Alliance of Genome Resources
Names
More detailed information about this field from each metasource.
Alliance of Genome Resources
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Alliance Genome Resources
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
alliance-genome
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
Names
More detailed information about this field from each metasource.
Alliance of Genome Resources
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Alliance Genome Resources
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
alliance-genome
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
Other names: Alliance Genome Resources, alliance-genome
Names
More detailed information about this field from each metasource.
Alliance of Genome Resources
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Alliance Genome Resources
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
alliance-genome
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse model organisms in understanding the genetic and genomic basis of human biology, health and disease.
Description
More detailed information about this field from each metasource.
The primary mission of the Alliance of Genome Resources (the Alliance) is to develop and maintain sustainable genome information resources that facilitate the use of diverse model organisms in understanding the genetic and genomic basis of human biology, health and disease.
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
A modern data ecosystem for model organism databases.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
Webpage:
https://www.alliancegenome.orgWebpage
More detailed information about this field from each metasource.
https://www.alliancegenome.org
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.alliancegenome.org
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Alliance of Genome Resources Portal: unified model organism research platform
PMID: 31552413
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases
PMID: 31796553
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
Publications
More detailed information about this field from each metasource.
Alliance of Genome Resources Portal: unified model organism research platform
PMID: 31552413
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases
PMID: 31796553
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
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Alliance of Genome Resources Portal: unified model organism research platform
PubMed citations: 67.
67 articles citing: Alliance of Genome Resources Portal: unified model organism research platform
Humanized yeast to model human biology, disease and evolution. PMID:35661208
OMAMO: orthology-based alternative model organism selection. PMID:35561194
Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms. PMID:35451481
Genetic variation of putative myokine signaling is dominated by biological sex and sex hormones. PMID:35416774
Making biological knowledge useful for humans and machines. PMID:35380659
Harmonizing model organism data in the Alliance of Genome Resources. PMID:35380658
Rapid assessment of the temporal function and phenotypic reversibility of neurodevelopmental disorder risk genes in Caenorhabditis elegans. PMID:35363276
FlyBase: a guided tour of highlighted features. PMID:35266522
Stress response gene family expansions correlate with invasive potential in teleost fish. PMID:35258619
ModelMatcher: A scientist-centric online platform to facilitate collaborations between stakeholders of rare and undiagnosed disease research. PMID:35224820
Zebrafish information network, the knowledgebase for Danio rerio research. PMID:35166825
Prediction and analysis of functional RNA structures within the integrative genomics viewer. PMID:35047817
Darwinian genomics and diversity in the tree of life. PMID:35042807
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources. PMID:34897464
Reconstruction of human genome evolution in yeast: an educational primer for use with "systematic humanization of the yeast cytoskeleton discerns functionally replaceable from divergent human genes". PMID:34849890
On and Off: Epigenetic Regulation of C. albicans Morphological Switches. PMID:34832617
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research. PMID:34741192
ConVarT: a search engine for matching human genetic variants with variants from non-human species. PMID:34718716
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO). PMID:34710081
Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891
KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases. PMID:34537014
Multiple genome viewer (MGV): a new tool for visualization and comparison of multiple annotated genomes. PMID:34448927
Expression, Interaction, and Role of Pseudogene Adh6-ps1 in Cancer Phenotypes. PMID:34413637
Murine allele and transgene symbols: ensuring unique, concise, and informative nomenclature. PMID:34389871
A nomenclature for echinoderm genes. PMID:34386815
Genome-scale metabolic network reconstruction of model animals as a platform for translational research. PMID:34282017
Genome-Wide Differential Methylation Profiles from Two Terpene-Rich Medicinal Plant Extracts Administered in Osteoarthritis Rats. PMID:34199631
The Joubert syndrome protein CEP41 is excluded from the distal segment of cilia in C. elegans. PMID:34113804
Spatio-temporal mRNA tracking in the early zebrafish embryo. PMID:34099733
Zebrafish as a Model for the Study of Lipid-Lowering Drug-Induced Myopathies. PMID:34073503
COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model. PMID:34015823
Integration of 1:1 orthology maps and updated datasets into Echinobase. PMID:34010390
Model organisms contribute to diagnosis and discovery in the undiagnosed diseases network: current state and a future vision. PMID:33962631
Student Annotations of Published Data as a Collaboration between an Online Laboratory Course and the C. elegans Database, WormBase. PMID:33884078
Wormicloud: a new text summarization tool based on word clouds to explore the C. elegans literature. PMID:33787871
Genome-wide RNAi screen for regulators of UPRmt in Caenorhabditis elegans mutants with defects in mitochondrial fusion. PMID:33784383
Natural variation in the regulation of neurodevelopmental genes modifies flight performance in Drosophila. PMID:33735180
The 2021 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:33396976
A Rab escort protein regulates the MAPK pathway that controls filamentous growth in yeast. PMID:33335117
RNAi-based screens uncover a potential new role for the orphan neuropeptide receptor Moody in Drosophila female germline stem cell maintenance. PMID:33307547
The Gene Ontology resource: enriching a GOld mine. PMID:33290552
In silico identification of Drosophila melanogaster genes encoding RNA polymerase subunits. PMID:33274328
Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease. PMID:33257774
Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology. PMID:33231642
FlyBase: updates to the Drosophila melanogaster knowledge base. PMID:33219682
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier. PMID:33206638
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more. PMID:33174605
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. PMID:33170273
Genenames.org: the HGNC and VGNC resources in 2021. PMID:33152070
FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update. PMID:33104800
The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions. PMID:33070389
Alcohol Sensitivity as an Endophenotype of Alcohol Use Disorder: Exploring Its Translational Utility between Rodents and Humans. PMID:33066036
Data mining of human plasma proteins generates a multitude of highly predictive aging clocks that reflect different aspects of aging. PMID:33031577
Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease. PMID:32995795
The evolution of coloration and opsins in tarantulas. PMID:32962546
COVID-19 Biomarkers in research: Extension of the OncoMX cancer biomarker data model to capture biomarker data from other diseases. PMID:32935101
Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration. PMID:32791514
Automated generation of gene summaries at the Alliance of Genome Resources. PMID:32559296
PINOT: an intuitive resource for integrating protein-protein interactions. PMID:32527260
Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes. PMID:32522745
The Quest for Orthologs benchmark service and consensus calls in 2020. PMID:32374845
Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase. PMID:32185395
Data libraries - the missing element for modeling biological systems. PMID:32100391
"What You Need, Baby, I Got It": Transposable Elements as Suppliers of Cis-Operating Sequences in Drosophila. PMID:32028630
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604
The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases. PMID:31796553
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform. PMID:31713623 -
The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases
PubMed citations: 20.
20 articles citing: The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases
REDfly: An Integrated Knowledgebase for Insect Regulatory Genomics. PMID:35886794
Humanized yeast to model human biology, disease and evolution. PMID:35661208
A Saccharomyces eubayanus haploid resource for research studies. PMID:35396494
Making biological knowledge useful for humans and machines. PMID:35380659
Harmonizing model organism data in the Alliance of Genome Resources. PMID:35380658
JaponicusDB: rapid deployment of a model organism database for an emerging model species. PMID:35380656
Zebrafish information network, the knowledgebase for Danio rerio research. PMID:35166825
WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans. PMID:35134929
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources. PMID:34897464
Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. PMID:34791383
PANTHER: Making genome-scale phylogenetics accessible to all. PMID:34717010
Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891
Multiple genome viewer (MGV): a new tool for visualization and comparison of multiple annotated genomes. PMID:34448927
PLEK2, RRM2, GCSH: A Novel WWOX-Dependent Biomarker Triad of Glioblastoma at the Crossroads of Cytoskeleton Reorganization and Metabolism Alterations. PMID:34204789
The Descent of Databases. PMID:33789353
Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology. PMID:33231642
Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes. PMID:33172385
The Zebrafish Information Network: major gene page and home page updates. PMID:33170210
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848
FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update. PMID:33104800
Tags:
Tags
More detailed information about this field from each metasource.
disease
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
disease process modeling
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
functional association
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene functional annotation
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene name
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome map
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
homologous
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
model organism
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
orthologous
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
data governance
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
database management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
ontology and terminology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
literature and language
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:07.766442
Tags
More detailed information about this field from each metasource.
disease
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
disease process modeling
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
functional association
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene functional annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene name
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome map
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
homologous
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
model organism
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
orthologous
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: Alliance of Genome Resources; Alliance of Genome Resources; DOI: https://doi.org/10.25504/FAIRsharing.6ba5fw; Last edited: March 9, 2021, 11:52 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
data governance
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
database management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
ontology and terminology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
literature and language
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:07.766442
disease disease process modeling functional association gene gene functional annotation gene name genome genome map homologous model organism orthology phenotype model organisms data governance data management ontology and terminology literature and language
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