GenBank
Names
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GenBank
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: GenBank; editing status 2021-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D31X last accessed: 2022-11-04
GenBank nucleotide sequence database
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.291264
genbank
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.291264
Names
More detailed information about this field from each metasource.
GenBank
metasource: Fairsharing.orgversion: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: GenBank; editing status 2021-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D31X last accessed: 2022-11-04
GenBank nucleotide sequence database
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.291264
genbank
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.291264
Other names: GenBank nucleotide sequence database, genbank
Names
More detailed information about this field from each metasource.
GenBank
metasource: Fairsharing.orgversion: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: GenBank; editing status 2021-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D31X last accessed: 2022-11-04
GenBank nucleotide sequence database
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.291264
genbank
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.291264
GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months. GenBank growth statistics for both the traditional GenBank divisions and the WGS division are available from each release. GenBank is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.
Description
More detailed information about this field from each metasource.
GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months. GenBank growth statistics for both the traditional GenBank divisions and the WGS division are available from each release. GenBank is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.
metasource: Fairsharing.orgversion: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank is a comprehensive database that contains publicly available nucleotide sequences for 400 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole genome shotgun and environmental sampling projects. Most submissions are made using BankIt, the National Center for Biotechnology Information (NCBI) Submission Portal, or the tool tbl2asn. GenBank staff assign accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through the NCBI Nucleotide database, which links to related information such as taxonomy, genomes, protein sequences and structures, and biomedical journal literature in PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. Recent updates include changes to sequence identifiers, submission wizards for 16S and Influenza sequences, and an Identical Protein Groups resource.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
GenBank® is a comprehensive database that contains publicly available nucleotide sequences for almost 260 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP.
metasource: re3data.orgversion: re3data.org: GenBank; editing status 2021-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D31X last accessed: 2022-11-04
A comprehensive database of public nucleotide sequences for more than 300 000 organisms named, from small and large-scale sequencing projects. Data exchange with the European Molecular Biology Laboratory Nucleotide Sequence Database in Europe and the DNA Data Bank of Japan ensures worldwide coverage.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.291264
Webpage:
https://www.ncbi.nlm.nih.gov/genbank/Webpage
More detailed information about this field from each metasource.
https://www.ncbi.nlm.nih.gov/genbank/
metasource: Fairsharing.orgversion: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: GenBank; editing status 2021-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D31X last accessed: 2022-11-04
http://www.ncbi.nlm.nih.gov/genbank/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://www.ncbi.nlm.nih.gov/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.291264
Licence:
Name: NCBI Website and Data Usage Policies and DisclaimersLicence name
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NCBI Website and Data Usage Policies and Disclaimers
metasource: Fairsharing.orgversion: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Copyrights
metasource: re3data.orgversion: re3data.org: GenBank; editing status 2021-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D31X last accessed: 2022-11-04
Licence URL
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https://www.ncbi.nlm.nih.gov/home/about/policies/
metasource: Fairsharing.orgversion: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: GenBank; editing status 2021-12-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D31X last accessed: 2022-11-04
Publications:
(14)
Publications
More detailed information about this field from each metasource.
GenBank
PMID: 23193287
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 26590407
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 18073190
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 18940867
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 22144687
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 21071399
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 29140468
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 25414350
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 24217914
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 27899564
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 30365038
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 31665464
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
https://doi.org/10.1093/nar/gkz956
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://dx.doi.org/10.1093/nar/gks1195
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.291264
Publications
More detailed information about this field from each metasource.
GenBank
PMID: 23193287
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 26590407
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 18073190
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 18940867
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 22144687
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 21071399
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 29140468
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 25414350
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 24217914
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 27899564
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 30365038
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
GenBank
PMID: 31665464
metasource: Fairsharing.org
version: FAIRsharing.org: GenBank; GenBank; DOI: https://doi.org/10.25504/FAIRsharing.9kahy4; Last edited: April 23, 2020, 1:54 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
https://doi.org/10.1093/nar/gkz956
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://dx.doi.org/10.1093/nar/gks1195
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.291264
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GenBank
PubMed citations: 957.
957 articles citing: GenBank
Isolation and characterization of phage display-derived scFv antibodies against human parechovirus 1 VP0 protein. PMID:35927325
Distribution and phylogeography of the genus Mattirolomyces with a focus on the Asian M. terfezioides haplotypes. PMID:35910764
Human Coronavirus Spike Protein Based Multi-Epitope Vaccine against COVID-19 and Potential Future Zoonotic Coronaviruses by Using Immunoinformatic Approaches. PMID:35891314
Species Diversity, Habitat Distribution, and Blood Meal Analysis of Haematophagous Dipterans Collected by CDC-UV Light Traps in the Dominican Republic. PMID:35889959
In Silico Screening and Development of Microsatellite Markers for Genetic Analysis in Perca fluviatilis. PMID:35883356
Next generation biosecurity: Towards genome based identification to prevent spread of agronomic pests and pathogens using nanopore sequencing. PMID:35877652
Dietary characterization of the endangered salt marsh harvest mouse and sympatric rodents using DNA metabarcoding. PMID:35866012
Mitochondrial diversity and inter-specific phylogeny among dolphins of the genus Stenella in the Southwest Atlantic Ocean. PMID:35834534
European primary datasets of alien bacteria and viruses. PMID:35831307
NRJ Media as the Gold-Standard Arcobacter-Specific Detection System: Applications in Poultry Testing. PMID:35801110
Genetic and Antigenic Characterization of an Expanding H3 Influenza A Virus Clade in U.S. Swine Visualized by Nextstrain. PMID:35766502
Genomic Characterization of Bacillus safensis Isolated from Mine Tailings in Peru and Evaluation of Its Cyanide-Degrading Enzyme CynD. PMID:35762789
Phage-bacterial contig association prediction with a convolutional neural network. PMID:35758806
Population Genetic Structure of Marine Leech, Pterobdella arugamensis in Indo-West Pacific Region. PMID:35741718
Comparative analysis of machine learning algorithms on the microbial strain-specific AMP prediction. PMID:35724561
Linked-Read Sequencing of Eight Falcons Reveals a Unique Genomic Architecture in Flux. PMID:35700227
Fungal association and root morphology shift stepwise during ontogenesis of orchid Cremastra appendiculata towards autotrophic nutrition. PMID:35673361
Protposer: The web server that readily proposes protein stabilizing mutations with high PPV. PMID:35664235
Whales from space dataset, an annotated satellite image dataset of whales for training machine learning models. PMID:35624202
Complete genome sequence of a novel bipartite begomovirus infecting the legume weed Macroptilium erythroloma. PMID:35562613
Uncovering the genetic diversity of Giardia intestinalis in isolates from outbreaks in New Zealand. PMID:35509037
Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal. PMID:35478717
Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia. PMID:35477739
Comprehensive human amniotic fluid metagenomics supports the sterile womb hypothesis. PMID:35477737
Vascular function of the T3/modern clade WUSCHEL-Related HOMEOBOX transcription factor genes predate apical meristem-maintenance function. PMID:35462532
Miniature Inverted-Repeat Transposable Elements (MITEs) in the Two Lepidopteran Genomes of Helicoverpa armigera and Helicoverpa zea. PMID:35447755
PPA-GCN: A Efficient GCN Framework for Prokaryotic Pathways Assignment. PMID:35444686
The Evolution of Cytogenetic Traits in Cuscuta (Convolvulaceae), the Genus With the Most Diverse Chromosomes in Angiosperms. PMID:35432411
The evolution of coordination: a phylogenetic meta-analysis and systematic review. PMID:35425632
Prediction of Prophages and Their Host Ranges in Pathogenic and Commensal Neisseria Species. PMID:35418239
Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community. PMID:35417481
Sorting out the plants responsible for a contamination with pyrrolizidine alkaloids in spice seeds by means of LC-MS/MS and DNA barcoding: Proof of principle with cumin and anise spice seeds. PMID:35415703
Mycorrhized Wheat Plants and Nitrogen Assimilation in Coexistence and Antagonism with Spontaneous Colonization of Pathogenic and Saprophytic Fungi in a Soil of Low Fertility. PMID:35406904
Diagnosis and Surveillance of Neonatal Infections by Metagenomic Next-Generation Sequencing. PMID:35401464
A novel plant lectin, NTL-125, interferes with SARS-CoV-2 interaction with hACE2. PMID:35398454
A large-scale systematic survey reveals recurring molecular features of public antibody responses to SARS-CoV-2. PMID:35397794
A methanolic extract of Zanthoxylum bungeanum modulates secondary metabolism regulator genes in Aspergillus flavus and shuts down aflatoxin production. PMID:35397670
Statistical modeling of SARS-CoV-2 substitution processes: predicting the next variant. PMID:35351970
In Silico Methods for the Identification of Viral-Derived Small Interfering RNAs (vsiRNAs) and Their Application in Plant Genomics. PMID:35325416
Genome Sequence of a Beak and Feather Disease Virus from an Unusual Novel Host, Australian Boobook Owl (Ninox boobook). PMID:35319253
Mining the Flavoproteome of Brucella ovis, the Brucellosis Causing Agent in Ovis aries. PMID:35315701
Independent Size Expansions and Intron Proliferation in Red Algal Plastid and Mitochondrial Genomes. PMID:35289373
A mobile restriction-modification system provides phage defence and resolves an epigenetic conflict with an antagonistic endonuclease. PMID:35286398
Complexity of malaria transmission dynamics in the Brazilian Atlantic Forest. PMID:35284897
A novel parvovirus (family Parvoviridae) in a freshwater fish, zander (Sander lucioperca). PMID:35278130
Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM. PMID:35241674
Forgotten Actors: Glycoside Hydrolases During Elongation Growth of Maize Primary Root. PMID:35222452
Integrated Genomic and Metabolomic Analysis Illuminates Key Secreted Metabolites Produced by the Novel Endophyte Bacillus halotolerans Cal.l.30 Involved in Diverse Biological Control Activities. PMID:35208854
Analysis of Genomic Alternative Splicing Patterns in Rat under Heat Stress Based on RNA-Seq Data. PMID:35205403
New CTX-M Group Conferring β-Lactam Resistance: A Compendium of Phylogenetic Insights from Biochemical, Molecular, and Structural Biology. PMID:35205122
Top-down stepwise refinement identifies coding and noncoding RNA-associated epigenetic regulatory maps in malignant glioma. PMID:35194922
Identification and characterization of L- and D-lactate-inducible systems from Escherichia coli MG1655, Cupriavidus necator H16 and Pseudomonas species. PMID:35136142
Improved 93-11 Genome and Time-Course Transcriptome Expand Resources for Rice Genomics. PMID:35126409
Comparison of glycoside hydrolase family 3 β-xylosidases from basidiomycetes and ascomycetes reveals evolutionarily distinct xylan degradation systems. PMID:35120929
SPSED: A Signal Peptide Secretion Efficiency Database. PMID:35118058
Genome-wide annotation of protein-coding genes in pig. PMID:35073880
Temporal dynamics of freshwater planktonic parasites inferred using a DNA metabarcoding time-series. PMID:35060465
Massively parallel phenotyping of coding variants in cancer with Perturb-seq. PMID:35058622
Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle. PMID:35039029
Differential expression profiles of microRNAs in musk gland of unmated and mated forest musk deer (Moschus berezovskii). PMID:35036174
Assessing the drug resistance profiles of oral probiotic lozenges. PMID:35024089
Dynamic genetic differentiation drives the widespread structural and functional convergent evolution of snake venom proteinaceous toxins. PMID:34996434
The evolution of insect visual opsin genes with specific consideration of the influence of ocelli and life history traits. PMID:34996358
IDbSV: An Open-Access Repository for Monitoring SARS-CoV-2 Variations and Evolution. PMID:34966754
Molecular and Phylogenetic Characterisation of a Highly Divergent Novel Parvovirus (Psittaciform Chaphamaparvovirus 2) in Australian Neophema Parrots. PMID:34959514
Genome Mining of Pseudomonas Species: Diversity and Evolution of Metabolic and Biosynthetic Potential. PMID:34946606
The mitochondrial copper chaperone COX11 has an additional role in cellular redox homeostasis. PMID:34919594
Phytoplankton settling quality has a subtle but significant effect on sediment microeukaryotic and bacterial communities. PMID:34911983
Navigating Multi-Scale Cancer Systems Biology Towards Model-Driven Clinical Oncology and Its Applications in Personalized Therapeutics. PMID:34900668
Monitoring newt communities in urban area using eDNA metabarcoding. PMID:34900410
Collapse of the mammoth-steppe in central Yukon as revealed by ancient environmental DNA. PMID:34880234
Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2. PMID:34876022
A large-scale systematic survey of SARS-CoV-2 antibodies reveals recurring molecular features. PMID:34873599
In-Silico Vaccine Design Based on a Novel Vaccine Candidate Against Infections Caused by Acinetobacter baumannii. PMID:34873398
Manganese transport by Streptococcus sanguinis in acidic conditions and its impact on growth in vitro and in vivo. PMID:34862691
Predicting the Structure of a Viroid : Structure, Structure Distribution, Consensus Structure, and Structure Drawing. PMID:34845705
"Shining a LAMP" (Loop-Mediated Isothermal Amplification) on the Molecular Detection of Phytopathogens Phytophthora spp. and Phytophthora cactorum in Strawberry Fields. PMID:34832609
Multi-Omics Analysis Reveals Anti-Staphylococcus aureus Activity of Actinomycin D Originating from Streptomyces parvulus. PMID:34830114
Mutational Analysis and mtDNA Haplogroup Characterization in Three Serbian Cases of Mitochondrial Encephalomyopathies and Literature Review. PMID:34829316
Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions. PMID:34827630
Listeria monocytogenes faecal carriage is common and depends on the gut microbiota. PMID:34819495
Using artificial intelligence techniques for COVID-19 genome analysis. PMID:34764587
Dry Fermented Sausages with Total Replacement of Fat by Extra Virgin Olive Oil Emulsion and Indigenous Lactic Acid Bacteria. PMID:34759759
The emerging role of open technologies for community-based improvement of cryopreservation and quality management for repository development in aquatic species. PMID:34750024
Parasitic nematode fatty acid- and retinol-binding proteins compromise host immunity by interfering with host lipid signaling pathways. PMID:34714893
Glycan Recognition in Human Norovirus Infections. PMID:34696500
A Bipartite Geminivirus with a Highly Divergent Genomic Organization Identified in Olive Trees May Represent a Novel Evolutionary Direction in the Family Geminiviridae. PMID:34696465
The Expression Regulatory Network in the Lung Tissue of Tibetan Pigs Provides Insight Into Hypoxia-Sensitive Pathways in High-Altitude Hypoxia. PMID:34691141
Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020. PMID:34650062
Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy. PMID:34648558
The Neighborhood of the Spike Gene Is a Hotspot for Modular Intertypic Homologous and Nonhomologous Recombination in Coronavirus Genomes. PMID:34638137
Lipid biomarkers: molecular tools for illuminating the history of microbial life. PMID:34635851
Identification and Antibiotic Profiling of Wohlfahrtiimonas chitiniclastica, an Underestimated Human Pathogen. PMID:34630346
Genomic Characterisation of a Highly Divergent Siadenovirus (Psittacine Siadenovirus F) from the Critically Endangered Orange-Bellied Parrot (Neophema chrysogaster). PMID:34578295
A workflow for the relative quantification of multiple fish species from oceanic water samples using environmental DNA (eDNA) to support large-scale fishery surveys. PMID:34570816
Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska. PMID:34485052
Establishing a Global Standard for Wearable Devices in Sport and Exercise Medicine: Perspectives from Academic and Industry Stakeholders. PMID:34468950
Phylogenetic reconstruction of the initial stages of the spread of the SARS-CoV-2 virus in the Eurasian and American continents by analyzing genomic data. PMID:34454972
Tissue distribution of stem cell factor in adults. PMID:34450114
Drug Discovery of Spinal Muscular Atrophy (SMA) from the Computational Perspective: A Comprehensive Review. PMID:34445667
Identification of Potential Probiotics Producing Bacteriocins Active against Listeria monocytogenes by a Combination of Screening Tools. PMID:34445321
Endemic Jeffrey Pine Beetle Associates: Beetle/Mite Fungal Dissemination Strategies and Interactions That May Influence Beetle Population Levels. PMID:34442720
Native Yeasts and Lactic Acid Bacteria Isolated from Spontaneous Fermentation of Seven Grape Cultivars from the Maule Region (Chile). PMID:34441515
Meta-Analysis of Mitochondrial DNA Control Region Diversity to Shed Light on Phylogenetic Relationship and Demographic History of African Sheep (Ovis aries) Breeds. PMID:34439994
Reevaluating claims of ecological speciation in Halichoeres bivittatus. PMID:34429932
Impact of coronavirus disease 2019 on respiratory surveillance and explanation of high detection rate of human rhinovirus during the pandemic in the Republic of Korea. PMID:34405546
Genomic Surveillance and Phylodynamic Analyses Reveal the Emergence of Novel Mutations and Co-mutation Patterns Within SARS-CoV-2 Variants Prevalent in India. PMID:34394051
Cuban history of CRF19 recombinant subtype of HIV-1. PMID:34370795
Using agricultural metadata: a novel investigation of trends in sowing date in on-farm research trials using the Online Farm Trials database. PMID:34354820
ACO2 clinicobiological dataset with extensive phenotype ontology annotation. PMID:34354088
Geometric morphometric analysis of spore shapes improves identification of fungi. PMID:34351916
A Personalized Therapeutics Approach Using an In Silico Drosophila Patient Model Reveals Optimal Chemo- and Targeted Therapy Combinations for Colorectal Cancer. PMID:34336681
Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups. PMID:34331018
"Core" RxLR effectors in phytopathogenic oomycetes: A promising way to breeding for durable resistance in plants? PMID:34304703
A Framework for Investigating Rules of Life by Establishing Zones of Influence. PMID:34297089
Ongoing global and regional adaptive evolution of SARS-CoV-2. PMID:34292871
Free Energy Landscapes from SARS-CoV-2 Spike Glycoprotein Simulations Suggest that RBD Opening Can Be Modulated via Interactions in an Allosteric Pocket. PMID:34270232
Novel picornavirus (family Picornaviridae) from freshwater fishes (Perca fluviatilis, Sander lucioperca, and Ameiurus melas) in Hungary. PMID:34255185
Immune response dynamics in COVID-19 patients to SARS-CoV-2 and other human coronaviruses. PMID:34242356
Experimental infection of Asian house geckos with Enterococcus lacertideformus demonstrates multiple disease transmission routes and the in-vivo efficacy of antibiotics. PMID:34226601
Bacterial Protein Interaction Networks: Connectivity is Ruled by Gene Conservation, Essentiality and Function. PMID:34220298
MicroRNA Omics Analysis of Camellia sinesis Pollen Tubes in Response to Low-Temperature and Nitric Oxide. PMID:34201466
Challenges for Cryptosporidium Population Studies. PMID:34200631
Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophylla. PMID:34194446
Cryptic species and hidden ecological interactions of halictine bees along an elevational gradient. PMID:34188845
Diversity and substrate-specificity of green algae and other micro-eukaryotes colonizing amphibian clutches in Germany, revealed by DNA metabarcoding. PMID:34181110
Divide-and-conquer: machine-learning integrates mammalian and viral traits with network features to predict virus-mammal associations. PMID:34172731
Rhizobia and endophytic bacteria isolated from rainforest fragments within an iron ore mining site of the Eastern Brazilian Amazon. PMID:34142357
A computational workflow for the detection of candidate diagnostic biomarkers of Kawasaki disease using time-series gene expression data. PMID:34136104
Evolutionary and Ecological Drivers Shape the Emergence and Extinction of Foot-and-Mouth Disease Virus Lineages. PMID:34115138
Bioinformatics Structural and Phylogenetic Characterization of Entamoeba histolytica Alcohol Dehydrogenase 2 (EhADH2). PMID:34103738
Identification of Stable Reference Genes for Toxicogenomic and Gene Expression Analysis. PMID:34097262
An Unsupervised Algorithm for Host Identification in Flaviviruses. PMID:34069049
Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). PMID:34065100
Management After Windstorm Affects the Composition of Ectomycorrhizal Symbionts of Regenerating Trees but Not Their Mycorrhizal Networks. PMID:34054889
In silico characterization of putative gene homologues involved in somatic embryogenesis suggests that some conifer species may lack LEC2, one of the key regulators of initiation of the process. PMID:34039265
On the evolution of chaperones and cochaperones and the expansion of proteomes across the Tree of Life. PMID:34001607
Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall's sheep. PMID:33962681
Extreme Morphology, Functional Trade-offs, and Evolutionary Dynamics in a Clade of Open-Ocean Fishes (Perciformes: Bramidae). PMID:33937628
Peptide 1018 inhibits swarming and influences Anr-regulated gene expression downstream of the stringent stress response in Pseudomonas aeruginosa. PMID:33930077
The First Insight into Polyhydroxyalkanoates Accumulation in Multi-Extremophilic Rubrobacter xylanophilus and Rubrobacter spartanus. PMID:33923216
Molecular Typing of Listeria monocytogenes IVb Serogroup Isolated from Food and Food Production Environments in Poland. PMID:33921133
Potential mammalian species for investigating the past connections between Amazonia and the Atlantic Forest. PMID:33836018
Aedes aegypti dyspepsia encodes a novel member of the SLC16 family of transporters and is critical for reproductive fitness. PMID:33826624
Codon usage bias and environmental adaptation in microbial organisms. PMID:33818631
Nanopore sequencing and its application to the study of microbial communities. PMID:33815688
Dengue-2 and Guadeloupe Mosquito Virus RNA Detected in Aedes (Stegomyia) spp. Collected in a Vehicle Impound Yard in Santo André, SP, Brazil. PMID:33809477
Complete Whole Genome Sequences of Escherichia coli Surrogate Strains and Comparison of Sequence Methods with Application to the Food Industry. PMID:33809423
Screening of Natural Compounds as P-Glycoprotein Inhibitors against Multidrug Resistance. PMID:33808505
Wastewaters, with or without Hospital Contribution, Harbour MDR, Carbapenemase-Producing, but Not Hypervirulent Klebsiella pneumoniae. PMID:33805405
Effective rational humanization of a PASylated anti-galectin-3 Fab for the sensitive PET imaging of thyroid cancer in vivo. PMID:33795750
Draft Genome Sequences of 3 Strains of Apilactobacillus kunkeei Isolated from the Bee Gut Microbial Community. PMID:33795338
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts. PMID:33792634
Long-Lived Species of Bivalves Exhibit Low MT-DNA Substitution Rates. PMID:33791336
In situ recordings of large gelatinous spheres from NE Atlantic, and the first genetic confirmation of egg mass of Illex coindetii (Vérany, 1839) (Cephalopoda, Mollusca). PMID:33785774
Effects of Elevated CO2 on Photosynthetic Accumulation, Sucrose Metabolism-Related Enzymes, and Genes Identification in Goji Berry (Lycium barbarum L.). PMID:33777078
Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling. PMID:33770071
Detection and characterization of chicken astrovirus associated with hatchery disease in commercial day-old turkeys in southwestern Nigeria. PMID:33759002
mtDNAcombine: tools to combine sequences from multiple studies. PMID:33750296
Use of Mathematical Methods for the Biosafety Assessment of Agricultural Crops. PMID:33727728
Carotenoids produced by the deep-sea bacterium Erythrobacter citreus LAMA 915: detection and proposal of their biosynthetic pathway. PMID:33723710
Omics-Driven Biotechnology for Industrial Applications. PMID:33708762
Spatiotemporal persistence of multiple, diverse clades and toxins of Corynebacterium diphtheriae. PMID:33686077
DisCoVering potential candidates of RNAi-based therapy for COVID-19 using computational methods. PMID:33680575
Computational Audiology: New Approaches to Advance Hearing Health Care in the Digital Age. PMID:33675587
ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data. PMID:33664143
Generation and Testing of Fluorescent Adaptable Simple Theranostic (FAST) Proteins. PMID:33659348
Recent Advanced Technologies for the Characterization of Xenobiotic-Degrading Microorganisms and Microbial Communities. PMID:33644024
Reprograming of sRNA target specificity by the leader peptide peTrpL in response to antibiotic exposure. PMID:33619526
A comparative genomics-based study of positive strand RNA viruses emphasizing on SARS-CoV-2 utilizing dinucleotide signature, codon usage and codon context analyses. PMID:33615042
Classification of Homo sapiens gene behavior using linear discriminant analysis fused with minimum entropy mapping. PMID:33595791
Predicting mammalian hosts in which novel coronaviruses can be generated. PMID:33594041
A community resource for paired genomic and metabolomic data mining. PMID:33589842
Diversity and evolution of bacterial bioluminescence genes in the global ocean. PMID:33575578
Emergence of a Novel Pathogenic Poxvirus Infection in the Endangered Green Sea Turtle (Chelonia mydas) Highlights a Key Threatening Process. PMID:33572619
Elucidation of the hetero-dimeric binding activity of LasR and RhlR proteins with the promoter DNA and the role of a specific Phe residue during the biosynthesis of HCN synthase from opportunistic pathogen Pseudomonas aeruginosa. PMID:33555486
In Silico Studies of Lamiaceae Diterpenes with Bioinsecticide Potential against Aphis gossypii and Drosophila melanogaster. PMID:33540716
Mitochondrial DNA Content Is Linked to Cardiovascular Disease Patient Phenotypes. PMID:33533264
The mutational load in natural populations is significantly affected by high primary rates of retroposition. PMID:33526666
Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Yellow-Eyed Penguin (Megadyptes antipodes). PMID:33525382
Designed leucine-rich repeat proteins bind two muramyl dipeptide ligands. PMID:33512005
Complete mitochondrial genomes of six species of the freshwater red algal order Batrachospermales (Rhodophyta). PMID:33474260
LightCUD: a program for diagnosing IBD based on human gut microbiome data. PMID:33468221
Substrate-dependent effects of quaternary structure on RNase E activity. PMID:33446571
Short linear motif candidates in the cell entry system used by SARS-CoV-2 and their potential therapeutic implications. PMID:33436497
Mutations in SARS-CoV-2 nsp7 and nsp8 proteins and their predicted impact on replication/transcription complex structure. PMID:33433004
Characterization of a Complete Genome Sequence of Molluscum Contagiosum Virus from an Adult Woman in Australia. PMID:33414285
4SpecID: Reference DNA Libraries Auditing and Annotation System for Forensic Applications. PMID:33401773
Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya. PMID:33395690
Antimicrobial Resistance and in silico Virulence Profiling of Aliarcobacter butzleri Strains From German Water Poultry. PMID:33381106
Virxicon: A Lexicon Of Viral Sequences. PMID:33367605
RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles. PMID:33338400
Partial revision of the neustonic genus Scapholeberis Schoedler, 1858 (Crustacea: Cladocera): decoding of the barcoding results. PMID:33304655
Porcine hemothropic mycoplasmas infection associated with productive impact in intensive pig production. PMID:33292672
CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing. PMID:33290507
Population Dynamics in Italian Canids between the Late Pleistocene and Bronze Age. PMID:33256122
The Phosphoglycerate Kinase (PGK) Gene Family of Maize (Zea mays var. B73). PMID:33255472
Manganese Depletion Leads to Multisystem Changes in the Transcriptome of the Opportunistic Pathogen Streptococcus sanguinis. PMID:33250881
History and Evolution of Modeling in Biotechnology: Modeling & Simulation, Application and Hardware Performance. PMID:33240472
Comparative Genome Analysis Reveals the Molecular Basis of Niche Adaptation of Staphylococcus epidermidis Strains. PMID:33240320
Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea. PMID:33234025
The UCSC Genome Browser database: 2021 update. PMID:33221922
Genomic Analysis of Oral Lichen Planus and Related Oral Microbiome Pathogens. PMID:33207582
A Distinct Phylogenetic Cluster of Indian Severe Acute Respiratory Syndrome Coronavirus 2 Isolates. PMID:33200080
Including residual contact information into replica-exchange MD simulations significantly enriches native-like conformations. PMID:33196676
Triplex Real-Time PCR Approach for the Detection of Crucial Fungal Berry Pathogens-Botrytis spp., Colletotrichum spp. and Verticillium spp. PMID:33187143
Carrier-Mediated Drug Uptake in Fungal Pathogens. PMID:33182427
A comparative genomics multitool for scientific discovery and conservation. PMID:33177664
New RNA Structural Elements Identified in the Coding Region of the Coxsackie B3 Virus Genome. PMID:33143071
In silico Evolutionary Divergence Analysis Suggests the Potentiality of Capsid Protein VP2 in Serotype-Independent Foot-and-Mouth Disease Virus Detection. PMID:33102548
Cycloheximide-Producing Streptomyces Associated With Xyleborinus saxesenii and Xyleborus affinis Fungus-Farming Ambrosia Beetles. PMID:33101237
CCA-Addition Gone Wild: Unusual Occurrence and Phylogeny of Four Different tRNA Nucleotidyltransferases in Acanthamoeba castellanii. PMID:33095240
Arginine-Rich Small Proteins with a Domain of Unknown Function, DUF1127, Play a Role in Phosphate and Carbon Metabolism of Agrobacterium tumefaciens. PMID:33093235
RNA sequencing of whole blood in dogs with primary immune-mediated hemolytic anemia (IMHA) reveals novel insights into disease pathogenesis. PMID:33091028
The endangered California Condor (Gymnogyps californianus) population is exposed to local haemosporidian parasites. PMID:33087805
Ongoing Global and Regional Adaptive Evolution of SARS-CoV-2. PMID:33083804
Positive control synthesis method for COVID-19 diagnosis by one-step real-time RT-PCR. PMID:33058837
Procedures for DNA Extraction from Opium Poppy (Papaver somniferum L.) and Poppy Seed-Containing Products. PMID:33050241
Ericoid mycorrhizal symbiosis: theoretical background and methods for its comprehensive investigation. PMID:33043410
Facilitative pollinator sharing decreases with floral similarity in multiple systems. PMID:33040162
Inferring Evolutionary Timescales without Independent Timing Information: An Assessment of "Universal" Insect Rates to Calibrate a Collembola (Hexapoda) Molecular Clock. PMID:33036318
K-PAM: a unified platform to distinguish Klebsiella species K- and O-antigen types, model antigen structures and identify hypervirulent strains. PMID:33028855
The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering. PMID:33015004
Variola virus genome sequenced from an eighteenth-century museum specimen supports the recent origin of smallpox. PMID:33012235
A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses. PMID:33005342
Comparative Characterization of Two cxcl8 Homologs in Oplegnathus fasciatus: Genomic, Transcriptional and Functional Analyses. PMID:32998424
Phaeohyphomycosis caused by Diaporthe phaseolorum in an immunocompetent patient in Thailand: a case report. PMID:32974592
Complete mitochondrial genome of Iniistius trivittatus and unique variation in two observed inserts between rRNA and tRNA genes in wrasses. PMID:32957913
Diacylglycerol Acetyltransferase Gene Isolated from Euonymus europaeus L. Altered Lipid Metabolism in Transgenic Plant towards the Production of Acetylated Triacylglycerols. PMID:32947896
Selection of antileishmanial sesquiterpene lactones from SistematX database using a combined ligand-/structure-based virtual screening approach. PMID:32909084
Whole Mitochondrial Genome Analysis in Serbian Cases of Leber's Hereditary Optic Neuropathy. PMID:32887465
Evolution of Early SARS-CoV-2 and Cross-Coronavirus Immunity. PMID:32878931
An adult patient with suspected of monkeypox infection differential diagnosed to chickenpox. PMID:32874456
Evaluation of computational methods for human microbiome analysis using simulated data. PMID:32864214
2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals. PMID:32859198
Determining the interaction status and evolutionary fate of duplicated homomeric proteins. PMID:32853212
Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis. PMID:32819293
Setting a baseline for global urban virome surveillance in sewage. PMID:32792677
Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site. PMID:32785287
Biases in bulk: DNA metabarcoding of marine communities and the methodology involved. PMID:32779312
Developmental data for several human mitochondrial DNA (mtDNA) long amplification targets. PMID:32760763
A New Genus of Oak Gall Wasp, Striatoandricus Pujade-Villar (Hymenoptera: Cynipidae: Cynipini) from America with Descriptions of Two New Mexican Species. PMID:32760454
Genomic Analysis and Antimicrobial Resistance of Aliarcobacter cryaerophilus Strains From German Water Poultry. PMID:32754133
Identification of bacteria and fungi inhabiting fruiting bodies of Burgundy truffle (Tuber aestivum Vittad.). PMID:32734321
Analysis of conserved miRNAs in cynomolgus macaque genome using small RNA sequencing and homology searching. PMID:32728489
Ehrlichia spp. and Anaplasma spp. in Xenarthra mammals from Brazil, with evidence of novel 'Candidatus Anaplasma spp.'. PMID:32724088
Bacillus strain selection with plant growth-promoting mechanisms as potential elicitors of systemic resistance to gray mold in pepper plants. PMID:32714014
Analysis of Virus Population Profiles within Pigs Infected with Virulent Classical Swine Fever Viruses: Evidence for Bottlenecks in Transmission but Absence of Tissue-Specific Virus Variants. PMID:32699086
Application of artificial intelligence to the in silico assessment of antimicrobial resistance and risks to human and animal health presented by priority enteric bacterial pathogens. PMID:32673383
Spatial and temporal expansions of Eastern equine encephalitis virus and phylogenetic groups isolated from mosquitoes and mammalian cases in New York State from 2013 to 2019. PMID:32672516
Computational approaches in viral ecology. PMID:32670501
GBA3: a polymorphic pseudogene in humans that experienced repeated gene loss during mammalian evolution. PMID:32665690
Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook. PMID:32662816
KGHC: a knowledge graph for hepatocellular carcinoma. PMID:32646496
URMAP, an ultra-fast read mapper. PMID:32612885
Helminths of urban rats in developed countries: a systematic review to identify research gaps. PMID:32607706
An African bat in Europe, Plecotus gaisleri: Biogeographic and ecological insights from molecular taxonomy and Species Distribution Models. PMID:32607190
DNA mini-barcoding of leporids using noninvasive fecal DNA samples and its significance for monitoring an invasive species. PMID:32607145
Fulvic acid increases forage legume growth inducing preferential up-regulation of nodulation and signalling-related genes. PMID:32599619
Designing a novel mRNA vaccine against SARS-CoV-2: An immunoinformatics approach. PMID:32599237
Differential Responses of a Coastal Prokaryotic Community to Phytoplanktonic Organic Matter Derived from Cellular Components and Exudates. PMID:32554942
Habitat requirements affect genetic variation in three species of mayfly (Ephemeroptera, Baetidae) from South Africa. PMID:32547291
A synthesis of bacterial and archaeal phenotypic trait data. PMID:32503990
Highly active rubiscos discovered by systematic interrogation of natural sequence diversity. PMID:32500941
Birds suppress pests in corn but release them in soybean crops within a mixed prairie/agriculture system. PMID:32476673
Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale. PMID:32471482
Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads. PMID:32471343
Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB). PMID:32463383
Convergent molecular evolution among ash species resistant to the emerald ash borer. PMID:32451426
Discovery of 20 novel ribosomal leader candidates in bacteria and archaea. PMID:32448158
Epitope-Based Vaccine Designing of Nocardia asteroides Targeting the Virulence Factor Mce-Family Protein by Immunoinformatics Approach. PMID:32435172
Human-likeness of antibody biologics determined by back-translation and comparison with large antibody variable gene repertoires. PMID:32397786
Gene sequence analysis of toxins from the spider Phoneutria nigriventer revealed an intronless feature. PMID:32395122
A single nucleotide variant of human PARP1 determines response to PARP inhibitors. PMID:32352035
Construction and expression of recombinant uricase‑expressing genetically engineered bacteria and its application in rat model of hyperuricemia. PMID:32323736
Predicting the short-term success of human influenza virus variants with machine learning. PMID:32259469
Modeling cancer genomic data in yeast reveals selection against ATM function during tumorigenesis. PMID:32187176
Molecular docking and network connections of active compounds from the classical herbal formula Ding Chuan Tang. PMID:32185106
Isolation of Exopolysaccharide-Producing Yeast and Lactic Acid Bacteria from Quinoa (Chenopodium Quinoa) Sourdough Fermentation. PMID:32183117
Enabling reusability of plant phenomic datasets with MIAPPE 1.1. PMID:32171029
An array-based melt curve analysis method for the identification and classification of closely related pathogen strains. PMID:32161799
Comparative Genomic Analysis Confirms Five Genetic Populations of the Select Agent, Rathayibacter toxicus. PMID:32150860
Maritime trap-jaw ants (Hymenoptera, Formicidae, Ponerinae) of the Indo-Australian region - redescription of Odontomachus malignus Smith and description of a related new species from Singapore, including first descriptions of males. PMID:32148428
DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats. PMID:32123172
Functional Innovation in the Evolution of the Calcium-Dependent System of the Eukaryotic Endoplasmic Reticulum. PMID:32117448
Bdellovibrio and Like Organisms in Lake Geneva: An Unseen Elephant in the Room? PMID:32117128
Consistency of Targeted Metatranscriptomics and Morphological Characterization of Phytoplankton Communities. PMID:32117126
Salinity tolerance in barley during germination- homologs and potential genes. PMID:32115909
Chromosome-Level Assembly of the Caenorhabditis remanei Genome Reveals Conserved Patterns of Nematode Genome Organization. PMID:32111628
Comparative Genomics and Evolutionary Analysis of RNA-Binding Proteins of Burkholderia cenocepacia J2315 and Other Members of the B. cepacia Complex. PMID:32098200
Prediction of new associations between ncRNAs and diseases exploiting multi-type hierarchical clustering. PMID:32093606
Novel routes towards bioplastics from plants: elucidation of the methylperillate biosynthesis pathway from Salvia dorisiana trichomes. PMID:32090266
Identification of eukaryotic translation initiation factors and the temperature-dependent nature of Turnip mosaic virus epidemics in allopolyploid Brassica juncea. PMID:32051808
Complete, closed bacterial genomes from microbiomes using nanopore sequencing. PMID:32042169
Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering. PMID:32032366
Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253. PMID:31992772
Vanillin Production in Pseudomonas: Whole-Genome Sequencing of Pseudomonas sp. Strain 9.1 and Reannotation of Pseudomonas putida CalA as a Vanillin Reductase. PMID:31924622
Resurgence and predominance of G3P[8] human rotaviruses in north-central Bangladesh, 2018-2019. PMID:31908781
The complete genome sequence of the nitrile biocatalyst Rhodocccus rhodochrous ATCC BAA-870. PMID:31898479
Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation. PMID:31873203
Nucleotide composition of transposable elements likely contributes to AT/GC compositional homogeneity of teleost fish genomes. PMID:31857829
Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination. PMID:31841523
Brazilian fungal diversity represented by DNA markers generated over 20 years. PMID:31828716
A Simple Method for Sample Preparation to Facilitate Efficient Whole-Genome Sequencing of African Swine Fever Virus. PMID:31817647
The evolution and genetic diversity of avian influenza A(H9N2) viruses in Cambodia, 2015 - 2016. PMID:31815945
Genetic diversity and evolutionary dynamics of dengue isolates from India. PMID:31803801
Light-driven anaerobic microbial oxidation of manganese. PMID:31802001
Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation. PMID:31800571
New insights into Sauropsid Papillomaviridae evolution and epizootiology: discovery of two novel papillomaviruses in native and invasive Island geckos. PMID:31798966
Natriuretic peptides appeared after their receptors in vertebrates. PMID:31771521
Rhizosphere Metagenomics of Paspalum scrobiculatum L. (Kodo Millet) Reveals Rhizobiome Multifunctionalities. PMID:31771141
Estradiol and genistein effects on the sea bass (Dicentrarchus labrax) scales: Transcriptome dataset. PMID:31763380
Evolutionary conserved compositional structures hidden in genomes of the foot-and-mouth disease virus and of the human rhinovirus. PMID:31719605
Comparison of Six Commercial Meat Starter Cultures for the Fermentation of Yellow Mealworm (Tenebrio molitor) Paste. PMID:31717367
Mitochondrial DNA Sequence Variability of Spirometra Species in Asian Countries. PMID:31715688
The Genome of the Plant-Associated Lactic Acid Bacterium Lactococcus lactis KF147 Harbors a Hybrid NRPS-PKS System Conserved in Strains of the Dental Cariogenic Streptococcus mutans. PMID:31705391
Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus. PMID:31681953
GenBank is a reliable resource for 21st century biodiversity research. PMID:31636175
Rapid Tuberculosis Diagnosis Using Reporter Enzyme Fluorescence. PMID:31511338
ePath: an online database towards comprehensive essential gene annotation for prokaryotes. PMID:31506471
OPA1: 516 unique variants and 831 patients registered in an updated centralized Variome database. PMID:31500643
Whole-Genome Sequence of Listeria monocytogenes Serovar 1/2a Strain IZSAM_Lm_15_17439_A144, Representative of a Human Outbreak in 2008. PMID:31488521
SamPler - a novel method for selecting parameters for gene functional annotation routines. PMID:31488049
Bardoxolone methyl analog attenuates proteinuria-induced tubular damage by modulating mitochondrial function. PMID:31431054
Exploring the new horizons of drug repurposing: A vital tool for turning hard work into smart work. PMID:31421629
Fast, Sensitive and Specific Detection of Thailand orthohantavirus and its Variants Using One-Step Real-Time Reverse-Transcription Polymerase Chain Reaction Assay. PMID:31390747
Whole-Genome Sequencing and Annotation of Clostridium tyrobutyricum Strain Cirm BIA 2237, Isolated from Silage. PMID:31346011
Characterisation of measles after the introduction of the combined measles-mumps-rubella (MMR) vaccine in 2004 with focus on the laboratory data, 2016 to 2019 outbreak, Romania. PMID:31339098
A Genetic System for Methanocaldococcus jannaschii: An Evolutionary Deeply Rooted Hyperthermophilic Methanarchaeon. PMID:31333590
Structural characterization of Treponema pallidum Tp0225 reveals an unexpected leucine-rich repeat architecture. PMID:31282868
On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics. PMID:31281302
Multicenter Clinical Validation of the Molecular BD Max Enteric Viral Panel for Detection of Enteric Pathogens. PMID:31270179
Building a DNA barcode library for the freshwater fishes of Bangladesh. PMID:31253861
In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR. PMID:31244651
Genome-driven cell engineering review: in vivo and in silico metabolic and genome engineering. PMID:31243142
Diet assessment of two land planarian species using high-throughput sequencing data. PMID:31213615
Identification and Characterization of microRNAs and Their Predicted Functions in Biomineralization in the Pearl Oyster (Pinctada fucata). PMID:31212990
Human epithelial ovarian cancer cells expressing CD105, CD44 and CD106 surface markers exhibit increased invasive capacity and drug resistance. PMID:31186752
PEST sequences from a cactus dehydrin regulate its proteolytic degradation. PMID:31143531
The role of fungi in heterogeneous sediment microbial networks. PMID:31101834
Transcriptome analysis of activated sludge microbiomes reveals an unexpected role of minority nitrifiers in carbon metabolism. PMID:31098412
Analysis of hepatitis B virus genotype and gene mutation in patients with advanced liver disease in East Kalimantan, Indonesia. PMID:31086664
Evolution and Genetic Diversity of the k13 Gene Associated with Artemisinin Delayed Parasite Clearance in Plasmodium falciparum. PMID:31085516
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes. PMID:31067235
Envisioning data sharing for the biocomputing community. PMID:31065349
Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus). PMID:31060501
Origins, Importance and Genetic Stability of the Prototype Strains Gilliam, Karp and Kato of Orientia tsutsugamushi. PMID:31052283
Near-Neighbor Interactions in the NS3-4A Protease of HCV Impact Replicative Fitness of Drug-Resistant Viral Variants. PMID:31051172
Categorization of species as native or nonnative using DNA sequence signatures without a complete reference library. PMID:31050090
Cryptic diversity in Lithobateswarszewitschii (Amphibia, Anura, Ranidae). PMID:31048968
An integrative assessment of the diversity, phylogeny, distribution, and conservation of the terrestrial reptiles (Sauropsida, Squamata) of the United Arab Emirates. PMID:31048886
Molecular characterization of pathogenic 4/91-like and QX-like infectious bronchitis virus infecting commercial poultry farms in Indonesia. PMID:31040571
Intricate trophic links between threatened vertebrates confined to a small island in the Atlantic Ocean. PMID:31031960
MIReAD, a minimum information standard for reporting arthropod abundance data. PMID:31024009
Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community. PMID:31003499
Towards Understanding of Polymorphism of the G-rich Region of Human Papillomavirus Type 52. PMID:30987050
Mapping the diversity of microbial lignin catabolism: experiences from the eLignin database. PMID:30963208
Piscine orthoreovirus sequences in escaped farmed Atlantic salmon in Washington and British Columbia. PMID:30940162
Effects of sublethal doses of clothianidin and/or V. destructor on honey bee (Apis mellifera) self-grooming behavior and associated gene expression. PMID:30914660
A novel Babesia sp. associated with clinical signs of babesiosis in domestic cats in South Africa. PMID:30909950
The Nudix Hydrolase 15 (NUDT15) Gene Variants among Jordanian Arab Population. PMID:30909691
Silencing the lncRNA Maclpil in pro-inflammatory macrophages attenuates acute experimental ischemic stroke via LCP1 in mice. PMID:30895879
Body mass as a supertrait linked to abundance and behavioral dominance in hummingbirds: A phylogenetic approach. PMID:30847060
Promiscuous terpene synthases from Prunella vulgaris highlight the importance of substrate and compartment switching in terpene synthase evolution. PMID:30843212
Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography. PMID:30838129
Genome-Wide Associations of Chlorophyll Fluorescence OJIP Transient Parameters Connected With Soil Drought Response in Barley. PMID:30828338
TypeLoader2: Automated submission of novel HLA and killer-cell immunoglobulin-like receptor alleles in full length. PMID:30821128
Pollen metabarcoding reveals broad and species-specific resource use by urban bees. PMID:30809427
Technological advances in maize breeding: past, present and future. PMID:30798332
The plastid and mitochondrial genomes of Eucalyptus grandis. PMID:30760198
Blood parasites infecting the Hoatzin (Opisthocomus hoazin), a unique neotropical folivorous bird. PMID:30740273
Improved phylogeny of brown algae Cystoseira (Fucales) from the Atlantic-Mediterranean region based on mitochondrial sequences. PMID:30699208
Isolation and characterization of two Acinetobacter species able to degrade 3-methylindole. PMID:30689668
Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation. PMID:30680888
Identification of the parasitoid community associated with an outbreaking gall wasp, Zapatella davisae, and their relative abundances in New England and Long Island, New York. PMID:30680092
Molecular Characterisation of Equine Herpesvirus 1 Isolates from Cases of Abortion, Respiratory and Neurological Disease in Ireland between 1990 and 2017. PMID:30650561
The origin of exotic pet sugar gliders (Petaurus breviceps) kept in the United States of America. PMID:30643698
A novel approach to produce glucose from the supernatant obtained upon the dilute acid pre-treatment of rice straw and synergistic action of hydrolytic enzymes producing microbes. PMID:30637642
Diversity, Dynamics, and Distribution of Bdellovibrio and Like Organisms in Perialpine Lakes. PMID:30635378
Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach. PMID:30616502
The Genome-Based Virus Taxonomy with ICTV Database Extension. PMID:30602083
The use of clade-specific PCR assays to identify novel nitrilase genes from environmental isolates. PMID:30597773
CNN-MGP: Convolutional Neural Networks for Metagenomics Gene Prediction. PMID:30588558
Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp. PMID:30587126
Wild bees and their nests host Paenibacillus bacteria with functional potential of avail. PMID:30579360
The Prodigal Compound: Return of Ribosyl 1,5-Bisphosphate as an Important Player in Metabolism. PMID:30567937
Multiple Introductions of Domestic Cat Feline Leukemia Virus in Endangered Florida Panthers. PMID:30561312
Using Core Genome Alignments To Assign Bacterial Species. PMID:30534598
Whole-Genome Sequences of Two Arthrobacter sp. Strains, 4041 and 4042, Potentially Usable in Agriculture and Environmental Depollution. PMID:30533628
Characterization of small genomic regions of the hepatitis B virus should be performed with more caution. PMID:30526629
Cluster oligonucleotide signatures for rapid identification by sequencing. PMID:30522439
A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae). PMID:30498089
Computational prediction of inter-species relationships through omics data analysis and machine learning. PMID:30453987
Environmental pollutant-mediated disruption of gut microbial metabolism of the prebiotic inulin. PMID:30447394
A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events. PMID:30419019
Machine Learning Reveals Missing Edges and Putative Interaction Mechanisms in Microbial Ecosystem Networks. PMID:30417106
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. PMID:30412219
At the confluence of vicariance and dispersal: Phylogeography of cavernicolous springtails (Collembola: Arrhopalitidae, Tomoceridae) codistributed across a geologically complex karst landscape in Illinois and Missouri. PMID:30397468
What we can see from very small size sample of metagenomic sequences. PMID:30390617
Exploring NS3/4A, NS5A and NS5B proteins to design conserved subunit multi-epitope vaccine against HCV utilizing immunoinformatics approaches. PMID:30382118
HmtVar: a new resource for human mitochondrial variations and pathogenicity data. PMID:30371888
A new ecotoxicological test method for genetically modified plants and other stressors in soil with the black fungus gnat Bradysia impatiens (Diptera): current status of test development and dietary effects of azadirachtin on larval development and emergence rate. PMID:30370193
Metagenomics Reveals Microbial Diversity and Metabolic Potentials of Seawater and Surface Sediment From a Hadal Biosphere at the Yap Trench. PMID:30369913
ConfeitoGUI: A toolkit for size-sensitive community detection from a correlation network. PMID:30352084
PhasomeIt: an 'omics' approach to cataloguing the potential breadth of phase variation in the genus Campylobacter. PMID:30351264
Discovery of Bacterial Deaminases That Convert 5-Fluoroisocytosine Into 5-Fluorouracil. PMID:30349513
RNA Interference to Control Asian Corn Borer Using dsRNA from a Novel Glutathione-S-Transferase Gene of Ostrinia furnacalis (Lepidoptera: Crambidae). PMID:30346622
High-quality genome sequences of uncultured microbes by assembly of read clouds. PMID:30320765
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. PMID:30289528
In silico characterization of the global Geobacillus and Parageobacillus secretome. PMID:30285747
Mitogenome evolution in the last surviving woolly mammoth population reveals neutral and functional consequences of small population size. PMID:30283657
Exploration of Survival Traits, Probiotic Determinants, Host Interactions, and Functional Evolution of Bifidobacterial Genomes Using Comparative Genomics. PMID:30275399
Insights From Deep Sequencing of the HBV Genome-Unique, Tiny, and Misunderstood. PMID:30268787
Progress of analytical tools and techniques for human gut microbiome research. PMID:30267313
Preliminary analysis of New Zealand scampi (Metanephrops challengeri) diet using metabarcoding. PMID:30258728
Bona fide choline monoxygenases evolved in Amaranthaceae plants from oxygenases of unknown function: Evidence from phylogenetics, homology modeling and docking studies. PMID:30256846
Characterization of novel glycosyl hydrolases discovered by cell wall glycan directed monoclonal antibody screening and metagenome analysis of maize aerial root mucilage. PMID:30256843
Pseudogenes Provide Evolutionary Evidence for the Competitive Endogenous RNA Hypothesis. PMID:30252115
Cloning and Characterization of Limonoid Glucosyltransferase from Kinnow Mandarin (Citrus reticulata Blanco). PMID:30228797
Three-Finger Toxin Diversification in the Venoms of Cat-Eye Snakes (Colubridae: Boiga). PMID:30206667
Novel analgesic ω-conotoxins from the vermivorous cone snail Conus moncuri provide new insights into the evolution of conopeptides. PMID:30194442
Over 2.5 million COI sequences in GenBank and growing. PMID:30192752
High-resolution ISR amplicon sequencing reveals personalized oral microbiome. PMID:30185233
DNA barcoding of Malaysian commercial snapper reveals an unrecognized species of the yellow-lined Lutjanus (Pisces:Lutjanidae). PMID:30183729
Spatio-temporal evolution of Allium L. in the Qinghai-Tibet-Plateau region: Immigration and in situ radiation. PMID:30159508
Generating DNA sequence data with limited resources for molecular biology: Lessons from a barcoding project in Indonesia. PMID:30131909
Integrated genomic and fossil evidence illuminates life's early evolution and eukaryote origin. PMID:30127539
Review of Drug Repositioning Approaches and Resources. PMID:30123072
The unusual flagellar-targeting mechanism and functions of the trypanosome ortholog of the ciliary GTPase Arl13b. PMID:30097558
Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application. PMID:30084865
Evolutionary dynamics of host specialization in wood-decay fungi. PMID:30075699
Understanding the Positional Binding and Substrate Interaction of a Highly Thermostable GH10 Xylanase from Thermotoga maritima by Molecular Docking. PMID:30061529
Metatranscriptome Analysis Deciphers Multifunctional Genes and Enzymes Linked With the Degradation of Aromatic Compounds and Pesticides in the Wheat Rhizosphere. PMID:30034370
Evaluation of pathogenicity of Salmonella Gallinarum strains harbouring deletions in genes whose orthologues are conserved pseudogenes in S. Pullorum. PMID:30028856
Feature selection for gene prediction in metagenomic fragments. PMID:30026811
Isolation of a divergent strain of Rickettsia japonica from Dew's Australian bat Argasid ticks (Argas (Carios) dewae) in Victoria, Australia. PMID:30025798
Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them. PMID:30018876
Massive up-regulation of LBD transcription factors and EXPANSINs highlights the regulatory programs of rhizomania disease. PMID:30011123
MouR controls the expression of the Listeria monocytogenes Agr system and mediates virulence. PMID:30011022
Noncontiguous finished genome sequences and descriptions of Actinomyces ihuae, Actinomyces bouchesdurhonensis, Actinomyces urinae, Actinomyces marseillensis, Actinomyces mediterranea and Actinomyces oralis sp. nov. identified by culturomics. PMID:29992027
Allosteric and orthosteric pharmacology of cannabidiol and cannabidiol-dimethylheptyl at the type 1 and type 2 cannabinoid receptors. PMID:29981240
HFSP: high speed homology-driven function annotation of proteins. PMID:29950013
Evaluation of marine zooplankton community structure through environmental DNA metabarcoding. PMID:29937700
A high-risk Zika and dengue transmission hub: virus detections in mosquitoes at a Brazilian university campus. PMID:29929561
The mitochondrial genomes of sarcoptiform mites: are any transfer RNA genes really lost? PMID:29914378
Long-Term Follow-Up of Acute Hepatitis B: New Insights in Its Natural History and Implications for Antiviral Treatment. PMID:29895748
Toll-Like Receptor Evolution in Birds: Gene Duplication, Pseudogenization, and Diversifying Selection. PMID:29893911
Investigating the viral ecology of global bee communities with high-throughput metagenomics. PMID:29891995
Sorbitol Modulates Resistance to Alternaria alternata by Regulating the Expression of an NLR Resistance Gene in Apple. PMID:29871985
Complete Genome Sequences of Four Bovine Coronavirus Isolates from Pennsylvania. PMID:29853507
CBD: a biomarker database for colorectal cancer. PMID:29846545
EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements. PMID:29843612
Small RNA profiling of low biomass samples: identification and removal of contaminants. PMID:29759067
Genome-wide prediction of CRISPR/Cas9 targets in Kluyveromyces marxianus and its application to obtain a stable haploid strain. PMID:29743485
Structure of the DASH/Dam1 complex shows its role at the yeast kinetochore-microtubule interface. PMID:29724956
Comparative Genomic Analysis of Holospora spp., Intranuclear Symbionts of Paramecia. PMID:29713316
OMGene: mutual improvement of gene models through optimisation of evolutionary conservation. PMID:29703150
New perspectives: systems medicine in cardiovascular disease. PMID:29699591
Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge. PMID:29688374
HIV Resistance Prediction to Reverse Transcriptase Inhibitors: Focus on Open Data. PMID:29671808
Maturity onset diabetes of the young due to HNF1A variants in Croatia. PMID:29666556
First Report of a New Isolate of Metarhizium rileyi from Maize Fields of Quivicán, Cuba. PMID:29651182
Haemophilus ducreyi cutaneous ulcer contracted at Seram Island, Indonesia, presented in the Netherlands. PMID:29649298
Identification of G-quadruplex forming sequences in three manatee papillomaviruses. PMID:29630682
Microbial Dynamics during Industrial Rearing, Processing, and Storage of Tropical House Crickets (Gryllodes sigillatus) for Human Consumption. PMID:29625988
Candidate DNA Barcode Tags Combined With High Resolution Melting (Bar-HRM) Curve Analysis for Authentication of Senna alexandrina Mill. With Validation in Crude Drugs. PMID:29593755
Identification and biosynthesis of thymidine hypermodifications in the genomic DNA of widespread bacterial viruses. PMID:29555775
Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein. PMID:29551514
Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool. PMID:29540962
CD117/c-kit in Cancer Stem Cell-Mediated Progression and Therapeutic Resistance. PMID:29518044
An adaptable but threatened big cat: density, diet and prey selection of the Indochinese leopard (Panthera pardus delacouri) in eastern Cambodia. PMID:29515839
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads. PMID:29499650
Comparative Genomics and Identification of an Enterotoxin-Bearing Pathogenicity Island, SEPI-1/SECI-1, in Staphylococcus epidermidis Pathogenic Strains. PMID:29495323
Variations on a theme: evolution of the phage-shock-protein system in Actinobacteria. PMID:29488183
Host plant forensics and olfactory-based detection in Afro-tropical mosquito disease vectors. PMID:29462150
Engineering Escherichia coli to grow constitutively on D-xylose using the carbon-efficient Weimberg pathway. PMID:29458683
SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets. PMID:29441125
Hepatitis B Virus DNA Integration Occurs Early in the Viral Life Cycle in an In Vitro Infection Model via Sodium Taurocholate Cotransporting Polypeptide-Dependent Uptake of Enveloped Virus Particles. PMID:29437961
Molecular detection of field predation among larvae of two ladybird beetles is partially predicted from laboratory experiments. PMID:29416074
Ancient Diversification of Three-Finger Toxins in Micrurus Coral Snakes. PMID:29379986
Potato Mop-Top Virus Co-Opts the Stress Sensor HIPP26 for Long-Distance Movement. PMID:29374107
Aphyllophoroid fungi in insular woodlands of eastern Ukraine. PMID:29362557
Management regime is the most important factor influencing ectomycorrhizal species community in Norway spruce forests after windthrow. PMID:29352412
A putative lateral flagella of the cystic fibrosis pathogen Burkholderia dolosa regulates swimming motility and host cytokine production. PMID:29346379
Integrative overview of the herpetofauna from Serra da Mocidade, a granitic mountain range in northern Brazil. PMID:29302235
Modularity Facilitates Flexible Tuning of Plastic and Evolutionary Gene Expression Responses during Early Divergence. PMID:29293993
Prevalence of mixed genotype hepatitis C virus infections in the UK as determined by genotype-specific PCR and deep sequencing. PMID:29274184
Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus. PMID:29270219
Growth of Chlamydia pneumoniae Is Enhanced in Cells with Impaired Mitochondrial Function. PMID:29259924
Metabolomic Profiles of a Midge (Procladius villosimanus, Kieffer) Are Associated with Sediment Contamination in Urban Wetlands. PMID:29258276
De-novo emergence of SINE retroposons during the early evolution of passerine birds. PMID:29255493
The landscape of human mutually exclusive splicing. PMID:29242366
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. PMID:29240889
Evolution of a designed protein assembly encapsulating its own RNA genome. PMID:29236688
Calling all archaeologists: guidelines for terminology, methodology, data handling, and reporting when undertaking and reviewing stable isotope applications in archaeology. PMID:29235694
Model-based genome-wide determination of RNA chain elongation rates in Escherichia coli. PMID:29222445
Advances in Text Mining and Visualization for Precision Medicine. PMID:29218914
Detection of a Planktothrix agardhii Bloom in Portuguese Marine Coastal Waters. PMID:29207501
Culture-independent genome sequencing of Coxiella burnetii from a native heart valve of a Tunisian patient with severe infective endocarditis. PMID:29201381
Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample. PMID:29184134
Mitochondrial genome sequencing reveals potential origins of the scabies mite Sarcoptes scabiei infesting two iconic Australian marsupials. PMID:29183283
Sugar Lego: gene composition of bacterial carbohydrate metabolism genomic loci. PMID:29178959
Sequence analysis of the N-acetyltransferase 2 gene (NAT2) among Jordanian volunteers. PMID:29173142
Regulation of Sucrose Transporters and Phloem Loading in Response to Environmental Cues. PMID:29158330
PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes. PMID:29156057
The rises and falls of opsin genes in 59 ray-finned fish genomes and their implications for environmental adaptation. PMID:29138475
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID:29123534
Surviving a Dry Future: Abscisic Acid (ABA)-Mediated Plant Mechanisms for Conserving Water under Low Humidity. PMID:29113039
Spatial phylogenetics of the native California flora. PMID:29073895
DCJ-RNA - double cut and join for RNA secondary structures. PMID:29072145
A Horizontally Transferred Autonomous Helitron Became a Full Polydnavirus Segment in Cotesia vestalis. PMID:29042411
Isothermal amplification of environmental DNA (eDNA) for direct field-based monitoring and laboratory confirmation of Dreissena sp. PMID:29036210
Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data. PMID:29020980
PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities. PMID:28993761
Co-adaption of tRNA gene copy number and amino acid usage influences translation rates in three life domains. PMID:28992099
Separation and assembly of deep sequencing data into discrete sub-population genomes. PMID:28977510
Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions. PMID:28977401
Bacterial community associated with worker honeybees (Apis mellifera) affected by European foulbrood. PMID:28966892
The LacI-Family Transcription Factor, RbsR, Is a Pleiotropic Regulator of Motility, Virulence, Siderophore and Antibiotic Production, Gas Vesicle Morphogenesis and Flotation in Serratia. PMID:28955306
Analysis of the Sequences, Structures, and Functions of Product-Releasing Enzyme Domains in Fungal Polyketide Synthases. PMID:28928723
The third restriction-modification system from Thermus aquaticus YT-1: solving the riddle of two TaqII specificities. PMID:28911108
Carrion crows (Corvus corone) of southwest Germany: important hosts for haemosporidian parasites. PMID:28899382
Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes. PMID:28878981
A Protocol for Generating and Exchanging (Genome-Scale) Metabolic Resource Allocation Models. PMID:28878200
Selection for energy efficiency drives strand-biased gene distribution in prokaryotes. PMID:28874819
Recombinant Xylanase from Bacillus tequilensis BT21: Biochemical Characterisation and Its Application in the Production of Xylobiose from Agricultural Residues. PMID:28867946
Novel nuclear barcode regions for the identification of flatfish species. PMID:28867876
A new and updated resource for codon usage tables. PMID:28865429
Assessing the relationships between phylogenetic and functional singularities in sharks (Chondrichthyes). PMID:28861233
Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246. PMID:28852435
On the global CRISPR array behavior in class I systems. PMID:28851439
Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica. PMID:28837661
Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems. PMID:28821820
Extracting geographic locations from the literature for virus phylogeography using supervised and distant supervision methods. PMID:28815119
Comparative pathogenomics of Clostridium tetani. PMID:28800585
Enter the Dragon: The Dynamic and Multifunctional Evolution of Anguimorpha Lizard Venoms. PMID:28783084
NuBBEDB: an updated database to uncover chemical and biological information from Brazilian biodiversity. PMID:28775335
Correcting names of bacteria deposited in National Microbial Repositories: an analysed sequence data necessary for taxonomic re-categorization of misclassified bacteria-ONE example, genus Lysinibacillus. PMID:28761909
Early detection monitoring for aquatic non-indigenous species: Optimizing surveillance, incorporating advanced technologies, and identifying research needs. PMID:28738203
Draft Genome Sequence of the Deep-Sea Bacterium Moritella sp. JT01 and Identification of Biotechnologically Relevant Genes. PMID:28733934
Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi. PMID:28730541
Genotype-specific acquisition, evolution and adaptation of characteristic mutations in hepatitis E virus. PMID:28727933
ProtozoaDB 2.0: A Trypanosoma Brucei Case Study. PMID:28726736
Rational design of biosafe crop resistance to a range of nematodes using RNA interference. PMID:28703405
Cost-effective conservation of amphibian ecology and evolution. PMID:28691084
Clearing muddied waters: Capture of environmental DNA from turbid waters. PMID:28686659
The structure of Plasmodium falciparum 3D7_0606800 reveals a bi-lobed architecture that supports re-annotation as a Venus Flytrap protein. PMID:28681555
Veronica officinalis Product Authentication Using DNA Metabarcoding and HPLC-MS Reveals Widespread Adulteration with Veronica chamaedrys. PMID:28674497
Canis mtDNA HV1 database: a web-based tool for collecting and surveying Canis mtDNA HV1 haplotype in public database. PMID:28651548
Natural RNA Polymerase Aptamers Regulate Transcription in E. coli. PMID:28648779
Unexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae. PMID:28644443
Characterization of Feruloyl Esterases Produced by the Four Lactobacillus Species: L. amylovorus, L. acidophilus, L. farciminis and L. fermentum, Isolated from Ensiled Corn Stover. PMID:28626449
Flavivirus and Filovirus EvoPrinters: New alignment tools for the comparative analysis of viral evolution. PMID:28622346
Novel Class IIa-Selective Histone Deacetylase Inhibitors Discovered Using an in Silico Virtual Screening Approach. PMID:28607401
Identification of Salt Tolerance-related microRNAs and Their Targets in Maize (Zea mays L.) Using High-throughput Sequencing and Degradome Analysis. PMID:28603532
Unique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation. PMID:28582576
What is in your cup of tea? DNA Verity Test to characterize black and green commercial teas. PMID:28542606
Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection. PMID:28542435
Characterization of MHC class I in a long distance migratory wader, the Icelandic black-tailed godwit. PMID:28534224
Phytoplasmas-The "Crouching Tiger" Threat of Australian Plant Pathology. PMID:28491068
Linking species habitat and past palaeoclimatic events to evolution of the teleost innate immune system. PMID:28446692
Model-based biotechnological potential analysis of Kluyveromyces marxianus central metabolism. PMID:28444480
Gene ORGANizer: linking genes to the organs they affect. PMID:28444223
Molecular phylogeny of 21 tropical bamboo species reconstructed by integrating non-coding internal transcribed spacer (ITS1 and 2) sequences and their consensus secondary structure. PMID:28439758
Functional Analysis of the rs774872314, rs116171003, rs200231898 and rs201107751 Polymorphisms in the Human RORγT Gene Promoter Region. PMID:28430123
Enhancing faba bean (Vicia faba L.) genome resources. PMID:28419381
Genomic Differentiation and Demographic Histories of Atlantic and Indo-Pacific Yellowfin Tuna (Thunnus albacares) Populations. PMID:28419285
Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.). PMID:28407753
Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function. PMID:28403817
Evolutionary analysis of vision genes identifies potential drivers of visual differences between giraffe and okapi. PMID:28396824
Badger macrophages fail to produce nitric oxide, a key anti-mycobacterial effector molecule. PMID:28382943
Biocuration in the structure-function linkage database: the anatomy of a superfamily. PMID:28365730
Shetti, a simple tool to parse, manipulate and search large datasets of sequences. PMID:28348820
Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity. PMID:28265071
Heart and skeletal muscle inflammation (HSMI) disease diagnosed on a British Columbia salmon farm through a longitudinal farm study. PMID:28225783
Metacoder: An R package for visualization and manipulation of community taxonomic diversity data. PMID:28222096
De novo assembly of the sea trout (Salmo trutta m. trutta) skin transcriptome to identify putative genes involved in the immune response and epidermal mucus secretion. PMID:28212382
Towards sustainable fishery management for skates in South America: The genetic population structure of Zearaja chilensis and Dipturus trachyderma (Chondrichthyes, Rajiformes) in the south-east Pacific Ocean. PMID:28207832
NOVOPlasty: de novo assembly of organelle genomes from whole genome data. PMID:28204566
Genotype-Specific Evolution of Hepatitis E Virus. PMID:28202767
Understanding cancer complexome using networks, spectral graph theory and multilayer framework. PMID:28155908
Noncontiguous finished genome sequence and description of Fusobacterium massiliense sp. nov. isolated from human duodenum. PMID:28116104
Biomartr: genomic data retrieval with R. PMID:28110292
Optical Trapping Nanometry of Hypermethylated CPG-Island DNA. PMID:28109529
Genome Analysis of a Novel Broad Host Range Proteobacteria Phage Isolated from a Bioreactor Treating Industrial Wastewater. PMID:28106814
Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts. PMID:28094347
McrA primers for the detection and quantification of the anaerobic archaeal methanotroph 'Candidatus Methanoperedens nitroreducens'. PMID:28084539
Duplicates, redundancies and inconsistencies in the primary nucleotide databases: a descriptive study. PMID:28077566
Avian malaria on Madagascar: bird hosts and putative vector mosquitoes of different Plasmodium lineages. PMID:28057063
T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes. PMID:28056784
PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data. PMID:28051068
Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PMID:28045932
Agrobacterium tumefaciens estC, Encoding an Enzyme Containing Esterase Activity, Is Regulated by EstR, a Regulator in the MarR Family. PMID:28036400
Phylogenetic congruence between subtropical trees and their associated fungi. PMID:28031793
Phosphoribosyl Diphosphate (PRPP): Biosynthesis, Enzymology, Utilization, and Metabolic Significance. PMID:28031352
VaProS: a database-integration approach for protein/genome information retrieval. PMID:28012137
Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters. PMID:27998268
MHC-dependent mate choice is linked to a trace-amine-associated receptor gene in a mammal. PMID:27941813
Identification of Beak and Feather Disease Virus in an Unusual Novel Host (Merops ornatus) Using Nested PCR. PMID:27932660
A diverse intrinsic antibiotic resistome from a cave bacterium. PMID:27929110
Uniclust databases of clustered and deeply annotated protein sequences and alignments. PMID:27899574
Assessing contamination of microalgal astaxanthin producer Haematococcus cultures with high-resolution melting curve analysis. PMID:27888475
Characterization of the Sucrose Phosphate Phosphatase (SPP) Isoforms from Arabidopsis thaliana and Role of the S6PPc Domain in Dimerization. PMID:27855180
Whole genome sequencing of Guzerá cattle reveals genetic variants in candidate genes for production, disease resistance, and heat tolerance. PMID:27853861
Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans. PMID:27852217
Comparative Genomic Analysis of Delftia tsuruhatensis MTQ3 and the Identification of Functional NRPS Genes for Siderophore Production. PMID:27847812
Double germline mutations in APC and BRCA2 in an individual with a pancreatic tumor. PMID:27838800
Draft genome sequence of pectic polysaccharide-degrading moderate thermophilic bacterium Geobacillus thermodenitrificans DSM 101594. PMID:27818089
muBLASTP: database-indexed protein sequence search on multicore CPUs. PMID:27809763
Expression of myogenes in longissimus dorsi muscle during prenatal development in commercial and local Piau pigs. PMID:27801482
Whole-Genome Sequence of Pseudomonas graminis Strain UASWS1507, a Potential Biological Control Agent and Biofertilizer Isolated in Switzerland. PMID:27795260
Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1016, a Potential Symbiotic Biofertilizer for Agriculture. PMID:27795259
De novo transcriptome assembly facilitates characterisation of fast-evolving gene families, MHC class I in the bank vole (Myodes glareolus). PMID:27782121
Multi-omic data integration enables discovery of hidden biological regularities. PMID:27782110
The state of play in higher eukaryote gene annotation. PMID:27773922
Cryo-EM structure of the large subunit of the spinach chloroplast ribosome. PMID:27762343
Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. PMID:27752045
A Clostridium difficile Cell Wall Glycopolymer Locus Influences Bacterial Shape, Polysaccharide Production and Virulence. PMID:27741317
A Conserved Structural Signature of the Homeobox Coding DNA in HOX genes. PMID:27739488
IMG/M: integrated genome and metagenome comparative data analysis system. PMID:27738135
Whole-Genome Sequence of Mesorhizobium hungaricum sp. nov. Strain UASWS1009, a Potential Resource for Agricultural and Environmental Uses. PMID:27738050
Whole-Genome Sequence of Pseudomonas xanthomarina Strain UASWS0955, a Potential Biological Agent for Agricultural and Environmental Uses. PMID:27738044
Whole-Genome Sequence of a Beak and Feather Disease Virus Isolate from a Fledgling Red-Capped Parrot (Purpureicephalus spurius). PMID:27738029
Probing the Depths of Biological Diversity During the Second Century of GENETICS. PMID:27729490
High Throughput Sequencing to Detect Differences in Methanotrophic Methylococcaceae and Methylocystaceae in Surface Peat, Forest Soil, and Sphagnum Moss in Cranesville Swamp Preserve, West Virginia, USA. PMID:27682082
Next generation sequencing data of a defined microbial mock community. PMID:27673566
Structural characterization reveals a novel bilobed architecture for the ectodomains of insect stage expressed Trypanosoma brucei PSSA-2 and Trypanosoma congolense ISA. PMID:27671214
A method for identification of highly conserved elements and evolutionary analysis of superphylum Alveolata. PMID:27645252
Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages. PMID:27642638
Analysis of genotype diversity and evolution of Dengue virus serotype 2 using complete genomes. PMID:27635316
Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex. PMID:27632983
Spatiotemporal microbial evolution on antibiotic landscapes. PMID:27609891
Flowers and Wild Megachilid Bees Share Microbes. PMID:27592345
Antimicrobial susceptibility and clarithromycin resistance patterns of Helicobacter pylori clinical isolates in Vietnam. PMID:27583131
The Impact of Oxytocin Gene Knockout on Sexual Behavior and Gene Expression Related to Neuroendocrine Systems in the Brain of Female Mice. PMID:27558735
Recent evolution of the salivary mucin MUC7. PMID:27558399
Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas. PMID:27557714
A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution. PMID:27557478
Genomes of Candidatus Wolbachia bourtzisii wDacA and Candidatus Wolbachia pipientis wDacB from the Cochineal Insect Dactylopius coccus (Hemiptera: Dactylopiidae). PMID:27543297
The complete genome sequence of the rumen methanogen Methanobrevibacter millerae SM9. PMID:27536339
Carboxylic ester hydrolases: Classification and database derived from their primary, secondary, and tertiary structures. PMID:27530203
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. PMID:27504778
Multiple independent transmission cycles of a tick-borne pathogen within a local host community. PMID:27498685
Wnt signal transduction pathways: modules, development and evolution. PMID:27490822
DNA barcoding and taxonomy: dark taxa and dark texts. PMID:27481786
The DAU cluster: a comparative analysis of 18 RHD alleles, some forming partial D antigens. PMID:27480171
Immune DNA signature of T-cell infiltration in breast tumor exomes. PMID:27452728
Subfunctionalization of peroxisome proliferator response elements accounts for retention of duplicated fabp1 genes in zebrafish. PMID:27421266
Twenty-Five New Viruses Associated with the Drosophilidae (Diptera). PMID:27375356
Mutations of Vasopressin Receptor 2 Including Novel L312S Have Differential Effects on Trafficking. PMID:27355191
Prevalence and Dynamics of Ribosomal DNA Micro-heterogeneity Are Linked to Population History in Two Contrasting Yeast Species. PMID:27345953
PEP_scaffolder: using (homologous) proteins to scaffold genomes. PMID:27334475
Peptide de novo sequencing of mixture tandem mass spectra. PMID:27329701
A taxonomic framework for cable bacteria and proposal of the candidate genera Electrothrix and Electronema. PMID:27324572
Comparative Protein Structure Modeling Using MODELLER. PMID:27322406
First description of clinical presentation of piscine orthoreovirus (PRV) infections in salmonid aquaculture in Chile and identification of a second genotype (Genotype II) of PRV. PMID:27296722
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. PMID:27296299
Evolution of the SpoIISABC Toxin-Antitoxin-Antitoxin System in Bacilli. PMID:27294956
SinEx DB: a database for single exon coding sequences in mammalian genomes. PMID:27278816
IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES). PMID:27264539
Bioinformatics analysis of the structural and evolutionary characteristics for toll-like receptor 15. PMID:27257554
Structural propensities of kinase family proteins from a Potts model of residue co-variation. PMID:27241634
The transcriptome of metamorphosing flatfish. PMID:27233904
A voltage-dependent chloride channel fine-tunes photosynthesis in plants. PMID:27216227
A natural frameshift mutation in Campanula EIL2 correlates with ethylene insensitivity in flowers. PMID:27215645
DNA polymorphism and selection at the bindin locus in three Strongylocentrotus sp. (Echinoidea). PMID:27176219
Complete Mitochondrial Genome Sequence of the Pezizomycete Pyronema confluens. PMID:27174271
Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum. PMID:27146851
Viral metagenomics applied to blood donors and recipients at high risk for blood-borne infections. PMID:27136432
systemsDock: a web server for network pharmacology-based prediction and analysis. PMID:27131384
Effect of Dietary Starch Source and Concentration on Equine Fecal Microbiota. PMID:27128793
Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions. PMID:27126702
Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes. PMID:27097561
The characterization of macroH2A beyond vertebrates supports an ancestral origin and conserved role for histone variants in chromatin. PMID:27082816
SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli. PMID:27067409
Conflicting genomic signals affect phylogenetic inference in four species of North American pines. PMID:27060161
Subtyping of Salmonella enterica Subspecies I Using Single-Nucleotide Polymorphisms in Adenylate Cyclase. PMID:27035032
ZIKA--How fast does this virus mutate? PMID:27029869
Genomic Insights into a New Citrobacter koseri Strain Revealed Gene Exchanges with the Virulence-Associated Yersinia pestis pPCP1 Plasmid. PMID:27014253
Ligand-binding specificity and promiscuity of the main lignocellulolytic enzyme families as revealed by active-site architecture analysis. PMID:27009476
Archaeal Community Changes Associated with Cultivation of Amazon Forest Soil with Oil Palm. PMID:27006640
High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis. PMID:26989153
R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring. PMID:26989149
The complete genome sequence of Eubacterium limosum SA11, a metabolically versatile rumen acetogen. PMID:26981167
The FAIR Guiding Principles for scientific data management and stewardship. PMID:26978244
Conserved antigenic sites between MERS-CoV and Bat-coronavirus are revealed through sequence analysis. PMID:26962326
Meloidogyne graminicola: a major threat to rice agriculture. PMID:26950515
High throughput sequencing of small RNAs transcriptomes in two Crassostrea oysters identifies microRNAs involved in osmotic stress response. PMID:26940974
High Resolution Melting Analysis Targeting hsp70 as a Fast and Efficient Method for the Discrimination of Leishmania Species. PMID:26928050
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes. PMID:26911872
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. PMID:26911818
Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies. PMID:26904016
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database. PMID:26903996
Genome size and ploidy influence angiosperm species' biomass under nitrogen and phosphorus limitation. PMID:26875784
Value, but high costs in post-deposition data curation. PMID:26861660
PrimerMapper: high throughput primer design and graphical assembly for PCR and SNP detection. PMID:26853558
Phaeoacremonium parasiticum phaeohyphomycosis in a patient with systemic lupus erythematosus treated successfully with surgical debridement and voriconazole: A case report and review of the literature. PMID:26839782
Cross-subtype detection of HIV-1 using reverse transcription and recombinase polymerase amplification. PMID:26821087
COMADRE: a global data base of animal demography. PMID:26814420
Real-Time PCR Quantification of Chloroplast DNA Supports DNA Barcoding of Plant Species. PMID:26800992
Multi-species sequence comparison reveals conservation of ghrelin gene-derived splice variants encoding a truncated ghrelin peptide. PMID:26792793
Developing of the Computer Method for Annotation of Bacterial Genes. PMID:26770195
Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements. PMID:26768901
Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake tsunami. PMID:26764021
Pleurochrysome: A Web Database of Pleurochrysis Transcripts and Orthologs Among Heterogeneous Algae. PMID:26746174
The Arabidopsis COX11 Homolog is Essential for Cytochrome c Oxidase Activity. PMID:26734017
Mitochondrial genome evolution and tRNA truncation in Acariformes mites: new evidence from eriophyoid mites. PMID:26732998
Biosynthesis of Essential Polyunsaturated Fatty Acids in Wheat Triggered by Expression of Artificial Gene. PMID:26694368
The Pratylenchus penetrans Transcriptome as a Source for the Development of Alternative Control Strategies: Mining for Putative Genes Involved in Parasitism and Evaluation of in planta RNAi. PMID:26658731
Identification and characterization of a -1 reading frameshift in the heavy chain constant region of an IgG1 recombinant monoclonal antibody produced in CHO cells. PMID:26652198
StreptomeDB 2.0--an extended resource of natural products produced by streptomycetes. PMID:26615197
Database resources of the National Center for Biotechnology Information. PMID:26615191
The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens. PMID:26578204
Karyotype differentiation in 19 species of river loach fishes (Nemacheilidae, Teleostei): extensive variability associated with rDNA and heterochromatin distribution and its phylogenetic and ecological interpretation. PMID:26573692
BioDB extractor: customized data extraction system for commonly used bioinformatics databases. PMID:26516349
Development of High Resolution Melting Analysis for the Diagnosis of Human Malaria. PMID:26507008
Identification of Novel and Conserved miRNAs from Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice. PMID:26506249
Evolution of the highly networked deubiquitinating enzymes USP4, USP15, and USP11. PMID:26503449
sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria. PMID:26503244
RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource. PMID:26500754
Developing expressed sequence tag libraries and the discovery of simple sequence repeat markers for two species of raspberry (Rubus L.). PMID:26499487
Emerging bacterial pathogens: the past and beyond. PMID:26493844
A Glimpse to Background and Characteristics of Major Molecular Biological Networks. PMID:26491677
Urban riverine environment is a source of multidrug-resistant and ESBL-producing clinically important Acinetobacter spp. PMID:26490931
CD and NMR investigation of collagen peptides mimicking a pathological Gly-Ser mutation and a natural interruption in a similar highly charged sequence context. PMID:26457583
miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs. PMID:26424084
The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity. PMID:26420832
Evidence of a deep viral host switch event with beak and feather disease virus infection in rainbow bee-eaters (Merops ornatus). PMID:26411487
Differential microRNA Analysis of Glandular Trichomes and Young Leaves in Xanthium strumarium L. Reveals Their Putative Roles in Regulating Terpenoid Biosynthesis. PMID:26406988
An expression analysis of markers of radiation-induced skin fibrosis and angiogenesis in wound healing disorders of the head and neck. PMID:26390925
Molecular Cloning and Functional Expression of the Equine K+ Channel KV11.1 (Ether à Go-Go-Related/KCNH2 Gene) and the Regulatory Subunit KCNE2 from Equine Myocardium. PMID:26376488
The Use of DNA Barcoding in Identification and Conservation of Rosewood (Dalbergia spp.). PMID:26375850
Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage. PMID:26369665
Dissecting Leishmania infantum Energy Metabolism - A Systems Perspective. PMID:26367006
Signaling Lymphocytic Activation Molecule Family Receptor Homologs in New World Monkey Cytomegaloviruses. PMID:26339044
Toward a Whole-Cell Model of Ribosome Biogenesis: Kinetic Modeling of SSU Assembly. PMID:26333594
Deep Sequencing of the Scutellaria baicalensis Georgi Transcriptome Reveals Flavonoid Biosynthetic Profiling and Organ-Specific Gene Expression. PMID:26317778
Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses. PMID:26304538
Mitochondrial Analysis of the Most Basal Canid Reveals Deep Divergence between Eastern and Western North American Gray Foxes (Urocyon spp.) and Ancient Roots in Pleistocene California. PMID:26288066
Next-generation sequencing in clinical virology: Discovery of new viruses. PMID:26279987
Comparative Genomics of Environmental and Clinical Stenotrophomonas maltophilia Strains with Different Antibiotic Resistance Profiles. PMID:26276674
Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix. PMID:26269100
pGenN, a gene normalization tool for plant genes and proteins in scientific literature. PMID:26258475
Tryptophan-Independent Indole-3-Acetic Acid Synthesis: Critical Evaluation of the Evidence. PMID:26251310
Recombination of chl-fus gene (Plastid Origin) downstream of hop: a locus of chromosomal instability. PMID:26238241
Genetic evidence for contribution of human dispersal to the genetic diversity of EBA-175 in Plasmodium falciparum. PMID:26231699
Analysis artefacts of the INS-IGF2 fusion transcript. PMID:26220792
Genetic Evidence Supports the Multiethnic Character of Teopancazco, a Neighborhood Center of Teotihuacan, Mexico (AD 200-600). PMID:26200455
Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach. PMID:26194794
Pax2/5/8 and Pax6 alternative splicing events in basal chordates and vertebrates: a focus on paired box domain. PMID:26191073
A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.). PMID:26186364
Strong phylogenetic signals and phylogenetic niche conservatism in ecophysiological traits across divergent lineages of Magnoliaceae. PMID:26179320
Macaria mirthae Vargas et al (Lepidoptera: Geometridae): Confirmation of the Use of an Invasive Host Plant in the Northern Atacama Desert of Chile Based on DNA Barcodes. PMID:26174961
The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster. PMID:26172158
Comparative Genomic Analysis of Asian Haemorrhagic Septicaemia-Associated Strains of Pasteurella multocida Identifies More than 90 Haemorrhagic Septicaemia-Specific Genes. PMID:26151935
A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene. PMID:26114108
DNA Barcoding and Pharmacovigilance of Herbal Medicines. PMID:26076652
Advances in long noncoding RNAs: identification, structure prediction and function annotation. PMID:26072035
Comparative genomic and phenomic analysis of Clostridium difficile and Clostridium sordellii, two related pathogens with differing host tissue preference. PMID:26059449
An Ebola virus-centered knowledge base. PMID:26055098
Arterivirus nsp12 versus the coronavirus nsp16 2'-O-methyltransferase: comparison of the C-terminal cleavage products of two nidovirus pp1ab polyproteins. PMID:26041874
Identification of Xenologs and Their Characteristic Low Expression Levels in the Cyanobacterium Synechococcus elongatus. PMID:26040248
Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant. PMID:26020781
Beyond the EDGE with EDAM: Prioritising British Plant Species According to Evolutionary Distinctiveness, and Accuracy and Magnitude of Decline. PMID:26018568
Databases for Microbiologists. PMID:26013493
Bioinformatical analysis of the sequences, structures and functions of fungal polyketide synthase product template domains. PMID:25995122
Local amino acid sequence patterns dominate the heterogeneous phenotype for the collagen connective tissue disease Osteogenesis Imperfecta resulting from Gly mutations. PMID:25980613
Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics. PMID:25979752
A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis. PMID:25977815
Tree of Sex: a database of sexual systems. PMID:25977773
Optimization of translation profiles enhances protein expression and solubility. PMID:25965266
BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ. PMID:25960870
Re-evaluation of dioxygenase gene phylogeny for the development and validation of a quantitative assay for environmental aromatic hydrocarbon degraders. PMID:25944871
Advances in genetics and genomics: use and limitations in achieving malaria elimination goals. PMID:25943157
RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps. PMID:25940619
Characterization and Genomic Analysis of Quinolone-Resistant Delftia sp. 670 Isolated from a Patient Who Died from Severe Pneumonia. PMID:25935202
Multiple genetic lineages challenge the monospecific status of the West African endemic frog family Odontobatrachidae. PMID:25928080
Using populations of human and microbial genomes for organism detection in metagenomes. PMID:25926546
MiXCR: software for comprehensive adaptive immunity profiling. PMID:25924071
gbpA as a Novel qPCR Target for the Species-Specific Detection of Vibrio cholerae O1, O139, Non-O1/Non-O139 in Environmental, Stool, and Historical Continuous Plankton Recorder Samples. PMID:25915771
Molecular conservation of metazoan gut formation: evidence from expression of endomesoderm genes in Capitella teleta (Annelida). PMID:25908956
Hox genes pattern the anterior-posterior axis of the juvenile but not the larva in a maximally indirect developing invertebrate, Micrura alaskensis (Nemertea). PMID:25888821
Transcriptome characterization of three wild Chinese Vitis uncovers a large number of distinct disease related genes. PMID:25888081
CoMeta: classification of metagenomes using k-mers. PMID:25884504
Bioinformatic identification and expression analysis of banana microRNAs and their targets. PMID:25856313
BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies. PMID:25833955
Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen. PMID:25814602
Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types. PMID:25810482
Assessing the effects of data selection and representation on the development of reliable E. coli sigma 70 promoter region predictors. PMID:25803493
Lineage-specific loss of FGF17 within the avian orders Galliformes and Passeriformes. PMID:25791492
Quality scores for 32,000 genomes. PMID:25780509
The complete genome sequence of the rumen methanogen Methanobacterium formicicum BRM9. PMID:25780506
Silent mutations at codons 65 and 66 in reverse transcriptase alleviate indel formation and restore fitness in subtype B HIV-1 containing D67N and K70R drug resistance mutations. PMID:25765644
mycoCLAP, the database for characterized lignocellulose-active proteins of fungal origin: resource and text mining curation support. PMID:25754864
A wheat ABC transporter contributes to both grain formation and mycotoxin tolerance. PMID:25732534
Complementary amplicon-based genomic approaches for the study of fungal communities in humans. PMID:25706290
Improved data analysis for the MinION nanopore sequencer. PMID:25686389
Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly. PMID:25674789
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. PMID:25666585
The Putative mevalonate diphosphate decarboxylase from Picrophilus torridus is in reality a mevalonate-3-kinase with high potential for bioproduction of isobutene. PMID:25636853
Endosymbiotic candidates for parasitoid defense in exotic and native New Zealand weevils. PMID:25613091
Identification of a novel human rhinovirus C type by antibody capture VIDISCA-454. PMID:25606972
Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data. PMID:25591752
Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota. PMID:25538694
Mitochondrial genomes of the Baltic clam Macoma balthica (Bivalvia: Tellinidae): setting the stage for studying mito-nuclear incompatibilities. PMID:25527898
Group-specific multiplex PCR detection systems for the identification of flying insect prey. PMID:25525799
Geneious! Simplified genome skimming methods for phylogenetic systematic studies: A case study in Oreocarya (Boraginaceae). PMID:25506521
GSDS 2.0: an upgraded gene feature visualization server. PMID:25504850
Low frequency of paleoviral infiltration across the avian phylogeny. PMID:25496498
Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis. PMID:25480015
Sequence analysis of origins of replication in the Saccharomyces cerevisiae genomes. PMID:25477864
Potential mechanism of action of meso-dihydroguaiaretic acid on Mycobacterium tuberculosis H37Rv. PMID:25474289
Fe-S proteins that regulate gene expression. PMID:25450978
Universal internucleotide statistics in full genomes: a footprint of the DNA structure and packaging? PMID:25438044
Using VisANT to Analyze Networks. PMID:25422679
The evolutionary fate of the horizontally transferred agrobacterial mikimopine synthase gene in the genera Nicotiana and Linaria. PMID:25420106
ProteomeScout: a repository and analysis resource for post-translational modifications and proteins. PMID:25414335
Comparative genomics of DtxR family regulons for metal homeostasis in Archaea. PMID:25404694
Beyond protein expression, MOPED goes multi-omics. PMID:25404128
Database resources of the National Center for Biotechnology Information. PMID:25398906
Genetic and epidemiological insights into the emergence of peste des petits ruminants virus (PPRV) across Asia and Africa. PMID:25391314
Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. PMID:25384563
The Signature Sequence Region of the Human Drug Transporter Organic Anion Transporting Polypeptide 1B1 Is Important for Protein Surface Expression. PMID:25371825
Designing a SCAR molecular marker for monitoring Trichoderma cf. harzianum in experimental communities. PMID:25367789
Evolution and targeting of Omp85 homologs in the chloroplast outer envelope membrane. PMID:25352854
How does molecular-assisted identification affect our estimation of α, β and γ biodiversity? An example from understory red seaweeds (Rhodophyta) of Laminaria kelp forests in Brittany, France. PMID:25351554
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. PMID:25348402
An antimicrobial protein of the gut symbiont Bacteroides fragilis with a MACPF domain of host immune proteins. PMID:25339613
Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation. PMID:25336616
Molecular evolutionary and epidemiological dynamics of genotypes 1G and 2B of rubella virus. PMID:25329480
Molecular evolution and transcriptional regulation of the oilseed rape proline dehydrogenase genes suggest distinct roles of proline catabolism during development. PMID:25326771
Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam. PMID:25293379
Root foraging elicits niche complementarity-dependent yield advantage in the ancient 'three sisters' (maize/bean/squash) polyculture. PMID:25274551
Nectar yeasts in the tall Larkspur Delphinium barbeyi (Ranunculaceae) and effects on components of pollinator foraging behavior. PMID:25272164
Complex polymorphisms in the Plasmodium falciparum multidrug resistance protein 2 gene and its contribution to antimalarial response. PMID:25267670
Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae. PMID:25240328
Expanding the Halohydrin Dehalogenase Enzyme Family: Identification of Novel Enzymes by Database Mining. PMID:25239895
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions. PMID:25231498
Optimization of extraction of circulating RNAs from plasma--enabling small RNA sequencing. PMID:25229651
Phylodynamic reconstruction of O CATHAY topotype foot-and-mouth disease virus epidemics in the Philippines. PMID:25209700
Non-contiguous finished genome sequence and description of Anaerococcus provenciensis sp. nov. PMID:25197492
Evolution and comparative genomics of Campylobacter jejuni ST-677 clonal complex. PMID:25193305
Culturable heavy metal-resistant and plant growth promoting bacteria in V-Ti magnetite mine tailing soil from Panzhihua, China. PMID:25188470
Novel X-linked genes revealed by quantitative polymerase chain reaction in the green anole, Anolis carolinensis. PMID:25172916
Defining the estimated core genome of bacterial populations using a Bayesian decision model. PMID:25144616
Characterization of actinobacteria associated with three ant-plant mutualisms. PMID:25096989
Bioinformatic approaches to augment study of epithelial-to-mesenchymal transition in lung cancer. PMID:25096367
Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency. PMID:25074380
Characterization of the Whole-Genome Sequence of a Beak and Feather Disease Virus Isolate from a Mallee Ringneck Parrot (Barnardius zonarius barnardi). PMID:25059866
The structural code of cyanobacterial genomes. PMID:25056315
Suffix tree searcher: exploration of common substrings in large DNA sequence sets. PMID:25053142
A robust HIV-1 viral load detection assay optimized for Indian sub type C specific strains and resource limiting setting. PMID:25028193
Protein variants form a system of networks: microdiversity of IMP metallo-beta-lactamases. PMID:25013948
Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea. PMID:24999826
Seasonal changes in Thrips tabaci population structure in two cultivated hosts. PMID:24992484
PubServer: literature searches by homology. PMID:24957597
Standardized metadata for human pathogen/vector genomic sequences. PMID:24936976
IFIM: a database of integrated fitness information for microbial genes. PMID:24923821
dbCerEx: a web-based database for the analysis of cervical cancer transcriptomes. PMID:24918550
MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data. PMID:24910945
Molecular and phenotypic data support the recognition of the Wakatobi Flowerpecker (Dicaeum kuehni) from the unique and understudied Sulawesi region. PMID:24896822
The Encyclopedia of Life v2: Providing Global Access to Knowledge About Life on Earth. PMID:24891832
Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan. PMID:24888649
A highly conserved WDYPKCDRA epitope in the RNA directed RNA polymerase of human coronaviruses can be used as epitope-based universal vaccine design. PMID:24884408
Mammalian COPII coat component SEC24C is required for embryonic development in mice. PMID:24876386
Reduced ribosomes of the apicoplast and mitochondrion of Plasmodium spp. and predicted interactions with antibiotics. PMID:24850912
Mitochondrial genome of Phlebia radiata is the second largest (156 kbp) among fungi and features signs of genome flexibility and recent recombination events. PMID:24824642
Immersing undergraduate students into research on the metagenomics of the plant rhizosphere: a pedagogical strategy to engage civic-mindedness and retain undergraduates in STEM. PMID:24817868
Genetic association between the dopamine D1-receptor gene and paranoid schizophrenia in a northern Han Chinese population. PMID:24790447
A Framework for Content-based Retrieval of EEG with Applications to Neuroscience and Beyond. PMID:24770451
Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale. PMID:24763141
The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments. PMID:24723913
Zearalenone lactonohydrolase activity in Hypocreales and its evolutionary relationships within the epoxide hydrolase subset of a/b-hydrolases. PMID:24708405
FixPred: a resource for correction of erroneous protein sequences. PMID:24705206
Evidence of positive selection in mitochondrial complexes I and V of the African elephant. PMID:24695069
Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering. PMID:24682815
The eGenVar data management system--cataloguing and sharing sensitive data and metadata for the life sciences. PMID:24682735
Visual ModuleOrganizer: a graphical interface for the detection and comparative analysis of repeat DNA modules. PMID:24678954
Comparative genomics for mycobacterial peptidoglycan remodelling enzymes reveals extensive genetic multiplicity. PMID:24661741
Prevalence of transcription factors in ascomycete and basidiomycete fungi. PMID:24650355
Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process. PMID:24649854
DBatVir: the database of bat-associated viruses. PMID:24647629
Global patterns of abundance, diversity and community structure of the Aminicenantes (candidate phylum OP8). PMID:24637619
Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697
Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs. PMID:24628983
in silico identification of protein-protein interactions in Silkworm, Bombyx mori. PMID:24616555
Activation of phenotypic subpopulations in response to ciprofloxacin treatment in Acinetobacter baumannii. PMID:24612352
Utilization of glyphosate as phosphate source: biochemistry and genetics of bacterial carbon-phosphorus lyase. PMID:24600043
Data management in the modern structural biology and biomedical research environment. PMID:24590705
Population structure and evolution of Rhinoviruses. PMID:24586469
CDSbank: taxonomy-aware extraction, selection, renaming and formatting of protein-coding DNA or amino acid sequences. PMID:24580755
Molecular diagnostics on the toxigenic potential of Fusarium spp. plant pathogens. PMID:24575830
Origin and evolution of metal P-type ATPases in Plantae (Archaeplastida). PMID:24575101
A new Hermeuptychia (Lepidoptera, Nymphalidae, Satyrinae) is sympatric and synchronic with H. sosybius in southeast US coastal plains, while another new Hermeuptychia species - not hermes - inhabits south Texas and northeast Mexico. PMID:24574857
Statistical tests to identify appropriate types of nucleotide sequence recoding in molecular phylogenetics. PMID:24564837
A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units. PMID:24564714
Mutational robustness accelerates the origin of novel RNA phenotypes through phenotypic plasticity. PMID:24559998
pY RNA1-s2: a highly retina-enriched small RNA that selectively binds to Matrin 3 (Matr3). PMID:24558381
High-throughput sequence typing reveals genetic differentiation and host specialization among populations of the Borrelia burgdorferi species complex that infect rodents. PMID:24533116
Transport distance of invertebrate environmental DNA in a natural river. PMID:24523940
Sequencing artifacts in the type A influenza databases and attempts to correct them. PMID:24512607
Genetics of proteasome diseases. PMID:24490108
The first endemic West African vertebrate family - a new anuran family highlighting the uniqueness of the Upper Guinean biodiversity hotspot. PMID:24485269
Whole-Genome Sequence Characterization of a Beak and Feather Disease Virus in a Wild Regent Parrot (Polytelis anthopeplus monarchoides). PMID:24482518
Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways. PMID:24475038
CoryneBase: Corynebacterium genomic resources and analysis tools at your fingertips. PMID:24466021
Bioinformatics analysis of bacterial annexins--putative ancestral relatives of eukaryotic annexins. PMID:24454864
Reviewing population studies for forensic purposes: Dog mitochondrial DNA. PMID:24453568
GeneSV - an Approach to Help Characterize Possible Variations in Genomic and Protein Sequences. PMID:24453480
The double-stranded transcriptome of Escherichia coli. PMID:24453212
Design and synthesis of heterocyclic cations for specific DNA recognition: from AT-rich to mixed-base-pair DNA sequences. PMID:24422528
Modified 'one amino acid-one codon' engineering of high GC content TaqII-coding gene from thermophilic Thermus aquaticus results in radical expression increase. PMID:24410856
Photosystem II photochemistry and phycobiliprotein of the red algae Kappaphycus alvarezii and their implications for light adaptation. PMID:24380080
Global catalogue of microorganisms (gcm): a comprehensive database and information retrieval, analysis, and visualization system for microbial resources. PMID:24377417
Time for the zebrafish ENCODE. PMID:24371190
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants. PMID:24334350
INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles. PMID:24324765
Online exercise for the design and simulation of PCR and PCR-RFLP experiments. PMID:24314313
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. PMID:24306534
BacMet: antibacterial biocide and metal resistance genes database. PMID:24304895
Virus Variation Resource--recent updates and future directions. PMID:24304891
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). PMID:24293654
Building a DNA barcode reference library for the true butterflies (Lepidoptera) of Peninsula Malaysia: what about the subspecies? PMID:24282514
Network portal: a database for storage, analysis and visualization of biological networks. PMID:24271392
Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors. PMID:24243805
PATRIC, the bacterial bioinformatics database and analysis resource. PMID:24225323
GenBank. PMID:24217914
Current status and new features of the Consensus Coding Sequence database. PMID:24217909
Phylogenetic position and subspecies divergence of the endangered New Zealand Dotterel (Charadrius obscurus). PMID:24205094
POGO-DB--a database of pairwise-comparisons of genomes and conserved orthologous genes. PMID:24198250
DDBJ progress report: a new submission system for leading to a correct annotation. PMID:24194602
Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules. PMID:24191063
Diet alters both the structure and taxonomy of the ovine gut microbial ecosystem. PMID:24170804
IMG 4 version of the integrated microbial genomes comparative analysis system. PMID:24165883
The mouse Gene Expression Database (GXD): 2014 update. PMID:24163257
A new piece in the puzzle of the novel avian-origin influenza A (H7N9) virus. PMID:24160334
Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data. PMID:24148944
Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals. PMID:24119094
Role of key salt bridges in thermostability of G. thermodenitrificans EstGtA2: distinctive patterns within the new bacterial lipolytic enzyme subfamily XIII.2 [corrected]. PMID:24116134
Structural basis for the divergent evolution of influenza B virus hemagglutinin. PMID:24074573
Reproductive isolation revealed in preliminary crossbreeding experiments using field collected Triatoma dimidiata (Hemiptera: Reduviidae) from three ITS-2 defined groups. PMID:24041592
Genome-wide discovery and information resource development of DNA polymorphisms in cassava. PMID:24040164
A combination of improved differential and global RNA-seq reveals pervasive transcription initiation and events in all stages of the life-cycle of functional RNAs in Propionibacterium acnes, a major contributor to wide-spread human disease. PMID:24034785
Molecular networking as a dereplication strategy. PMID:24025162
The Complete Genome Sequence of Methanobrevibacter sp. AbM4. PMID:23991254
Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii. PMID:23977017
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. PMID:23955518
A novel prokaryotic promoter identified in the genome of some monopartite begomoviruses. PMID:23936138
New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria. PMID:23913324
Whole-genome analysis of piscine reovirus (PRV) shows PRV represents a new genus in family Reoviridae and its genome segment S1 sequences group it into two separate sub-genotypes. PMID:23844948
Open access to tree genomes: the path to a better forest. PMID:23796049
aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. PMID:23677614
WebScipio: Reconstructing alternative splice variants of eukaryotic proteins. PMID:23677611
Navigating the changing learning landscape: perspective from bioinformatics.ca. PMID:23515468
Detecting sequence homology at the gene cluster level with MultiGeneBlast. PMID:23412913
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection. PMID:23203983
Comparative protein structure modeling using Modeller. PMID:18428767 -
GenBank
PubMed citations: 390.
390 articles citing: GenBank
Comparative genomics of Leuconostoc lactis strains isolated from human gastrointestinal system and fermented foods microbiomes. PMID:35918643
Human Coronavirus Spike Protein Based Multi-Epitope Vaccine against COVID-19 and Potential Future Zoonotic Coronaviruses by Using Immunoinformatic Approaches. PMID:35891314
Evolutionary traits of Tick-borne encephalitis virus: Pervasive non-coding RNA structure conservation and molecular epidemiology. PMID:35822110
Soil Microbial Community Composition and Tolerance to Contaminants in an Urban Brownfield Site. PMID:35802172
Curation of a reference database of COI sequences for insect identification through DNA metabarcoding: COins. PMID:35796594
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data. PMID:35773532
Microbiomes of bloom-forming Phaeocystis algae are stable and consistently recruited, with both symbiotic and opportunistic modes. PMID:35764675
Isolation of Listeria ivanovii from Bulk-Tank Milk of Sheep and Goat Farms-From Clinical Work to Bioinformatics Studies: Prevalence, Association with Milk Quality, Antibiotic Susceptibility, Predictors, Whole Genome Sequence and Phylogenetic Relationships. PMID:35741392
Characterization of triatomine bloodmeal sources using direct Sanger sequencing and amplicon deep sequencing methods. PMID:35715521
A de novo genome assembly of cultivated Prunus persica cv. 'Sovetskiy'. PMID:35714114
Utilisation of Oxford Nanopore sequencing to generate six complete gastropod mitochondrial genomes as part of a biodiversity curriculum. PMID:35705661
In Vitro Assessment of Bio-Functional Properties from Lactiplantibacillus plantarum Strains. PMID:35678687
Maintenance and dissemination of avian-origin influenza A virus within the northern Atlantic Flyway of North America. PMID:35666770
Brown Dog Tick (Rhipicephalus sanguineus Sensu Lato) Infection with Endosymbiont and Human Pathogenic Rickettsia spp., in Northeastern México. PMID:35627785
Lake microbiome and trophy fluctuations of the ancient hemp rettery. PMID:35614182
Higher levels of Bifidobacteria and tumor necrosis factor in children with drug-resistant epilepsy are associated with anti-seizure response to the ketogenic diet. PMID:35598439
EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts. PMID:35561186
Maternally Instigated Diapause in Aedes albopictus: Coordinating Experience and Internal State for Survival in Variable Environments. PMID:35548691
Precision Probiotics in Agroecosystems: Multiple Strategies of Native Soil Microbiotas for Conquering the Competitor Ralstonia solanacearum. PMID:35469423
Genetic relatedness and morphology as drivers of interspecific dominance hierarchy in hummingbirds. PMID:35469196
Metagenomic sequencing reveals time, host, and body compartment-specific viral dynamics after lung transplantation. PMID:35459224
Diversity and ecology of Radiolaria in modern oceans. PMID:35412019
SARS-CoV-2 spike protein-, main protease- and papain-like-protease-targeting peptides from seed proteins following gastrointestinal digestion: An in silico study. PMID:35403082
Deciphering Genomes: Genetic Signatures of Plant-Associated Micromonospora. PMID:35401599
Expression and structure of the Chlamydia trachomatis DksA ortholog. PMID:35388904
Soil Origin and Plant Genotype Modulate Switchgrass Aboveground Productivity and Root Microbiome Assembly. PMID:35384699
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture. PMID:35331330
Deciphering Active Prophages from Metagenomes. PMID:35323045
Salmonella enterica subsp. enterica Welikade: guideline for phylogenetic analysis of serovars rarely involved in foodborne outbreaks. PMID:35303794
Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. PMID:35300479
Function and Application of the CRISPR-Cas System in the Plant Pathogen Erwinia amylovora. PMID:35285707
In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs. PMID:35223533
A Highly Specific Holin-Mediated Mechanism Facilitates the Secretion of Lethal Toxin TcsL in Paeniclostridiumsordellii. PMID:35202151
High Prevalence and Diversity of Caliciviruses in a Community Setting Determined by a Metagenomic Approach. PMID:35196791
Morpho-physiological adaptations of Leptocylindrus aporus and L. hargravesii to phosphate limitation in the northern Adriatic. PMID:35177689
De Novo Assembly and Annotation of the Vaginal Metatranscriptome Associated with Bacterial Vaginosis. PMID:35163545
Comparison of Magnoliaceae Plastomes: Adding Neotropical Magnolia to the Discussion. PMID:35161429
Identification and Characterization of a Novel Plasmid-Encoded Laccase-Like Multicopper Oxidase from Ochrobactrum sp. BF15 Isolated from an On-Farm Bio-Purification System. PMID:35136375
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PMID:35085271
Wild Boars as Reservoir of Highly Virulent Clone of Hybrid Shiga Toxigenic and Enterotoxigenic Escherichia coli Responsible for Edema Disease, France. PMID:35075992
Konateibacter massiliensis gen. nov. sp. nov. and Paenibacillus faecalis sp. nov., Two New Species Isolated from the Stool Samples of Infants Suffering from Marasmus. PMID:35059831
Complete Genome Sequence, Molecular Characterization and Phylogenetic Relationships of a Novel Tern Atadenovirus. PMID:35056480
In Silico Research of New Therapeutics Rotenoids Derivatives against Leishmania amazonensis Infection. PMID:35053132
Severe Acute Respiratory Syndrome Type 2-Causing Coronavirus: Variants and Preventive Strategies. PMID:35037418
Enrichment of phosphate-accumulating organisms (PAOs) in a microfluidic model biofilm system by mimicking a typical aerobic granular sludge feast/famine regime. PMID:35032186
Seed traits matter-Endozoochoric dispersal through a pervasive mobile linker. PMID:35003686
slag: A program for seeded local assembly of genes in complex genomes. PMID:34995394
The Pseudomonas aeruginosa homeostasis enzyme AlgL clears the periplasmic space of accumulated alginate during polymer biosynthesis. PMID:34990713
Expression, Regulation, and Functions of the Galectin-16 Gene in Human Cells and Tissues. PMID:34944551
NGS read classification using AI. PMID:34936673
Pandemic-scale phylogenetics. PMID:34927180
Tiny wasps, huge diversity - A review of German Pteromalidae with new generic and species records (Hymenoptera: Chalcidoidea). PMID:34916873
Fungal diversity notes 1387-1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa. PMID:34899100
A systematic review and meta-analysis of the potential non-human animal reservoirs and arthropod vectors of the Mayaro virus. PMID:34898602
ORPER: A Workflow for Constrained SSU rRNA Phylogenies. PMID:34828348
Comparing whole-genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures. PMID:34824813
Customization of a DADA2-based pipeline for fungal internal transcribed spacer 1 (ITS1) amplicon data sets. PMID:34813499
Mining of Cyanobacterial Genomes Indicates Natural Product Biosynthetic Gene Clusters Located in Conjugative Plasmids. PMID:34803938
Land use and life history constrain adaptive genetic variation and reduce the capacity for climate change adaptation in turtles. PMID:34794393
First report of mitochondrial COI in foraminifera and implications for DNA barcoding. PMID:34772985
Two GH16 Endo-1,3-β-D-Glucanases from Formosa agariphila and F. algae Bacteria Have Complete Different Modes of Laminarin Digestion. PMID:34724141
Survey of SARS-CoV-2 genetic diversity in two major Brazilian cities using a fast and affordable Sanger sequencing strategy. PMID:34718131
Recombinant expression of insoluble enzymes in Escherichia coli: a systematic review of experimental design and its manufacturing implications. PMID:34717620
Discovery of a Novel Glucuronan Lyase System in Trichoderma parareesei. PMID:34705548
Variable Proportions of Phylogenetic Clustering and Low Levels of Antiviral Drug Resistance among the Major HBV Sub-Genotypes in the Middle East and North Africa. PMID:34684283
Music of metagenomics-a review of its applications, analysis pipeline, and associated tools. PMID:34657989
ESC: a comprehensive resource for SARS-CoV-2 immune escape variants. PMID:34643704
A Genomic Survey of Mayetiola destructor Mobilome Provides New Insights into the Evolutionary History of Transposable Elements in the Cecidomyiid Midges. PMID:34634072
Collinsella ihumii sp. nov., a new anaerobic bacterium isolated from human stool. PMID:34628511
Mapping the glycosyltransferase fold landscape using interpretable deep learning. PMID:34580305
Conservation in the Iron Responsive Element Family. PMID:34573347
Evidence for interannual persistence of infectious influenza A viruses in Alaska wetlands. PMID:34525758
Effects of consumer surface sterilization on diet DNA metabarcoding data of terrestrial invertebrates in natural environments and feeding trials. PMID:34522358
A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism. PMID:34466296
A New Rapid Method for the Authentication of Common Octopus (Octopus vulgaris) in Seafood Products Using Recombinase Polymerase Amplification (RPA) and Lateral Flow Assay (LFA). PMID:34441601
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Salvaging high-quality genomes of microbial species from a meromictic lake using a hybrid sequencing approach. PMID:34426638
Hidden Viral Sequences in Public Sequencing Data and Warning for Future Emerging Diseases. PMID:34399612
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes. PMID:34379107
Cloud Computing Enabled Big Multi-Omics Data Analytics. PMID:34376975
Allosteric regulation within the highly interconnected structural scaffold of AraC/XylS homologs tolerates a wide range of amino acid changes. PMID:34369028
Evidence for UV-green dichromacy in the basal hymenopteran Sirex noctilio (Siricidae). PMID:34341410
Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species. PMID:34326830
The genome of the Pyrenean desman and the effects of bottlenecks and inbreeding on the genomic landscape of an endangered species. PMID:34295371
The rates of global bacterial and archaeal dispersal. PMID:34282284
Constructing small genome graphs via string compression. PMID:34252955
Polysomal mRNA Association and Gene Expression in Trypanosoma brucei. PMID:34250262
Molecular Taxonomy and Diversification of Atlantic Skates (Chondrichthyes, Rajiformes): Adding More Pieces to the Puzzle of Their Evolutionary History. PMID:34206388
Plastome and phylogenetic relationship of the woody buckwheat Fagopyrum tibeticum in the Qinghai-Tibet Plateau. PMID:34195504
Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus. PMID:34188046
Insights into the phylogeny and transcriptional response of serine proteases in a halotolerant cyanobacterium Halothece sp. PCC7418. PMID:34184613
Color Polymorphism is a Driver of Diversification in the Lizard Family Lacertidae. PMID:34146110
A subterranean adaptive radiation of amphipods in Europe. PMID:34140494
Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. PMID:34108477
Genome Reduction and Secondary Metabolism of the Marine Sponge-Associated Cyanobacterium Leptothoe. PMID:34073758
Genomics of Adaptations in Ungulates. PMID:34072591
Isolation and Characterization of Capnocytophaga bilenii sp. nov., a Novel Capnocytophaga Species Detected in a Gingivitis Subject. PMID:34062778
Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants. PMID:34032263
ML-AdVInfect: A Machine-Learning Based Adenoviral Infection Predictor. PMID:34026828
Historical biogeography, systematics, and integrative taxonomy of the non-Ethiopian speckled pelage brush-furred rats (Lophuromys flavopunctatus group). PMID:34011264
Microbiome and oral squamous cell carcinoma: a possible interplay on iron metabolism and its impact on tumor microenvironment. PMID:34002353
Spatial phylogenetics of butterflies in relation to environmental drivers and angiosperm diversity across North America. PMID:33997666
Precise Species Detection in Traditional Herbal Patent Medicine, Qingguo Wan, Using Shotgun Metabarcoding. PMID:33995010
Molecular taxonomy confirms that the northeastern Atlantic and Mediterranean Sea harbor a single lancelet, Branchiostoma lanceolatum (Pallas, 1774) (Cephalochordata: Leptocardii: Branchiostomatidae). PMID:33956890
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3. PMID:33944776
Learning vector quantization as an interpretable classifier for the detection of SARS-CoV-2 types based on their RNA sequences. PMID:33935376
Evidence for Range Expansion and Origins of an Invasive Hornet Vespa bicolor (Hymenoptera, Vespidae) in Taiwan, with Notes on Its Natural Status. PMID:33918421
Environment, phylogeny, and photosynthetic pathway as determinants of leaf traits in savanna and forest graminoid species in central Brazil. PMID:33885981
Arena3Dweb: interactive 3D visualization of multilayered networks. PMID:33885790
In Silico Identification of Multi-target Anti-SARS-CoV-2 Peptides from Quinoa Seed Proteins. PMID:33867899
Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data. PMID:33864056
Liddle Syndrome due to a Novel c.1713 Deletion in the Epithelial Sodium Channel β-Subunit in a Normotensive Adolescent. PMID:33851023
Metabolic pathways inferred from a bacterial marker gene illuminate ecological changes across South Pacific frontal boundaries. PMID:33850115
Isolation and Description of Catonella massiliensis sp. nov., a Novel Catonella Species, Isolated from a Stable Periodontitis Subject. PMID:33808593
New Species of Soldier Fly-Sargus bipunctatus (Scopoli, 1763) (Diptera: Stratiomyidae), Recorded from a Human Corpse in Europe-A Case Report. PMID:33808078
Does Saccharomyces cerevisiae Require Specific Post-Translational Silencing against Leaky Translation of Hac1up? PMID:33802931
Taxonomic Identification of Different Species of the Genus Aeromonas by Whole-Genome Sequencing and Use of Their Species-Specific β-Lactamases as Phylogenetic Markers. PMID:33800590
The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution. PMID:33796742
The complete chloroplast genome of Toona sinensis, an important economic and medicinal plant endemic in China. PMID:33796726
Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes. PMID:33781078
Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics. PMID:33755013
A multiomics approach to identify host-microbe alterations associated with infection severity in diabetic foot infections: a pilot study. PMID:33753735
Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore-Washington metropolitan area. PMID:33749660
Mucin O-glycans suppress quorum-sensing pathways and genetic transformation in Streptococcus mutans. PMID:33737747
Vaccinomics approach for scheming potential epitope-based peptide vaccine by targeting l-protein of Marburg virus. PMID:33717824
Potentially Toxic Planktic and Benthic Cyanobacteria in Slovenian Freshwater Bodies: Detection by Quantitative PCR. PMID:33670338
Isolation and Characterization of Kingella bonacorsii sp. nov., A Novel Kingella Species Detected in a Stable Periodontitis Subject. PMID:33669894
Cytotoxic Fractions from Hechtia glomerata Extracts and p-Coumaric Acid as MAPK Inhibitors. PMID:33669666
The Atypical Kinase RIOK3 Limits RVFV Propagation and Is Regulated by Alternative Splicing. PMID:33652597
Characterization of hospital airborne SARS-CoV-2. PMID:33637076
Applications of Protein Secondary Structure Algorithms in SARS-CoV-2 Research. PMID:33617253
Word Entropy-Based Approach to Detect Highly Variable Genetic Markers for Bacterial Genotyping. PMID:33613503
Dynamic Molecular Epidemiology Reveals Lineage-Associated Single-Nucleotide Variants That Alter RNA Structure in Chikungunya Virus. PMID:33567556
Ethanol Production from Wheat Straw Hydrolysate by Issatchenkia Orientalis Isolated from Waste Cooking Oil. PMID:33562172
Characterizing and Evaluating the Zoonotic Potential of Novel Viruses Discovered in Vampire Bats. PMID:33562073
Examining the utility of DNA barcodes for the identification of tallgrass prairie flora. PMID:33552747
PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA viruses. PMID:33547380
Anaerococcus urinimassiliensis sp. nov., a new bacterium isolated from human urine. PMID:33514860
Specificities and Synergistic Actions of Novel PL8 and PL7 Alginate Lyases from the Marine Fungus Paradendryphiella salina. PMID:33503820
Computing Cellulase Kinetics with a Two-Domain Linear Interaction Energy Approach. PMID:33490814
Modeling the Influenza A NP-vRNA-Polymerase Complex in Atomic Detail. PMID:33477938
Case Report: Application of hepatitis B virus (HBV) deep sequencing to distinguish between acute and chronic infection. PMID:33458253
A deep learning framework combined with word embedding to identify DNA replication origins. PMID:33436981
Extensive Phylogenetic Analysis of Piscine Orthoreovirus Genomic Sequences Shows the Robustness of Subgenotype Classification. PMID:33430212
ClonoMatch: a tool for identifying homologous immunoglobulin and T cell receptor sequences in large databases. PMID:33325481
Bartonella gabonensis sp. nov., a new bartonella species from savannah rodent Lophuromys sp. in Franceville, Gabon. PMID:33294192
Lower Density and Shorter Duration of Nasopharyngeal Carriage by Pneumococcal Serotype 1 (ST217) May Explain Its Increased Invasiveness over Other Serotypes. PMID:33293378
Purification and Characterization of Two Novel Laccases from Peniophora lycii. PMID:33291231
Successive epidemic waves of cholera in South Sudan between 2014 and 2017: a descriptive epidemiological study. PMID:33278375
Genome-Wide Analysis of Nubian Ibex Reveals Candidate Positively Selected Genes That Contribute to Its Adaptation to the Desert Environment. PMID:33266380
Cross-continental emergence of Nannizziopsis barbatae disease may threaten wild Australian lizards. PMID:33262365
Global Occurrence of Clinically Relevant Hepatitis B Virus Variants as Found by Analysis of Publicly Available Sequencing Data. PMID:33238650
Motley Crew: Overview of the Currently Available Phage Diversity. PMID:33193205
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
Coevolving Plasmids Drive Gene Flow and Genome Plasticity in Host-Associated Intracellular Bacteria. PMID:33157023
Genomes OnLine Database (GOLD) v.8: overview and updates. PMID:33152092
Molecular and Vegetative Compatibility Groups Characterization of Aspergillus flavus Isolates from Kenya. PMID:33134742
Linking dimensions of data on global marine animal diversity. PMID:33131434
CenH3 distribution reveals extended centromeres in the model beetle Tribolium castaneum. PMID:33125365
Resurrecting the genus Geomorium: Systematic study of fungi in the genera Underwoodia and Gymnohydnotrya (Pezizales) with the description of three new South American species. PMID:33116337
Proteomic fingerprinting of Neotropical hard tick species (Acari: Ixodidae) using a self-curated mass spectra reference library. PMID:33108372
Existence of Bov-B LINE Retrotransposons in Snake Lineages Reveals Recent Multiple Horizontal Gene Transfers with Copy Number Variation. PMID:33105659
Mycobacterium Phage Butters-Encoded Proteins Contribute to Host Defense against Viral Attack. PMID:33024050
First confirmed occurrence of the yellow fever virus and dengue virus vector Aedes (Stegomyia) luteocephalus (Newstead, 1907) in Mozambique. PMID:33019944
Alpine Snow Algae Microbiome Diversity in the Coast Range of British Columbia. PMID:33013720
Nuclear and mitochondrial genome sequencing of North-African Leishmania infantum isolates from cured and relapsed visceral leishmaniasis patients reveals variations correlating with geography and phenotype. PMID:32975503
Ancient mitochondrial DNA pathogenic variants putatively associated with mitochondrial disease. PMID:32970680
Secondary structure of the SARS-CoV-2 5'-UTR. PMID:32965173
Complex Evolution of Light-Dependent Protochlorophyllide Oxidoreductases in Aerobic Anoxygenic Phototrophs: Origin, Phylogeny, and Function. PMID:32931580
Bone biomarkers in koalas: validation of assays and preliminary analyses. PMID:32917121
Biology and Prevalence in Northern Italy of Verrallia aucta (Diptera, Pipunculidae), a Parasitoid of Philaenus spumarius (Hemiptera, Aphrophoridae), the Main Vector of Xylella fastidiosa in Europe. PMID:32906844
TBDB: a database of structurally annotated T-box riboswitch:tRNA pairs. PMID:32882008
Differential Gene Expression Between Polymorphic Zooids of the Marine Bryozoan Bugulina stolonifera. PMID:32859685
FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae. PMID:32824044
Genomic Diversity of SARS-CoV-2 During Early Introduction into the United States National Capital Region. PMID:32817965
Genetic Diversity of the Cichlid Andinoacara latifrons (Steindachner, 1878) as a Conservation Strategy in Different Colombian Basins. PMID:32793289
Metabarcoding of native and invasive species in stomach contents of Great Lakes fishes. PMID:32780731
A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays. PMID:32777813
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. PMID:32753501
A novel droplet digital PCR human mtDNA assay for fecal source tracking. PMID:32750535
Design of a AFLP-PCR and PCR-RFLP test that identify the majority of discrete typing units of Trypanosoma cruzi. PMID:32750094
Understanding COVID-19 via comparative analysis of dark proteomes of SARS-CoV-2, human SARS and bat SARS-like coronaviruses. PMID:32712910
Description of Sarcocystis scandentiborneensis sp. nov. from treeshrews (Tupaia minor, T. tana) in northern Borneo with annotations on the utility of COI and 18S rDNA sequences for species delineation. PMID:32695576
High Frequency of Shared Clonotypes in Human T Cell Receptor Repertoires. PMID:32668251
Novel Erwinia persicina Infecting Phage Midgardsormr38 Within the Context of Temperate Erwinia Phages. PMID:32636815
Descent of Bacteria and Eukarya From an Archaeal Root of Life. PMID:32636606
Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae. PMID:32636259
Sequence Compression Benchmark (SCB) database-A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences. PMID:32627830
Soil Acidobacteria Strain AB23 Resistance to Oxidative Stress Through Production of Carotenoids. PMID:32617619
Drivers of community turnover differ between avian hemoparasite genera along a North American latitudinal gradient. PMID:32607162
MetaRibo-Seq measures translation in microbiomes. PMID:32601270
Targeting the SARS-CoV-2 spike glycoprotein prefusion conformation: virtual screening and molecular dynamics simulations applied to the identification of potential fusion inhibitors. PMID:32565126
Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean. PMID:32546674
Achieving a high cure rate with direct-acting antivirals for chronic Hepatitis C virus infection in Cameroon: a multi-clinic demonstration project. PMID:32502290
The mitochondrial genome of Acrobeloides varius (Cephalobomorpha) confirms non-monophyly of Tylenchina (Nematoda). PMID:32440374
Gene expression of functionally-related genes coevolves across fungal species: detecting coevolution of gene expression using phylogenetic comparative methods. PMID:32434474
Lake characteristics influence how methanogens in littoral sediments respond to terrestrial litter inputs. PMID:32424248
Discovery of thermophilic Bacillales using reduced-representation genotyping for identification. PMID:32404118
DNA Metabarcoding as a Tool for Disentangling Food Webs in Agroecosystems. PMID:32403224
PCR-RFLP Detection and Genogroup Identification of Piscirickettsia salmonis in Field Samples. PMID:32397152
A soil bacterial catabolic pathway on the move: Transfer of nicotine catabolic genes between Arthrobacter genus megaplasmids and invasion by mobile elements. PMID:32345784
A diagnostic real-time PCR assay for the rapid identification of the tomato-potato psyllid, Bactericera cockerelli (Šulc, 1909) and development of a psyllid barcoding database. PMID:32214353
Monitoring nearshore ecosystem health using Pacific razor clams (Siliqua patula) as an indicator species. PMID:32185117
A Real-Time PCR Method for the Authentication of Common Cuttlefish (Sepia officinalis) in Food Products. PMID:32143375
Composition, diversity, and activity of aerobic ammonia-oxidizing Bacteria and Archaea in the intertidal sands of a grand strand South Carolina beach. PMID:32126588
Ecological Differentiation in Two Major Freshwater Bacterial Taxa Along Environmental Gradients. PMID:32117171
Genotyping and Copy Number Analysis of Immunoglobin Heavy Chain Variable Genes Using Long Reads. PMID:32109676
A One Health systematic review of diagnostic tools for Echinococcus multilocularis surveillance: Towards equity in global detection. PMID:32095619
Phestilla subodiosus sp. nov. (Nudibranchia, Trinchesiidae), a corallivorous pest species in the aquarium trade. PMID:32089632
Seed mass, hardness, and phylogeny explain the potential for endozoochory by granivorous waterbirds. PMID:32076524
Combining genomics and epidemiology to track mumps virus transmission in the United States. PMID:32045407
Evidence for Co-evolutionary History of Early Diverging Lycopodiaceae Plants With Fungi. PMID:32010072
Evolution of sexual size dimorphism in the wing musculature of Drosophila. PMID:31988804
Parasitoid Complex of Fall Armyworm, Spodoptera frugiperda, in Ghana and Benin. PMID:31973018
Cell-free mitochondrial DNA increases in maternal circulation during healthy pregnancy: a prospective, longitudinal study. PMID:31913687
Discovery of genomic variations by whole-genome resequencing of the North American Araucana chicken. PMID:31821332
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity. PMID:31809257
Origin and Evolution of Two Independently Duplicated Genes Encoding UDP- Glucose: Glycoprotein Glucosyltransferases in Caenorhabditis and Vertebrates. PMID:31796523
Size increase without genetic divergence in the Eurasian water shrew Neomys fodiens. PMID:31758027
NEDD4 family ubiquitin ligases associate with LCMV Z's PPXY domain and are required for virus budding, but not via direct ubiquitination of Z. PMID:31710650
Fungal Adaptation to the Advanced Stages of Wood Decomposition: Insights from the Steccherinum ochraceum. PMID:31694151
Data for positive selection test and co-evolutionary analysis on mammalian cereblon. PMID:31667262
Hinge Region in DNA Packaging Terminase pUL15 of Herpes Simplex Virus: A Potential Allosteric Target for Antiviral Drugs. PMID:31614784
Epistasis and entrenchment of drug resistance in HIV-1 subtype B. PMID:31591964
Demographic and environmental drivers of metagenomic viral diversity in vampire bats. PMID:31561274
A carbohydrate-binding family 48 module enables feruloyl esterase action on polymeric arabinoxylan. PMID:31558605
Using Noninvasive Genetic Sampling to Survey Rare Butterfly Populations. PMID:31547512
Population Genomic Approaches for Weed Science. PMID:31546893
First Complete Coding Sequence of a Venezuelan Equine Encephalitis Virus Strain Isolated from an Equine Encephalitis Case in Costa Rica. PMID:31488528
Proteomic enzyme analysis of the marine fungus Paradendryphiella salina reveals alginate lyase as a minimal adaptation strategy for brown algae degradation. PMID:31451726
Viral taxonomy derived from evolutionary genome relationships. PMID:31412051
Living on the edge: Assessing the diversity of South African Pocillopora on the margins of the Southwestern Indian Ocean. PMID:31374077
Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition. PMID:31341205
Evolution and ecology of plant viruses. PMID:31312033
glypy: An Open Source Glycoinformatics Library. PMID:31310539
Molecular Genotyping of Hepatitis A Virus, California, USA, 2017-2018. PMID:31310213
Strongyloides spp. in cats: a review of the literature and the first report of zoonotic Strongyloides stercoralis in colonic epithelial nodular hyperplasia in cats. PMID:31300009
Butterfly abundance declines over 20 years of systematic monitoring in Ohio, USA. PMID:31287815
A SWI/SNF subunit regulates chromosomal dissociation of structural maintenance complex 5 during DNA repair in plant cells. PMID:31285327
Factors affecting the dominance hierarchy dynamics in a hummingbird assemblage. PMID:31263484
Placement of Triblidiaceae in Rhytismatales and comments on unique ascospore morphologies in Leotiomycetes (Fungi, Ascomycota). PMID:31258376
Vitellogenin Receptor as a Target for Tick Control: A Mini-Review. PMID:31178755
Shortcomings of Phylogenetic Studies on Recent Radiated Insular Groups: A Meta-Analysis Using Cabo Verde Biodiversity. PMID:31174340
Adventitious Virus Detection in Cells by High-Throughput Sequencing of Newly Synthesized RNAs: Unambiguous Differentiation of Cell Infection from Carryover of Viral Nucleic Acids. PMID:31167947
Molecular probes for the identification of avian Haemoproteus and Leucocytozoon parasites in tissue sections by chromogenic in situ hybridization. PMID:31159851
Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence Analysis. PMID:31143879
Transcriptome analysis of the model grass Lolium temulentum exposed to green leaf volatiles. PMID:31138172
Evolution of ASPM coding variation in apes and associations with brain structure in chimpanzees. PMID:31119860
The mobilome of Drosophila incompta, a flower-breeding species: comparison of transposable element landscapes among generalist and specialist flies. PMID:31119502
Pinus Susceptibility to Pitch Canker Triggers Specific Physiological Responses in Symptomatic Plants: An Integrated Approach. PMID:31068959
Solving the taxonomic identity of Pseudotomentellatristis s.l. (Thelephorales, Basidiomycota) - a multi-gene phylogeny and taxonomic review, integrating ecological and geographical data. PMID:31043855
Linkage-based genome assembly improvement of oil palm (Elaeis guineensis). PMID:31036825
Integrated Omic Analyses Provide Evidence that a "Candidatus Accumulibacter phosphatis" Strain Performs Denitrification under Microaerobic Conditions. PMID:30944872
Viral complementation of immunodeficiency confers protection against enteric pathogens via interferon-λ. PMID:30936486
Telenomus Remus, a Candidate Parasitoid for the Biological Control of Spodoptera Frugiperda in Africa, is already Present on the Continent. PMID:30934941
Morphological and Molecular Analysis of Australian Earwigs (Dermaptera) Points to Unique Species and Regional Endemism in the Anisolabididae Family. PMID:30875825
Validated Reference Panel from Renewable Source of Genomic DNA Available for Standardization of Blood Group Genotyping. PMID:30872185
A congruent topology for deep gastropod relationships. PMID:30862305
Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon. PMID:30845267
Paeniclostridium sordellii and Clostridioides difficile encode similar and clinically relevant tetracycline resistance loci in diverse genomic locations. PMID:30832583
Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton. PMID:30804913
Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics. PMID:30783571
A mechanism for temporary bioadhesion. PMID:30782790
Cryptic diets of forage fish: jellyfish consumption observed in the Celtic Sea and western English Channel. PMID:30746684
Capturing sequence diversity in metagenomes with comprehensive and scalable probe design. PMID:30718881
Noncontiguous finished genome sequence and description of Raoultibacter massiliensis gen. nov., sp. nov. and Raoultibacter timonensis sp. nov, two new bacterial species isolated from the human gut. PMID:30701700
Tail Wags the Dog? Functional Gene Classes Driving Genome-Wide GC Content in Plasmodium spp. PMID:30689842
Burkholderia cenocepacia utilizes a type VI secretion system for bacterial competition. PMID:30628184
Gliophorusglutinosus sp. nov. (Hygrophoraceae, Agaricales) from Eastern Himalayan region of India. PMID:30613182
Differential ratio amplicons (Ramp ) for the evaluation of RNA integrity extracted from complex environmental samples. PMID:30585386
Transcriptomic Characterization of the South American Freshwater Stingray Potamotrygon motoro Venom Apparatus. PMID:30567320
GLUE: a flexible software system for virus sequence data. PMID:30563445
Lignin-Degrading Abilities of Novel Autochthonous Fungal Isolates Trametes hirsuta F13 and Stereum gausapatum F28. PMID:30510479
WebNetCoffee: a web-based application to identify functionally conserved proteins from Multiple PPI networks. PMID:30419809
New Haplotypes of the Mitochondrial Gene CytB in the Nesting Population of the Siberian Black Kite Milvus migrans lineatus Gray, 1831 in the Territory of the Republic of Tyva. PMID:30397883
BacCapSeq: a Platform for Diagnosis and Characterization of Bacterial Infections. PMID:30352937
Comparative Genomics of Lactobacillus brevis Reveals a Significant Plasmidome Overlap of Brewery and Insect Isolates. PMID:30341451
Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection. PMID:30262776
Genes significantly associated with lineage II food isolates of Listeria monocytogenes. PMID:30253738
Barcoding blood meals: New vertebrate-specific primer sets for assigning taxonomic identities to host DNA from mosquito blood meals. PMID:30161128
Influenza A Virus M2 Protein Apical Targeting Is Required for Efficient Virus Replication. PMID:30158290
FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes. PMID:30152809
Amanitatullossiana, a new species, and two new records of AmanitasectionLepidella from north-western Himalaya, India. PMID:30150881
An ultraweak interaction in the intrinsically disordered replication machinery is essential for measles virus function. PMID:30140745
Low-copy nuclear markers in Isoëtes (Isoëtaceae) identified with transcriptomes. PMID:30131884
Convergent Evolution among Ruminant-Pathogenic Mycoplasma Involved Extensive Gene Content Changes. PMID:30102350
Environmental Drivers of Ranavirus in Free-Living Amphibians in Constructed Ponds. PMID:30094775
Deep learning to predict the lab-of-origin of engineered DNA. PMID:30087331
Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals. PMID:30018307
Predicting the Effectiveness of Hepatitis C Virus Neutralizing Antibodies by Bioinformatic Analysis of Conserved Epitope Residues Using Public Sequence Data. PMID:30013555
Temporal dynamics of the lung and plasma viromes in lung transplant recipients. PMID:29979780
Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing. PMID:29951114
Wnt/β-catenin signalling is necessary for gut differentiation in a marine annelid, Platynereis dumerilii. PMID:29942461
Geographical and Historical Patterns in the Emergences of Novel Highly Pathogenic Avian Influenza (HPAI) H5 and H7 Viruses in Poultry. PMID:29922681
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker. PMID:29912385
Development of Species-Specific SCAR Markers, Based on a SCoT Analysis, to Authenticate Physalis (Solanaceae) Species. PMID:29910824
The genomic features of parasitism, Polyembryony and immune evasion in the endoparasitic wasp Macrocentrus cingulum. PMID:29848290
Characterization of a novel Gram-stain-positive anaerobic coccus isolated from the female genital tract: Genome sequence and description of Murdochiella vaginalis sp. nov. PMID:29745065
A correlation between capsid protein VP2 and the plaque morphology of African horse sickness virus in cell culture. PMID:29730763
Complete Genome Sequence of Spiroplasma monobiae MQ-1T (ATCC 33825), a Bacterium Isolated from the Vespid Wasp (Monobia quadridens). PMID:29724836
An update on PUG-REST: RESTful interface for programmatic access to PubChem. PMID:29718389
Complete Genome Sequence of Spiroplasma floricola 23-6T (ATCC 29989), a Bacterium Isolated from a Tulip Tree (Liriodendron tulipifera L.). PMID:29674553
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes. PMID:29666365
The virome of Drosophila suzukii, an invasive pest of soft fruit. PMID:29644097
Variation in the microbiome of the urogenital tract of Chlamydia-free female koalas (Phascolarctos cinereus) with and without 'wet bottom'. PMID:29579080
A High-Throughput Approach for Identification of Nontuberculous Mycobacteria in Drinking Water Reveals Relationship between Water Age and Mycobacterium avium. PMID:29440575
Knockdown of Arf6 increases drug sensitivity and inhibits proliferation, migration and invasion in gastric cancer SGC-7901 cells. PMID:29434918
When are pathogen genome sequences informative of transmission events? PMID:29420641
Method for the Identification of Taxon-Specific k-mers from Chloroplast Genome: A Case Study on Tomato Plant (Solanum lycopersicum). PMID:29387080
SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data. PMID:29373955
Construction of Pará rubber tree genome and multi-transcriptome database accelerates rubber researches. PMID:29363422
The crystal structure of D-xylonate dehydratase reveals functional features of enzymes from the Ilv/ED dehydratase family. PMID:29339766
Clostridium sordellii Pathogenicity Locus Plasmid pCS1-1 Encodes a Novel Clostridial Conjugation Locus. PMID:29339424
To increase trust, change the social design behind aggregated biodiversity data. PMID:29315357
dBBQs: dataBase of Bacterial Quality scores. PMID:29297289
Jellyfish on the menu: mtDNA assay reveals scyphozoan predation in the Irish Sea. PMID:29291125
A DNA Barcode-Based RPA Assay (BAR-RPA) for Rapid Identification of the Dry Root of Ficus hirta (Wuzhimaotao). PMID:29258287
DLREFD: a database providing associations of long non-coding RNAs, environmental factors and phenotypes. PMID:29220470
NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations. PMID:29220444
Conserved RNA structures in the intergenic regions of ambisense viruses. PMID:29192224
Examination of Sarcocystis spp. of giant snakes from Australia and Southeast Asia confirms presence of a known pathogen - Sarcocystis nesbitti. PMID:29131856
VarCards: an integrated genetic and clinical database for coding variants in the human genome. PMID:29112736
The crystal structure of the Yersinia pestis iron chaperone YiuA reveals a basic triad binding motif for the chelated metal. PMID:29095164
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. PMID:29092050
The M2 protein of live, attenuated influenza vaccine encodes a mutation that reduces replication in human nasal epithelial cells. PMID:29079099
Interpreting T-Cell Cross-reactivity through Structure: Implications for TCR-Based Cancer Immunotherapy. PMID:29046675
Epigenome alterations in aortic valve stenosis and its related left ventricular hypertrophy. PMID:29026447
Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data. PMID:29020980
Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes. PMID:28992302
Identification of sapovirus GV.2, astrovirus VA3 and novel anelloviruses in serum from patients with acute hepatitis of unknown aetiology. PMID:28982120
PATRIC as a unique resource for studying antimicrobial resistance. PMID:28968762
Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach. PMID:28934286
Complete Genome Sequence of Spiroplasma corruscae EC-1T (DSM 19793), a Bacterium Isolated from a Lampyrid Beetle (Ellychnia corrusca). PMID:28912320
Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium "Candidatus Nitrospira nitrosa". PMID:28905001
Detection and characterization of an H4N6 avian-lineage influenza A virus in pigs in the Midwestern United States. PMID:28841443
Infiltration of M1, but not M2, macrophages is impaired after unilateral ureter obstruction in Nrf2-deficient mice. PMID:28821730
Disentangling the Frames, the State of Research on the Alphavirus 6K and TF Proteins. PMID:28820485
In silico prediction and characterization of secondary metabolite biosynthetic gene clusters in the wheat pathogen Zymoseptoria tritici. PMID:28818040
Proteogenomic Analysis and Discovery of Immune Antigens in Mycobacterium vaccae. PMID:28733429
Emerging Roles for SIRT5 in Metabolism and Cancer. PMID:28707979
ACE: an efficient and sensitive tool to detect insecticide resistance-associated mutations in insect acetylcholinesterase from RNA-Seq data. PMID:28693417
Prevalence and clinical significance of mediator complex subunit 12 mutations in 362 Han Chinese samples with uterine leiomyoma. PMID:28693134
Evolution and multiple roles of the Pancrustacea specific transcription factor zelda in insects. PMID:28671979
Organization and evolution of four differentially amplified tandem repeats in the Cucumis hystrix genome. PMID:28668977
An L-threonine transaldolase is required for L-threo-β-hydroxy-α-amino acid assembly during obafluorin biosynthesis. PMID:28649989
Molecular methods to detect Spodoptera frugiperda in Ghana, and implications for monitoring the spread of invasive species in developing countries. PMID:28642581
Prediction and analysis of three gene families related to leaf rust (Puccinia triticina) resistance in wheat (Triticum aestivum L.). PMID:28633642
Improved maize reference genome with single-molecule technologies. PMID:28605751
Zika virus evolution and spread in the Americas. PMID:28538734
The origin and evolution of human glutaminases and their atypical C-terminal ankyrin repeats. PMID:28526749
Colonization patterns of Enterococcus cecorum in two different broiler production cycles detected with a newly developed quantitative real-time PCR. PMID:28476097
TraitRateProp: a web server for the detection of trait-dependent evolutionary rate shifts in sequence sites. PMID:28453644
Multi-class computational evolution: development, benchmark evaluation and application to RNA-Seq biomarker discovery. PMID:28450890
N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana. PMID:28432195
Antagonistic Coevolution of MER Tyrosine Kinase Expression and Function. PMID:28369510
Plant specimen contextual data consensus. PMID:28369359
Propionibacterium acnes biofilm is present in intervertebral discs of patients undergoing microdiscectomy. PMID:28369127
Better living through ontologies at the Immune Epitope Database. PMID:28365732
Discriminating the reaction types of plant type III polyketide synthases. PMID:28334262
Complete Genome Sequence of Spiroplasma sp. NBRC 100390. PMID:28280009
Translesion DNA polymerases in eukaryotes: what makes them tick? PMID:28279077
Molecular Population Genetics. PMID:28270526
Genome Sequence of Rhodoferax antarcticus ANT.BRT; A Psychrophilic Purple Nonsulfur Bacterium from an Antarctic Microbial Mat. PMID:28230808
Plastome phylogeny and early diversification of Brassicaceae. PMID:28209119
Complete Genome Sequence of Spiroplasma sp. TU-14. PMID:28082500
Taxonogenomics and description of Vaginella massiliensis gen. nov., sp. nov., strain Marseille P2517T, a new bacterial genus isolated from the human vagina. PMID:28053707
World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide. PMID:28053166
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Domain Organization and Evolution of the Highly Divergent 5' Coding Region of Genomes of Arteriviruses, Including the Novel Possum Nidovirus. PMID:28053107
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters. PMID:27924032
DNA Data Bank of Japan. PMID:27924010
KEGG: new perspectives on genomes, pathways, diseases and drugs. PMID:27899662
jPOSTrepo: an international standard data repository for proteomes. PMID:27899654
The UCSC Genome Browser database: 2017 update. PMID:27899642
European Nucleotide Archive in 2016. PMID:27899630
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. PMID:27899627
GenBank. PMID:27899564
Database Resources of the National Center for Biotechnology Information. PMID:27899561
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. PMID:27799466
Targeting Reactive Carbonyls for Identifying Natural Products and Their Biosynthetic Origins. PMID:27797509
Complete Genome Sequence of Spiroplasma helicoides TABS-2T (DSM 22551), a Bacterium Isolated from a Horsefly (Tabanus abactor). PMID:27795290
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. PMID:27794040
MALDI-TOF Mass Spectrometry Enables a Comprehensive and Fast Analysis of Dynamics and Qualities of Stress Responses of Lactobacillus paracasei subsp. paracasei F19. PMID:27783652
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa. PMID:27616324
Application of the Ribosomal DNA ITS2 Region of Physalis (Solanaceae): DNA Barcoding and Phylogenetic Study. PMID:27486467
Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges. PMID:27375355
Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs. PMID:27329603
SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals. PMID:27257541
Environmental Mapping of Paracoccidioides spp. in Brazil Reveals New Clues into Genetic Diversity, Biogeography and Wild Host Association. PMID:27045486
Zika virus in the Americas: Early epidemiological and genetic findings. PMID:27013429 -
GenBank
PubMed citations: 382.
382 articles citing: GenBank
Microbial Succession and Interactions During the Manufacture of Fu Brick Tea. PMID:35814693
An integrative re-evaluation of Typhlatya shrimp within the karst aquifer of the Yucatán Peninsula, Mexico. PMID:35351932
RLEP LAMP for the laboratory confirmation of leprosy: towards a point-of-care test. PMID:34823479
Functional Annotation from Structural Homology. PMID:34718998
Vector-Borne Blood Parasites of the Great-Tailed Grackle (Quiscalus mexicanus) in East-Central Texas, USA. PMID:33673608
Data integration enables global biodiversity synthesis. PMID:33526679
Horizontal gene transfer and recombination analysis of SARS-CoV-2 genes helps discover its close relatives and shed light on its origin. PMID:33514319
Isolation, expression, and characterization of raw starch degrading α-amylase from a marine lake Bacillus megaterium NL3. PMID:33426327
Draft Genome Sequence of Pseudomonas sp. Strain T2.31D-1, Isolated from a Drilling Core Sample Obtained 414 Meters below Surface in the Iberian Pyrite Belt. PMID:33414307
The Mosaic Architecture of NRPS-PKS in the Arbuscular Mycorrhizal Fungus Gigaspora margarita Shows a Domain With Bacterial Signature. PMID:33329443
GenBank's reliability is uncertain for biodiversity researchers seeking species-level assignment for eDNA. PMID:33234565
A quick and sensitive diagnostic tool for detection of Maize streak virus. PMID:33184360
Analysis of 16S rRNA genes reveals reduced Fusobacterial community diversity when translocating from saliva to GI sites. PMID:33054632
Draft Genome Sequence of Shewanella sp. Strain T2.3D-1.1, Isolated from 121.8 Meters Deep in the Subsurface of the Iberian Pyrite Belt. PMID:33004443
Artificial Neural Networks Model for Predicting Type 2 Diabetes Mellitus Based on VDR Gene FokI Polymorphism, Lipid Profile and Demographic Data. PMID:32823649
A diagnostic genomic signal processing (GSP)-based system for automatic feature analysis and detection of COVID-19. PMID:32793981
A First NGS Investigation Suggests No Association Between Viruses and Canine Cancers. PMID:32766289
In silico and empirical evaluation of twelve metabarcoding primer sets for insectivorous diet analyses. PMID:32724515
Egg parasitoids of Arboridia apicalis (Nawa, 1913) (Hemiptera, Cicadellidae), a leafhopper pest of grapevines in Japan, with description of a new species of Anagrus Haliday, 1833 (Hymenoptera, Mymaridae). PMID:32714008
Identification of Known and Novel MicroRNAs in Raspberry Organs Through High-Throughput Sequencing. PMID:32582255
Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone. PMID:32452072
ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces. PMID:32293241
Macrostylis metallicola spec. nov.-an isopod with geographically clustered genetic variability from a polymetallic-nodule area in the Clarion-Clipperton Fracture Zone. PMID:32149025
Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media. PMID:31871833
Molecular Biomarkers and Influential Factors of Denitrification in a Full-Scale Biological Nitrogen Removal Plant. PMID:31861619
Bacillus pumilus B12 Degrades Polylactic Acid and Degradation Is Affected by Changing Nutrient Conditions. PMID:31824441
A reference library for Canadian invertebrates with 1.5 million barcodes, voucher specimens, and DNA samples. PMID:31811161
Survival of Spray-Dried Rhodotorula mucilaginosa Isolated from Natural Microbiota of Murta Berries and Antagonistic Effect on Botrytis cinerea. PMID:31537971
Development of a combined RLEP/16S rRNA (RT) qPCR assay for the detection of viable M. leprae from nasal swab samples. PMID:31462296
A proposed update for the classification and description of bacterial lipolytic enzymes. PMID:31328034
A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium. PMID:31289177
Molecular-genetic diversity of the endangered Dalmatian barbelgudgeon, Aulopyge huegelii from the Buško Blato reservoir. PMID:31154556
Egg parasitoids of the tea green leafhopper Empoascaonukii (Hemiptera, Cicadellidae) in Japan, with description of a new species of Anagrus (Hymenoptera, Mymaridae). PMID:31048960
Draft Genome Sequence of Rhodoplanes sp. Strain T2.26MG-98, Isolated from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt. PMID:31000538
MSC: a metagenomic sequence classification algorithm. PMID:30649204
Bottlenecks for genome-edited crops on the road from lab to farm. PMID:30367679
Osteogenic potential of cell spheroids composed of varying ratios of gingiva-derived and bone marrow stem cells using concave microwells. PMID:30186469
Unlocking pandemic potential: prevalence and spatial patterns of key substitutions in avian influenza H5N1 in Egyptian isolates. PMID:29980172
SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments. PMID:29643843
Molecular, Morphological, and Biological Differentiation between Anagrus virlai sp. n., an Egg Parasitoid of the Corn Leafhopper Dalbulus maidis (Hemiptera: Cicadellidae) in the New World, and Anagrus incarnatus from the Palaearctic Region (Hymenoptera: Mymaridae). PMID:29637522
Re-Arrangements in the Cytoplasmic Distribution of Small RNAs Following the Maternal-to-Zygotic Transition in Drosophila Embryos. PMID:29439397
The bacterial community associated with the sheep gastrointestinal nematode parasite Haemonchus contortus. PMID:29420571
O-5S quantitative real-time PCR: a new diagnostic tool for laboratory confirmation of human onchocerciasis. PMID:28969662
Mycorrhizal Associations and Trophic Modes in Coexisting Orchids: An Ecological Continuum between Auto- and Mixotrophy. PMID:28912791
Extracellular Alkaline Lipase from a Novel Fungus Curvularia sp. DHE 5: Optimisation of Physicochemical Parameters, Partial Purification and Characterisation. PMID:28867950
Minimal tool set for a prokaryotic circadian clock. PMID:28732467
Canis mtDNA HV1 database: a web-based tool for collecting and surveying Canis mtDNA HV1 haplotype in public database. PMID:28651548
Expression of four phosphate transporter genes from Finger millet (Eleusine coracana L.) in response to mycorrhizal colonization and Pi stress. PMID:28391483
An ontology-based search engine for digital reconstructions of neuronal morphology. PMID:28337675
FARME DB: a functional antibiotic resistance element database. PMID:28077567
Genome Sequence of Pseudomonas citronellolis SJTE-3, an Estrogen- and Polycyclic Aromatic Hydrocarbon-Degrading Bacterium. PMID:27932659
Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium. PMID:27920771
Habitat-driven variation in mycorrhizal communities in the terrestrial orchid genus Dactylorhiza. PMID:27883008
Computational workflow for the fine-grained analysis of metagenomic samples. PMID:27801291
Mycorrhizal Fungal Diversity and Community Composition in Two Closely Related Platanthera (Orchidaceae) Species. PMID:27695108
Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies. PMID:27683576
Mitochondrial DNA Variation Among Populations of Rhynchophorus ferrugineus (Coleoptera: Curculionidae) From Pakistan. PMID:27651423
Association between Propionibacterium acnes and frozen shoulder: a pilot study. PMID:27582943
Dysbiosis of the Fecal Microbiota in Cattle Infected with Mycobacterium avium subsp. paratuberculosis. PMID:27494144
Metagenomic Reconstruction of Key Anaerobic Digestion Pathways in Municipal Sludge and Industrial Wastewater Biogas-Producing Systems. PMID:27252693
UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB. PMID:27153729
Differences in mycorrhizal communities between Epipactis palustris, E. helleborine and its presumed sister species E. neerlandica. PMID:26946528
Network Analysis of Sequence-Function Relationships and Exploration of Sequence Space of TEM β-Lactamases. PMID:26883706
The yjdF riboswitch candidate regulates gene expression by binding diverse azaaromatic compounds. PMID:26843526
Structure and membrane remodeling activity of ESCRT-III helical polymers. PMID:26634441
Loop-Mediated Isothermal Amplification for Laboratory Confirmation of Buruli Ulcer Disease-Towards a Point-of-Care Test. PMID:26566026
Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin. PMID:26539826
Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp. PMID:26432387
Complete Genome Sequence of Mycobacterium bovis Clinical Strain 1595, Isolated from the Laryngopharyngeal Lymph Node of South Korean Cattle. PMID:26430042
New classes of self-cleaving ribozymes revealed by comparative genomics analysis. PMID:26167874
Recent advances in elementary flux modes and yield space analysis as useful tools in metabolic network studies. PMID:26066363
Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants. PMID:26046541
Comparative genome analysis of rice-pathogenic Burkholderia provides insight into capacity to adapt to different environments and hosts. PMID:25943361
Control of bacterial exoelectrogenesis by c-AMP-GMP. PMID:25848023
The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias. PMID:25730765
Phylogeography of the walnut twig beetle, Pityophthorus juglandis, the vector of thousand cankers disease in North American walnut trees. PMID:25695760
A reverse taxonomic approach to assess macrofaunal distribution patterns in abyssal Pacific polymetallic nodule fields. PMID:25671322
CenH3 evolution in diploids and polyploids of three angiosperm genera. PMID:25547313
PCR primers to study the diversity of expressed fungal genes encoding lignocellulolytic enzymes in soils using high-throughput sequencing. PMID:25545363
Using EMBL-EBI Services via Web Interface and Programmatically via Web Services. PMID:25501941
An unusual tale of rat-bite fever endocarditis. PMID:25414213
Text mining in cancer gene and pathway prioritization. PMID:25392685
Discovery and characterization of a novel extremely acidic bacterial N-glycanase with combined advantages of PNGase F and A. PMID:25294009
Genetic Diversity and Differentiation of Colletotrichum spp. Isolates Associated with Leguminosae Using Multigene Loci, RAPD and ISSR. PMID:25288981
The fungal defensin family enlarged. PMID:25230677
Draft genome sequence of Dyadobacter tibetensis type strain (Y620-1) isolated from glacial ice. PMID:25197470
PONDEROSA-C/S: client-server based software package for automated protein 3D structure determination. PMID:25190042
The genus Lactarius s. str. (Basidiomycota, Russulales) in Togo (West Africa): phylogeny and a new species described. PMID:25083405
Genomic basis of symbiovar mimosae in Rhizobium etli. PMID:25005495
Some limitations of public sequence data for phylogenetic inference (in plants). PMID:24999823
Systems biology in the context of big data and networks. PMID:24982882
Beyond the chromosome: the prevalence of unique extra-chromosomal bacteriophages with integrated virulence genes in pathogenic Staphylococcus aureus. PMID:24963913
Elucidation of operon structures across closely related bacterial genomes. PMID:24959722
Complete Genome Sequence of the p-Nitrophenol-Degrading Bacterium Pseudomonas putida DLL-E4. PMID:24948765
GyrB polymorphisms accurately assign invasive viridans group streptococcal species. PMID:24899021
Prediction of bacterial microRNAs and possible targets in human cell transcriptome. PMID:24871974
Assessment of the potential relationship between egg quality and infectious bronchitis virus infection in Australian layer flocks. PMID:24673141
A novel regio‑specific cyclosporin hydroxylase gene revealed through the genome mining of Pseudonocardia autotrophica. PMID:24659179
Draft Genome Sequence of Pseudomonas nitroreducens Strain TX1, Which Degrades Nonionic Surfactants and Estrogen-Like Alkylphenols. PMID:24482523
Co-occurrence of anaerobic bacteria in colorectal carcinomas. PMID:24450771
Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea. PMID:24450745
A guide to bioinformatics for immunologists. PMID:24363654
Whole transcriptome characterization of the effects of dehydration and rehydration on Cladonia rangiferina, the grey reindeer lichen. PMID:24325588
Incongruence between multi-locus sequence analysis (MLSA) and whole-genome-based phylogenies: Pseudomonas syringae pathovar pisi as a cautionary tale. PMID:24224664
Ammonia-oxidizer communities in an agricultural soil treated with contrasting nitrogen sources. PMID:24223575
Narrow-host-range bacteriophages that infect Rhizobium etli associate with distinct genomic types. PMID:24185856
Riboswitches in eubacteria sense the second messenger c-di-AMP. PMID:24141192
Antigenic heterogeneity of capsid protein VP1 in foot-and-mouth disease virus (FMDV) serotype Asia 1. PMID:23983476
Application of motif-based tools on evolutionary analysis of multipartite single-stranded DNA viruses. PMID:23936517
New metrics for comparison of taxonomies reveal striking discrepancies among species delimitation methods in Madascincus lizards. PMID:23874561
Draft Genome Sequence of Haemophilus parasuis gx033, a Serotype 4 Strain Isolated from the Swine Lower Respiratory Tract. PMID:23704176
Streptomyces misionensis PESB-25 produces a thermoacidophilic endoglucanase using sugarcane bagasse and corn steep liquor as the sole organic substrates. PMID:23586048
Fungal symbioses in hornworts: a chequered history. PMID:23536598
Complete Genome Sequence of Mycobacterium bovis BCG Korea, the Korean Vaccine Strain for Substantial Production. PMID:23516200
Computational small RNA prediction in bacteria. PMID:23516022
In silico expressed sequence tag analysis in identification of probable diabetic genes as virtual therapeutic targets. PMID:23509765
Identification of thermophilic bacterial strains producing thermotolerant hydrolytic enzymes from manure compost. PMID:23448754
Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants. PMID:23377560
Identification of a cyclosporine-specific P450 hydroxylase gene through targeted cytochrome P450 complement (CYPome) disruption in Sebekia benihana. PMID:23354713
An approach to identifying drug resistance associated mutations in bacterial strains. PMID:23281931
Within-mat variability in anatoxin-a and homoanatoxin-a production among benthic Phormidium (cyanobacteria) strains. PMID:23162704
Whole-genome sequence of Cupriavidus sp. strain BIS7, a heavy-metal-resistant bacterium. PMID:23115161
Detection of dengue group viruses by fluorescence in situ hybridization. PMID:23110979
Characterization of a transcriptome from a non-model organism, Cladonia rangiferina, the grey reindeer lichen, using high-throughput next generation sequencing and EST sequence data. PMID:23110403
Complete genome sequence of Burkholderia sp. Strain GG4, a betaproteobacterium that reduces 3-oxo-N-acylhomoserine lactones and produces different N-acylhomoserine lactones. PMID:23105060
Bacterial and fungal chitinase chiJ orthologs evolve under different selective constraints following horizontal gene transfer. PMID:23095575
Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities. PMID:22957194
Detection of viable Mycobacterium ulcerans in clinical samples by a novel combined 16S rRNA reverse transcriptase/IS2404 real-time qPCR assay. PMID:22953006
Gene copy number variation and its significance in cyanobacterial phylogeny. PMID:22894826
Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil. PMID:22887679
Genome sequence of Pseudomonas putida strain SJTE-1, a bacterium capable of degrading estrogens and persistent organic pollutants. PMID:22887678
A yeast expression system for functional and pharmacological studies of the malaria parasite Ca²⁺/H⁺ antiporter. PMID:22853777
Life sciences domain analysis model. PMID:22744959
Short term evolution of a highly transmissible methicillin-resistant Staphylococcus aureus clone (ST228) in a tertiary care hospital. PMID:22720005
Novel strategy to evaluate infectious salmon anemia virus variants by high resolution melting. PMID:22719837
Complex carbohydrate utilization by the healthy human microbiome. PMID:22719820
A proposed taxonomy of anaerobic fungi (class neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis. PMID:22615827
Disruption of the Eng18B ENGase gene in the fungal biocontrol agent Trichoderma atroviride affects growth, conidiation and antagonistic ability. PMID:22586463
The presence of viral subpopulations in an infectious bronchitis virus vaccine with differing pathogenicity--a preliminary study. PMID:22542436
Unravelling soil fungal communities from different Mediterranean land-use backgrounds. PMID:22536336
Comparative analysis of gene content evolution in phytoplasmas and mycoplasmas. PMID:22479625
Molecular surveillance of true nontypeable Haemophilus influenzae: an evaluation of PCR screening assays. PMID:22470516
Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides. PMID:22396667
Rapid identification of non-human sequences in high-throughput sequencing datasets. PMID:22377895
Tetrodotoxin concentrations in Pleurobranchaea maculata: temporal, spatial and individual variability from New Zealand populations. PMID:22363228
RIPPLY3 is a retinoic acid-inducible repressor required for setting the borders of the pre-placodal ectoderm. PMID:22354841
Identification of genes potentially related to biomineralization and immunity by transcriptome analysis of pearl sac in pearl oyster Pinctada martensii. PMID:22351046
Safety assessment of Bifidobacterium longum JDM301 based on complete genome sequences. PMID:22346255
The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms. PMID:22300633
Legionella cardiaca sp. nov., isolated from a case of native valve endocarditis in a human heart. PMID:22286905
Complete genome sequence of the fenitrothion-degrading Burkholderia sp. strain YI23. PMID:22275096
POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data. PMID:22253616
Towards Structuring Unstructured GenBank Metadata for Enhancing Comparative Biological Studies. PMID:22211174
Complete genome sequence of the rice pathogen Pantoea ananatis strain PA13. PMID:22207741
Data analysis and data mining: current issues in biomedical informatics. PMID:22146916
Genomics and privacy: implications of the new reality of closed data for the field. PMID:22144881
DBETH: a Database of Bacterial Exotoxins for Human. PMID:22102573
The bacteriophage WORiC is the active phage element in wRi of Drosophila simulans and represents a conserved class of WO phages. PMID:22085419
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries. PMID:22070195
Expressed sequence-tag analysis of ovaries of Brachiaria brizantha reveals genes associated with the early steps of embryo sac differentiation of apomictic plants. PMID:22068439
Complete genome sequence of multidrug-resistant Acinetobacter baumannii strain 1656-2, which forms sturdy biofilm. PMID:22038960
Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2. PMID:22028463
The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements. PMID:22020280
The molecular basis of folate salvage in Plasmodium falciparum: characterization of two folate transporters. PMID:21998306
Satellite RNAs and Satellite Viruses of Plants. PMID:21994595
Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers. PMID:21992066
Promiscuity in mice is associated with increased vaginal bacterial diversity. PMID:21964973
Bioinformatics and systems biology of the lipidome. PMID:21939287
Discovery of the first insect nidovirus, a missing evolutionary link in the emergence of the largest RNA virus genomes. PMID:21931546
Using extreme phenotype sampling to identify the rare causal variants of quantitative traits in association studies. PMID:21922541
MaizeGDB becomes 'sequence-centric'. PMID:21847242
Defining the Pseudomonas genus: where do we draw the line with Azotobacter? PMID:21811795
Spinning gland transcriptomics from two main clades of spiders (order: Araneae)--insights on their molecular, anatomical and behavioral evolution. PMID:21738742
RASOnD-a comprehensive resource and search tool for RAS superfamily oncogenes from various species. PMID:21729256
Enhancing phylogeography by improving geographical information from GenBank. PMID:21723960
Diversity of bovine rumen methanogens In vitro in the presence of condensed tannins, as determined by sequence analysis of 16S rRNA gene library. PMID:21717338
Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia. PMID:21687739
Structure-based prediction reveals capping motifs that inhibit β-helix aggregation. PMID:21685332
Genome sequence of the 17β-estradiol-utilizing bacterium Sphingomonas strain KC8. PMID:21685282
Testis-specific glyceraldehyde-3-phosphate dehydrogenase: origin and evolution. PMID:21663662
Ligand-binding PAS domains in a genomic, cellular, and structural context. PMID:21663441
A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues. PMID:21639908
Curation of characterized glycoside hydrolases of fungal origin. PMID:21622642
Sharing and archiving nucleic acid structure mapping data. PMID:21610212
Characterization of MHC class I and II genes in a subantarctic seabird, the blue petrel, Halobaena caerulea (Procellariiformes). PMID:21607694
CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. PMID:21599929
Comparative genomics of cell envelope components in mycobacteria. PMID:21573108
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. PMID:21552244
Methods and strategies for gene structure curation in WormBase. PMID:21543339
Discovering the unknown: improving detection of novel species and genera from short reads. PMID:21541181
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells. PMID:21516085
Differential gene expression and associated QTL mapping for cotton yield based on a cDNA-AFLP transcriptome map in an immortalized F2. PMID:21512772
PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination. PMID:21511715
The Laccase Engineering Database: a classification and analysis system for laccases and related multicopper oxidases. PMID:21498547
Metagenomics and the protein universe. PMID:21497084
Complete genome sequence of Burkholderia gladioli BSR3. PMID:21478339
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. PMID:21472436
Substrate specificity of a peptidyl-aminoacyl-L/D-isomerase from frog skin. PMID:21424715
In silico evidence for the horizontal transfer of gsiB, a σ(B)-regulated gene in gram-positive bacteria, to lactic acid bacteria. PMID:21421783
Draft genome sequence of Caloramator australicus strain RC3T, a thermoanaerobe from the Great Artesian Basin of Australia. PMID:21421756
AGeS: a software system for microbial genome sequence annotation. PMID:21408217
Automated identification of medically important bacteria by 16S rRNA gene sequencing using a novel comprehensive database, 16SpathDB. PMID:21389154
Knowledge management for systems biology a general and visually driven framework applied to translational medicine. PMID:21375767
A proteomics approach to decipher the molecular nature of planarian stem cells. PMID:21356107
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. PMID:21330288
Genome sequence of Citromicrobium strain JLT1363, isolated from the South China Sea. PMID:21317332
Proteotyping to establish gene origin within reassortant influenza viruses. PMID:21305059
Analysis of the peroxiredoxin family: using active-site structure and sequence information for global classification and residue analysis. PMID:21287625
Unpublished but public microbial genomes with biotechnological relevance. PMID:21261839
The genomic constellation of a novel avian orthoreovirus strain associated with runting-stunting syndrome in broilers. PMID:21116842
Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis. PMID:21057783
Infectious bronchitis viruses with naturally occurring genomic rearrangement and gene deletion. PMID:21049275
A general model of codon bias due to GC mutational bias. PMID:21048949
ThYme: a database for thioester-active enzymes. PMID:21045059
GPCRDB: information system for G protein-coupled receptors. PMID:21045054
PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family. PMID:21036863
Caldicoprobacter algeriensis sp. nov. a new thermophilic anaerobic, xylanolytic bacterium isolated from an Algerian hot spring. PMID:20981546
Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon. PMID:20973991
Prediction and analysis of the modular structure of cytochrome P450 monooxygenases. PMID:20950472
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. PMID:20950446
SHV Lactamase Engineering Database: a reconciliation tool for SHV β-lactamases in public databases. PMID:20942904
Microbial diversity of supra- and subgingival biofilms on freshly colonized titanium implant abutments in the human mouth. PMID:20931254
Non-coding RNA detection methods combined to improve usability, reproducibility and precision. PMID:20920260
Structure and mechanism of ORF36, an amino sugar oxidizing enzyme in everninomicin biosynthesis. PMID:20866105
Genomic characterization of Campylobacter jejuni strain M1. PMID:20865039
Identification of CD8+ T cell epitopes in the West Nile virus polyprotein by reverse-immunology using NetCTL. PMID:20856867
Application of high-resolution melt curve analysis for classification of infectious bronchitis viruses in field specimens. PMID:20854299
What lies underneath: conserving the oceans' genetic resources. PMID:20837523
Identification and characterization of microRNAs and their target genes in tobacco (Nicotiana tabacum). PMID:20803216
ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. PMID:20801769
Bacterial diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis. PMID:20720314
The extinction dynamics of bacterial pseudogenes. PMID:20700439
Genomic analysis of codon, sequence and structural conservation with selective biochemical-structure mapping reveals highly conserved and dynamic structures in rotavirus RNAs with potential cis-acting functions. PMID:20671030
Screensaver: an open source lab information management system (LIMS) for high throughput screening facilities. PMID:20482787
Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage. PMID:20472728
Implementing genotype-guided antithrombotic therapy. PMID:20462345
A comparative taxonomy of parallel algorithms for RNA secondary structure prediction. PMID:20458364
Comparative molecular evolution of trichoderma chitinases in response to mycoparasitic interactions. PMID:20454524
Signal processing for metagenomics: extracting information from the soup. PMID:20436876
BioTorrents: a file sharing service for scientific data. PMID:20418944
Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003. PMID:20418398
Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome. PMID:20385588
The genetic location of the self-incompatibility locus in white clover (Trifolium repens L.). PMID:20383486
Computational characterization of how the VX nerve agent binds human serum paraoxonase 1. PMID:20379755
Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates. PMID:20370931
Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data. PMID:20369061
A virulent parent with probiotic progeny: comparative genomics of Escherichia coli strains CFT073, Nissle 1917 and ABU 83972. PMID:20354866
Different atmospheric methane-oxidizing communities in European beech and Norway spruce soils. PMID:20348309
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. PMID:20348253
Deletional bias across the three domains of life. PMID:20333185
Endothelial cell processing and alternatively spliced transcripts of factor VIII: potential implications for coagulation cascades and pulmonary hypertension. PMID:20174619
Template proteogenomics: sequencing whole proteins using an imperfect database. PMID:20164058
Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum. PMID:20163733
Neuropeptidomics of the mosquito Aedes aegypti. PMID:20163154
Using oral microbial DNA analysis to identify expirated bloodspatter. PMID:20162292
Differential direct coding: a compression algorithm for nucleotide sequence data. PMID:20157486
Practical application of bioinformatics by the multidisciplinary VIZIER consortium. PMID:20153379
A GREM1 gene variant associates with diabetic nephropathy. PMID:20150533
Modifications in host cell cytoskeleton structure and function mediated by intracellular HIV-1 Tat protein are greatly dependent on the second coding exon. PMID:20139419
DIGA--a database of improved gene annotation for phytopathogens. PMID:20089203
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. PMID:20051556
Filling the gap, evolutionarily conserved Omp85 in plastids of chromalveolates. PMID:20042599
Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions. PMID:20042074
Genomic inventory and transcriptional analysis of Medicago truncatula transporters. PMID:20023147
Coexistence of two different photosynthetic operons in Citromicrobium bathyomarinum JL354 as revealed by whole-genome sequencing. PMID:19966001
Roles of Pichia pastoris Uvrag in vacuolar protein sorting and the phosphatidylinositol 3-kinase complex in phagophore elongation in autophagy pathways. PMID:19946209
Protein-precursor tRNA contact leads to sequence-specific recognition of 5' leaders by bacterial ribonuclease P. PMID:19932118
Microbiomic comparison of the intestine of the earthworm Eisenia fetida fed ergovaline. PMID:19924482
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. PMID:19923232
Comparing models of evolution for ordered and disordered proteins. PMID:19923193
Novel integron gene cassette arrays identified in a global collection of multi-drug resistant non-typhoidal Salmonella enterica. PMID:19921331
The ITS2 Database III--sequences and structures for phylogeny. PMID:19920122
Variations of bacterial 16S rDNA phylotypes prior to and after chlorination for drinking water production from two surface water treatment plants. PMID:19908076
MINT, the molecular interaction database: 2009 update. PMID:19897547
The comprehensive microbial resource. PMID:19892825
Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. PMID:19892720
Intrinsic structural disorder confers cellular viability on oncogenic fusion proteins. PMID:19888473
Non-redundant patent sequence databases with value-added annotations at two levels. PMID:19884134
Pathema: a clade-specific bioinformatics resource center for pathogen research. PMID:19843611
PeptideDepot: flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information. PMID:19834895
Optimization and comparison of different methods for RNA isolation for cDNA library construction from the reindeer lichen Cladonia rangiferina. PMID:19804636
Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria. PMID:19788732
A protein-protein interaction guided method for competitive transcription factor binding improves target predictions. PMID:19786498
CanGeneBase (CGB)--a database on cancer related genes. PMID:19759863
Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. PMID:19698148
The Lactamase Engineering Database: a critical survey of TEM sequences in public databases. PMID:19698099
Nucleosome positioning as a determinant of exon recognition. PMID:19684599
SNAD: Sequence Name Annotation-based Designer. PMID:19682364
ArachnoServer: a database of protein toxins from spiders. PMID:19674480
Molecular evolution of adeno-associated virus for enhanced glial gene delivery. PMID:19672246
CSA: an efficient algorithm to improve circular DNA multiple alignment. PMID:19627599
Virus-host coevolution: common patterns of nucleotide motif usage in Flaviviridae and their hosts. PMID:19617912
Rapid sequence evolution of transcription factors controlling neuron differentiation in Caenorhabditis. PMID:19589887
Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. PMID:19550198
Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology. PMID:19523106
In silico studies on DARC. PMID:19519483
Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach. PMID:19504263
The consequences of genetic drift for bacterial genome complexity. PMID:19502381
Expression and subcellular localization of kinetoplast-associated proteins in the different developmental stages of Trypanosoma cruzi. PMID:19497120
Measure of synonymous codon usage diversity among genes in bacteria. PMID:19480720
Transmembrane protein topology prediction using support vector machines. PMID:19470175
Poxvirus protein evolution: family wide assessment of possible horizontal gene transfer events. PMID:19464330
How to get the most out of your curation effort. PMID:19461884
SEPT9 gene sequencing analysis reveals recurrent mutations in hereditary neuralgic amyotrophy. PMID:19451530
The diversity present in 5140 human mitochondrial genomes. PMID:19426953
Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network. PMID:19408032
Approaches to analyse dynamic microbial communities such as those seen in cystic fibrosis lung. PMID:19403459
ANNIE: integrated de novo protein sequence annotation. PMID:19389726
Profile analysis and prediction of tissue-specific CpG island methylation classes. PMID:19383127
Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution. PMID:19357307
Evaluation of Nod-like receptor (NLR) effector domain interactions. PMID:19337385
Complete genome sequence of Burkholderia glumae BGR1. PMID:19329631
Evolution based on domain combinations: the case of glutaredoxins. PMID:19321008
PCR identification of Culicoides dewulfi midges (Diptera: Ceratopogonidae), potential vectors of bluetongue in Germany. PMID:19308451
Rapid detection and non-subjective characterisation of infectious bronchitis virus isolates using high-resolution melt curve analysis and a mathematical model. PMID:19301093
The apolipoprotein L family of programmed cell death and immunity genes rapidly evolved in primates at discrete sites of host-pathogen interactions. PMID:19299565
Duplication count distributions in DNA sequences. PMID:19256873
Structure and function of Pseudomonas aeruginosa protein PA1324 (21-170). PMID:19241370
BIOFFORC: tool development for biological file format conversion. PMID:19238194
Sequence context-specific profiles for homology searching. PMID:19234132
Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies. PMID:19219566
The Austronesian Basic Vocabulary Database: from bioinformatics to lexomics. PMID:19204825
Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise? PMID:19200403
Disperse--a software system for design of selector probes for exon resequencing applications. PMID:19158162
A software pipeline for processing and identification of fungal ITS sequences. PMID:19146660
Structure of the pseudokinase VRK3 reveals a degraded catalytic site, a highly conserved kinase fold, and a putative regulatory binding site. PMID:19141289
Structural analysis of the DNA-binding domain of the Helicobacter pylori response regulator ArsR. PMID:19117956
Residual DNA methylation at remission is prognostic in adult Philadelphia chromosome-negative acute lymphocytic leukemia. PMID:19109226
Data deposition and annotation at the worldwide protein data bank. PMID:19082769
Genotype-phenotype databases: challenges and solutions for the post-genomic era. PMID:19065136
Transcriptome analysis in peripheral blood of humans exposed to environmental carcinogens: a promising new biomarker in environmental health studies. PMID:19057705
KAGIANA: an excel-based tool for retrieving summary information on Arabidopsis genes. PMID:19043069
Classification of fowl adenovirus serotypes by use of high-resolution melting-curve analysis of the hexon gene region. PMID:19036935
SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny. PMID:19036790
Complete genome sequence of Rhodobacter sphaeroides KD131. PMID:19028901
Evolutionary and functional divergence between the cystic fibrosis transmembrane conductance regulator and related ATP-binding cassette transporters. PMID:19020075
Genome and proteome annotation: organization, interpretation and integration. PMID:19019817
Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism. PMID:19015845
Improved identification of conserved cassette exons using Bayesian networks. PMID:19014490
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. PMID:19004872
MAGE-B2 autoantibody: a new biomarker for pediatric systemic lupus erythematosus. PMID:19004030
The UCSC Genome Browser Database: update 2009. PMID:18996895
PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots. PMID:18988624
ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes. PMID:18984624
IMGT, the international ImMunoGeneTics information system. PMID:18978023
Petabyte-scale innovations at the European Nucleotide Archive. PMID:18978013
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences. PMID:18971253
RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration. PMID:18954448
Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes. PMID:18953039
metaTIGER: a metabolic evolution resource. PMID:18953037
GOBASE: an organelle genome database. PMID:18953030
OligoArrayDb: pangenomic oligonucleotide microarray probe sets database. PMID:18948290
MDPD: an integrated genetic information resource for Parkinson's disease. PMID:18948286
MODBASE, a database of annotated comparative protein structure models and associated resources. PMID:18948282
Comparison of correspondence analysis methods for synonymous codon usage in bacteria. PMID:18940873
GenBank. PMID:18940867
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. PMID:18940824
The IMGT/HLA database. PMID:18838392
ARDB--Antibiotic Resistance Genes Database. PMID:18832362
iRefIndex: a consolidated protein interaction database with provenance. PMID:18823568
Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. PMID:18820024
Chronic lymphocytic leukemia antibodies with a common stereotypic rearrangement recognize nonmuscle myosin heavy chain IIA. PMID:18812466
Search for informative polymorphisms in candidate genes: clock genes and circadian behaviour in blue tits. PMID:18792794
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks. PMID:18782832
Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PMID:18776931
Big data: The future of biocuration. PMID:18769432
Detection and elimination of cyanobacteria from frescoes: the case of the St. Brizio Chapel (Orvieto Cathedral, Italy). PMID:18752018
Absence of mtDNA mutations in leukocytes of CADASIL patients. PMID:18710532
Mutational analysis of highly conserved aspartate residues essential to the catalytic core of the piggyBac transposase. PMID:18694512
A general definition and nomenclature for alternative splicing events. PMID:18688268
Molecular analysis of t(15;17) genomic breakpoints in secondary acute promyelocytic leukemia arising after treatment of multiple sclerosis. PMID:18650449
Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae. PMID:18628961
A genome-wide 20 K citrus microarray for gene expression analysis. PMID:18598343
Human Proteinpedia as a resource for clinical proteomics. PMID:18573810
GMDD: a database of GMO detection methods. PMID:18522755
GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways. PMID:18511460
Dynamic instability of the major urinary protein gene family revealed by genomic and phenotypic comparisons between C57 and 129 strain mice. PMID:18507838
VisANT: an integrative framework for networks in systems biology. PMID:18463131
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. PMID:18416670
NOTCH1 extracellular juxtamembrane expansion mutations in T-ALL. PMID:18411416
DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture. PMID:18411203
Database resources of the National Center for Biotechnology Information. PMID:18045790 -
GenBank
PubMed citations: 333.
333 articles citing: GenBank
Multiple Polymerase Chain Reaction for Direct Detection of Bloodstream Infection After Cardiac Surgery in a PICU. PMID:35651736
Horizontal gene transfer drives the evolution of dependencies in bacteria. PMID:35586069
DNA metabarcoding quantifies the relative biomass of arthropod taxa in songbird diets: Validation with camera-recorded diets. PMID:35571761
Soil fertility and water availability effects on trait dispersion and phylogenetic relatedness of tropical terrestrial ferns. PMID:35179630
Mycorrhizal Switching and the Role of Fungal Abundance in Seed Germination in a Fully Mycoheterotrophic Orchid, Gastrodia confusoides. PMID:35095954
Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes. PMID:34960694
Thioesterase enzyme families: Functions, structures, and mechanisms. PMID:34921469
Enterococcus innesii sp. nov., isolated from the wax moth Galleria mellonella. PMID:34919037
RLEP LAMP for the laboratory confirmation of leprosy: towards a point-of-care test. PMID:34823479
Genes underlying the evolution of tetrapod testes size. PMID:34407824
Databases for Protein-Protein Interactions. PMID:34236665
Identifying biases and their potential solutions in human microbiome studies. PMID:34006335
Sphingobacterium phlebotomi sp. nov., a new member of family Sphingobacteriaceae isolated from sand fly rearing substrate. PMID:33956595
Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches. PMID:33846382
Analysis of human total antibody repertoires in TIF1γ autoantibody positive dermatomyositis. PMID:33772100
The very early evolution of protein translocation across membranes. PMID:33684113
Bioinformatics Analysis of SARS-CoV-2 to Approach an Effective Vaccine Candidate Against COVID-19. PMID:33625681
Analysis of SARS-CoV-2 mutations in the United States suggests presence of four substrains and novel variants. PMID:33589648
In-host population dynamics of Mycobacterium tuberculosis complex during active disease. PMID:33522489
Immuno-informatics approach for B-cell and T-cell epitope based peptide vaccine design against novel COVID-19 virus. PMID:33478787
Designing of a next generation multiepitope based vaccine (MEV) against SARS-COV-2: Immunoinformatics and in silico approaches. PMID:33351863
In-silico analysis of myeloid cells across the animal kingdom reveals neutrophil evolution by colony-stimulating factors. PMID:33236983
The Unexplored Virome of Two Atlantic Coast Fish: Contribution of Next-Generation Sequencing to Fish Virology. PMID:33182306
Reverse vaccinology assisted designing of multiepitope-based subunit vaccine against SARS-CoV-2. PMID:32938504
Infection with Bacteroides Phage BV01 Alters the Host Transcriptome and Bile Acid Metabolism in a Common Human Gut Microbe. PMID:32937127
Bacillus velezensis 83 a bacterial strain from mango phyllosphere, useful for biological control and plant growth promotion. PMID:32894363
The Best-Practice Organism for Single-Species Studies of Antimicrobial Efficacy against Biofilms Is Pseudomonas aeruginosa. PMID:32872560
Virulence genes and previously unexplored gene clusters in four commensal Neisseria spp. isolated from the human throat expand the neisserial gene repertoire. PMID:32845827
Characterizing SARS-CoV-2 mutations in the United States. PMID:32818213
A comprehensive survey of integron-associated genes present in metagenomes. PMID:32689930
Detecting and correcting misclassified sequences in the large-scale public databases. PMID:32579213
Identification of RAG-like transposons in protostomes suggests their ancient bilaterian origin. PMID:32399063
An unusual metal-bound 4-fluorothreonine transaldolase from Streptomyces sp. MA37 catalyses promiscuous transaldol reactions. PMID:32140842
The sex with the reduced sex chromosome dies earlier: a comparison across the tree of life. PMID:32126186
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data. PMID:32016344
Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study. PMID:31937794
Evaluation of the Bacterial Diversity of Inner Mongolian Acidic Gruel Using Illumina MiSeq and PCR-DGGE. PMID:31894373
Molecular identification of Ehrlichia, Anaplasma, Babesia and Theileria in African elephants and their ticks. PMID:31805127
Epitope-based peptide vaccine design and target site depiction against Middle East Respiratory Syndrome Coronavirus: an immune-informatics study. PMID:31703698
Genome skimming is a low-cost and robust strategy to assemble complete mitochondrial genomes from ethanol preserved specimens in biodiversity studies. PMID:31565556
Analysis of Sinonasal Microbiota in Exacerbations of Chronic Rhinosinusitis Subgroups. PMID:31555757
Sex-Specific Linkages Between Taxonomic and Functional Profiles of Tick Gut Microbiomes. PMID:31475121
Pathogenic Protist Transmembranome database (PPTdb): a web-based platform for searching and analysis of protist transmembrane proteins. PMID:31337335
Tracing the evolution of novel features of human Toll-like receptor 4. PMID:31075178
The MACADAM database: a MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups. PMID:31032842
Modeling the Sensitivity of Aquatic Macroinvertebrates to Chemicals Using Traits. PMID:31008596
mtProtEvol: the resource presenting molecular evolution analysis of proteins involved in the function of Vertebrate mitochondria. PMID:30813887
Noninvasive Detection of Equid Herpesviruses in Fecal Samples. PMID:30446563
Large-Scale Analyses of Site-Specific Evolutionary Rates across Eukaryote Proteomes Reveal Confounding Interactions between Intrinsic Disorder, Secondary Structure, and Functional Domains. PMID:30441862
Identification of a novel nidovirus as a potential cause of large scale mortalities in the endangered Bellinger River snapping turtle (Myuchelys georgesi). PMID:30356240
Substrate Profile of the Phosphotriesterase Homology Protein from Escherichia coli. PMID:30277746
Protein mass spectrometry extends temporal blood meal detection over polymerase chain reaction in mouse-fed Chagas disease vectors. PMID:30277492
Small membranous proteins of the TorE/NapE family, crutches for cognate respiratory systems in Proteobacteria. PMID:30206249
15N photo-CIDNP MAS NMR on both photosystems and magnetic field-dependent 13C photo-CIDNP MAS NMR in photosystem II of the diatom Phaeodactylum tricornutum. PMID:30194671
Environmental stressors may cause equine herpesvirus reactivation in captive Grévy's zebras (Equus grevyi). PMID:30155350
Transcriptome-wide selection of a reliable set of reference genes for gene expression studies in potato cyst nematodes (Globodera spp.). PMID:29499068
Gilz-Activin A as a Novel Signaling Axis Orchestrating Mesenchymal Stem Cell and Th17 Cell Interplay. PMID:29344311
Chagas disease vector blood meal sources identified by protein mass spectrometry. PMID:29232402
RetrogeneDB-a database of plant and animal retrocopies. PMID:29220443
Draft Genome Sequence of Leuconostoc citreum CW28 Isolated from Pozol, a Pre-Hispanic Fermented Corn Beverage. PMID:29192074
Soil Type Has a Stronger Role than Dipterocarp Host Species in Shaping the Ectomycorrhizal Fungal Community in a Bornean Lowland Tropical Rain Forest. PMID:29163567
The eukaryotic linear motif resource - 2018 update. PMID:29136216
Using semantics for representing experimental protocols. PMID:29132408
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks. PMID:29112720
Molecular plasticity and functional enhancements of leg muscles in response to hypergravity in the fruit fly Drosophila melanogaster. PMID:28978639
Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements. PMID:28852417
Automated assembly of species metabolomes through data submission into a public repository. PMID:28830114
Cladophialophora Bantiana : A Rare Intracerebral Fungal Abscess-Case Series and Review of Literature. PMID:28825023
Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria. PMID:28800137
Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris). PMID:28751391
Structural properties of genotype-phenotype maps. PMID:28679667
Allergen-specific immunotherapy of Hymenoptera venom allergy - also a matter of diagnosis. PMID:28604163
Application of environmental DNA to detect an endangered marine skate species in the wild. PMID:28591215
Effective mosquito and arbovirus surveillance using metabarcoding. PMID:28417591
Improving the accuracy of high-throughput protein-protein affinity prediction may require better training data. PMID:28361672
Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean (Phaseolus vulgaris). PMID:28302777
Development of a multilocus-based approach for sponge (phylum Porifera) identification: refinement and limitations. PMID:28150727
Surveying Europe's Only Cave-Dwelling Chordate Species (Proteus anguinus) Using Environmental DNA. PMID:28129383
Global open data management in metabolomics. PMID:28092796
Supra-operonic clusters of functionally related genes (SOCs) are a source of horizontal gene co-transfers. PMID:28067311
Numerous small hammerhead ribozyme variants associated with Penelope-like retrotransposons cleave RNA as dimers. PMID:27858507
Characterization of the starch-acting MaAmyB enzyme from Microbacterium aurum B8.A representing the novel subfamily GH13_42 with an unusual, multi-domain organization. PMID:27808246
Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic. PMID:27685447
Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis. PMID:27512997
Longitudinal Metagenomic Analysis of Hospital Air Identifies Clinically Relevant Microbes. PMID:27482891
CD25+ FoxP3+ Memory CD4 T Cells Are Frequent Targets of HIV Infection In Vivo. PMID:27384654
The IRIDICA BAC BSI Assay: Rapid, Sensitive and Culture-Independent Identification of Bacteria and Candida in Blood. PMID:27384540
Further insight into BRUTUS domain composition and functionality. PMID:27359166
Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity. PMID:27286824
Corynebacterium pseudotuberculosis may be under anagenesis and biovar Equi forms biovar Ovis: a phylogenic inference from sequence and structural analysis. PMID:27251711
A Quantitative Approach to Analyzing Genome Reductive Evolution Using Protein-Protein Interaction Networks: A Case Study of Mycobacterium leprae. PMID:27066064
Two highly similar LAEDDTNAQKT and LTDKIGTEI epitopes in G glycoprotein may be useful for effective epitope based vaccine design against pathogenic Henipavirus. PMID:26970211
Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC). PMID:26911138
Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome. PMID:26833063
Epigenetic Segregation of Microbial Genomes from Complex Samples Using Restriction Endonucleases HpaII and McrB. PMID:26727463
PPIM: A Protein-Protein Interaction Database for Maize. PMID:26620522
DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides. PMID:26578581
Functional and expression analyses of transcripts based on full-length cDNAs of Sorghum bicolor. PMID:26546227
Viral meningitis epidemics and a single, recent, recombinant and anthroponotic origin of swine vesicular disease virus. PMID:26508717
5SRNAdb: an information resource for 5S ribosomal RNAs. PMID:26490961
Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases. PMID:26490723
No Association between Personality and Candidate Gene Polymorphisms in a Wild Bird Population. PMID:26473495
Titanium dioxide nanoparticles stimulate sea urchin immune cell phagocytic activity involving TLR/p38 MAPK-mediated signalling pathway. PMID:26412401
Functional Basis of Microorganism Classification. PMID:26317871
Molecular Detection and Characterization of Theileria Infecting Wildebeest (Connochaetes taurinus) in the Maasai Mara National Reserve, Kenya. PMID:26295263
Environmental Pressure May Change the Composition Protein Disorder in Prokaryotes. PMID:26252577
The microRNA-183 cluster: the family that plays together stays together. PMID:26170234
GenomePeek-an online tool for prokaryotic genome and metagenome analysis. PMID:26157610
Microbial- and thiosulfate-mediated dissolution of mercury sulfide minerals and transformation to gaseous mercury. PMID:26157421
Microbial species delineation using whole genome sequences. PMID:26150420
MLgsc: A Maximum-Likelihood General Sequence Classifier. PMID:26148002
FAST: FAST Analysis of Sequences Toolbox. PMID:26042145
Secondary structural entropy in RNA switch (Riboswitch) identification. PMID:25928324
Function discovery and structural characterization of a methylphosphonate esterase. PMID:25873441
Biochemical functional predictions for protein structures of unknown or uncertain function. PMID:25848497
Four RNA families with functional transient structures. PMID:25751035
The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias. PMID:25730765
Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L. PMID:25663138
Tyrosine sulfation as a protein post-translational modification. PMID:25635379
Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data. PMID:25551607
Impairments of mecA gene detection in bovine Staphylococcus spp. PMID:25477945
Information content-based Gene Ontology functional similarity measures: which one to use for a given biological data type? PMID:25474538
Long-term phenotypic evolution of bacteria. PMID:25363780
Selective microbial genomic DNA isolation using restriction endonucleases. PMID:25279840
Variation in 12 porcine genes involved in the carbohydrate moiety assembly of glycosphingolipids does not account for differential binding of F4 Escherichia coli and their fimbriae. PMID:25277275
The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines. PMID:25147557
Refined candidate region for F4ab/ac enterotoxigenic Escherichia coli susceptibility situated proximal to MUC13 in pigs. PMID:25137053
Antimalarial activity of the myxobacterial macrolide chlorotonil a. PMID:25114138
AFAL: a web service for profiling amino acids surrounding ligands in proteins. PMID:25085083
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. PMID:24958869
Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces. PMID:24885796
TSpred: a web server for the rational design of temperature-sensitive mutants. PMID:24782523
rCAD: A Novel Database Schema for the Comparative Analysis of RNA. PMID:24772454
Retrotransposon hypomethylation in melanoma and expression of a placenta-specific gene. PMID:24759919
Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative. PMID:24567391
The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data. PMID:24502833
The phylogenetic distribution and evolution of enzymes within the thymidine kinase 2-like gene family in metazoa. PMID:24500774
Profiling gene expression to distinguish the likely active diazotrophs from a sea of genetic potential in marine sediments. PMID:24447468
Phenotypic convergence in genetically distinct lineages of a Rhinolophus species complex (Mammalia, Chiroptera). PMID:24312666
eggNOG v4.0: nested orthology inference across 3686 organisms. PMID:24297252
Lactobacillus buchneri genotyping on the basis of clustered regularly interspaced short palindromic repeat (CRISPR) locus diversity. PMID:24271175
Next generation sequencing reveals the hidden diversity of zooplankton assemblages. PMID:24244737
Exploring fold space preferences of new-born and ancient protein superfamilies. PMID:24244135
Assessment of ectomycorrhizal biodiversity in Tuber macrosporum productive sites. PMID:24232503
De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq. PMID:23971877
IMSA: integrated metagenomic sequence analysis for identification of exogenous reads in a host genomic background. PMID:23717627
Histone modifications and traditional Chinese medicinals. PMID:23711355
Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function. PMID:23676670
Computational identification of functional introns: high positional conservation of introns that harbor RNA genes. PMID:23605046
Factors associated with the isolation of Nontuberculous mycobacteria (NTM) from a large municipal water system in Brisbane, Australia. PMID:23601969
The taxonomic name resolution service: an online tool for automated standardization of plant names. PMID:23324024
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis. PMID:23203876
Learning virulent proteins from integrated query networks. PMID:23198735
Evolution and diversity of periplasmic proteins involved in copper homeostasis in gamma proteobacteria. PMID:23122209
Antibody phage display assisted identification of junction plakoglobin as a potential biomarker for atherosclerosis. PMID:23110151
Global analysis of target genes of 21 members of the ZAD transcription factor family in Drosophila melanogaster. PMID:23085320
The function and evolution of the Aspergillus genome. PMID:23084572
Does the mode of plastid inheritance influence plastid genome architecture? PMID:23029453
The genomic signature of human rhinoviruses A, B and C. PMID:23028561
Separating metagenomic short reads into genomes via clustering. PMID:23009059
Structural characterization and inhibition of the Plasmodium Atg8-Atg3 interaction. PMID:22982544
Diversification rates and the latitudinal gradient of diversity in mammals. PMID:22896648
State of the art in silico tools for the study of signaling pathways in cancer. PMID:22837650
HEMD: an integrated tool of human epigenetic enzymes and chemical modulators for therapeutics. PMID:22761927
Jellyfish modulate bacterial dynamic and community structure. PMID:22745726
A stochastic evolutionary model for protein structure alignment and phylogeny. PMID:22723302
Detection of horizontal gene transfers from phylogenetic comparisons. PMID:22675653
Molecular characterization of an adaptive response to alkylating agents in the opportunistic pathogen Aspergillus fumigatus. PMID:22669901
Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations. PMID:22563243
Expansion of neurofilament medium C terminus increases axonal diameter independent of increases in conduction velocity or myelin thickness. PMID:22553027
A beginner's guide to eukaryotic genome annotation. PMID:22510764
The SLC4A1 gene is under differential selective pressure in primates infected by Plasmodium falciparum and related parasites. PMID:22426110
Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies. PMID:22396634
NeXML: rich, extensible, and verifiable representation of comparative data and metadata. PMID:22357728
Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs. PMID:22282338
RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star. PMID:22216218
Structural and functional analysis of the archaeal endonuclease Nob1. PMID:22156373
miRNEST database: an integrative approach in microRNA search and annotation. PMID:22135287
ViennaRNA Package 2.0. PMID:22115189
PDBe: Protein Data Bank in Europe. PMID:22110033
Genome-wide detection of gene extinction in early mammalian evolution. PMID:22094861
A database of immunoglobulins with integrated tools: DIGIT. PMID:22080506
Structural requirements for interaction of peroxisomal targeting signal 2 and its receptor PEX7. PMID:22057399
Epigenetic control of viral life-cycle by a DNA-methylation dependent transcription factor. PMID:22022468
FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. PMID:22006843
Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop. PMID:21994619
Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria. PMID:21985229
Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. PMID:21965651
Design and synthesis of new N-(5-trifluoromethyl)-1H-1,2,4-triazol-3-yl benzenesulfonamides as possible antimalarial prototypes. PMID:21934646
Examination of the seasonal dynamics of the toxic dinoflagellate Alexandrium catenella at Redondo Beach, California, by quantitative PCR. PMID:21926210
Dynamics of microbial community structure of and enhanced biological phosphorus removal by aerobic granules cultivated on propionate or acetate. PMID:21926195
Towards an accurate identification of mosaic genes and partial horizontal gene transfers. PMID:21917854
Selection of organisms for the co-evolution-based study of protein interactions. PMID:21910884
Multicoil2: predicting coiled coils and their oligomerization states from sequence in the twilight zone. PMID:21901122
Hypomethylation of functional retrotransposon-derived genes in the human placenta. PMID:21874386
Termination of protein synthesis in mammalian mitochondria. PMID:21873426
Detecting past positive selection through ongoing negative selection. PMID:21859804
The taming of an impossible child: a standardized all-in approach to the phylogeny of Hymenoptera using public database sequences. PMID:21851592
Open-target sparse sensing of biological agents using DNA microarray. PMID:21801424
miRTar: an integrated system for identifying miRNA-target interactions in human. PMID:21791068
Genome data mining and soil survey for the novel group 5 [NiFe]-hydrogenase to explore the diversity and ecological importance of presumptive high-affinity H(2)-oxidizing bacteria. PMID:21742924
Whole-transcriptome RNAseq analysis from minute amount of total RNA. PMID:21737426
Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes). PMID:21712341
Remote data retrieval for bioinformatics applications: an agent migration approach. PMID:21701677
Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets. PMID:21677865
Identification and characterization of CbeI, a novel thermostable restriction enzyme from Caldicellulosiruptor bescii DSM 6725 and a member of a new subfamily of HaeIII-like enzymes. PMID:21604181
sodC-based real-time PCR for detection of Neisseria meningitidis. PMID:21573213
Databases and resources for human small non-coding RNAs. PMID:21504869
Transcriptome sequencing demonstrates that human papillomavirus is not active in cutaneous squamous cell carcinoma. PMID:21490616
Comparison between nasopharyngeal swab and nasal wash, using culture and PCR, in the detection of potential respiratory pathogens. PMID:21489228
Evolution of exon-intron structure and alternative splicing. PMID:21464961
Mycobacterium lentiflavum in drinking water supplies, Australia. PMID:21392429
Phylogenetic signals and ecotoxicological responses: potential implications for aquatic biomonitoring. PMID:21365200
Systems biology: the next frontier for bioinformatics. PMID:21331364
Complete genome sequence of Ferrimonas balearica type strain (PAT). PMID:21304747
Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P). PMID:21304740
Complete genome sequence of Intrasporangium calvum type strain (7 KIP). PMID:21304734
Complete genome sequence of Olsenella uli type strain (VPI D76D-27C). PMID:21304694
Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1). PMID:21304693
Studies on monitoring and tracking genetic resources: an executive summary. PMID:21304641
Studies on the mechanism of ring hydrolysis in phenylacetate degradation: a metabolic branching point. PMID:21296885
Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution. PMID:21282711
DNA-based methods in the immunohematology reference laboratory. PMID:21257350
Genome (re-)annotation and open-source annotation pipelines. PMID:21255336
Role of a Zn-independent DksA in Zn homeostasis and stringent response. PMID:21255113
Bioinformatic identification of novel protein phosphatases in the dog genome. PMID:21240543
Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea. PMID:21194483
Mitochondrial pathogenic mutations are population-specific. PMID:21194457
Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature. PMID:21138947
On the mechanism of chloroquine resistance in Plasmodium falciparum. PMID:21124966
Novel intron markers to study the phylogeny of closely related mammalian species. PMID:21118501
The future of microbial metagenomics (or is ignorance bliss?). PMID:21107444
Characterization of maltase clusters in the genus Drosophila. PMID:21082169
Grand challenge commentary: Transforming biosynthesis into an information science. PMID:21079588
Evolutionary history of tissue kallikreins. PMID:21072173
Origin of the 1918 pandemic H1N1 influenza A virus as studied by codon usage patterns and phylogenetic analysis. PMID:21068184
SUPERFAMILY 1.75 including a domain-centric gene ontology method. PMID:21062816
ASD: a comprehensive database of allosteric proteins and modulators. PMID:21051350
Ancestral centriole and flagella proteins identified by analysis of Naegleria differentiation. PMID:21045110
PDBe: Protein Data Bank in Europe. PMID:21045060
The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. PMID:21036865
ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures. PMID:21036864
Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement. PMID:20979641
Metagenomic analysis of the viromes of three North American bat species: viral diversity among different bat species that share a common habitat. PMID:20926577
Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform. PMID:20920211
New aminoacyl-tRNA synthetase-like protein in insecta with an essential mitochondrial function. PMID:20870726
Predicting plasmid promiscuity based on genomic signature. PMID:20851899
sRNATarBase: a comprehensive database of bacterial sRNA targets verified by experiments. PMID:20843985
Prototypes of elementary functional loops unravel evolutionary connections between protein functions. PMID:20823313
Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes. PMID:20696290
RoBuST: an integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae. PMID:20691054
Eukaryotic gene invasion by a bacterial mobile insertion sequence element IS2 during cloning into a plasmid vector. PMID:20678256
Lineage-specific expansion of DNA-binding transcription factor families. PMID:20675012
Archaea signal recognition particle shows the way. PMID:20672053
Papain-like protease 1 from transmissible gastroenteritis virus: crystal structure and enzymatic activity toward viral and cellular substrates. PMID:20668092
Whole-genome sequencing reveals distinct mutational patterns in closely related laboratory and naturally propagated Francisella tularensis strains. PMID:20657845
Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies. PMID:20649993
Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms. PMID:20637123
Index-free de novo assembly and deconvolution of mixed mitochondrial genomes. PMID:20624744
PROFESS: a PROtein function, evolution, structure and sequence database. PMID:20624718
Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition. PMID:20622855
Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea. PMID:20596068
Evolution of embryonic developmental period in the marine bird families Alcidae and Spheniscidae: roles for nutrition and predation? PMID:20546608
A quick guide to large-scale genomic data mining. PMID:20523745
Thioesterases: a new perspective based on their primary and tertiary structures. PMID:20506386
Geomicrobiological properties of ultra-deep granitic groundwater from the Mizunami Underground Research Laboratory (MIU), central Japan. PMID:20473491
Functional characterization of the NF-kappaB binding site in the human NOD2 promoter. PMID:20436512
Ovine reference materials and assays for prion genetic testing. PMID:20433741
Synthetic biology approaches in drug discovery and pharmaceutical biotechnology. PMID:20396881
SNP-RFLPing 2: an updated and integrated PCR-RFLP tool for SNP genotyping. PMID:20377871
A MOD(ern) perspective on literature curation. PMID:20221640
Species-specific differences in the Pro-Ala rich region of cardiac myosin binding protein-C. PMID:20217194
Prodigal: prokaryotic gene recognition and translation initiation site identification. PMID:20211023
Inferring the ancient history of the translation machinery and genetic code via recapitulation of ribosomal subunit assembly orders. PMID:20208990
Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data. PMID:20205909
NMR-based metabolomic analysis of plants. PMID:20203669
Structural classification by the Lipase Engineering Database: a case study of Candida antarctica lipase A. PMID:20170513
Myosin cross-reactive antigen of Streptococcus pyogenes M49 encodes a fatty acid double bond hydratase that plays a role in oleic acid detoxification and bacterial virulence. PMID:20145247
Morphological, physiological and molecular biological characterisation of isolates from first cases of Acanthamoeba keratitis in Slovakia. PMID:20127114
The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions. PMID:20126622
The Thiamine diphosphate dependent Enzyme Engineering Database: a tool for the systematic analysis of sequence and structure relations. PMID:20122171
Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life. PMID:20080632
PSiFR: an integrated resource for prediction of protein structure and function. PMID:20080513
The effects of circumcision on the penis microbiome. PMID:20066050
The Zur regulon of Corynebacterium glutamicum ATCC 13032. PMID:20055984
From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase. PMID:20043185
Expanding the definition of the classical bipartite nuclear localization signal. PMID:20028483
Anaplasma phagocytophilum in Danish sheep: confirmation by DNA sequencing. PMID:20025738
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. PMID:20021646
Annotation error in public databases: misannotation of molecular function in enzyme superfamilies. PMID:20011109
Chimeric tRNAs as tools to induce proteome damage and identify components of stress responses. PMID:20007146
Quantitative comparison of microarray experiments with published leukemia related gene expression signatures. PMID:20003504
The UCSC Genome Browser. PMID:19957273
Effectiveness of a cloning and sequencing exercise on student learning with subsequent publication in the National Center for Biotechnology Information GenBank. PMID:19952101
Evaluating annotations of an Agilent expression chip suggests that many features cannot be interpreted. PMID:19948035
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PMID:19936069
NBRP databases: databases of biological resources in Japan. PMID:19934255
ACLAME: a CLAssification of Mobile genetic Elements, update 2010. PMID:19933762
An overview of the PubChem BioAssay resource. PMID:19933261
IRESite--a tool for the examination of viral and cellular internal ribosome entry sites. PMID:19917642
The UCSC Genome Browser database: update 2010. PMID:19906737
Improvements to services at the European Nucleotide Archive. PMID:19906712
PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays. PMID:19906711
Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors. PMID:19893621
IPD--the Immuno Polymorphism Database. PMID:19875415
Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons. PMID:19857263
The IntAct molecular interaction database in 2010. PMID:19850723
MeSHing molecular sequences and clinical trials: a feasibility study. PMID:19850150
REBASE--a database for DNA restriction and modification: enzymes, genes and genomes. PMID:19846593
Probe-level analysis of expression microarrays characterizes isoform-specific degradation during mouse oocyte maturation. PMID:19834616
A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life. PMID:19822009
AntigenDB: an immunoinformatics database of pathogen antigens. PMID:19820110
RESOPS: a database for analyzing the correspondence of RNA editing sites to protein three-dimensional structures. PMID:19808808
SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology. PMID:19793867
Recode-2: new design, new search tools, and many more genes. PMID:19783826
High-level chromate resistance in Arthrobacter sp. strain FB24 requires previously uncharacterized accessory genes. PMID:19758450
PAVE: program for assembling and viewing ESTs. PMID:19709403
Scherrer and Jost's symposium: the gene concept in 2008. PMID:19697075
Development and validation of a species-independent functional gene microarray that targets lactic acid bacteria. PMID:19684161
Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. PMID:19587669
DDEC: Dragon database of genes implicated in esophageal cancer. PMID:19580656
More than 9,000,000 unique genes in human gut bacterial community: estimating gene numbers inside a human body. PMID:19562079
Databases of homologous gene families for comparative genomics. PMID:19534752
Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria. PMID:19534740
GenBank and PubMed: How connected are they? PMID:19508734
From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet. PMID:19494184
Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases. PMID:19454601
BioMart Central Portal--unified access to biological data. PMID:19420058
The Microbe browser for comparative genomics. PMID:19406928
UniPrime2: a web service providing easier Universal Primer design. PMID:19401435
Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation. PMID:19379512
Database resources of the National Center for Biotechnology Information. PMID:18940862
NCBI Reference Sequences: current status, policy and new initiatives. PMID:18927115 -
GenBank
PubMed citations: 294.
294 articles citing: GenBank
Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment. PMID:35850574
Highly transmissible cytoplasmic incompatibility by the extracellular insect symbiont Spiroplasma. PMID:35602967
Diverse lineages of pathogenic Leptospira species are widespread in the environment in Puerto Rico, USA. PMID:35584143
Multiple phylogenetically-diverse, differentially-virulent Burkholderia pseudomallei isolated from a single soil sample collected in Thailand. PMID:35143500
Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. PMID:34754514
Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes. PMID:34434200
WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees. PMID:33758194
DNA Metabarcoding for the Characterization of Terrestrial Microbiota-Pitfalls and Solutions. PMID:33673098
Genome-scale revealing the central metabolic network of the fast growing methanotroph Methylomonas sp. ZR1. PMID:33452942
Multi-omics data integration considerations and study design for biological systems and disease. PMID:33347526
Bacterial Genome Wide Association Studies (bGWAS) and Transcriptomics Identifies Cryptic Antimicrobial Resistance Mechanisms in Acinetobacter baumannii. PMID:33014966
Diazotrophic bacteria from maize exhibit multifaceted plant growth promotion traits in multiple hosts. PMID:32925972
DNA from mollusc shell: a valuable and underutilised substrate for genetic analyses. PMID:32821530
ACDC, a global database of amphibian cytochrome-b sequences using reproducible curation for GenBank records. PMID:32792559
Molecular Detection and Typing of Pathogenic Leptospira in Febrile Patients and Phylogenetic Comparison with Leptospira Detected among Animals in Tanzania. PMID:32748767
Diversity of Trametes (Polyporales, Basidiomycota) in tropical Benin and description of new species Trametes parvispora. PMID:32206024
Developing and applying computational resources for biochemistry education. PMID:32203640
Metagenomic Analysis of Plant Viruses Associated With Papaya Ringspot Disease in Carica papaya L. in Kenya. PMID:32194518
Haemocystidium spp., a species complex infecting ancient aquatic turtles of the family Podocnemididae: First report of these parasites in Podocnemis vogli from the Orinoquia. PMID:31867209
Identification of Long Non-Coding RNA-Associated Competing Endogenous RNA Network in the Differentiation of Chicken Preadipocytes. PMID:31614854
Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico. PMID:31487287
Prospects of genomic resources available at the global databases for the flora of United Arab Emirates. PMID:31475085
Novel Deleterious nsSNPs within MEFV Gene that Could Be Used as Diagnostic Markers to Predict Hereditary Familial Mediterranean Fever: Using Bioinformatics Analysis. PMID:31275371
A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network. PMID:31107202
Taxono-genomics description of 'Lactobacillus raoultii sp. nov.', strain Marseille-P4006T, a new Lactobacillus species isolated from the female genital tract of a patient with bacterial vaginosis. PMID:31011428
Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events. PMID:30735490
A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic. PMID:30625164
Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect. PMID:30509188
Vertical transmission of naturally occurring Bunyamwera and insect-specific flavivirus infections in mosquitoes from islands and mainland shores of Lakes Victoria and Baringo in Kenya. PMID:30452443
A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks. PMID:30376842
GenBank. PMID:30365038
Bacterial Associates of a Gregarious Riparian Beetle With Explosive Defensive Chemistry. PMID:30344514
Analysis of Protein Complexes in the Unicellular Cyanobacterium Cyanothece ATCC 51142. PMID:30216071
Intra-host Symbiont Diversity and Extended Symbiont Maintenance in Photosymbiotic Acantharea (Clade F). PMID:30210473
Molecular characterization of a novel Aureusvirus infecting elderberry (Sambucus nigra L.). PMID:30114234
Assessment of animal hosts of pathogenic Leptospira in northern Tanzania. PMID:29879104
phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R. PMID:29874797
A Role of U12 Intron in Proper Pre-mRNA Splicing of Plant Cap Binding Protein 20 Genes. PMID:29755485
Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm. PMID:29672525
Noncontiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2T , the second Intestinimonas species cultured from the human gut. PMID:29654664
Shedding light on eDNA: neither natural levels of UV radiation nor the presence of a filter feeder affect eDNA-based detection of aquatic organisms. PMID:29624607
Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection. PMID:29545292
Complete Genome Sequence of Mycobacterium sp. Strain 4858. PMID:29449406
Complete Genome Sequence of Mycobacterium sp. Strain 3519A. PMID:29371369
Taxonogenomic description of four new Clostridium species isolated from human gut: 'Clostridium amazonitimonense', 'Clostridium merdae', 'Clostridium massilidielmoense' and 'Clostridium nigeriense'. PMID:29348922
Draft Genome Sequence of Mycobacterium setense CSUR47. PMID:29348332
Analysis of Draft Genome Sequence of Pseudomonas sp. QTF5 Reveals Its Benzoic Acid Degradation Ability and Heavy Metal Tolerance. PMID:29270429
GenBank. PMID:29140468
Extending SEQenv: a taxa-centric approach to environmental annotations of 16S rDNA sequences. PMID:29038749
Noncontiguous finished genome sequences and descriptions of 'Paenibacillus bouchesdurhonensis,' 'Paenibacillus rubinfantis,' 'Paenibacillus senegalimassiliensis' and 'Paenibacillus tuaregi' identified by culturomics. PMID:28912952
Assessing and Exploiting Functional Diversity in Germplasm Pools to Enhance Abiotic Stress Adaptation and Yield in Cereals and Food Legumes. PMID:28900432
Molecular confirmation of Lassa fever imported into Ghana. PMID:28879105
A non-destructive DNA sampling technique for herbarium specimens. PMID:28859137
Draft Genome Sequence of Methylocaldum sp. SAD2, a Methanotrophic Strain That Can Convert Raw Biogas to Methanol in the Presence of Hydrogen Sulfide. PMID:28798172
Contacts in the last 90,000 years over the Strait of Gibraltar evidenced by genetic analysis of wild boar (Sus scrofa). PMID:28742834
Noncontiguous finished genome sequences and description of Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilinigeriensis, Bacillus phocaeensis and Bacillus tuaregi, five new species identified by culturomics. PMID:28706723
Draft Genome Sequence of Mycobacterium boenickei CIP 107829. PMID:28473389
Genome characteristics of the proteorhodopsin-containing marine flavobacterium Polaribacter dokdonensis DSW-5. PMID:28432541
Phenotypic and genotypic identification of hard ticks of the genus Haemaphysalis (Acari: Ixodidae) in Peninsular Malaysia. PMID:28409404
Draft Genome Sequence of Mycobacterium colombiense. PMID:28385843
Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase. PMID:28356077
Redefining the differences in gene content between Yersinia pestis and Yersinia pseudotuberculosis using large-scale comparative genomics. PMID:28348813
Integron-Associated DfrB4, a Previously Uncharacterized Member of the Trimethoprim-Resistant Dihydrofolate Reductase B Family, Is a Clinically Identified Emergent Source of Antibiotic Resistance. PMID:28242670
Low host specificity and abundance of frugivorous lepidoptera in the lowland rain forests of Papua New Guinea. PMID:28231249
Paenibacillus phocaensis sp. nov., isolated from the gut microbiota of a healthy infant. PMID:28116105
UUAT1 Is a Golgi-Localized UDP-Uronic Acid Transporter That Modulates the Polysaccharide Composition of Arabidopsis Seed Mucilage. PMID:28062750
Rubeoparvulum massiliense gen. nov., sp. nov., a new bacterial genus isolated from the human gut of a Senegalese infant with severe acute malnutrition. PMID:28053703
Noncontiguous finished genome sequence and description of Streptococcus timonensis sp. nov. isolated from the human stomach. PMID:28050252
ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions. PMID:27899596
GenBank. PMID:27899564
Description of Clostridium phoceensis sp. nov., a new species within the genus Clostridium. PMID:27818774
Plant Microbe Interactions in Post Genomic Era: Perspectives and Applications. PMID:27725809
Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin. PMID:27713835
A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens. PMID:27677796
Identification and comparative analysis of the microRNA transcriptome in roots of two contrasting tobacco genotypes in response to cadmium stress. PMID:27667199
The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. PMID:27651357
Environmental DNA reveals that rivers are conveyer belts of biodiversity information. PMID:27572523
Draft Genome Sequence of Mycobacterium acapulcensis Strain CSURP1424. PMID:27516522
Draft Genome Sequence of Carotenoid Producing Yellow Pigmented Planococcus maritimus MKU009. PMID:27512519
Tessaracoccus massiliensis sp. nov., a new bacterial species isolated from the human gut. PMID:27358740
Adaptive Gene Loss? Tracing Back the Pseudogenization of the Rabbit CCL8 Chemokine. PMID:27306379
High-quality genome sequence and description of Bacillus ndiopicus strain FF3(T) sp. nov. PMID:27257496
Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11(T), the type strain of Paenibacillus antibioticophila. PMID:27257493
Noncontiguous finished genome sequence and description of Nocardioides massiliensis sp. nov. GD13(T). PMID:27257488
Noncontiguous finished genome sequence and description of Planococcus massiliensis sp. nov., a moderately halophilic bacterium isolated from the human gut. PMID:27257487
Biological characterization of the hygrobafilomycin antibiotic JBIR-100 and bioinformatic insights into the hygrolide family of natural products. PMID:27234886
PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions. PMID:27224906
Non-contiguous finished genome sequence and description of Streptococcus varani sp. nov. PMID:27158513
Genome sequence and description of Desnuesiella massiliensis gen. nov., sp. nov. a new member of family Clostridiaceae. PMID:27158511
DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses. PMID:27142414
High-quality genome sequencing and description of Dermabacter indicis sp. nov. PMID:27081494
High-quality draft genome sequence and description of Haemophilus massiliensis sp. nov. PMID:27081435
The Truffle Microbiome: Species and Geography Effects on Bacteria Associated with Fruiting Bodies of Hypogeous Pezizales. PMID:27026101
High-quality genome sequence and description of Paenibacillus dakarensis sp. nov. PMID:26958345
Protecting Free-Living Dormice: Molecular Identification of Cestode Parasites in Captive Dormice (Muscardinus avellanarius) Destined for Reintroduction. PMID:26957436
Genome sequence and description of Anaerosalibacter massiliensis sp. nov. PMID:26937282
High-quality genome sequence and description of Chryseobacterium senegalense sp. nov. PMID:26933502
Genome analysis of Listeria ivanovii strain G770 that caused a deadly aortic prosthesis infection. PMID:26933501
Determinants of flammability in savanna grass species. PMID:26877549
Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years. PMID:26870786
Noncontiguous finished genome sequence and description of Gabonia massiliensis gen. nov., sp. nov. PMID:26862432
Noncontiguous finished genome sequence and description of Kallipyga gabonensis sp. nov. PMID:26862430
Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances. PMID:26773059
Draft genome sequence of Citrobacter freundii strain ST2, a γ-proteobacterium that produces N-acylhomoserine lactones. PMID:26697383
Genome sequence and description of Mannheimia massilioguelmaensis sp. nov. PMID:26693284
Virgibacillus senegalensis sp. nov., a new moderately halophilic bacterium isolated from human gut. PMID:26693281
Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov. PMID:26669711
Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. PMID:26649182
Spider Web DNA: A New Spin on Noninvasive Genetics of Predator and Prey. PMID:26606730
Global prevalence and distribution of genes and microorganisms involved in mercury methylation. PMID:26601305
GenBank. PMID:26590407
Noncontiguous finished genome sequence and description of Necropsobacter massiliensis sp. nov. PMID:26587237
Draft Genome Sequence of Mycobacterium mucogenicum Strain CSUR P2099. PMID:26586900
<mds_ies_db>: a database of ciliate genome rearrangements. PMID:26586804
Genome sequence and description of Pantoea septica strain FF5. PMID:26568786
Codon Bias Patterns of E. coli's Interacting Proteins. PMID:26566157
Draft Genome Sequence of Mycobacterium peregrinum Strain CSUR P2098. PMID:26543113
High-Throughput Sequencing-The Key to Rapid Biodiversity Assessment of Marine Metazoa? PMID:26479071
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. PMID:26424082
Targeting Lysine Deacetylases (KDACs) in Parasites. PMID:26402733
Non-contiguous finished genome sequence and description of Clostridium ihumii sp. nov. PMID:26388967
FMiR: A Curated Resource of Mitochondrial DNA Information for Fish. PMID:26317619
Adaptation of the Mitochondrial Genome in Cephalopods: Enhancing Proton Translocation Channels and the Subunit Interactions. PMID:26285039
leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences. PMID:26264559
High-quality genome sequence and description of Bacillus dielmoensis strain FF4(T) sp. nov. PMID:26221422
EvoDB: a database of evolutionary rate profiles, associated protein domains and phylogenetic trees for PFAM-A. PMID:26140928
Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. PMID:26136847
Posttranslational modification of a vanadium nitrogenase. PMID:26097040
A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads. PMID:26052341
Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota. PMID:25939834
Analysis of phylogenetic and functional diverge in plant nine-cis epoxycarotenoid dioxygenase gene family. PMID:25929830
Subsistence strategies in traditional societies distinguish gut microbiomes. PMID:25807110
Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence. PMID:25803742
Non-contiguous finished genome sequence and description of Clostridium saudii sp. nov. PMID:25780501
Complete Genome Sequence of "Candidatus Sulcia muelleri" ML, an Obligate Nutritional Symbiont of Maize Leafhopper (Dalbulus maidis). PMID:25635014
Identification and computational analysis of gene regulatory elements. PMID:25561628
Genome Sequence of Afipia felis Strain 76713, Isolated in Hospital Water Using an Amoeba Co-Culture Procedure. PMID:25540358
The Human Variome Project: ensuring the quality of DNA variant databases in inherited renal disease. PMID:25384529
Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. PMID:25333462
Survey of chimeric IStron elements in bacterial genomes: multiple molecular symbioses between group I intron ribozymes and DNA transposons. PMID:25324310
Optimizing high performance computing workflow for protein functional annotation. PMID:25313296
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. PMID:25281301
Complete Genome Sequence of Vibrio vulnificus 93U204, a Bacterium Isolated from Diseased Tilapia in Taiwan. PMID:25278541
Taxonomically restricted genes of Craterostigma plantagineum are modulated in their expression during dehydration and rehydration. PMID:25262421
Randomness and preserved patterns in cancer network. PMID:25220184
Genome sequence of a salmonella phage used to control salmonella transmission in Swine. PMID:25212610
Complete Genome Sequences of Two Escherichia coli O157:H7 Phages Effective in Limiting Contamination of Food Products. PMID:25212609
Genome sequence and description of Bacteroides timonensis sp. nov. PMID:25197491
Non-contiguous finished genome sequence and description of Collinsella massiliensis sp. nov. PMID:25197489
Genome sequence and description of Corynebacterium ihumii sp. nov. PMID:25197488
Non contiguous-finished genome sequence and description of Clostridium jeddahense sp. nov. PMID:25197479
Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov. PMID:25197478
Non contiguous-finished genome sequence and description of Enorma timonensis sp. nov. PMID:25197477
Genome sequence and description of Nesterenkonia massiliensis sp. nov. strain NP1(T.). PMID:25197469
Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium. PMID:25197464
Non-contiguous finished genome sequence and description of Halopiger goleamassiliensis sp. nov. PMID:25197441
Transcriptionally and post-transcriptionally regulated microRNAs in heat stress response in barley. PMID:25183744
Computational approaches for evaluating the effect of sequence variations and the intrinsically disordered C-terminal region of the Helicobacter pylori CagA protein on the interaction with tyrosine kinase Src. PMID:25116152
Genome-wide analysis of salt-responsive and novel microRNAs in Populus euphratica by deep sequencing. PMID:25079824
A dedicated database system for handling multi-level data in systems biology. PMID:25053973
Nanoinformatics knowledge infrastructures: bringing efficient information management to nanomedical research. PMID:24932210
Draft Genome Sequence of Mycobacterium triplex DSM 44626. PMID:24874681
Integrative transcriptome meta-analysis reveals widespread sex-biased gene expression at the human fetal-maternal interface. PMID:24867328
Assessing genetic diversity among Brettanomyces yeasts by DNA fingerprinting and whole-genome sequencing. PMID:24814796
Draft Genome Sequence of Mycobacterium vulneris DSM 45247T. PMID:24812218
Draft Genome Sequence of Mycobacterium mageritense DSM 44476T. PMID:24786954
The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. PMID:24749011
Draft Genome Sequence of Mycobacterium asiaticum Strain DSM 44297. PMID:24744338
Draft Genome Sequence of Mycobacterium austroafricanum DSM 44191. PMID:24744336
Draft Genome Sequence of Mycobacterium cosmeticum DSM 44829. PMID:24723727
Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen xanthomonas campestris pathovar musacearum. PMID:24704974
Internal transcribed spacer 1 secondary structure analysis reveals a common core throughout the anaerobic fungi (Neocallimastigomycota). PMID:24663345
Underdiagnosis of foodborne hepatitis A, The Netherlands, 2008-2010(1.). PMID:24655539
STINGRAY: system for integrated genomic resources and analysis. PMID:24606808
Literature classification for semi-automated updating of biological knowledgebases. PMID:24564403
pY RNA1-s2: a highly retina-enriched small RNA that selectively binds to Matrin 3 (Matr3). PMID:24558381
Molecular evolution of the substrate utilization strategies and putative virulence factors in mosquito-associated Spiroplasma species. PMID:24534435
COV2HTML: a visualization and analysis tool of bacterial next generation sequencing (NGS) data for postgenomics life scientists. PMID:24512253
Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov. PMID:24501653
Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium. PMID:24501638
Non-contiguous finished genome sequence and description of Megasphaera massiliensis sp. nov. PMID:24501636
Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI. PMID:24501634
Two Arabidopsis loci encode novel eukaryotic initiation factor 4E isoforms that are functionally distinct from the conserved plant eukaryotic initiation factor 4E. PMID:24501003
Expression line approach to recombinant human epidermal growth factor into the yeast, Pichia pastoris from Huh-7 cell line. PMID:24413989
Complete Genome Sequence of Spiroplasma apis B31T (ATCC 33834), a Bacterium Associated with May Disease of Honeybees (Apis mellifera). PMID:24407648
Isolation and characterization of three cassava elongation factor 1 alpha (MeEF1A) promoters. PMID:24404183
ITEP: an integrated toolkit for exploration of microbial pan-genomes. PMID:24387194
Pigs fed camelina meal increase hepatic gene expression of cytochrome 8b1, aldehyde dehydrogenase, and thiosulfate transferase. PMID:24383433
Identification of cytotoxic T lymphocyte epitopes on swine viruses: multi-epitope design for universal T cell vaccine. PMID:24358361
MOPED enables discoveries through consistently processed proteomics data. PMID:24350770
A phylogenomic approach to bacterial subspecies classification: proof of concept in Mycobacterium abscessus. PMID:24330254
Chemical annotation of small and peptide-like molecules at the Protein Data Bank. PMID:24291661
ModBase, a database of annotated comparative protein structure models and associated resources. PMID:24271400
Draft Genome Sequence of Lactobacillus plantarum Strain Lp91, a Promising Indian Probiotic Isolate of Human Gut Origin. PMID:24265501
BioNames: linking taxonomy, texts, and trees. PMID:24244913
Draft Genome Sequence of Lactobacillus fermentum Lf1, an Indian Isolate of Human Gut Origin. PMID:24233584
Human cytomegalovirus major immediate early 1 protein targets host chromosomes by docking to the acidic pocket on the nucleosome surface. PMID:24227840
Making research data repositories visible: the re3data.org Registry. PMID:24223762
Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences. PMID:24175627
Lineage-specific duplications of Muroidea Faim and Spag6 genes and atypical accelerated evolution of the parental Spag6 gene. PMID:24071998
Assessment and reconstruction of novel HSP90 genes: duplications, gains and losses in fungal and animal lineages. PMID:24066039
FishMicrosat: a microsatellite database of commercially important fishes and shellfishes of the Indian subcontinent. PMID:24047532
AbaA regulates conidiogenesis in the ascomycete fungus Fusarium graminearum. PMID:24039821
Analysis of the gut microbiota of walking sticks (Phasmatodea). PMID:24025149
Transcriptome analysis of two buffalograss cultivars. PMID:24024986
Non contiguous-finished genome sequence and description of Peptoniphilus obesi sp. nov. PMID:24019985
Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts. PMID:23995941
Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the Family Erysipelotrichaceae. PMID:23991263
Non contiguous-finished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new member of the Family Coriobacteriaceae. PMID:23991260
Non contiguous-finished genome sequence and description of Bacillus massiliosenegalensis sp. nov. PMID:23991258
LabTrove: a lightweight, web based, laboratory "blog" as a route towards a marked up record of work in a bioscience research laboratory. PMID:23935832
Comparison of metabolic capacities and inference of gene content evolution in mosquito-associated Spiroplasma diminutum and S. taiwanense. PMID:23873917
Analysis and annotation of the hexaploid oat seed transcriptome. PMID:23845136
Widespread occurrence of bacterial human virulence determinants in soil and freshwater environments. PMID:23835169
Novel polymerase chain reaction-restriction fragment length polymorphism assay to determine internal transcribed spacer-2 group in the Chagas disease vector, Triatoma dimidiata (Latreille, 1811). PMID:23828007
The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution, Molecular Marker Identification, and Phylogenetic Implications in Asterids. PMID:23825699
Transcriptome Analysis and Screening for Potential Target Genes for RNAi-Mediated Pest Control of the Beet Armyworm, Spodoptera exigua. PMID:23823756
Peptaibols, tetramic acid derivatives, isocoumarins, and sesquiterpenes from a Bionectria sp. (MSX 47401). PMID:23806109
Novel Burkholderia mallei virulence factors linked to specific host-pathogen protein interactions. PMID:23800426
Phylogenetic systematics of Schacontia Dyar with descriptions of eight new species (Lepidoptera, Crambidae). PMID:23794861
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi. PMID:23789083
Corroborating molecular species discovery: Four new pine-feeding species of Chionaspis (Hemiptera, Diaspididae). PMID:23717184
Complete genomes of two dipteran-associated spiroplasmas provided insights into the origin, dynamics, and impacts of viral invasion in spiroplasma. PMID:23711669
A deep analysis of the small non-coding RNA population in Schistosoma japonicum eggs. PMID:23691136
Complete plastid genome sequence of the basal asterid Ardisia polysticta Miq. and comparative analyses of asterid plastid genomes. PMID:23638113
Classification of the adenylation and acyl-transferase activity of NRPS and PKS systems using ensembles of substrate specific hidden Markov models. PMID:23637983
Proposal for a unified norovirus nomenclature and genotyping. PMID:23615870
Reproducible probe-level analysis of the Affymetrix Exon 1.0 ST array with R/Bioconductor. PMID:23603090
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. PMID:23575371
Big data opportunities for global infectious disease surveillance. PMID:23565065
Complete Genome Sequence of Serratia marcescens WW4. PMID:23558532
Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa. PMID:23542206
Genetic structure of introduced populations: 120-year-old DNA footprint of historic introduction in an insular small mammal population. PMID:23532702
Phylogeny as a proxy for ecology in seagrass amphipods: which traits are most conserved? PMID:23505433
myo-inositol and D-ribose ligand discrimination in an ABC periplasmic binding protein. PMID:23504019
Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones. PMID:23503598
One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012. PMID:23494302
Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov. PMID:23459006
Isolation and Functional Analysis of ZmLTP3, a Homologue to Arabidopsis LTP3. PMID:23455470
Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov. PMID:23449949
Genome mining for methanobactins. PMID:23442874
Towards a bioinformatics of patterning: a computational approach to understanding regulative morphogenesis. PMID:23429669
Diversity of CRISPR systems in the euryarchaeal Pyrococcales. PMID:23422322
Whole Genome Sequencing and Comparative Analysis of Bartonella bacilliformis Strain INS, the Causative Agent of Carrion's Disease. PMID:23409255
Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov. PMID:23408737
Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov. PMID:23408487
Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov. PMID:23408485
Non-contiguous finished genome sequence and description of Anaerococcus vaginalis. PMID:23407456
Genome sequence and description of Alistipes senegalensis sp. nov. PMID:23407265
Evolutionary history of eukaryotic α-glucosidases from the α-amylase family. PMID:23397242
On the reliability of DNA sequences of Ophiocordyceps sinensis in public databases. PMID:23397071
The annotation-enriched non-redundant patent sequence databases. PMID:23396323
Global mapping of infectious disease. PMID:23382431
Deciphering genomic virulence traits of a Staphylococcus epidermidis strain causing native-valve endocarditis. PMID:23363834
Cloning, annotation and developmental expression of the chicken intestinal MUC2 gene. PMID:23349743
Comparative genome analysis of Spiroplasma melliferum IPMB4A, a honeybee-associated bacterium. PMID:23324436
Developmentally regulated expression and complex processing of barley pri-microRNAs. PMID:23324356
Orchidstra: an integrated orchid functional genomics database. PMID:23324169
PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset. PMID:23282181
Computational analysis of transcriptome of Indian major carp, Labeo rohita (Hamilton-Buchanan, 1822) for functional annotation. PMID:23275698
Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage. PMID:23264566
Evaluation method for the potential functionome harbored in the genome and metagenome. PMID:23234305
GenBank. PMID:23193287
GenColors-based comparative genome databases for small eukaryotic genomes. PMID:23193285
Database resources of the National Center for Biotechnology Information. PMID:23193264
Systems biology of pathogen-host interaction: networks of protein-protein interaction within pathogens and pathogen-human interactions in the post-genomic era. PMID:23193100
DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters. PMID:23185043
The International Nucleotide Sequence Database Collaboration. PMID:23180798
DDBJ new system and service refactoring. PMID:23180790
Why share data? Lessons learned from the fMRIDC. PMID:23160115
Draft genome sequence of Pantoea sp. strain A4, a Rafflesia-associated bacterium that produces N-acylhomoserine lactones as quorum-sensing molecules. PMID:23144374
ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data. PMID:23143107
The human homolog of Escherichia coli endonuclease V is a nucleolar protein with affinity for branched DNA structures. PMID:23139746
Whole-genome sequence of N-acylhomoserine lactone-synthesizing and -degrading Acinetobacter sp. strain GG2. PMID:23105061
ClusterMine360: a database of microbial PKS/NRPS biosynthesis. PMID:23104377
The IMGT/HLA database. PMID:23080122
Culturable bacterial microbiota of Plagiodera versicolora (L.) (Coleoptera: Chrysomelidae) and virulence of the isolated strains. PMID:23054688
A response regulator interfaces between the Frz chemosensory system and the MglA/MglB GTPase/GAP module to regulate polarity in Myxococcus xanthus. PMID:23028358
Performance of VIDISCA-454 in feces-suspensions and serum. PMID:23012629
AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities. PMID:22967011
Diversity and versatility of the Thermotoga maritima sugar kinome. PMID:22885293
Identification and characterization of argonaute protein, Ago2 and its associated small RNAs in Schistosoma japonicum. PMID:22860145
Modeling the yew tree tubulin and a comparison of its interaction with paclitaxel to human tubulin. PMID:22833053
Evolution of the land plant exocyst complexes. PMID:22826714
Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis. PMID:22747707
MuteinDB: the mutein database linking substrates, products and enzymatic reactions directly with genetic variants of enzymes. PMID:22730453
Anaplasma phagocytophilum: deceptively simple or simply deceptive? PMID:22702526
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts. PMID:22641850
VarioWatch: providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing era. PMID:22618869
A comparative evaluation of sequence classification programs. PMID:22574964
Sequence fingerprints of enzyme specificities from the glycoside hydrolase family GH57. PMID:22527043
The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012. PMID:22508994
The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:22144685
Database resources of the National Center for Biotechnology Information. PMID:22140104 -
GenBank
PubMed citations: 289.
289 articles citing: GenBank
Embedding gene trees into phylogenetic networks by conflict resolution algorithms. PMID:35590416
The W-Acidic Motif of Histidine Kinase WalK Is Required for Signaling and Transcriptional Regulation in Streptococcus mutans. PMID:35558126
Response of the Anaerobic Methanotrophic Archaeon Candidatus "Methanoperedens nitroreducens" to the Long-Term Ferrihydrite Amendment. PMID:35509320
The structural shift and collaboration capacity in GenBank Networks: A longitudinal study. PMID:35434639
Clone and Function Verification of the OPR gene in Brassica napus Related to Linoleic Acid Synthesis. PMID:35410118
DBHR: a collection of databases relevant to human research. PMID:35251694
Developing Actinobacterial Endophytes as Biocontrol Products for Fusarium pseudograminearum in Wheat. PMID:34268299
Association and Occurrence of Bifidobacterial Phylotypes Between Breast Milk and Fecal Microbiomes in Mother-Infant Dyads During the First 2 Years of Life. PMID:34163448
Global variation in SARS-CoV-2 proteome and its implication in pre-lockdown emergence and dissemination of 5 dominant SARS-CoV-2 clades. PMID:34147651
First Genome-Scale Metabolic Model of Dolosigranulum pigrum Confirms Multiple Auxotrophies. PMID:33918864
Immuno-Informatics Analysis of Pakistan-Based HCV Subtype-3a for Chimeric Polypeptide Vaccine Design. PMID:33801143
Lead DEAD/H box helicase biomarkers with the therapeutic potential identified by integrated bioinformatic approaches in lung cancer. PMID:33425256
Pathogen Infection and Host-Resistance Interactively Affect Root-Associated Fungal Communities in Watermelon. PMID:33424807
Poxvirus-encoded TNF receptor homolog dampens inflammation and protects from uncontrolled lung pathology during respiratory infection. PMID:33046647
Studies on sugar transporter CRT1 reveal new characteristics that are critical for cellulase induction in Trichoderma reesei. PMID:32944074
GSMN-ML- a genome scale metabolic network reconstruction of the obligate human pathogen Mycobacterium leprae. PMID:32628669
Multiepitope-Based Subunit Vaccine Design and Evaluation against Respiratory Syncytial Virus Using Reverse Vaccinology Approach. PMID:32521680
QuantTB - a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data. PMID:31992201
New Data on the Systematics of Comb-fin Squids Chtenopteryx spp. (Cephalopoda: Chtenopterygidae) from the Canary Islands. PMID:31966280
A Method for the Structure-Based, Genome-Wide Analysis of Bacterial Intergenic Sequences Identifies Shared Compositional and Functional Features. PMID:31652625
Genetic variation of avian malaria in the tropical Andes: a relationship with the spatial distribution of hosts. PMID:30971233
Detection and variability analyses of CRISPR-like loci in the H. pylori genome. PMID:30648020
Nitrogen-Fixing Bacteria Associated with Peltigera Cyanolichens and Cladonia Chlorolichens. PMID:30477264
Comparative morphology and evolution of the cnidosac in Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia). PMID:30473719
Risk Locus Identification Ties Alcohol Withdrawal Symptoms to SORCS2. PMID:30252935
Identification of errors in the IEDB using ontologies. PMID:29688357
Decision Tree Algorithm-Generated Single-Nucleotide Polymorphism Barcodes of rbcL Genes for 38 Brassicaceae Species Tagging. PMID:29551885
Genome analysis of two novel Pseudomonas strains exhibiting differential hypersensitivity reactions on tobacco seedlings reveals differences in nonflagellar T3SS organization and predicted effector proteins. PMID:29464939
Inference of genetic marker concentrations from field surveys to detect environmental DNA using Bayesian updating. PMID:29381694
Percolation in protein sequence space. PMID:29261740
Avian Plasmodium in Eastern Austrian mosquitoes. PMID:28962620
The elaborate route for UDP-arabinose delivery into the Golgi of plants. PMID:28373556
Comparative genomics of Clavibacter michiganensis subspecies, pathogens of important agricultural crops. PMID:28319117
Feline Immunodeficiency Virus Cross-Species Transmission: Implications for Emergence of New Lentiviral Infections. PMID:28003486
Recent and dynamic transposable elements contribute to genomic divergence under asexuality. PMID:27821059
Identification of anthocyanin biosynthesis related microRNAs in a distinctive Chinese radish (Raphanus sativus L.) by high-throughput sequencing. PMID:27817120
Comparative Profiling of miRNAs and Target Gene Identification in Distant-Grafting between Tomato and Lycium (Goji Berry). PMID:27803702
Rapid enzyme regeneration results in the striking catalytic longevity of an engineered, single species, biocatalytic biofilm. PMID:27769259
Genome-Wide Identification and Characterization of MicroRNAs and Target Genes in Lonicera japonica. PMID:27711182
Host range expansion is density dependent. PMID:27558697
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. PMID:27535938
Heterologous, Expression, and Characterization of Thermostable Glucoamylase Derived from Aspergillus flavus NSH9 in Pichia pastoris. PMID:27504454
The Arabidopsis Golgi-localized GDP-L-fucose transporter is required for plant development. PMID:27381418
An AT-barrier mechanically controls DNA reannealing under tension. PMID:27378772
RNAlien - Unsupervised RNA family model construction. PMID:27330139
Tropical Drosophila pandora carry Wolbachia infections causing cytoplasmic incompatibility or male killing. PMID:27282489
Keeping All the PIECES: Phylogenetically Informed Ex Situ Conservation of Endangered Species. PMID:27257671
Identification of a Non-Pentapeptide Region Associated with Rapid Mycobacterial Evolution. PMID:27149271
Variability of Bacterial Communities in the Moth Heliothis virescens Indicates Transient Association with the Host. PMID:27139886
The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone. PMID:27060125
Genome-Wide Comparative Analysis of Chemosensory Gene Families in Five Tsetse Fly Species. PMID:26886411
SBR-Blood: systems biology repository for hematopoietic cells. PMID:26590403
Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing. PMID:26488407
Phylogenetic Co-Occurrence of ExoR, ExoS, and ChvI, Components of the RSI Bacterial Invasion Switch, Suggests a Key Adaptive Mechanism Regulating the Transition between Free-Living and Host-Invading Phases in Rhizobiales. PMID:26309130
Tradeoff between robustness and elaboration in carotenoid networks produces cycles of avian color diversification. PMID:26289047
Clinical Relevance of Nontuberculous Mycobacteria Isolated from Sputum in a Gold Mining Workforce in South Africa: An Observational, Clinical Study. PMID:26180817
Diversity in a Cold Hot-Spot: DNA-Barcoding Reveals Patterns of Evolution among Antarctic Demosponges (Class Demospongiae, Phylum Porifera). PMID:26091103
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. PMID:26072502
DNA barcodes from four loci provide poor resolution of taxonomic groups in the genus Crataegus. PMID:25926325
Identification of microRNA genes in three opisthorchiids. PMID:25898350
Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics. PMID:25807523
Insects' RNA Profiling Reveals Absence of "Hidden Break" in 28S Ribosomal RNA Molecule of Onion Thrips, Thrips tabaci. PMID:25767721
Defining the gene repertoire and spatiotemporal expression profiles of adhesion G protein-coupled receptors in zebrafish. PMID:25715737
Comparative in-silico genome analysis of Leishmania (Leishmania) donovani: A step towards its species specificity. PMID:25606461
Identification of microRNAs and target genes in the fruit and shoot tip of Lycium chinense: a traditional Chinese medicinal plant. PMID:25587984
Identification of microRNAs differentially expressed involved in male flower development. PMID:25576251
Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates. PMID:25549322
Application of direct PCR in rapid rDNA ITS haplotype determination of the hyperparasitic fungus Sphaeropsis visci (Botryosphaeriaceae). PMID:25332869
Identification of a dinucleotide signature that discriminates coding from non-coding long RNAs. PMID:25250049
RADB: a database of rheumatoid arthritis-related polymorphisms. PMID:25228593
Phenotypic profiling of ABC transporter coding genes in Myxococcus xanthus. PMID:25101061
The GBIF integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet. PMID:25099149
The domain landscape of virus-host interactomes. PMID:24991570
Reticulate evolution in North American black-fruited hawthorns (Crataegus section Douglasia; Rosaceae): evidence from nuclear ITS2 and plastid sequences. PMID:24984714
A broad survey of hydraulic and mechanical safety in the xylem of conifers. PMID:24916072
Diffusion of influenza viruses among migratory birds with a focus on the Southwest United States. PMID:24910106
Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing. PMID:24904564
The complex hybrid origins of the root knot nematodes revealed through comparative genomics. PMID:24860695
Building megaphylogenies for macroecology: taking up the challenge. PMID:24790290
Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil. PMID:24743730
Evolution of puma lentivirus in bobcats (Lynx rufus) and mountain lions (Puma concolor) in North America. PMID:24741092
Investigation of the microbial metabolism of carbon dioxide and hydrogen in the kangaroo foregut by stable isotope probing. PMID:24621520
The evolution of reproduction-related NLRP genes. PMID:24615281
BiCluE - Exact and heuristic algorithms for weighted bi-cluster editing of biomedical data. PMID:24565035
Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso. PMID:24564966
New insights into the evolution and structure of Colletotrichum plant-like subtilisins (CPLSs). PMID:24563701
pY RNA1-s2: a highly retina-enriched small RNA that selectively binds to Matrin 3 (Matr3). PMID:24558381
Conotruncal heart defects and common variants in maternal and fetal genes in folate, homocysteine, and transsulfuration pathways. PMID:24535845
Prediction of B-Cell Epitopes in Listeriolysin O, a Cholesterol Dependent Cytolysin Secreted by Listeria monocytogenes. PMID:24523732
Identification of aerobic Gram-positive bacilli by use of Vitek MS. PMID:24501030
Refined NrfA phylogeny improves PCR-based nrfA gene detection. PMID:24463965
The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast. PMID:24453548
A comprehensive phylogenetic analysis of deadenylases. PMID:24348009
Identification and profiling of novel and conserved microRNAs during the flower opening process in Prunus mume via deep sequencing. PMID:24343764
Helical antifreeze proteins have independently evolved in fishes on four occasions. PMID:24324684
Metagenomic Analysis of the Dynamic Changes in the Gut Microbiome of the Participants of the MARS-500 Experiment, Simulating Long Term Space Flight. PMID:24303207
Structural and gene expression analyses of uptake hydrogenases and other proteins involved in nitrogenase protection in Frankia. PMID:24287649
HPDB-Haskell library for processing atomic biomolecular structures in Protein Data Bank format. PMID:24267035
Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-Seq. PMID:24204709
Ectomycorrhizal fungi contribute to soil organic matter cycling in sub-boreal forests. PMID:24173458
Comparative viral metagenomics of environmental samples from Korea. PMID:24124407
The impact of Helicobacter pylori infection on the gastric microbiota of the rhesus macaque. PMID:24116104
Transcription patterns of genes encoding four metallothionein homologs in Daphnia pulex exposed to copper and cadmium are time- and homolog-dependent. PMID:24113165
Detection of PCV-2 DNA in stool samples from infants vaccinated with RotaTeq®. PMID:24104203
Characterization and phylogenetic analysis of the mitochondrial genome of Glarea lozoyensis indicates high diversity within the order Helotiales. PMID:24086376
Genome-wide identification and characterization of cadmium-responsive microRNAs and their target genes in radish (Raphanus sativus L.) roots. PMID:24014874
Amino acid racemization in Pseudomonas putida KT2440. PMID:23995642
Mapping the human reference genome's missing sequence by three-way admixture in Latino genomes. PMID:23932108
Increments and duplication events of enzymes and transcription factors influence metabolic and regulatory diversity in prokaryotes. PMID:23922780
New strategy for virus discovery: viruses identified in human feces in the last decade. PMID:23917840
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. PMID:23879659
Structure prediction of partial-length protein sequences. PMID:23867606
Flexible approaches for teaching computational genomics in a health information management program. PMID:23861672
In-silico analysis of caspase-3 and -7 proteases from blood-parasitic Schistosoma species (Trematoda) and their human host. PMID:23847399
JBioWH: an open-source Java framework for bioinformatics data integration. PMID:23846595
Whole cell hybridisation for monitoring harmful marine microalgae. PMID:23835584
PTree: pattern-based, stochastic search for maximum parsimony phylogenies. PMID:23825794
Revealing less derived nature of cartilaginous fish genomes with their evolutionary time scale inferred with nuclear genes. PMID:23825540
Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system. PMID:23818163
Deep sequencing discovery of novel and conserved microRNAs in wild type and a white-flesh mutant strawberry. PMID:23807373
Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis. PMID:23799973
Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna. PMID:23781100
HASP server: a database and structural visualization platform for comparative models of influenza A hemagglutinin proteins. PMID:23777206
bioNerDS: exploring bioinformatics' database and software use through literature mining. PMID:23768135
Complete Genome Sequence of Early Passaged Human Herpesvirus 6A (GS Strain) Isolated from North America. PMID:23766398
Resolving ambiguity in the phylogenetic relationship of genotypes A, B, and C of hepatitis B virus. PMID:23758960
Baculovirus VP1054 is an acquired cellular PURα, a nucleic acid-binding protein specific for GGN repeats. PMID:23720732
Genomic analysis of the native European Solanum species, S. dulcamara. PMID:23713999
From manual curation to visualization of gene families and networks across Solanaceae plant species. PMID:23681907
Sexual dimorphism floral microRNA profiling and target gene expression in andromonoecious poplar (Populus tomentosa). PMID:23667507
Comparative analysis of the peanut witches'-broom phytoplasma genome reveals horizontal transfer of potential mobile units and effectors. PMID:23626855
Explaining microbial phenotypes on a genomic scale: GWAS for microbes. PMID:23625995
High-throughput sequencing: a roadmap toward community ecology. PMID:23610649
CMG-biotools, a free workbench for basic comparative microbial genomics. PMID:23577086
Structural mimicry between SLA/LP and Rickettsia surface antigens as a driver of autoimmune hepatitis: insights from an in silico study. PMID:23575112
Horizontal transfer of a subtilisin gene from plants into an ancestor of the plant pathogenic fungal genus Colletotrichum. PMID:23554975
Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum. PMID:23445305
Using population admixture to help complete maps of the human genome. PMID:23435088
Complete Genome Sequence of Bacteriophage EC6, Capable of Lysing Escherichia coli O157:H7. PMID:23405293
Spatial variations in microbial community composition in surface seawater from the ultra-oligotrophic center to rim of the South Pacific Gyre. PMID:23405118
On the reliability of DNA sequences of Ophiocordyceps sinensis in public databases. PMID:23397071
Developmental and environmental regulation of Aquaporin gene expression across Populus species: divergence or redundancy? PMID:23393587
Phylogenetic analysis of cubilin (CUBN) gene. PMID:23390341
Base-calling algorithm with vocabulary (BCV) method for analyzing population sequencing chromatograms. PMID:23382983
A genetic polymorphism evolving in parallel in two cell compartments and in two clades. PMID:23311980
An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications. PMID:23282110
Phylogenetic reconstruction in the order Nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase k (matK) as a potential marker for DNA bar coding. PMID:23282079
Phylogenetic analysis of uroporphyrinogen III synthase (UROS) gene. PMID:23275732
Candidate RNA structures for domain 3 of the foot-and-mouth-disease virus internal ribosome entry site. PMID:23275533
Molecular serotyping of Salmonella enterica by complete rpoB gene sequencing. PMID:23274983
An integrated in silico approach to design specific inhibitors targeting human poly(a)-specific ribonuclease. PMID:23236441
Evolution of general transcription factors. PMID:23229069
A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation. PMID:23209850
The BioGRID interaction database: 2013 update. PMID:23203989
Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community. PMID:23202522
De novo origin of protein-coding genes in murine rodents. PMID:23185269
WholeCellKB: model organism databases for comprehensive whole-cell models. PMID:23175606
Genenames.org: the HGNC resources in 2013. PMID:23161694
The UCSC Genome Browser database: extensions and updates 2013. PMID:23155063
In silico biosynthesis of virenose, a methylated deoxy-sugar unique to Coxiella burnetii lipopolysaccharide. PMID:23150954
Thousands of missed genes found in bacterial genomes and their analysis with COMBREX. PMID:23111013
Complete genome sequence of the podoviral bacteriophage YMC/09/02/B1251 ABA BP, which causes the lysis of an OXA-23-producing carbapenem-resistant Acinetobacter baumannii isolate from a septic patient. PMID:23087105
Associations between maternal genotypes and metabolites implicated in congenital heart defects. PMID:23059056
Evolution of transcriptional regulation in closely related bacteria. PMID:23039862
Fungal diversity is not determined by mineral and chemical differences in serpentine substrates. PMID:23028507
Comparative genomics of CytR, an unusual member of the LacI family of transcription factors. PMID:23028500
PHYMYCO-DB: a curated database for analyses of fungal diversity and evolution. PMID:23028445
Codon usage methods for horizontal gene transfer detection generate an abundance of false positive and false negative results. PMID:23010940
Parallel Markov chain Monte Carlo - bridging the gap to high-performance Bayesian computation in animal breeding and genetics. PMID:23009363
Rapid identification of pathogens from positive blood cultures by multiplex polymerase chain reaction using the FilmArray system. PMID:22999332
Bacterial Selection during the Formation of Early-Stage Aerobic Granules in Wastewater Treatment Systems Operated Under Wash-Out Dynamics. PMID:22993513
Apomixis and reticulate evolution in the Asplenium monanthes fern complex. PMID:22984165
Online tools for bioinformatics analyses in nutrition sciences. PMID:22983844
New insights in gut microbiota establishment in healthy breast fed neonates. PMID:22957008
Development of microsatellite markers for the Korean Mussel, Mytilus coruscus (Mytilidae) using next-generation sequencing. PMID:22949881
Molybdoenzyme that catalyzes the anaerobic hydroxylation of a tertiary carbon atom in the side chain of cholesterol. PMID:22942275
Complete genome sequence of Salmonella bacteriophage SS3e. PMID:22923809
Changes in the gut microbiome of the sea lamprey during metamorphosis. PMID:22923392
HSPIR: a manually annotated heat shock protein information resource. PMID:22923302
The identification of candidate genes and SNP markers for classical bovine spongiform encephalopathy susceptibility. PMID:22918267
Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing. PMID:22912594
Identification of common carp (Cyprinus carpio) microRNAs and microRNA-related SNPs. PMID:22908890
The UCSC genome browser and associated tools. PMID:22908213
Pseudogenization of the MCP-2/CCL8 chemokine gene in European rabbit (genus Oryctolagus), but not in species of Cottontail rabbit (Sylvilagus) and Hare (Lepus). PMID:22894773
Osteopontin reduces biofilm formation in a multi-species model of dental biofilm. PMID:22879891
Complete genome sequence of bacteriophage BC-611 specifically infecting Enterococcus faecalis strain NP-10011. PMID:22879611
A novel RT-PCR method for quantification of human papillomavirus transcripts in archived tissues and its application in oropharyngeal cancer prognosis. PMID:22821242
A proposed consensus panel of organisms for determining evolutionary conservation of mt-tRNA point mutations. PMID:22781547
Complete genomic sequence of Salmonella enterica serovar Enteritidis phage SE2. PMID:22733878
VoSeq: a voucher and DNA sequence web application. PMID:22720030
Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities. PMID:22719831
Detecting mutually exclusive interactions in protein-protein interaction maps. PMID:22715412
A Phylogenetic analysis of Heparanase (HPSE) gene. PMID:22715311
A modular assembly cloning technique (aided by the BIOF software tool) for seamless and error-free assembly of long DNA fragments. PMID:22709633
Constrained de novo sequencing of conotoxins. PMID:22709442
High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)). PMID:22675588
Identification of functional differences in metabolic networks using comparative genomics and constraint-based models. PMID:22666308
Application of next-generation sequencing technologies in virology. PMID:22647373
Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass. PMID:22636774
Comparing thousands of circular genomes using the CGView Comparison Tool. PMID:22621371
Bacteriophages with the ability to degrade uropathogenic Escherichia coli biofilms. PMID:22590682
Use of the University of Minnesota Biocatalysis/Biodegradation Database for study of microbial degradation. PMID:22587916
Promoter sequences prediction using relational association rule mining. PMID:22563233
Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes. PMID:22554235
Systematic analysis of metallo-β-lactamases using an automated database. PMID:22547615
Quantitative proteomic analysis of HIV-1 infected CD4+ T cells reveals an early host response in important biological pathways: protein synthesis, cell proliferation, and T-cell activation. PMID:22542004
GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity Database. PMID:22536971
Tachyon search speeds up retrieval of similar sequences by several orders of magnitude. PMID:22531216
Plant rDNA database: ribosomal DNA loci information goes online. PMID:22527113
Structural changes caused by radiation-induced reduction and radiolysis: the effect of X-ray absorbed dose in a fungal multicopper oxidase. PMID:22525754
Molecular taxonomy of Dunaliella (Chlorophyceae), with a special focus on D. salina: ITS2 sequences revisited with an extensive geographical sampling. PMID:22520929
Discovery and profiling of novel and conserved microRNAs during flower development in Carya cathayensis via deep sequencing. PMID:22481137
Diverse forms of RPS9 splicing are part of an evolving autoregulatory circuit. PMID:22479208
Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. PMID:22476438
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events. PMID:22467916
Discovery of defense- and neuropeptides in social ants by genome-mining. PMID:22448224
Aptamer Base: a collaborative knowledge base to describe aptamers and SELEX experiments. PMID:22434840
The ITS2 Database. PMID:22433429
Grapevine aquaporins: gating of a tonoplast intrinsic protein (TIP2;1) by cytosolic pH. PMID:22427995
Genomic variation in Salmonella enterica core genes for epidemiological typing. PMID:22409488
Identification and characterization of a bacterial hydrosulphide ion channel. PMID:22407320
Identification of ubiquitin-specific protease 9X (USP9X) as a deubiquitinase acting on ubiquitin-peroxin 5 (PEX5) thioester conjugate. PMID:22371489
Structural view of a non Pfam singleton and crystal packing analysis. PMID:22363703
Complete genome sequence of Pseudomonas aeruginosa lytic bacteriophage PA1O which resembles temperate bacteriophage D3112. PMID:22354942
Flavonoid-mediated inhibition of SARS coronavirus 3C-like protease expressed in Pichia pastoris. PMID:22350287
Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal. PMID:22323219
Abundance and distribution of the highly iterated palindrome 1 (HIP1) among prokaryotes. PMID:22312590
Quantification of human fecal bifidobacterium species by use of quantitative real-time PCR analysis targeting the groEL gene. PMID:22307308
Gene alterations at Drosophila inversion breakpoints provide prima facie evidence for natural selection as an explanation for rapid chromosomal evolution. PMID:22296923
Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. PMID:22272658
SAFE Software and FED Database to Uncover Protein-Protein Interactions using Gene Fusion Analysis. PMID:22267904
IntegromeDB: an integrated system and biological search engine. PMID:22260095
Region specific and worldwide distribution of collagen-binding M proteins with PARF motifs among human pathogenic streptococcal isolates. PMID:22253902
Interspecific sex in grass smuts and the genetic diversity of their pheromone-receptor system. PMID:22242007
A vector space model approach to identify genetically related diseases. PMID:22227640
Diversity, mobility, and structural and functional evolution of group II introns carrying an unusual 3' extension. PMID:22204608
Solving the Problem: Genome Annotation Standards before the Data Deluge. PMID:22180819
A suite of citrate-derived siderophores from a marine Vibrio species isolated following the Deepwater Horizon oil spill. PMID:22178670
Identifying hosts of families of viruses: a machine learning approach. PMID:22174744
Asynchronous origins of ectomycorrhizal clades of Agaricales. PMID:22171078
Functional bias of positively selected genes in Streptococcus genomes. PMID:22155358
amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions. PMID:22141924
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. PMID:22139929
MetaBase--the wiki-database of biological databases. PMID:22139927
BacMap: an up-to-date electronic atlas of annotated bacterial genomes. PMID:22135301
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. PMID:22135293
Dr.VIS: a database of human disease-related viral integration sites. PMID:22135288
TDR Targets: a chemogenomics resource for neglected diseases. PMID:22116064
GeneDB--an annotation database for pathogens. PMID:22116062
DAMPD: a manually curated antimicrobial peptide database. PMID:22110032
DNAtraffic--a new database for systems biology of DNA dynamics during the cell life. PMID:22110027
Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering. PMID:22102569
Genome-wide profiling of novel and conserved Populus microRNAs involved in pathogen stress response by deep sequencing. PMID:22101925
Evolution and connectivity in the world-wide migration system of the mallard: inferences from mitochondrial DNA. PMID:22093799
Essential C-terminal region of the baculovirus minor capsid protein VP80 binds DNA. PMID:22090126
Characterization of non-specific cytotoxic cell receptor protein 1: a new member of the lectin-type subfamily of F-box proteins. PMID:22087255
The UCSC Genome Browser database: extensions and updates 2011. PMID:22086951
CADRE: the Central Aspergillus Data REpository 2012. PMID:22080563
The UCSC Archaeal Genome Browser: 2012 update. PMID:22080555
Major submissions tool developments at the European Nucleotide Archive. PMID:22080548
ENCODE whole-genome data in the UCSC Genome Browser: update 2012. PMID:22075998
Inference of functional properties from large-scale analysis of enzyme superfamilies. PMID:22069325
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. PMID:22067448
ConoServer: updated content, knowledge, and discovery tools in the conopeptide database. PMID:22058133
959 Nematode Genomes: a semantic wiki for coordinating sequencing projects. PMID:22058131
The Histone Database: an integrated resource for histones and histone fold-containing proteins. PMID:22025671
Morphological and molecular evolution are not linked in Lamellodiscus (Plathyhelminthes, Monogenea). PMID:22022582
MicroRNA-31 regulated by the extracellular regulated kinase is involved in vascular smooth muscle cell growth via large tumor suppressor homolog 2. PMID:22020941
Genome shrinkage and loss of nutrient-providing potential in the obligate symbiont of the primitive termite Mastotermes darwiniensis. PMID:22020505
Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants. PMID:22016070
Tuf gene sequence analysis has greater discriminatory power than 16S rRNA sequence analysis in identification of clinical isolates of coagulase-negative staphylococci. PMID:21998419
CAMBer: an approach to support comparative analysis of multiple bacterial strains. PMID:21989220
The UCSC Genome Browser. PMID:21975940
Phenotypic diversity caused by differential RpoS activity among environmental Escherichia coli isolates. PMID:21948830
An inserted α/β subdomain shapes the catalytic pocket of Lactobacillus johnsonii cinnamoyl esterase. PMID:21876742
Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation. PMID:21872475
Genetic analysis of phage Mu Mor protein amino acids involved in DNA minor groove binding and conformational changes. PMID:21859715
Phylogenetic and experimental characterization of an acyl-ACP thioesterase family reveals significant diversity in enzymatic specificity and activity. PMID:21831316
Context-based FISH localization of genomic rearrangements within chromosome 15q11.2q13 duplicons. PMID:21824424
Sequence-structural features and evolutionary relationships of family GH57 α-amylases and their putative α-amylase-like homologues. PMID:21786160
Characterization of two distinct glycosyl hydrolase family 78 alpha-L-rhamnosidases from Pediococcus acidilactici. PMID:21784921
Improving pan-genome annotation using whole genome multiple alignment. PMID:21718539
Spectral archives: a vision for future proteomics data repositories. PMID:21716282
GCView: the genomic context viewer for protein homology searches. PMID:21609955
Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge. PMID:21595926
Expression and β-glucan binding properties of Scots pine (Pinus sylvestris L.) antimicrobial protein (Sp-AMP). PMID:21584858
Topological variation in the evolution of new reactions in functionally diverse enzyme superfamilies. PMID:21458983
The properties and applications of single-molecule DNA sequencing. PMID:21349208
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655 -
GenBank
PubMed citations: 198.
198 articles citing: GenBank
Identification and integrated analysis of lncRNAs and miRNAs in IPEC-J2 cells provide novel insight into the regulation of the innate immune response by PDCoV infection. PMID:35787252
CMash: fast, multi-resolution estimation of k-mer-based Jaccard and containment indices. PMID:35758788
Target capture sequencing reveals a monoclonal outbreak of respiratory syncytial virus B infections among adult hematologic patients. PMID:35729671
Comparative Analysis of the Chloroplast Genomes of Quercus × morehus and the Presumptive Parents Q. wislizeni and Q. kelloggii (Fagaceae) from California. PMID:35695497
Pan-cancer analyses reveal the genetic and pharmacogenomic landscape of transient receptor potential channels. PMID:35614079
T-G-A Deficiency Pattern in Protein-Coding Genes and Its Potential Reason. PMID:35602045
Six New Species of Tomentella (Thelephorales, Basidiomycota) From Tropical Pine Forests in Central Vietnam. PMID:35547107
Morphological and molecular characterization of a new autochthonous Trichoderma sp. isolate and its biocontrol efficacy against Alternaria sp. PMID:35531149
First two mitochondrial genomes for the order Filobasidiales reveal novel gene rearrangements and intron dynamics of Tremellomycetes. PMID:35501936
Urban Wildlife Crisis: Australian Silver Gull Is a Bystander Host to Widespread Clinical Antibiotic Resistance. PMID:35469421
Comparing protein-protein interaction networks of SARS-CoV-2 and (H1N1) influenza using topological features. PMID:35393450
The Microbiome in Osteoarthritis: a Narrative Review of Recent Human and Animal Model Literature. PMID:35389162
Next-generation sequencing: insights to advance clinical investigations of the microbiome. PMID:35362479
Expanding the Universe of Hemoplasmas: Multi-Locus Sequencing Reveals Putative Novel Hemoplasmas in Lowland Tapirs (Tapirus terrestris), the Largest Land Mammals in Brazil. PMID:35336189
Comparative Genome Analysis of 'Candidatus Phytoplasma luffae' Reveals the Influential Roles of Potential Mobile Units in Phytoplasma Evolution. PMID:35300489
Changes in the Mitochondrial Dynamics and Functions Together with the mRNA/miRNA Network in the Heart Tissue Contribute to Hypoxia Adaptation in Tibetan Sheep. PMID:35268153
Complete Chloroplast Genome of Topotype Material of the Coast Live Oak Quercus agrifolia Née var. agrifolia (Fagaceae) from California. PMID:35254126
Chromosome-scale Echinococcus granulosus (genotype G1) genome reveals the Eg95 gene family and conservation of the EG95-vaccine molecule. PMID:35241789
The Value of Whole-Genome Sequencing for Mitochondrial DNA Population Studies: Strategies and Criteria for Extracting High-Quality Mitogenome Haplotypes. PMID:35216360
Phosphate Solubilizing Microorganism Bacillus sp. MVY-004 and Its Significance for Biomineral Fertilizers' Development in Agrobiotechnology. PMID:35205120
Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential. PMID:35049133
Modular evolution of secretion systems and virulence plasmids in a bacterial species complex. PMID:35022048
On six African species of Lyomyces and Xylodon. PMID:35005580
RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse. PMID:34876495
piRBase: integrating piRNA annotation in all aspects. PMID:34871445
Genetic Diversity and Characteristics of bla NDM-Positive Plasmids in Escherichia coli. PMID:34867846
Accelerating Complete Phytoplasma Genome Assembly by Immunoprecipitation-Based Enrichment and MinION-Based DNA Sequencing for Comparative Analyses. PMID:34858377
The evolution of cheating in viruses. PMID:34836945
First report of mitochondrial COI in foraminifera and implications for DNA barcoding. PMID:34772985
RESCRIPt: Reproducible sequence taxonomy reference database management. PMID:34748542
Combination of Pseudo-LC-NMR and HRMS/MS-Based Molecular Networking for the Rapid Identification of Antimicrobial Metabolites From Fusarium petroliphilum. PMID:34746230
Occurrence of south- and north-seeking multicellular magnetotactic prokaryotes in a coastal lagoon in the South Hemisphere. PMID:34738176
Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. PMID:34677568
Mitochondrial genomes of five Hyphessobrycon tetras and their phylogenetic implications. PMID:34594536
Molecular Acquisition, Cleaning and Evaluation in R (MACER) - A tool to assemble molecular marker datasets from BOLD and GenBank. PMID:34594153
PAM-repeat associations and spacer selection preferences in single and co-occurring CRISPR-Cas systems. PMID:34593010
Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas. PMID:34588691
In Silico Analysis of Fungal and Chloride-Dependent α-Amylases within the Family GH13 with Identification of Possible Secondary Surface-Binding Sites. PMID:34577174
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions. PMID:34549988
DNA-based taxonomy of a mangrove-associated community of fishes in Southeast Asia. PMID:34493747
Molecular Epidemiology and Characterization of Picobirnavirus in Wild Deer and Cattle from Australia: Evidence of Genogroup I and II in the Upper Respiratory Tract. PMID:34452357
Development of two loop-mediated isothermal amplification (LAMP) genomics-informed diagnostic protocols for rapid detection of Pantoea species on rice. PMID:34434739
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes. PMID:34417604
Study of the Langat virus RNA-dependent RNA polymerase through homology modeling. PMID:34316455
Evolution of Toll, Spatzle and MyD88 in insects: the problem of the Diptera bias. PMID:34289811
In Silico Identification and Functional Characterization of Conserved miRNAs in the Genome of Cryptosporidium parvum. PMID:34262265
Ancient Gene Capture and Recent Gene Loss Shape the Evolution of Orthopoxvirus-Host Interaction Genes. PMID:34253028
Wide Distribution and Specific Resistance Pattern to Third-Generation Cephalosporins of Enterobacter cloacae Complex Members in Humans and in the Environment in Guadeloupe (French West Indies). PMID:34248862
Cattle connection: molecular epidemiology of BVDV outbreaks via rapid nanopore whole-genome sequencing of clinical samples. PMID:34247601
EvoProDom: evolutionary modeling of protein families by assessing translocations of protein domains. PMID:34196123
Landscape and selection of vaccine epitopes in SARS-CoV-2. PMID:34127050
GUNC: detection of chimerism and contamination in prokaryotic genomes. PMID:34120611
Deep Sequencing of Small RNA Reveals the Molecular Regulatory Network of AtENO2 Regulating Seed Germination. PMID:34065034
Endophytic Bacterial Isolates From Halophytes Demonstrate Phytopathogen Biocontrol and Plant Growth Promotion Under High Salinity. PMID:34017321
PhyloPrimer: a taxon-specific oligonucleotide design platform. PMID:33986979
A putative novel starch-binding domain revealed by in silico analysis of the N-terminal domain in bacterial amylomaltases from the family GH77. PMID:33968573
Weed-infecting viruses in a tropical agroecosystem present different threats to crops and evolutionary histories. PMID:33909644
A novel fragmented mitochondrial genome in the protist pathogen Toxoplasma gondii and related tissue coccidia. PMID:33906963
iBLAST: Incremental BLAST of new sequences via automated e-value correction. PMID:33886589
Reproduction of East-African bats may guide risk mitigation for coronavirus spillover. PMID:33824945
isa4j: a scalable Java library for creating ISA-Tab metadata. PMID:33728038
Catalase impairs Leishmania mexicana development and virulence. PMID:33724149
Unification and extensive diversification of M/Orf3-related ion channel proteins in coronaviruses and other nidoviruses. PMID:33692906
The Species Identification in Traditional Herbal Patent Medicine, Wuhu San, Based on Shotgun Metabarcoding. PMID:33664667
KIR2DL4 genetic diversity in a Brazilian population sample: implications for transcription regulation and protein diversity in samples with different ancestry backgrounds. PMID:33595694
SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences. PMID:33507271
CE16 acetylesterases: in silico analysis, catalytic machinery prediction and comparison with related SGNH hydrolases. PMID:33505839
Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequences. PMID:33505425
One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads. PMID:33503026
Comprehensive in vivo secondary structure of the SARS-CoV-2 genome reveals novel regulatory motifs and mechanisms. PMID:33444546
Functional refolding of the penetration protein on a non-enveloped virus. PMID:33442061
Intra- and Inter-Host Assessment of Bartonella Diversity with Focus on Non-Hematophagous Bats and Associated Ectoparasites from Brazil. PMID:33227996
Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. PMID:33219685
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801
Platinum-Quality Mitogenome Haplotypes from United States Populations. PMID:33138247
An Earliest Endosymbiont, Wolbachia massiliensis sp. nov., Strain PL13 from the Bed Bug (Cimex hemipterus), Type Strain of a New Supergroup T. PMID:33138055
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes. PMID:33125315
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. PMID:33119741
PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs. PMID:33079992
Fruit host-dependent fungal communities in the microbiome of wild Queensland fruit fly larvae. PMID:33024226
Continental-scale metagenomics, BLAST searches, and herbarium specimens: The Australian Microbiome Initiative and the National Herbarium of Victoria. PMID:33014636
Application of whole genome sequencing to query a potential outbreak of Elizabethkingia anophelis in Ontario, Canada. PMID:32974512
Design principles of gene evolution for niche adaptation through changes in protein-protein interaction networks. PMID:32973219
Extension of the taxonomic coverage of the family GH126 outside Firmicutes and in silico characterization of its non-catalytic terminal domains. PMID:32953382
Unlocking COVID therapeutic targets: A structure-based rationale against SARS-CoV-2, SARS-CoV and MERS-CoV Spike. PMID:32913581
Applied Barcoding: The Practicalities of DNA Testing for Herbals. PMID:32899738
Communities of Fungi in Black Cherry Stumps and Effects of Herbicide. PMID:32878134
Complete Genome Sequence of "Candidatus Phytoplasma asteris" RP166, a Plant Pathogen Associated with Rapeseed Phyllody Disease in Poland. PMID:32855252
Going back to the roots: Evaluating Bayesian phylogeographic models with discrete trait uncertainty. PMID:32798768
Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration. PMID:32791514
Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. PMID:32760545
Species Boundaries and Molecular Markers for the Classification of 16SrI Phytoplasmas Inferred by Genome Analysis. PMID:32754131
Thinning Partially Mitigates the Impact of Atlantic Forest Replacement by Pine Monocultures on the Soil Microbiome. PMID:32719665
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. PMID:32683454
Comprehensive in-vivo secondary structure of the SARS-CoV-2 genome reveals novel regulatory motifs and mechanisms. PMID:32676598
Hygrophorus subsection Hygrophorus (Hygrophoraceae, Agaricales) in China. PMID:32675938
ganon: precise metagenomics classification against large and up-to-date sets of reference sequences. PMID:32657362
Metachromatic leukodystrophy genotypes in The Netherlands reveal novel pathogenic ARSA variants in non-Caucasian patients. PMID:32632536
Sars-CoV-2 Envelope and Membrane Proteins: Structural Differences Linked to Virus Characteristics? PMID:32596311
Diverse and unique viruses discovered in the surface water of the East China Sea. PMID:32590932
Characterization of the Phenanthrene-Degrading Sphingobium yanoikuyae SJTF8 in Heavy Metal Co-Existing Liquid Medium and Analysis of Its Metabolic Pathway. PMID:32586023
Landscape and Selection of Vaccine Epitopes in SARS-CoV-2. PMID:32577654
Scalable Pairwise Whole-Genome Homology Mapping of Long Genomes with BubbZ. PMID:32563153
Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence. PMID:32528034
Shotgun sequencing of honey DNA can describe honey bee derived environmental signatures and the honey bee hologenome complexity. PMID:32518251
Global distribution of a chlorophyll f cyanobacterial marker. PMID:32457503
Biochemical Characteristics and a Genome-Scale Metabolic Model of an Indian Euryhaline Cyanobacterium with High Polyglucan Content. PMID:32365713
Catalase and Ascorbate Peroxidase in Euglenozoan Protists. PMID:32344595
Genome-Wide Identification and Characterization of Drought Stress Responsive microRNAs in Tibetan Wild Barley. PMID:32316632
Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics. PMID:32265950
MetaEuk-sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics. PMID:32245390
Single-Nucleotide Polymorphism-Based Genetic Diversity Analysis of Clinical Pseudomonas aeruginosa Isolates. PMID:32196089
Safety Considerations for Malaria Volunteer Infection Studies: A Mini-Review. PMID:32189610
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes. PMID:32161947
On the complementarity of DNA barcoding and morphology to distinguish benign endemic insects from possible pests: the case of Dirioxa pornia and the tribe Acanthonevrini (Diptera: Tephritidae: Phytalmiinae) in Australia. PMID:32096585
Comparative Genomic Analysis of a Novel Strain of Taiwan Hot-Spring Cyanobacterium Thermosynechococcus sp. CL-1. PMID:32082292
The genus Catathelasma (Catathelasmataceae, Basidiomycota) in China. PMID:32076385
Contents, Construction Methods, Data Resources, and Functions Comparative Analysis of Bacteria Databases. PMID:32071553
Exploration of databases and methods supporting drug repurposing: a comprehensive survey. PMID:32055842
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data. PMID:32053657
Structure of the prefusion-locking broadly neutralizing antibody RVC20 bound to the rabies virus glycoprotein. PMID:32001700
Genomic Analysis of Wolbachia from Laodelphax striatellus (Delphacidae, Hemiptera) Reveals Insights into Its "Jekyll and Hyde" Mode of Infection Pattern. PMID:31958110
Diffuse capillary malformation with overgrowth contains somatic PIK3CA variants. PMID:31909475
Characterizing the ribosomal tandem repeat and its utility as a DNA barcode in lichen-forming fungi. PMID:31906844
LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation. PMID:31888452
From marine park to future genomic observatory? Enhancing marine biodiversity assessments using a biocode approach. PMID:31866739
Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum. PMID:31861401
The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia. PMID:31844092
The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases. PMID:31796553
A recombinase polymerase amplification-lateral flow dipstick assay for rapid detection of the quarantine citrus pathogen in China, Phytophthora hibernalis. PMID:31763074
Swordfish or Shark Slice? A Rapid Response by COIBar-RFLP. PMID:31683903
In silico Screening and Heterologous Expression of a Polyethylene Terephthalate Hydrolase (PETase)-Like Enzyme (SM14est) With Polycaprolactone (PCL)-Degrading Activity, From the Marine Sponge-Derived Strain Streptomyces sp. SM14. PMID:31632361
Genomic Characterization of the Periwinkle Leaf Yellowing (PLY) Phytoplasmas in Taiwan. PMID:31608032
Genome-wide Identification and Characterization of a Superfamily of Bacterial Extracellular Contractile Injection Systems. PMID:31597107
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases. PMID:31584084
Genome Mining Coupled with OSMAC-Based Cultivation Reveal Differential Production of Surugamide A by the Marine Sponge Isolate Streptomyces sp. SM17 When Compared to Its Terrestrial Relative S. albidoflavus J1074. PMID:31561472
Ice Nucleation Properties of Ice-binding Proteins from Snow Fleas. PMID:31557956
Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. PMID:31510914
Comparative Evaluation of a Novel Recombinase Polymerase Amplification-Lateral Flow Dipstick (RPA-LFD) Assay, LAMP, Conventional PCR, and Leaf-Disc Baiting Methods for Detection of Phytophthora sojae. PMID:31447827
The genome of Ensifer alkalisoli YIC4027 provides insights for host specificity and environmental adaptations. PMID:31405380
Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters. PMID:31405375
Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential. PMID:31404169
In Silico Phylogenetic and Structural Analyses of Plant Endogenous Danger Signaling Molecules upon Stress. PMID:31396307
Weighted Fused Pathway Graphical Lasso for Joint Estimation of Multiple Gene Networks. PMID:31396259
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance. PMID:31363753
Differentiations in Gene Content and Expression Response to Virulence Induction Between Two Agrobacterium Strains. PMID:31354658
Influenza passaging annotations: what they tell us and why we should listen. PMID:31275610
Assessment of BOLD and GenBank - Their accuracy and reliability for the identification of biological materials. PMID:31216285
Cyberbiosecurity Challenges of Pathogen Genome Databases. PMID:31157218
Four new East Asian species of Aleurodiscus with echinulate basidiospores. PMID:31139010
DiVenn: An Interactive and Integrated Web-Based Visualization Tool for Comparing Gene Lists. PMID:31130993
β-Aminopeptidases: Insight into Enzymes without a Known Natural Substrate. PMID:31126950
Contraction of the ROS Scavenging Enzyme Glutathione S-Transferase Gene Family in Cetaceans. PMID:31092607
Oxidative opening of the aromatic ring: Tracing the natural history of a large superfamily of dioxygenase domains and their relatives. PMID:31092555
In silico Approach for Unveiling the Glycoside Hydrolase Activities in Faecalibacterium prausnitzii Through a Systematic and Integrative Large-Scale Analysis. PMID:31024464
Complete Genome Sequence of Spiroplasma alleghenense PLHS-1T (ATCC 51752), a Bacterium Isolated from Scorpion Fly (Panorpa helena). PMID:31023800
Prunus genetics and applications after de novo genome sequencing: achievements and prospects. PMID:30962943
OsNAC-like transcription factor involved in regulating seed-storage protein content at different stages of grain filling in rice under aerobic conditions. PMID:30945674
Development of Phytomonas lipae sp. n. (Kinetoplastea: Trypanosomatidae) in the true bug Coreus marginatus (Heteroptera: Coreidae) and insights into the evolution of life cycles in the genus Phytomonas. PMID:30943229
Four new corticioid species in Trechisporales (Basidiomycota) from East Asia and notes on phylogeny of the order. PMID:30930653
Phylogenetic and morphological studies in Xylodon (Hymenochaetales, Basidiomycota) with the addition of four new species. PMID:30858753
The Pathogenic Neisseria Use a Streamlined Set of Peptidoglycan Degradation Proteins for Peptidoglycan Remodeling, Recycling, and Toxic Fragment Release. PMID:30766523
The plastid and mitochondrial genomes of Eucalyptus grandis. PMID:30760198
Transcriptomic Analysis of the Spider Venom Gland Reveals Venom Diversity and Species Consanguinity. PMID:30682870
Gypsy moth genome provides insights into flight capability and virus-host interactions. PMID:30642971
Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species Levels. PMID:30631317
EMBL2checklists: A Python package to facilitate the user-friendly submission of plant and fungal DNA barcoding sequences to ENA. PMID:30629718
Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences. PMID:30535314
Genetic assessment of a bighorn sheep population expansion in the Silver Bell Mountains, Arizona. PMID:30533296
Origins and Evolution of the Global RNA Virome. PMID:30482837
Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq. PMID:30479362
Characterization and Genomic Analyses of Pseudomonas aeruginosa Podovirus TC6: Establishment of Genus Pa11virus. PMID:30410478
Database resources of the National Center for Biotechnology Information. PMID:30395293
The European Nucleotide Archive in 2018. PMID:30395270
Additions to the taxonomy of Lagarobasidium and Xylodon (Hymenochaetales, Basidiomycota). PMID:30386167
GenBank. PMID:30365038
Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human. PMID:30357418
DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data. PMID:30357349
Taxonomy and phylogeny of Dichostereum (Russulales), with descriptions of three new species from southern China. PMID:30344439
Differential Usefulness of Nine Commonly Used Genetic Markers for Identifying Phytophthora Species. PMID:30337915
Growing and cultivating the forest genomics database, TreeGenes. PMID:30239664
Insights into the life strategy of the common marine diatom Chaetoceros peruvianus Brightwell. PMID:30208090
Attack of the clones: whole genome-based characterization of two closely related enterohemorrhagic Escherichia coli O26 epidemic lineages. PMID:30170539
The scale-free nature of protein sequence space. PMID:30067815
ChemDIS 2: an update of chemical-disease inference system. PMID:30053236
Comparative genomic analysis of eutherian adiponectin genes. PMID:30003153
In silico analysis of the α-amylase family GH57: eventual subfamilies reflecting enzyme specificities. PMID:29998051
Horizontal transfer of BovB and L1 retrotransposons in eukaryotes. PMID:29983116
Viral Entry Properties Required for Fitness in Humans Are Lost through Rapid Genomic Change during Viral Isolation. PMID:29970463
Plasmids of Psychrotolerant Polaromonas spp. Isolated From Arctic and Antarctic Glaciers - Diversity and Role in Adaptation to Polar Environments. PMID:29967598
Escherichia coli ItaT is a type II toxin that inhibits translation by acetylating isoleucyl-tRNAIle. PMID:29931259
MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis. PMID:29927748
Biological meaning of "habitable zone" in nucleotide composition space. PMID:29892513
In silico Phylogenetic Analysis of hAT Transposable Elements in Plants. PMID:29882803
No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects. PMID:29806194
The NCBI BioCollections Database. PMID:29688360
A hybrid reference-guided de novo assembly approach for generating Cyclospora mitochondrion genomes. PMID:29643938
ProtaBank: A repository for protein design and engineering data. PMID:29575358 -
GenBank
PubMed citations: 197.
197 articles citing: GenBank
Four new Parasterope (Ostracoda, Myodocopina) from the Northwest Pacific and their phylogeny based on 16S rRNA. PMID:35836690
Basecalling Using Joint Raw and Event Nanopore Data Sequence-to-Sequence Processing. PMID:35336445
Whole-genome analysis of SARS-CoV-2 in a 2020 infection cluster in a nursing home of Southern Italy. PMID:35189404
Navigating Multi-Scale Cancer Systems Biology Towards Model-Driven Clinical Oncology and Its Applications in Personalized Therapeutics. PMID:34900668
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity. PMID:34894225
Analysis of MYO1H Gene Polymorphism in Skeletal Class-III Malocclusion Due to Mandibular Prognathism. PMID:34877573
Hepatitis B virus genotypes prevalence in patients from hepatology services in Ceará, Brazil. PMID:34495262
NGS Techniques Reveal a High Diversity of RNA Viral Pathogens and Papillomaviruses in Fresh Produce and Irrigation Water. PMID:34441597
Expanding the Search for Sperm Transmission Elements in the Mitochondrial Genomes of Bivalve Mollusks. PMID:34440385
Rapid, inexpensive methods for exploring SARS CoV-2 D614G mutation. PMID:34307051
Sporadic isolation of Tetratrichomonas species from the cattle urogenital tract. PMID:34078489
Knl1 participates in spindle assembly checkpoint signaling in maize. PMID:33990465
Molecular Characterization of Bacteria, Detection of Enterotoxin Genes, and Screening of Antibiotic Susceptibility Patterns in Traditionally Processed Meat Products of Sikkim, India. PMID:33505372
Complete mitochondrial genome of Cacospongia mycofijiensis (Dictyoceratida: Demospongiae): the first report for the sponge family Thorectidae. PMID:33473527
Unveiling Viruses Associated with Gastroenteritis Using a Metagenomics Approach. PMID:33322135
Prediction of Burkholderia pseudomallei DsbA substrates identifies potential virulence factors and vaccine targets. PMID:33216758
Whole Genome In-Silico Analysis of South African G1P[8] Rotavirus Strains Before and After Vaccine Introduction Over A Period of 14 Years. PMID:33066615
Molecular Insights into Bacteriophage Evolution toward Its Host. PMID:33036277
High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite. PMID:33001992
GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure. PMID:32972363
Early evolutionary loss of the lipid A modifying enzyme PagP resulting in innate immune evasion in Yersinia pestis. PMID:32868431
A novel riboswitch classification based on imbalanced sequences achieved by machine learning. PMID:32687488
Clostridium massiliamazoniense sp. nov., New Bacterial Species Isolated from Stool Sample of a Volunteer Brazilian. PMID:32613254
Molecular Study of Cysticercus Tenuicollis from Slaughtered Sheep in Sulaymaniyah Province, Iraq. PMID:32587915
HDVdb: A Comprehensive Hepatitis D Virus Database. PMID:32422927
DNA Fingerprinting and Species Identification Uncovers the Genetic Diversity of Katsouni Pea in the Greek Islands Amorgos and Schinoussa. PMID:32283704
Genomic Signature of Shifts in Selection in a Subalpine Ant and Its Physiological Adaptations. PMID:32181804
Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes. PMID:32142116
Metabolic Analyses of Nitrogen Fixation in the Soybean Microsymbiont Sinorhizobium fredii Using Constraint-Based Modeling. PMID:32071157
Bioassay- and metabolomics-guided screening of bioactive soil actinomycetes from the ancient city of Ihnasia, Egypt. PMID:31887193
Igh locus structure and evolution in Platyrrhines: new insights from a genomic perspective. PMID:31838542
EpiExploreR: A Shiny Web Application for the Analysis of Animal Disease Data. PMID:31835769
Rhizosphere Metagenomics of Paspalum scrobiculatum L. (Kodo Millet) Reveals Rhizobiome Multifunctionalities. PMID:31771141
Isolation and genetic characterization of virulent strains of avian paramyxovirus-1 from multiple avian species in Azad Jammu and Kashmir 2017-2018. PMID:31768926
Draft Genome Sequence of Dicyma pulvinata Strain 414-3, a Mycoparasite of Cladosporium fulvum, Causal Agent of Tomato Leaf Mold. PMID:31467096
Isolation, Characterization and Biotechnological Potentials of Thraustochytrids from Icelandic Waters. PMID:31370264
iProEP: A Computational Predictor for Predicting Promoter. PMID:31299595
The PSIPRED Protein Analysis Workbench: 20 years on. PMID:31251384
Disentangling Leucocytozoon parasite diversity in the neotropics: Descriptions of two new species and shortcomings of molecular diagnostics for leucocytozoids. PMID:31193389
Microbial succession on decomposing root litter in a drought-prone Scots pine forest. PMID:31123321
Use of genome-scale models to get new insights into the marine actinomycete genus Salinispora. PMID:30665399
Feasibility of a quantitative polymerase chain reaction assay for diagnosing pneumococcal pneumonia using oropharyngeal swabs. PMID:30569391
Callitetrarhynchus gracilis (Rudolphi, 1819) Pintner, 1931 (Cestoda: Trypanorhyncha) parasitizing the musculature of Sardinella brasiliensis (Steindachner, 1879) (Actinopterygii) off the coast of the state of Rio de Janeiro, Brazil. PMID:30427883
LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse. PMID:30380072
Analysis of the Trichuris suis excretory/secretory proteins as a function of life cycle stage and their immunomodulatory properties. PMID:30374177
Direct Utilization of Organic Nitrogen by Phytoplankton and Its Role in Nitrogen Cycling Within the Southern California Bight. PMID:30271389
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. PMID:30166985
Ammonia oxidizers in the sea-surface microlayer of a coastal marine inlet. PMID:30125317
Correlations between SIRT1 gene polymorphisms and diabetic kidney disease. PMID:30110438
Selection analyses of paired HIV-1 gag and gp41 sequences obtained before and after antiretroviral therapy. PMID:30040081
Metatranscriptome Analysis Deciphers Multifunctional Genes and Enzymes Linked With the Degradation of Aromatic Compounds and Pesticides in the Wheat Rhizosphere. PMID:30034370
In Silico Screening of Isocitrate Lyase for Novel Anti-Buruli Ulcer Natural Products Originating from Africa. PMID:29954088
A Web Geographic Information System to share data and explorative analysis tools: The application to West Nile disease in the Mediterranean basin. PMID:29949583
Removing contaminants from databases of draft genomes. PMID:29939994
Laboratory confirmation of Buruli ulcer cases in Ghana, 2008-2016. PMID:29870529
Isolation and Identification of an Anthracimycin Analogue from Nocardiopsis kunsanensis, a Halophile from a Saltern, by Genomic Mining Strategy. PMID:29805716
Production of Pectinase from Bacillus sonorensis MPTD1. PMID:29796004
Peptoniphilus lacydonensis sp. nov., a new human-associated species isolated from a patient with chronic refractory sinusitis. PMID:29707211
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. PMID:29688351
Genome sequence and description of Gracilibacillus timonensis sp. nov. strain Marseille-P2481T , a moderate halophilic bacterium isolated from the human gut microflora. PMID:29675845
Complete Genome Sequence of Agrobacterium tumefaciens 1D1609. PMID:29674541
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. PMID:29657133
Genome rearrangements and phylogeny reconstruction in Yersinia pestis. PMID:29607260
An outbreak of Leishmania major from an endemic to a non-endemic region posed a public health threat in Iraq from 2014-2017: Epidemiological, molecular and phylogenetic studies. PMID:29494612
A Prominent Role of the Human Cytomegalovirus UL8 Glycoprotein in Restraining Proinflammatory Cytokine Production by Myeloid Cells at Late Times during Infection. PMID:29467314
The unique evolution of the carbohydrate-binding module CBM20 in laforin. PMID:29389008
The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003. PMID:29225728
AllerBase: a comprehensive allergen knowledgebase. PMID:29220458
Living Organisms Author Their Read-Write Genomes in Evolution. PMID:29211049
Genome sequence of "Leucobacter massiliensis" sp. nov. isolated from human pharynx after travel to the 2014 Hajj. PMID:29204283
First identification of L. major in a dog in an endemic area of human cutaneous leishmaniasis in Iraq: molecular and phylogenetic studies. PMID:29197952
Horizontal Acquisition and Transcriptional Integration of Novel Genes in Mosquito-Associated Spiroplasma. PMID:29177479
Comparative Genomics Reveals Specific Genetic Architectures in Nicotine Metabolism of Pseudomonas sp. JY-Q. PMID:29163390
Vaccinomics Approach for Designing Potential Peptide Vaccine by Targeting Shigella spp. Serine Protease Autotransporter Subfamily Protein SigA. PMID:29082265
Complete mitochondrial genome sequences of the northern spotted owl (Strix occidentalis caurina) and the barred owl (Strix varia; Aves: Strigiformes: Strigidae) confirm the presence of a duplicated control region. PMID:29038757
Assessing effects of the entomopathogenic fungus Metarhizium brunneum on soil microbial communities in Agriotes spp. biological pest control. PMID:28961941
Phylogenetic assessment reveals continuous evolution and circulation of pigeon-derived virulent avian avulaviruses 1 in Eastern Europe, Asia, and Africa. PMID:28950869
A Quorum-Sensing System That Regulates Streptococcus pneumoniae Biofilm Formation and Surface Polysaccharide Production. PMID:28932816
MEGGASENSE - The Metagenome/Genome Annotated Sequence Natural Language Search Engine: A Platform for the Construction of Sequence Data Warehouses. PMID:28867956
Comprehensive analysis of amino acid sequence diversity at the F protein cleavage site of Newcastle disease virus in fusogenic activity. PMID:28863165
Pseudomonas Endocarditis with an unstable phenotype: the challenges of isolate characterization and Carbapenem stewardship with a partial review of the literature. PMID:28855980
New Genes and Functional Innovation in Mammals. PMID:28854603
Complete Genome Sequence of a Newcastle Disease Genotype XIII Virus Isolated from Indigenous Chickens in Zambia. PMID:28839026
Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems. PMID:28821820
Phylogenetic sequence analysis and functional studies reveal compensatory amino acid substitutions in loop 2 of human ribonucleotide reductase. PMID:28808063
DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea). PMID:28770080
Induction of β-Lactamase Activity and Decreased β-Lactam Susceptibility by CO2 in Clinical Bacterial Isolates. PMID:28744482
Characterization of Pontibacter altruii, sp. nov., isolated from a human blood culture. PMID:28725439
Microbial Composition and Diversity Patterns in Deep Hyperthermal Aquifers from the Western Plain of Romania. PMID:28702708
Dakarella massiliensis gen. nov., sp. nov., strain ND3T: a new bacterial genus isolated from the female genital tract. PMID:28603641
Fast and robust single PCR for Plasmodium sporozoite detection in mosquitoes using the cytochrome oxidase I gene. PMID:28569159
Expansion of the redox-sensitive proteome coincides with the plastid endosymbiosis. PMID:28504699
Molecular phylogeny of Anopheles hyrcanus group (Diptera: Culicidae) based on mtDNA COI. PMID:28478763
SilkPathDB: a comprehensive resource for the study of silkworm pathogens. PMID:28365723
Modular Organization of Residue-Level Contacts Shapes the Selection Pressure on Individual Amino Acid Sites of Ribosomal Proteins. PMID:28338825
An rbcL reference library to aid in the identification of plant species mixtures by DNA metabarcoding. PMID:28337390
Draft Genome Sequence of Rhizobium sp. Strain TBD182, an Antagonist of the Plant-Pathogenic Fungus Fusarium oxysporum, Isolated from a Novel Hydroponics System Using Organic Fertilizer. PMID:28302768
A new group of glycoside hydrolase family 13 α-amylases with an aberrant catalytic triad. PMID:28287181
Search for 5'-leader regulatory RNA structures based on gene annotation aided by the RiboGap database. PMID:28279853
Assessment of contemporary genetic diversity and inter-taxa/inter-region exchange of avian paramyxovirus serotype 1 in wild birds sampled in North America. PMID:28253898
Diversification of Orientia tsutsugamushi genotypes by intragenic recombination and their potential expansion in endemic areas. PMID:28248956
Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi). PMID:28228107
OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. PMID:28190782
The sil Locus in Streptococcus Anginosus Group: Interspecies Competition and a Hotspot of Genetic Diversity. PMID:28119678
Acidification Enhances Hybrid N2O Production Associated with Aquatic Ammonia-Oxidizing Microorganisms. PMID:28119667
Whole genome sequencing data and de novo draft assemblies for 66 teleost species. PMID:28094797
A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea. PMID:28073944
Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce. PMID:28066384
Sixty-five years of the long march in protein secondary structure prediction: the final stretch? PMID:28040746
Intraclade Heterogeneity in Nitrogen Utilization by Marine Prokaryotes Revealed Using Stable Isotope Probing Coupled with Tag Sequencing (Tag-SIP). PMID:27994576
Stable core virome despite variable microbiome after fecal transfer. PMID:27935413
A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea. PMID:27920295
Maximized Autotransporter-Mediated Expression (MATE) for Surface Display and Secretion of Recombinant Proteins in Escherichia coli. PMID:27904356
Virus Variation Resource - improved response to emergent viral outbreaks. PMID:27899678
A Review of Living Collections with Special Emphasis on Sustainability and Its Impact on Research Across Multiple Disciplines. PMID:27869477
Bioinformatic curation and alignment of genotyped hepatitis B virus (HBV) sequence data from the GenBank public database. PMID:27843753
DASP3: identification of protein sequences belonging to functionally relevant groups. PMID:27835946
Ten Simple Rules for Developing Public Biological Databases. PMID:27832061
Evolutionary study of Yersinia genomes deciphers emergence of human pathogenic species. PMID:27796355
Genomic analyses of multidrug resistant Pseudomonas aeruginosa PA1 resequenced by single-molecule real-time sequencing. PMID:27765811
Microbial culturomics unravels the halophilic microbiota repertoire of table salt: description of Gracilibacillus massiliensis sp. nov. PMID:27760679
Ancient recombination events and the origins of hepatitis E virus. PMID:27733122
Evolution of codon usage in Zika virus genomes is host and vector specific. PMID:27729643
Complete Genome Sequence of Spiroplasma turonicum Tab4cT, a Bacterium Isolated from Horse Flies (Haematopota sp.). PMID:27660788
Characterization and Comparative Genomic Analyses of Pseudomonas aeruginosa Phage PaoP5: New Members Assigned to PAK_P1-like Viruses. PMID:27659070
Presence of Vaccine-Derived Newcastle Disease Viruses in Wild Birds. PMID:27626272
Human Contamination in Public Genome Assemblies. PMID:27611326
Diversification rates and species richness across the Tree of Life. PMID:27605507
Eliciting the Functional Taxonomy from protein annotations and taxa. PMID:27534507
A Bioinformatics Analysis Reveals a Group of MocR Bacterial Transcriptional Regulators Linked to a Family of Genes Coding for Membrane Proteins. PMID:27446613
Whole-Genome Sequencing Detection of Ongoing Listeria Contamination at a Restaurant, Rhode Island, USA, 2014. PMID:27434089
Genome-sequence analysis of Acinetobacter johnsonii MB44 reveals potential nematode-virulent factors. PMID:27429894
Grapevine (Vitis vinifera) Crown Galls Host Distinct Microbiota. PMID:27371584
Optimizing sgRNA position markedly improves the efficiency of CRISPR/dCas9-mediated transcriptional repression. PMID:27353328
Complete Genome Sequences of T1-Like Phages JMPW1 and JMPW2. PMID:27340070
Goodbye genome paper, hello genome report: the increasing popularity of 'genome announcements' and their impact on science. PMID:27339634
Different Endosymbiotic Interactions in Two Hydra Species Reflect the Evolutionary History of Endosymbiosis. PMID:27324918
VgrG C terminus confers the type VI effector transport specificity and is required for binding with PAAR and adaptor-effector complex. PMID:27313214
Antimicrobial Resistance Prediction in PATRIC and RAST. PMID:27297683
Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria. PMID:27242034
Isolation of Nontuberculous Mycobacteria from the Environment of Ghanian Communities Where Buruli Ulcer Is Endemic. PMID:27208141
Conserved Features in the Structure, Mechanism, and Biogenesis of the Inverse Autotransporter Protein Family. PMID:27190006
Searching the Evolutionary Origin of Epithelial Mucus Protein Components-Mucins and FCGBP. PMID:27189557
Molecular and morphological description of Haemoproteus (Parahaemoproteus) bukaka (species nova), a haemosporidian associated with the strictly Australo-Papuan host subfamily Cracticinae. PMID:27169863
Draft Genome Sequence of the First Pathogenic Leptospira Isolates from Ecuador. PMID:27151788
Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products. PMID:27100228
Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. PMID:27082250
Data set for transcriptional response to depletion of the Shoc2 scaffolding protein. PMID:27077079
DNA barcoding to identify leaf preference of leafcutting bees. PMID:27069650
Can data repositories help find effective treatments for complex diseases? PMID:27018167
Draft Genome Sequence of a Clinically Isolated Extensively Drug-Resistant Pseudomonas aeruginosa Strain. PMID:27013045
Genome Sequences of Five Clinical Isolates of Klebsiella pneumoniae. PMID:26966211
Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus. PMID:26903998
RV-Typer: A Web Server for Typing of Rhinoviruses Using Alignment-Free Approach. PMID:26870949
Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes. PMID:26857916
Characterization of parasite-specific indels and their proposed relevance for selective anthelminthic drug targeting. PMID:26829384
Identification and Complete Genome Sequence Analysis of a Genotype XIV Newcastle Disease Virus from Nigeria. PMID:26823576
BISQUE: locus- and variant-specific conversion of genomic, transcriptomic and proteomic database identifiers. PMID:26803163
Characterization of Genomic Variants Associated with Scout and Recruit Behavioral Castes in Honey Bees Using Whole-Genome Sequencing. PMID:26784945
Testis-enriched heat shock protein A2 (HSPA2): Adaptive advantages of the birds with internal testes over the mammals with testicular descent. PMID:26733092
Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome. PMID:26731733
Fossils and living taxa agree on patterns of body mass evolution: a case study with Afrotheria. PMID:26674947
Functional prediction of hypothetical proteins in human adenoviruses. PMID:26664031
Complete Genome Sequence of Pseudomonas aeruginosa PA1, Isolated from a Patient with a Respiratory Tract Infection. PMID:26659688
Probing Xist RNA Structure in Cells Using Targeted Structure-Seq. PMID:26646615
Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest Ecosystems. PMID:26635766
Biocuration of functional annotation at the European nucleotide archive. PMID:26615190
Complete nitrification by Nitrospira bacteria. PMID:26610024
Draft Genome Sequence of a 16SrII-A Subgroup Phytoplasma Associated with Purple Coneflower (Echinacea purpurea) Witches' Broom Disease in Taiwan. PMID:26607900
GenBank. PMID:26590407
The UCSC Genome Browser database: 2016 update. PMID:26590259
HGTree: database of horizontally transferred genes determined by tree reconciliation. PMID:26578597
DNA data bank of Japan (DDBJ) progress report. PMID:26578571
VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on. PMID:26578559
The Distant Siblings-A Phylogenomic Roadmap Illuminates the Origins of Extant Diversity in Fungal Aromatic Polyketide Biosynthesis. PMID:26537223
SynLethDB: synthetic lethality database toward discovery of selective and sensitive anticancer drug targets. PMID:26516187
Complete Genome Sequence of Spiroplasma cantharicola CC-1T (DSM 21588), a Bacterium Isolated from Soldier Beetle (Cantharis carolinus). PMID:26494686
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. PMID:26476456
KEGG as a reference resource for gene and protein annotation. PMID:26476454
PhytoPath: an integrative resource for plant pathogen genomics. PMID:26476449
Genome Analysis of Pseudomonas fluorescens PCL1751: A Rhizobacterium that Controls Root Diseases and Alleviates Salt Stress for Its Plant Host. PMID:26452056
Correcting Inconsistencies and Errors in Bacterial Genome Metadata Using an Automated Curation Tool in Excel (AutoCurE). PMID:26442252
BacWGSTdb, a database for genotyping and source tracking bacterial pathogens. PMID:26433226
Complete Genome Sequence of Spiroplasma litorale TN-1T (DSM 21781), a Bacterium Isolated from a Green-Eyed Horsefly (Tabanus nigrovittatus). PMID:26430038
Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample. PMID:26404604
Francisella philomiragia Bacteremia in a Patient with Acute Respiratory Insufficiency and Acute-on-Chronic Kidney Disease. PMID:26400786
ATGme: Open-source web application for rare codon identification and custom DNA sequence optimization. PMID:26391121
Data integration in biological research: an overview. PMID:26336651
Cross Talk Inhibition Nullified by a Receiver Domain Missense Substitution. PMID:26260457
Found and Lost: The Fates of Horizontally Acquired Genes in Arthropod-Symbiotic Spiroplasma. PMID:26254485
Molecular Characterization, mRNA Expression and Alternative Splicing of Ryanodine Receptor Gene in the Brown Citrus Aphid, Toxoptera citricida (Kirkaldy). PMID:26154764
In silico discovery and modeling of non-coding RNA structure in viruses. PMID:26116541
High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome. PMID:26070213
Complete Genome Sequence of Agrobacterium tumefaciens Ach5. PMID:26044425
Conformational transition paths harbor structures useful for aiding drug discovery and understanding enzymatic mechanisms in protein kinases. PMID:26032746
Can plant viruses cross the kingdom border and be pathogenic to humans? PMID:25903834
Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks. PMID:25900361 -
GenBank
PubMed citations: 173.
173 articles citing: GenBank
A novel low temperature active maltooligosaccharides-forming amylase from Bacillus koreensis HL12 as biocatalyst for maltooligosaccharide production. PMID:35615748
Mitogenome-wise codon usage pattern from comparative analysis of the first mitogenome of Blepharipa sp. (Muga uzifly) with other Oestroid flies. PMID:35487927
GC content of plant genes is linked to past gene duplications. PMID:35025913
Small-scale agricultural grassland management can affect soil fungal community structure as much as continental scale geographic patterns. PMID:34792119
Current Approaches in Supersecondary Structures Investigation. PMID:34769310
Genomic Characterisation of a Highly Divergent Siadenovirus (Psittacine Siadenovirus F) from the Critically Endangered Orange-Bellied Parrot (Neophema chrysogaster). PMID:34578295
Biological Ingredient Analysis of Traditional Herbal Patent Medicine Fuke Desheng Wan Using the Shotgun Metabarcoding Approach. PMID:34483893
Unravelling unexplored diversity of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales, Ascomycota) in tropical Africa. PMID:34177314
Phylogenetic and Molecular Analyses of More Prevalent HCV1b Subtype in the Calabria Region, Southern Italy. PMID:33924449
Bacterial avidins are a widely distributed protein family in Actinobacteria, Proteobacteria and Bacteroidetes. PMID:33836663
Functional Analysis of Phenazine Biosynthesis Genes in Burkholderia spp. PMID:33741619
Autochthonous and Travel Acquired Hepatitis E Virus in Australia. PMID:33633719
Passive eDNA collection enhances aquatic biodiversity analysis. PMID:33619330
Two PAAR Proteins with Different C-Terminal Extended Domains Have Distinct Ecological Functions in Myxococcus xanthus. PMID:33608292
Exploring utility of genomic epidemiology to trace origins of highly pathogenic influenza A/H7N9 in Guangdong. PMID:33391821
Coprological Survey of Protostrongylid Infections in Antelopes from Souss-Massa National Park (Morocco). PMID:33364899
Genetic architecture of left ventricular noncompaction in adults. PMID:33082984
The Association of 3-Hydroxy-3-Methylglutaryl-CoA Reductase, Apolipoprotein E, and Solute Carrier Organic Anion Genetic Variants with Atorvastatin Response among Jordanian Patients with Type 2 Diabetes. PMID:33027917
Molecular Characterisation of a Novel and Highly Divergent Passerine Adenovirus 1. PMID:32957674
Plant species identity drives soil microbial community structures that persist under a following crop. PMID:32884648
Molecular analysis reveals a high diversity of Anopheles species in Karama, West Sulawesi, Indonesia. PMID:32727610
Valley Fever: Environmental Risk Factors and Exposure Pathways Deduced from Field Measurements in California. PMID:32707996
Insights into aphid prey consumption by ladybirds: Optimising field sampling methods and primer design for high throughput sequencing. PMID:32609728
Characterization of vector communities and biting behavior in South Sulawesi with host decoy traps and human landing catches. PMID:32600472
The Power of Three in Cannabis Shotgun Proteomics: Proteases, Databases and Search Engines. PMID:32549361
A genome-wide approach for identification and characterisation of metabolite-inducible systems. PMID:32139676
Biofilm Bacteria Use Stress Responses to Detect and Respond to Competitors. PMID:32084407
Draft Genome of the Asian Buffalo Leech Hirudinaria manillensis. PMID:32010187
Molecular method for the semiquantitative identification of gastrointestinal nematodes in domestic ruminants. PMID:31834492
Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage. PMID:31775607
Rapid Tuberculosis Diagnosis Using Reporter Enzyme Fluorescence. PMID:31511338
Updated Phylogeny of Chikungunya Virus Suggests Lineage-Specific RNA Architecture. PMID:31470643
Extensive Thioautotrophic Gill Endosymbiont Diversity within a Single Ctena orbiculata (Bivalvia: Lucinidae) Population and Implications for Defining Host-Symbiont Specificity and Species Recognition. PMID:31455638
Large-scale identification of pathogen essential genes during coinfection with sympatric and allopatric microbes. PMID:31427504
Differential Modulation of Quorum Sensing Signaling through QslA in Pseudomonas aeruginosa Strains PAO1 and PA14. PMID:31405911
Dual DNA Barcoding for the Molecular Identification of the Agents of Invasive Fungal Infections. PMID:31379792
Mapping the drivers of within-host pathogen evolution using massive data sets. PMID:31289267
Identification of Thermotoga maritima MSB8 GH57 α-amylase AmyC as a glycogen-branching enzyme with high hydrolytic activity. PMID:31190240
Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals. PMID:30949307
DNA metabarcoding assays reveal a diverse prey assemblage for Mobula rays in the Bohol Sea, Philippines. PMID:30891193
Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection. PMID:30809003
Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events. PMID:30735490
Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus. PMID:30627489
The Prodigal Compound: Return of Ribosyl 1,5-Bisphosphate as an Important Player in Metabolism. PMID:30567937
Genomic Signatures Among Acanthamoeba polyphaga Entoorganisms Unveil Evidence of Coevolution. PMID:30456441
Identifying antimicrobial peptides using word embedding with deep recurrent neural networks. PMID:30418485
Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers. PMID:30407549
Draft Genome Sequence of a Potentially Novel Streptococcus Species Belonging to the Streptococcus mitis Group. PMID:29954913
Introduction of novel thermostable α-amylases from genus Anoxybacillus and proposing to group the Bacillaceae related α-amylases under five individual GH13 subfamilies. PMID:29904894
BLAST-based validation of metagenomic sequence assignments. PMID:29868286
Characterization of Rhamnolipids Produced by an Arctic Marine Bacterium from the Pseudomonas fluorescence Group. PMID:29758007
Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty. PMID:29712911
A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection. PMID:29564396
Long Non-Coding RNAs Responsive to Salt and Boron Stress in the Hyper-Arid Lluteño Maize from Atacama Desert. PMID:29558449
The genes of the sulphoquinovose catabolism in Escherichia coli are also associated with a previously unknown pathway of lactose degradation. PMID:29453395
SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets. PMID:29441125
Computational Studies of Snake Venom Toxins. PMID:29271884
CRISPR-Cas Systems in Bacteroides fragilis, an Important Pathobiont in the Human Gut Microbiome. PMID:29218031
Novel large-scale chromosomal transfer in Bacteroides fragilis contributes to its pan-genome and rapid environmental adaptation. PMID:29208130
Characterization of Four Multidrug Resistance Plasmids Captured from the Sediments of an Urban Coastal Wetland. PMID:29067005
Protein-Protein Interactions in Virus-Host Systems. PMID:28861068
Fungal Hybrid B heme peroxidases - unique fusions of a heme peroxidase domain with a carbohydrate-binding domain. PMID:28839281
Enter the Dragon: The Dynamic and Multifunctional Evolution of Anguimorpha Lizard Venoms. PMID:28783084
Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages. PMID:28715480
A retrospective survey into the presence of Plasmodium spp. and Toxoplasma gondii in archived tissue samples from New Zealand raptors: New Zealand falcons (Falco novaeseelandiae), Australasian harriers (Circus approximans) and moreporks (Ninox novaeseelandiae). PMID:28660290
Molecular phylogeny of Anopheles hyrcanus group (Diptera: Culicidae) based on mtDNA COI. PMID:28478763
Optimization of amino acid replacement costs by mutational pressure in bacterial genomes. PMID:28432324
Biocuration in the structure-function linkage database: the anatomy of a superfamily. PMID:28365730
Ruminant-specific multiple duplication events of PRDM9 before speciation. PMID:28292260
Machine learning classifier for identification of damaging missense mutations exclusive to human mitochondrial DNA-encoded polypeptides. PMID:28270093
HAPPI-2: a Comprehensive and High-quality Map of Human Annotated and Predicted Protein Interactions. PMID:28212602
The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes. PMID:28187704
Online Databases for Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-Based Dynamic Data Network Platform. PMID:28179406
Evolution of the merozoite surface protein 7 (msp7) family in Plasmodium vivax and P. falciparum: A comparative approach. PMID:28163236
ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions. PMID:27899596
EYS Is a Protein Associated with the Ciliary Axoneme in Rods and Cones. PMID:27846257
Detection of Natural Resistance-Associated Substitutions by Ion Semiconductor Technology in HCV1b Positive, Direct-Acting Antiviral Agents-Naïve Patients. PMID:27618896
In Silico Genomic Fingerprints of the Bacillus anthracis Group Obtained by Virtual Hybridization. PMID:27600214
A Comprehensive Systems Biology Approach to Studying Zika Virus. PMID:27584813
Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies. PMID:27561606
High quality draft genome sequence of the type strain of Pseudomonas lutea OK2(T), a phosphate-solubilizing rhizospheric bacterium. PMID:27555890
Draft genome sequence of Mycobacterium rufum JS14(T), a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii. PMID:27486485
More Easily Cultivated Than Identified: Classical Isolation With Molecular Identification of Vaginal Bacteria. PMID:27449870
A Computational Framework for Tracing the Origins of Genomic Islands in Prokaryotes. PMID:27433520
Recent Duplication and Functional Divergence in Parasitic Nematode Levamisole-Sensitive Acetylcholine Receptors. PMID:27415016
Composition and Genetic Diversity of Mosquitoes (Diptera: Culicidae) on Islands and Mainland Shores of Kenya's Lakes Victoria and Baringo. PMID:27402888
The Ensembl gene annotation system. PMID:27337980
Improved definition of the mouse transcriptome via targeted RNA sequencing. PMID:27197243
Are There Rab GTPases in Archaea? PMID:27034425
Comparative Genomic Analysis of Sulfurospirillum cavolei MES Reconstructed from the Metagenome of an Electrosynthetic Microbiome. PMID:26983005
From GenBank to GBIF: Phylogeny-Based Predictive Niche Modeling Tests Accuracy of Taxonomic Identifications in Large Occurrence Data Repositories. PMID:26967999
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data. PMID:26921390
Differential Evolutionary Selection and Natural Evolvability Observed in ALT Proteins of Human Filarial Parasites. PMID:26890364
The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.). PMID:26684730
Taking Bioinformatics to Systems Medicine. PMID:26677177
High Diversity of CTX-M Extended-Spectrum β-Lactamases in Municipal Wastewater and Urban Wetlands. PMID:26670020
Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation. PMID:26645680
A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins. PMID:26558535
σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough. PMID:26555820
Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes. PMID:26527161
Dynamics of Rex3 in the genomes of endangered Iberian Leuciscinae (Teleostei, Cyprinidae) and their natural hybrids. PMID:26512297
The HAND Database: a gateway to understanding the role of HIV in HIV-associated neurocognitive disorders. PMID:26510927
Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities. PMID:26502721
Modelling the species jump: towards assessing the risk of human infection from novel avian influenzas. PMID:26473042
Metagenomic ventures into outer sequence space. PMID:26458273
Development of ListeriaBase and comparative analysis of Listeria monocytogenes. PMID:26444974
JRC GMO-Amplicons: a collection of nucleic acid sequences related to genetically modified organisms. PMID:26424080
Genome expansion in bacteria: the curios case of Chlamydia trachomatis. PMID:26423146
The Genomic Basis of Postponed Senescence in Drosophila melanogaster. PMID:26378456
Genome-wide expression profiling of microRNAs in poplar upon infection with the foliar rust fungus Melampsora larici-populina. PMID:26370267
Complex Ancestries of Isoprenoid Synthesis in Dinoflagellates. PMID:26291956
Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes. PMID:26230114
The Bacterial Communities of Full-Scale Biologically Active, Granular Activated Carbon Filters Are Stable and Diverse and Potentially Contain Novel Ammonia-Oxidizing Microorganisms. PMID:26209671
AAV ancestral reconstruction library enables selection of broadly infectious viral variants. PMID:26186661
IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites. PMID:26173699
Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes. PMID:26121655
Bioinformatics-Aided Venomics. PMID:26110505
Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea. PMID:26084810
Candida quercitrusa Candidemia in a 6-Year-Old Child. PMID:26063864
Collaborating and sharing data in epilepsy research. PMID:26035676
ProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins. PMID:25982853
Emergence and potential for spread of Chikungunya virus in Brazil. PMID:25976325
Digital gene expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea. PMID:25952370
Genome sequence analysis of potential probiotic strain Leuconostoc lactis EFEL005 isolated from kimchi. PMID:25935305
A unique chromatin complex occupies young α-satellite arrays of human centromeres. PMID:25927077
Ancient horizontal gene transfer and the last common ancestors. PMID:25897759
Systems medicine: evolution of systems biology from bench to bedside. PMID:25891169
The Alternaria genomes database: a comprehensive resource for a fungal genus comprised of saprophytes, plant pathogens, and allergenic species. PMID:25887485
An Ontology-Based GIS for Genomic Data Management of Rumen Microbes. PMID:25873847
A serine-arginine-rich (SR) splicing factor modulates alternative splicing of over a thousand genes in Toxoplasma gondii. PMID:25870410
Beyond research: a primer for considerations on using viral metagenomics in the field and clinic. PMID:25859244
An ancestral bacterial division system is widespread in eukaryotic mitochondria. PMID:25831547
Key challenges for the creation and maintenance of specialist protein resources. PMID:25820941
Evaluation of a Method Using Three Genomic Guided Escherichia coli Markers for Phylogenetic Typing of E. coli Isolates of Various Genetic Backgrounds. PMID:25809972
Non-crossover gene conversions show strong GC bias and unexpected clustering in humans. PMID:25806687
Ancestral Reconstruction of a Pre-LUCA Aminoacyl-tRNA Synthetase Ancestor Supports the Late Addition of Trp to the Genetic Code. PMID:25791872
A unique, highly conserved secretory invertase is differentially expressed by promastigote developmental forms of all species of the human pathogen, Leishmania. PMID:25763714
Biological databases for human research. PMID:25712261
Molecular gene profiling of Clostridium botulinum group III and its detection in naturally contaminated samples originating from various European countries. PMID:25636839
A new Heraclides swallowtail (Lepidoptera, Papilionidae) from North America is recognized by the pattern on its neck. PMID:25610342
A deeply conserved, noncanonical miRNA hosted by ribosomal DNA. PMID:25605965
Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India. PMID:25520706
Protein structure annotation resources. PMID:25502191
Quantitative bacterial transcriptomics with RNA-seq. PMID:25483350
Integrative workflows for metagenomic analysis. PMID:25478562
The UCSC Genome Browser database: 2015 update. PMID:25428374
Expanded microbial genome coverage and improved protein family annotation in the COG database. PMID:25428365
NCBI viral genomes resource. PMID:25428358
GenBank. PMID:25414350
ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts. PMID:25414346
MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data. PMID:25398900
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations. PMID:25398896
Molecular toolbox for genetic manipulation of the stalked budding bacterium Hyphomonas neptunium. PMID:25398860
The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools. PMID:25378343
REBASE--a database for DNA restriction and modification: enzymes, genes and genomes. PMID:25378308
Human cancer databases (review). PMID:25369839
Genenames.org: the HGNC resources in 2015. PMID:25361968
The immune epitope database (IEDB) 3.0. PMID:25300482
An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli. PMID:25297974
Bioinformatic approaches to augment study of epithelial-to-mesenchymal transition in lung cancer. PMID:25096367
Fast and sensitive alignment of microbial whole genome sequencing reads to large sequence datasets on a desktop PC: application to metagenomic datasets and pathogen identification. PMID:25077800
Protein engineering of selected residues from conserved sequence regions of a novel Anoxybacillus α-amylase. PMID:25069018
IthaGenes: an interactive database for haemoglobin variations and epidemiology. PMID:25058394
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. PMID:25058116
Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing. PMID:25006232
Evidence of a novel mevalonate pathway in archaea. PMID:24914732
Metabolomic tools for secondary metabolite discovery from marine microbial symbionts. PMID:24905482
Exploring the evolutionary route of the acquisition of betaine aldehyde dehydrogenase activity by plant ALDH10 enzymes: implications for the synthesis of the osmoprotectant glycine betaine. PMID:24884441
TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model. PMID:24829452
Retrotransposon hypomethylation in melanoma and expression of a placenta-specific gene. PMID:24759919
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. PMID:24723265
Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment. PMID:24488312
Database resources of the National Center for Biotechnology Information. PMID:24259429 -
GenBank
PubMed citations: 163.
163 articles citing: GenBank
Flagellotropic Bacteriophages: Opportunities and Challenges for Antimicrobial Applications. PMID:35806089
An ecological niche model to predict the geographic distribution of Haemagogus janthinomys, Dyar, 1921 a yellow fever and Mayaro virus vector, in South America. PMID:35802748
Codon usage signatures in Sabia and Chapare for host adaptation. PMID:35574503
Exploring synergies between plant metabolic modelling and machine learning. PMID:35521559
PPA-GCN: A Efficient GCN Framework for Prokaryotic Pathways Assignment. PMID:35444686
SARS-CoV-2 3CLpro whole human proteome cleavage prediction and enrichment/depletion analysis. PMID:35429835
SARS-CoV-2 historical global testing and genomic variability. PMID:35365069
Identification and Genome Analysis of an Arsenic-Metabolizing Strain of Citrobacter youngae IITK SM2 in Middle Indo-Gangetic Plain Groundwater. PMID:35309170
Haemoprotozoan surveillance in peri-urban native and introduced wildlife from Australia. PMID:35284862
Roots of the xerophyte Panicum turgidum host a cohort of ionizing-radiation-resistant biotechnologically-valuable bacteria. PMID:35197792
Circulating Phylotypes of White Spot Syndrome Virus in Bangladesh and Their Virulence. PMID:35056639
The bacterial biome of ticks and their wildlife hosts at the urban-wildland interface. PMID:34913864
Haematopoietic cell transplantation outcomes are linked to intestinal mycobiota dynamics and an expansion of Candida parapsilosis complex species. PMID:34764444
The Distribution of Campylobacter jejuni Virulence Genes in Genomes Worldwide Derived from the NCBI Pathogen Detection Database. PMID:34680933
The mitochondrial genome of Nemalecium lighti (Hydrozoa, Leptothecata). PMID:34660901
The role of vicariance and dispersal on the temporal range dynamics of forest vipers in the Neotropical region. PMID:34534245
ViMIC: a database of human disease-related virus mutations, integration sites and cis-effects. PMID:34500462
Death From Primary Amebic Meningoencephalitis After Recreational Water Exposure During Recent Travel to India-Santa Clara County, California, 2020. PMID:34395708
An extended reconstruction of human gut microbiota metabolism of dietary compounds. PMID:34354065
Advances in the computational landscape for repurposed drugs against COVID-19. PMID:34339864
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility. PMID:34329465
Sequencing and Reconstructing Helminth Mitochondrial Genomes Directly from Genomic Next-Generation Sequencing Data. PMID:34313982
Nucleotide Composition and Codon Usage Across Viruses and Their Respective Hosts. PMID:34262534
A study of the composition of the Obsoletus complex and genetic diversity of Culicoides obsoletus populations in Spain. PMID:34217330
Two new species and a new record of yellow Cantharellus from tropical Quercus forests in eastern Mexico with the proposal of a new name for the replacement of Craterellus confluens. PMID:34084073
Phylogenetic Methods for Genome-Wide Association Studies in Bacteria. PMID:33961226
The Bacterial Genomic Context of Highly Trimethoprim-Resistant DfrB Dihydrofolate Reductases Highlights an Emerging Threat to Public Health. PMID:33924456
New species and a new record of Phylloporia from Benin. PMID:33893360
Identification problems of travelling snail species-new exotic introductions to tropical greenhouses in Gothenburg, Sweden (Gastropoda: Achatinellidae, Strobilopsidae, Helicarionidae). PMID:33868824
Identification of Translation Start Sites in Bacterial Genomes. PMID:33765270
Spatial phylogenetics of the native woody plant species in Hainan, China. PMID:33717445
Phylogenetic Revision of the Genus Aliivibrio: Intra- and Inter-Species Variance Among Clusters Suggest a Wider Diversity of Species. PMID:33679646
Bridging the gap: Using reservoir ecology and human serosurveys to estimate Lassa virus spillover in West Africa. PMID:33657095
Insights on foodborne zoonotic trematodes in freshwater snails in North and Central Vietnam. PMID:33426572
HGFDB: a collective database of helmeted guinea fowl genomics. PMID:33417691
4SpecID: Reference DNA Libraries Auditing and Annotation System for Forensic Applications. PMID:33401773
Mitochondrial D-loop sequence variation and maternal lineage in the endangered Cleveland Bay horse. PMID:33270708
MarkerDB: an online database of molecular biomarkers. PMID:33245771
Blood Parasites in Endangered Wildlife-Trypanosomes Discovered During a Survey of Haemoprotozoa from the Tasmanian Devil. PMID:33114071
Large scale genome reconstructions illuminate Wolbachia evolution. PMID:33067437
New Environment, New Invaders-Repeated Horizontal Transfer of LINEs to Sea Snakes. PMID:33022046
Exploration into the origins and mobilization of di-hydrofolate reductase genes and the emergence of clinical resistance to trimethoprim. PMID:32969787
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. PMID:32929208
A Deep Learning-Based Method for Identification of Bacteriophage-Host Interaction. PMID:32813660
Production of Paralytic Shellfish Toxins (PSTs) in Toxic Alexandrium catenella is Intertwined with Photosynthesis and Energy Production. PMID:32727048
Mapping N- and C-terminals of Leishmania donovani tyrosine aminotransferase by gene truncation strategy: a functional study using in vitro and in silico approaches. PMID:32719483
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. PMID:32652120
Design of a Multiepitope-Based Peptide Vaccine against the E Protein of Human COVID-19: An Immunoinformatics Approach. PMID:32461973
Emerging role of NIK/IKK2-binding protein (NIBP)/trafficking protein particle complex 9 (TRAPPC9) in nervous system diseases. PMID:32434006
Investigating Bacteriophages Targeting the Opportunistic Pathogen Acinetobacter baumannii. PMID:32331271
Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex. PMID:32327568
Clade composition of a plant community indicates its phylogenetic diversity. PMID:32313633
BOLD and GenBank revisited - Do identification errors arise in the lab or in the sequence libraries? PMID:32298363
Further evidence of Ceratobasidium D.P. Rogers (Basidiomycota) serving as the ubiquitous fungal associate of Platanthera leucophaea (Orchidaceae) in the North American tallgrass prairie. PMID:32297130