GeneWeaver
Names
More detailed information about this field from each metasource.
GeneWeaver
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
geneweaver
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
Names
More detailed information about this field from each metasource.
GeneWeaver
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
geneweaver
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
Names
More detailed information about this field from each metasource.
GeneWeaver
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
geneweaver
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
The GeneWeaver data and analytics website is a publically available resource for storing, curating and analyzing sets of genes from heterogeneous data sources. The system enables discovery of relationships among genes, variants, traits, drugs, environments, anatomical structures and diseases implicitly found through gene set intersections. By enumerating the common and distinct biological molecules associated with all subsets of curated or user submitted groups of gene sets and gene networks, GeneWeaver empowers users with the ability to construct data driven descriptions of shared and unique biological processes, diseases and traits within and across species.
Description
More detailed information about this field from each metasource.
The GeneWeaver data and analytics website is a publically available resource for storing, curating and analyzing sets of genes from heterogeneous data sources. The system enables discovery of relationships among genes, variants, traits, drugs, environments, anatomical structures and diseases implicitly found through gene set intersections. By enumerating the common and distinct biological molecules associated with all subsets of curated or user submitted groups of gene sets and gene networks, GeneWeaver empowers users with the ability to construct data driven descriptions of shared and unique biological processes, diseases and traits within and across species.
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
Functional genomics analysis system
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Curated repository of genomic experimental results with an accompanying tool set for dynamic integration of these data sets, enabling users to interactively address questions about sets of biological functions and their relations to sets of genes.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
Webpage:
http://www.geneweaver.orgWebpage
More detailed information about this field from each metasource.
http://www.geneweaver.org
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://www.GeneWeaver.org
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://ontologicaldiscovery.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
Licence:
Name: GeneWeaver Data SharingLicence name
More detailed information about this field from each metasource.
GeneWeaver Data Sharing
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
Licence URL
More detailed information about this field from each metasource.
https://www.geneweaver.org/datasharing
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
GeneWeaver: a web-based system for integrative functional genomics
PMID: 22080549
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
Ontological Discovery Environment: a system for integrating gene-phenotype associations
PMID: 19733230
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data
PMID: 26092690
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/nar/GKR968
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
GeneWeaver: a web-based system for integrative functional genomics
PMID: 22080549
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
Ontological Discovery Environment: a system for integrating gene-phenotype associations
PMID: 19733230
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data
PMID: 26092690
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/nar/GKR968
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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GeneWeaver: a web-based system for integrative functional genomics
PubMed citations: 65.
65 articles citing: GeneWeaver: a web-based system for integrative functional genomics
Identifying genetic determinants of inflammatory pain in mice using a large-scale gene-targeted screen. PMID:35552317
Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891
The integrated stress response contributes to tRNA synthetase-associated peripheral neuropathy. PMID:34516839
Using hierarchical similarity to examine the genetics of Behçet's disease. PMID:34507623
Transcriptome analysis of chloride intracellular channel knockdown in Drosophila identifies oxidation-reduction function as possible mechanism of altered sensitivity to ethanol sedation. PMID:34228751
A Computational-Based Drug Repurposing Method Targeting SARS-CoV-2 and its Neurological Manifestations Genes and Signaling Pathways. PMID:34211268
Integration of evidence across human and model organism studies: A meeting report. PMID:33893716
Multi-omic and multi-species meta-analyses of nicotine consumption. PMID:33542196
An update on the role of common genetic variation underlying substance use disorders. PMID:33457110
Computational tools for geroscience. PMID:33241167
Alcohol Sensitivity as an Endophenotype of Alcohol Use Disorder: Exploring Its Translational Utility between Rodents and Humans. PMID:33066036
Whole-Genome Sequencing of Inbred Mouse Strains Selected for High and Low Open-Field Activity. PMID:32939625
Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration. PMID:32791514
Discovery of a Role for Rab3b in Habituation and Cocaine Induced Locomotor Activation in Mice Using Heterogeneous Functional Genomic Analysis. PMID:32742255
Genetic Architecture and Molecular Neuropathology of Human Cocaine Addiction. PMID:32457073
Network Pharmacology-Based Strategy for Predicting Therapy Targets of Traditional Chinese Medicine Xihuang Pill on Liver Cancer. PMID:32256653
Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform. PMID:31971940
A natural mouse model reveals genetic determinants of systemic capillary leak syndrome (Clarkson disease). PMID:31701027
Cisplatin-resistant triple-negative breast cancer subtypes: multiple mechanisms of resistance. PMID:31684899
Network-Based Functional Prediction Augments Genetic Association To Predict Candidate Genes for Histamine Hypersensitivity in Mice. PMID:31645420
On Finding and Enumerating Maximal and Maximum k-Partite Cliques in k-Partite Graphs. PMID:31448059
Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration. PMID:31101000
National Institute on Drug Abuse genomics consortium white paper: Coordinating efforts between human and animal addiction studies. PMID:31012252
Studying alcohol use disorder using Drosophila melanogaster in the era of 'Big Data'. PMID:30992041
Curating gene sets: challenges and opportunities for integrative analysis. PMID:30888410
Bipartite graphs in systems biology and medicine: a survey of methods and applications. PMID:29648623
From gene networks to drugs: systems pharmacology approaches for AUD. PMID:29497781
Reproducibility and replicability of rodent phenotyping in preclinical studies. PMID:29357292
Prevalence of sexual dimorphism in mammalian phenotypic traits. PMID:28650954
NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology. PMID:28320317
Orbitofrontal Neuroadaptations and Cross-Species Synaptic Biomarkers in Heavy-Drinking Macaques. PMID:28270566
A Systems Approach Implicates a Brain Mitochondrial Oxidative Homeostasis Co-expression Network in Genetic Vulnerability to Alcohol Withdrawal. PMID:28096806
The allostatic impact of chronic ethanol on gene expression: A genetic analysis of chronic intermittent ethanol treatment in the BXD cohort. PMID:27838001
Progress With Nonhuman Animal Models of Addiction. PMID:27588527
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. PMID:27374120
Systems genetic and pharmacological analysis identifies candidate genes underlying mechanosensation in the von Frey test. PMID:27231153
Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol. PMID:26834590
GeneWeaver: data driven alignment of cross-species genomics in biology and disease. PMID:26656951
Applications of comparative evolution to human disease genetics. PMID:26338499
Kv7 channels in the nucleus accumbens are altered by chronic drinking and are targets for reducing alcohol consumption. PMID:26104325
GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data. PMID:26092690
Linking traits based on their shared molecular mechanisms. PMID:25781485
Initial locomotor sensitivity to cocaine varies widely among inbred mouse strains. PMID:25727211
KCNN Genes that Encode Small-Conductance Ca2+-Activated K+ Channels Influence Alcohol and Drug Addiction. PMID:25662840
Identifying common components across biological network graphs using a bipartite data model. PMID:25374613
A composite model for subgroup identification and prediction via bicluster analysis. PMID:25347824
AmalgamScope: merging annotations data across the human genome. PMID:24967409
Identification of a QTL in Mus musculus for alcohol preference, withdrawal, and Ap3m2 expression using integrative functional genomics and precision genetics. PMID:24923803
Active, phosphorylated fingolimod inhibits histone deacetylases and facilitates fear extinction memory. PMID:24859201
Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene. PMID:24700285
Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle. PMID:24666668
Semantic particularity measure for functional characterization of gene sets using gene ontology. PMID:24489737
gsGator: an integrated web platform for cross-species gene set analysis. PMID:24423189
Differential expression of the alternatively spliced OPRM1 isoform μ-opioid receptor-1K in HIV-infected individuals. PMID:24413261
Mouse phenome database. PMID:24243846
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation. PMID:23409969
Genetic and molecular network analysis of behavior. PMID:23195314
Using genome-wide expression profiling to define gene networks relevant to the study of complex traits: from RNA integrity to network topology. PMID:23195313
Biological databases for behavioral neurobiology. PMID:23195119
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. PMID:22961259
Systems genetics of the lateral septal nucleus in mouse: heritability, genetic control, and covariation with behavioral and morphological traits. PMID:22952935
Abstracts of the 11th Annual UT-ORNL-KBRIN Bioinformatics Summit 2012. Louisville, Kentucky, USA. March 30-April 1, 2012. PMID:22873757
Genome-wide microarray comparison reveals downstream genes of Pax6 in the developing mouse cerebellum. PMID:22817342
Accelerating discovery for complex neurological and behavioral disorders through systems genetics and integrative genomics in the laboratory mouse. PMID:22422471
Quantitative trait loci for sensitivity to ethanol intoxication in a C57BL/6J×129S1/SvImJ inbred mouse cross. PMID:22371272 -
Ontological Discovery Environment: a system for integrating gene-phenotype associations
PubMed citations: 21.
21 articles citing: Ontological Discovery Environment: a system for integrating gene-phenotype associations
Multi-omic and multi-species meta-analyses of nicotine consumption. PMID:33542196
Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration. PMID:32791514
Biclique: an R package for maximal biclique enumeration in bipartite graphs. PMID:32085812
Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol. PMID:26834590
GeneWeaver: data driven alignment of cross-species genomics in biology and disease. PMID:26656951
GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data. PMID:26092690
Identifying common components across biological network graphs using a bipartite data model. PMID:25374613
A composite model for subgroup identification and prediction via bicluster analysis. PMID:25347824
Identification of a QTL in Mus musculus for alcohol preference, withdrawal, and Ap3m2 expression using integrative functional genomics and precision genetics. PMID:24923803
The Netrin-1 receptor DCC is a regulator of maladaptive responses to chronic morphine administration. PMID:24884839
On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types. PMID:24731198
Using genome-wide expression profiling to define gene networks relevant to the study of complex traits: from RNA integrity to network topology. PMID:23195313
Potential translational targets revealed by linking mouse grooming behavioral phenotypes to gene expression using public databases. PMID:23123364
Abstracts of the 11th Annual UT-ORNL-KBRIN Bioinformatics Summit 2012. Louisville, Kentucky, USA. March 30-April 1, 2012. PMID:22873757
Genome-wide microarray comparison reveals downstream genes of Pax6 in the developing mouse cerebellum. PMID:22817342
Accelerating discovery for complex neurological and behavioral disorders through systems genetics and integrative genomics in the laboratory mouse. PMID:22422471
Chloride intracellular channels modulate acute ethanol behaviors in Drosophila, Caenorhabditis elegans and mice. PMID:22239914
GeneWeaver: a web-based system for integrative functional genomics. PMID:22080549
Autism candidate genes via mouse phenomics. PMID:21397722
Using expression genetics to study the neurobiology of ethanol and alcoholism. PMID:20813241
High-throughput behavioral phenotyping in the expanded panel of BXD recombinant inbred strains. PMID:19958391 -
GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data
PubMed citations: 7.
7 articles citing: GeneWeaver: finding consilience in heterogeneous cross-species functional genomics data
Differential expression analysis in ovarian cancer: A functional genomics and systems biology approach. PMID:34220265
Interpretation of psychiatric genome-wide association studies with multispecies heterogeneous functional genomic data integration. PMID:32791514
Discovery of a Role for Rab3b in Habituation and Cocaine Induced Locomotor Activation in Mice Using Heterogeneous Functional Genomic Analysis. PMID:32742255
High-Diversity Mouse Populations for Complex Traits. PMID:31133439
Integration of heterogeneous functional genomics data in gerontology research to find genes and pathway underlying aging across species. PMID:30978202
Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol. PMID:26834590
GeneWeaver: data driven alignment of cross-species genomics in biology and disease. PMID:26656951 - http://dx.doi.org/10.1093/nar/GKR968
Tags:
Tags
More detailed information about this field from each metasource.
disease
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
drug
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
microarray data and other gene expression databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
experimental design and studies
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:10.100293
Tags
More detailed information about this field from each metasource.
disease
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
drug
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: GeneWeaver; GeneWeaver; DOI: https://doi.org/10.25504/FAIRsharing.1y79y9; Last edited: June 22, 2021, 11:59 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
microarray data and other gene expression databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
experimental design and studies
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
microarray experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:10.100293
disease drug phenotype microarray data and other gene expression molecular interactions, pathways and networks experimental design and studies model organisms genotype and phenotype microarray experiment
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