PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.


Name: Open Data Commons Open Database License (ODC ODbL)



catalytic activity disease drug drug interaction drug metabolic process drug name enzymatic reaction enzyme gene gene name genetic disorder glucose metabolic process high-throughput screening metabolite pathway model protein protein interaction protein name protein structure reaction data receptor regulation of gene expression signaling polypeptide region metabolomics small molecule cell biology molecular interactions, pathways and networks endocrinology and metabolism

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