independent, web-based information system for rare metabolic diseases based on filed case reports. It was developed in close cooperation with clinical partners to allow them to collect information on rare metabolic di ...

Neglected Tropical Disease Ontology

The Neglected Tropical Disease Ontology (NTDO) models Neglected Tropical Diseases (NTD), a specific set of diseases which persist among marginalized populations of the developing world. The NTDO focuses on vector-borne disease control as the transmis ...

Therapeutically Relevant Multiple Pathways Database

The Therapeutically Relevant Multiple Pathways Database is designed to provide information about such multiple pathways and related therapeutic targets described in the literatures, the targeted disease conditions, and the corresponding drugs/ligands ...

Human Diseases Thesaurus

The Human Diseases Thesaurus describes human diseases, and is part of the Medicine vocabulary used from 1972 to 2015 for indexing bibliographical records in the now-archived PASCAL database (http://pascal-francis.inist.fr/). It is available in Englis ...

International Classification of Diseases for Oncology, 3rd Edition

The International Classification of Diseases for Oncology, 3rd Edition (ICD-O-3) is used principally in tumour or cancer registries for coding the site (topography) and the histology (morphology) of neoplasms, usually obtained from a pathology report ...

International Classification of Diseases, Tenth Revision, Clinical Modification

The International Classification of Diseases, Tenth Revision, Clinical Modification (ICD-10-CM) is a morbidity classification for classifying diagnoses and reason for visits in all American health care settings. The ICD-10-CM is based on the ICD-10, ...

AD Knowledge Portal

The AD Knowledge Portal is a platform for accessing data, analyses, and tools that the National Institute on Aging’s (NIA) Alzheimer's Disease Translational Research Program generates through several initiatives. The program encourages open-science c ...

AIP Mutation Database

The AIP Mutation Database collects variants (both pathogenic, non-pathogenic and with unknown significance) related to pituitary adenoma predisposition (PAP) and to familial isolated pituitary adenoma (FIPA) syndromes and their clinical information i ...

HEP Drug Interactions

Currently 170 million people worldwide are infected with the hepatitis C virus (HCV) and >300 million with hepatitis B (HBV). Although interferon-free combination direct acting antivirals (DAAs) regimens have improved tolerability and efficacy for HC ...

EORTC clinical trials

European Organisation for Research and Treatment of Cancer database of clinical trials.

Global Project Management System Tuberculosis Transportal

Global Project Management System Tuberculosis Transportal (GPMS TB Transportal) is a digital platform piloting TB surveillance in the 4 districts of Karnataka. It is an integrated dashboard that contains the information of all the TB control programs ...

Wheat Trait Ontology

Wheat Trait Ontology is an ontology of wheat traits and environmental factors that affect these traits. They include resistance to disease, development, nutrition, bread quality, etc. Environmental factors include biotic and abiotic factors. An alter ...

MedlinePlus Health Topics

This resource provides information on the symptoms, causes, treatment and prevention for a wide range of diseases, illnesses, health conditions and wellness issues. MedlinePlus health topics are regularly reviewed, and links are updated daily.

Epilepsy Ontology

Ontology about the epilepsy domain and epileptic seizures. Based on the diagnosis proposed by the International League Against Epilepsy (ILAE).

Pharmacovigilance Ontology

The pharmacovigilance ontology connects known facts on drugs, disease, ADEs, and their molecular mechanisms.

Animal Health Ontology for Livestock

The AHOL ontology (Animal Health Ontology for Livestock) was built collaboratively within a network of experts in the livestock health field, in order to describe production diseases. Its structure is based on the type of disease: communicable, non c ...


Orphadata provides the scientific community with comprehensive, quality datasets related to rare diseases and orphan drugs from the Orphanet knowledge base, in reusable formats.

Type 2 Diabetes Knowledge Portal

The Type 2 Diabetes Knowledge Portal is an open-access resource for human genetic information on type 2 diabetes (T2D). It is a central repository for data from large genomic studies that identify DNA variants whose presence is linked to altered risk ...

Monarch Initiative

Human disease-related phenotypes in model organisms

Sleep Domain Ontology

An application ontology for the domain of Sleep Medicine.


Genomics of fungal, oomycete and bacterial phytopathogens

Breast Cancer Grading Ontology

Breast Cancer Grading Ontology assigns a grade to a tumor starting from the 3 criteria of the NGS.


BenchSci is a free platform designed to help biomedical research scientists quickly and easily identify validated antibodies from publications. Using various filters including techniques, tissue, cell lines, and more, scientists can find out publishe ...

The Lafora Database

A curated database of mutations and polymorphisms associated with Lafora Progressive Myoclonus Epilepsy. The Lafora progressive myoclonus epilepsy mutation and polymorphism database is a collection of hand curated mutation and polymorphism data for t ...

Ontology of Language Disorder in Autism

Language terms used in the domain of autism. The language terms were obtained via text mining and automatic retrieval of terms from the corpus of PubMed abstracts.

BCCM/ITM Mycobacteria Collection

BCCM/ITM harbours one the largest and most diverse collections of well-documented mycobacteria worldwide, including the TDR TB-Strain bank. BCCM/ITM is hosted by and sharing its research interests with the Mycobacteriology Unit at the Institute of Tr ...

Drug Database for Inborn Errors of Metabolism Ontology

DDIEM Ontology for the Drug Database for Inborn Errors of Metabolism. The DDIEM database is a database of therapeutic strategies and treatments for inborn errors of metabolism. These strategies are classified by mechanism and outcome using the DDIEM ...

BCCM/IHEM Fungi Collection: Human & Animal Health

BCCM/IHEM is a fungal culture collection specialized in medical and veterinary isolates. About 15.000 strains are available from all over the world: yeasts and filamentous fungi, pathogens, allergenic species, strains producing mycotoxins, reference ...

4 Country ChrOnic Respiratory Disease study: PILOT PHASE, Islamabad

We collected clinical data of two groups of patients. We initially recruited 100 participants and then collected further data of a subset of 43 of these participants. Details are given in the description.

National Cardiac Audit Programme - Congenital Heart Disease Audit (NCHDA)

Continuous record-level data from all centres for paediatric & congenital cardiac surgery /interventional procedures/electrophysiology in the UK and Republic of Ireland. Includes mortality, post-precedural complications, & antenatal diagnostic screen ...

Central England Haemato-oncology and oncology Research Biobank (CEHRB)

Collection of samples and data across the following diseases: Leukaemia, disease The Central England Haemato-Oncology and oncology Research BioBank (CEHRB) predominantly stores excess material from haemato-oncology and oncology samples referred for d ...

UK CLL Trials Biobank

Collection of samples and data across the following diseases: Leukaemia, disease, Malignant lymphoma (disorder) A collection of Chronic Lymphocytic Leukaemia samples from patients on clinical trials. Includes the trials; AdMIRE, ARCTIC, CHOP-OR, CLL2 ...

Cancer Group CTR Cardiff trials

Collection of samples and data across the following diseases: Leukaemia, disease, Malignant tumour of breast, Malignant tumour of colon, Malignant tumour of lung, Malignant tumour of oesophagus, Malignant tumour of pancreas Centre for Trials Research ...

UKALL14 Trial

Collection of samples and data across the following diseases: Leukaemia, disease A randomized trial for adults with newly diagnosed acute lymphoblastic leukaemia. Multisite, randomised controlled trial, recruiting 811 patients over 7.5 years. Samples ...

Bloodwise Childhood Leukaemia Cell Bank

Collection of samples and data across the following diseases: Fit and well, Leukaemia, disease The Bloodwise Childhood Leukaemia Cell Bank is a national collection of samples from children and young people with paediatric haematological malignancies. ...

Daisy Tumour Bank

Collection of samples and data across the following diseases: Leukaemia, disease, Malignant tumour of rectum (disorder),Malignant tumour of colon, Malignant tumour of oesophagus, Mesothelioma (malignant, clinical disorder) The Daisy Tumour Bank (DTB) ...

Cambridge Blood and Stem Cell Biobank

Collection of samples and data across the following diseases: Fit and well, Hematologic neoplasm (disorder),Leukaemia, disease Cambridge Blood and Stem Cell Biobank collects and curates blood and blood-product derived samples from normal individuals ...

Animal Diseases Ontology

The Animal Diseases Ontology (ANDO) includes information on diseases of production animals and their related pathogenic agents in French and English.

Parkinson Disease Mutation Database

The Parkinson disease Mutation Database (PDmutDB) aims at collecting all known mutations in the genes related to Parkinson disease (PD). Mutations are collected from the literature and from presentations at scientific meetings. In addition, mutations ...

Semantic reference model for making rare disease resources linkable

A subset of ontology classes and properties for connecting rare disease data in the context of creating FAIR rare disease data 'at the source'. The aim is to facilitate data annotation at the source in order to enable questions and analysis across ra ...

BIOchemical PathwaY DataBase

BIOPYDB is a manually-curated database of human cell specific biochemical pathway data. The information within BIOPYDB is primarily extracted from published scientific literature and a selection of databases. The reconstructed pathways contain inform ...

Growing Up Today Study

<<<!!!<<< The 2019-2020 Questionnaire is no longer live. >>>!!!>>>

Breast tissue cell lines

List of cell lines derived from breast tissue, both normal and pathological. The ontology in built in OWL with cross relation to classes- genetic variation, pathological condition, genes, chemicals and drugs.


Wiki-Pi is a wiki resource centered on human protein-protein interactions. Wiki-Pi's intuitive search functionality allows you to retrieve and discover interactions effectively.

LifeMap Discovery

LifeMap Discovery® is a compendium of embryonic development for stem cell research and regenerative medicine, constructed by integrating extensive molecular, cellular, anatomical and medical data curated from scientific literature and high-throughput ...


The ClinicalCodes repository aims to hold code lists for all published electronic medical record studies, irrespective of code type (e.g. Read, ICD9-10, SNOMED) and database (CPRD, QResearch, THIN etc.). Once deposited, code lists will be freely avai ...

Breast Cancer Surveillance Consortium

The Breast Cancer Surveillance Consortium (BCSC) is a research resource for studies designed to assess the delivery and quality of breast cancer screening and related patient outcomes in the United States. The BCSC is a collaborative network of seven ...

Canadian Institute for Health Information Repository

The Canadian Institute for Health Information (CIHI) provides comparable and actionable data and information that are used to accelerate improvements in health care, health system performance and population health across Canada.

Cystic Fibrosis Mutation Database

The Cystic Fibrosis Mutation Database (CFTR1) was initiated by the Cystic Fibrosis Genetic Analysis Consortium in 1989 to increase and facilitate communications among CF researchers, and is maintained by the Cystic Fibrosis Centre at the Hospital for ...

Cancer Drug Interactions

Nearly 60% of patients undergoing cancer treatment are estimated to have had at least one potential drug-drug interaction; for patients receiving oral anticancer therapy, up to 50% have been reported to experience a potential drug-drug interaction, w ...

Pediatric MRI Data Repository

!!! >>> integrated in https://www.re3data.org/repository/r3d100012653 >>> !!! This site provides information about the NIH MRI Study of Normal Brain Development (Pediatric MRI Study) and resulting Pediatric MRI Data Repository. This website serves as ...

Chesapeake Bay Data Hub

This interface provides access to several types of data related to the Chesapeake Bay. Bay Program databases can be queried based upon user-defined inputs such as geographic region and date range. Each query results in a downloadable, tab- or comma-d ...

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