Virulence Factor Database
Names
More detailed information about this field from each metasource.
Virulence Factor Database
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
VFDB
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
VFDB - Virulence Factors Database
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
vfdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
Names
More detailed information about this field from each metasource.
Virulence Factor Database
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
VFDB
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
VFDB - Virulence Factors Database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
vfdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.486740
Other names: VFDB, VFDB - Virulence Factors Database, vfdb
Names
More detailed information about this field from each metasource.
Virulence Factor Database
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
VFDB
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
VFDB - Virulence Factors Database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
vfdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.486740
VFDB is an integrated and comprehensive database of virulence factors for bacterial pathogens (also including Chlamydia and Mycoplasma).
Description
More detailed information about this field from each metasource.
VFDB is an integrated and comprehensive database of virulence factors for bacterial pathogens (also including Chlamydia and Mycoplasma).
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
VFDB (http://www.mgc.ac.cn/VFs/) is aimed to provide an in-depth coverage of the major virulence factors (VFs) from various best-characterized bacterial pathogens, with emphasis on functional and structural biology, and essential immunology. This thorough and comprehensive VFDB will be maintained up to date, which would be helpful for researchers to elucidate pathogenic mechanisms in infectious diseases that require further immediate investigations for the development of novel approaches of the disease treatment and prevention. The first release of VFDB contains cumulative information of VFs for 16 important bacteria pathogens, virulence-associated genes, protein structural features, functions, mechanisms and important literatures. Pathogenicity islands, which are clusters of genes encoding virulence traits, are also included. Many graphic illustrations are made according to the original research papers or reviews for an easy grasp of the functions and structures of some VFs. The database is user-friendly; fully searchable by query text or by function categories of VFs, as well as by BLAST comparison against all the VF-related genes.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Comprehensive repository of bacterial virulence factors.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.486740
Webpage:
http://www.mgc.ac.cn/VFs/Webpage
More detailed information about this field from each metasource.
http://www.mgc.ac.cn/VFs/
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
Publications:
Publications
More detailed information about this field from each metasource.
VFDB: a reference database for bacterial virulence factors
PMID: 15608208
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
PMID: 22067448
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics
PMID: 17984080
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/GKR989
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
VFDB: a reference database for bacterial virulence factors
PMID: 15608208
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
PMID: 22067448
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics
PMID: 17984080
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/GKR989
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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VFDB: a reference database for bacterial virulence factors
PubMed citations: 531.
531 articles citing: VFDB: a reference database for bacterial virulence factors
Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory. PMID:35893685
Identification of Peptoniphilus vaginalis-Like Bacteria, Peptoniphilus septimus sp. nov., From Blood Cultures in a Cervical Cancer Patient Receiving Chemotherapy: Case and Implications. PMID:35880078
Pathogenomic in silico approach identifies NSP-A and Fe-IIISBP as possible drug targets in Neisseria Meningitidis MC58 and development of pharmacophores as novel therapeutic candidates. PMID:35879631
Resistance and Pathogenicity of Salmonella Thompson Isolated from Incubation End of a Poultry Farm. PMID:35878365
Genomic Investigation of Proteus mirabilis Isolates Recovered From Pig Farms in Zhejiang Province, China. PMID:35875581
The Gastrointestinal Load of Carbapenem-Resistant Enterobacteriacea Is Associated With the Transition From Colonization to Infection by Klebsiella pneumoniae Isolates Harboring the blaKPC Gene. PMID:35865821
A plasmid network from the gut microbiome of semi-isolated human groups reveals unique and shared metabolic and virulence traits. PMID:35840779
Fictibacillus marinisediminis sp. nov., a nitrate-reducing bacterium isolated from marine sediment in Hupo Basin, Republic of Korea. PMID:35829821
Computer-Aided Multi-Epitope Vaccine Design against Enterobacter xiangfangensis. PMID:35805383
Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells. PMID:35804292
Whole genome sequence analysis of Salmonella Typhi provides evidence of phylogenetic linkage between cases of typhoid fever in Santiago, Chile in the 1980s and 2010-2016. PMID:35767580
Design of a Multi-Epitopes Based Chimeric Vaccine against Enterobacter cloacae Using Pan-Genome and Reverse Vaccinology Approaches. PMID:35746494
Genomic and Biological Profile of a Novel Bacteriophage, Vibrio phage Virtus, Which Improves Survival of Sparus aurata Larvae Challenged with Vibrio harveyi. PMID:35745484
Staphylococcal saoABC Operon Codes for a DNA-Binding Protein SaoC Implicated in the Response to Nutrient Deficit. PMID:35742885
Anti-Inflammatory Effects of Limosilactobacillus fermentum KGC1601 Isolated from Panax ginseng and Its Probiotic Characteristics. PMID:35741904
Are Virulence and Antibiotic Resistance Genes Linked? A Comprehensive Analysis of Bacterial Chromosomes and Plasmids. PMID:35740113
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning. PMID:35725628
Characterization of Stenotrophomonas maltophilia phage AXL1 as a member of the genus Pamexvirus encoding resistance to trimethoprim-sulfamethoxazole. PMID:35717537
Genomic Analysis of Carbapenem-Resistant Comamonas in Water Matrices: Implications for Public Health and Wastewater Treatments. PMID:35708324
Seed-Borne Erwinia persicina Affects the Growth and Physiology of Alfalfa (Medicago sativa L.). PMID:35694312
Antibiotic resistance: bioinformatics-based understanding as a functional strategy for drug design. PMID:35685616
Phenotypic and Genetic Characterization of Klebsiella pneumoniae Isolates from Wild Animals in Central Italy. PMID:35681810
Evolutionarily stable gene clusters shed light on the common grounds of pathogenicity in the Acinetobacter calcoaceticus-baumannii complex. PMID:35653398
Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets. PMID:35650642
Genomic Surveillance of Clinical Pseudomonas aeruginosa Isolates Reveals an Additive Effect of Carbapenemase Production on Carbapenem Resistance. PMID:35638817
Identification and Comparative Genomic Analysis of Type VI Secretion Systems and Effectors in Klebsiella pneumoniae. PMID:35633723
Antimicrobial Resistance and Virulence Characteristics of Klebsiella pneumoniae Isolates in Kenya by Whole-Genome Sequencing. PMID:35631066
Kinases on Double Duty: A Review of UniProtKB Annotated Bifunctionality within the Kinome. PMID:35625613
Whole-Genome Sequencing of a Colistin-Resistant Acinetobacter baumannii Strain Isolated at a Tertiary Health Facility in Pretoria, South Africa. PMID:35625238
Invasive Infection With emm3/ST15 Streptococcus pyogenes: The First Case Report From China and Complete Genome Analysis. PMID:35615092
Machine Learning in Antibacterial Drug Design. PMID:35592425
Complete genome sequence of Pseudomonas stutzeri S116 owning bifunctional catalysis provides insights into affecting performance of microbial fuel cells. PMID:35590268
Diversity and distribution of Type VI Secretion System gene clusters in bacterial plasmids. PMID:35581398
Insights from the comparative genome analysis of natural rubber degrading Nocardia species. PMID:35574501
Vaccinomics to Design a Multi-Epitopes Vaccine for Acinetobacter baumannii. PMID:35564967
Microbiome Profiling of Enterotoxigenic Escherichia coli (ETEC) Carriers Highlights Signature Differences between Symptomatic and Asymptomatic Individuals. PMID:35536001
Distinctive signatures of pathogenic and antibiotic resistant potentials in the hadal microbiome. PMID:35468809
The Number and Type of Chaperone-Usher Fimbriae Reflect Phylogenetic Clade Rather than Host Range in Salmonella. PMID:35467401
Safety Assessment of Lactiplantibacillus plantarum TWK10 Based on Whole-Genome Sequencing, Phenotypic, and Oral Toxicity Analysis. PMID:35456834
Comparative Genomic Analysis of a Panton-Valentine Leukocidin-Positive ST22 Community-Acquired Methicillin-Resistant Staphylococcus aureus from Pakistan. PMID:35453247
Environmental factors shaping the gut microbiome in a Dutch population. PMID:35418674
Brachybacterium epidermidis Sp. Nov., a Novel Bacterial Species Isolated from the Back of the Right Hand, in a 67-Year-Old Healthy Woman. PMID:35392139
Draft Genome Sequence of Lacticaseibacillus rhamnosus IMI 507023. PMID:35389246
Draft Genome Sequence of Pediococcus pentosaceus IMI 507024. PMID:35343777
WGS-Based Phenotyping and Molecular Characterization of the Resistome, Virulome and Plasmid Replicons in Klebsiella pneumoniae Isolates from Powdered Milk Produced in Germany. PMID:35336140
Designing of a Recombinant Multi-Epitopes Based Vaccine against Enterococcus mundtii Using Bioinformatics and Immunoinformatics Approaches. PMID:35329417
Prevalence and Characteristics of Streptococcus agalactiae from Freshwater Fish and Pork in Hong Kong Wet Markets. PMID:35326860
Whole genome sequencing of Klebsiella pneumoniae clinical isolates sequence type 627 isolated from Egyptian patients. PMID:35320327
Whole genome sequence data of Lactiplantibacillus plantarum IMI 507027. PMID:35310818
Comparative Genomic Analysis of Xanthomonas campestris pv. campestris Isolates BJSJQ20200612 and GSXT20191014 Provides Novel Insights Into Their Genetic Variability and Virulence. PMID:35308372
Comparative analysis of Streptococcus suis genomes identifies novel candidate virulence-associated genes in North American isolates. PMID:35303917
Genomic diversity and antimicrobial resistance among non-typhoidal Salmonella associated with human disease in The Gambia. PMID:35302932
Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation. PMID:35298370
The Role of Plasmid and Resistance Gene Acquisition in the Emergence of ST23 Multi-Drug Resistant, Hypervirulent Klebsiella pneumoniae. PMID:35297657
Genetic and virulence characteristics of a Raoultella planticola isolate resistant to carbapenem and tigecycline. PMID:35264602
Genomic characterization of multidrug-resistant Salmonella serovar Kentucky ST198 isolated in poultry flocks in Spain (2011-2017). PMID:35259085
Analysis of global Aeromonas veronii genomes provides novel information on source of infection and virulence in human gastrointestinal diseases. PMID:35227192
Metagenomic Analysis Reveals a Changing Microbiome Associated With the Depth of Invasion of Oral Squamous Cell Carcinoma. PMID:35222330
Comparative Genomics of Clostridium baratii Reveals Strain-Level Diversity in Toxin Abundance. PMID:35208668
Diversity of Pseudomonas aeruginosa Temperate Phages. PMID:35196122
Evidence of episodic positive selection in Corynebacterium diphtheriae complex of species and its implementations in identification of drug and vaccine targets. PMID:35190783
Closed Genome Sequences of Providencia alcalifaciens Isolates from Dogs. PMID:35175129
Haloterrigena gelatinilytica sp. nov., a new extremely halophilic archaeon isolated from salt-lake. PMID:35166931
Whole genome sequence analyses-based assessment of virulence potential and antimicrobial susceptibilities and resistance of Enterococcus faecium strains isolated from commercial swine and cattle probiotic products. PMID:35150575
Comparative Analysis of Colon Cancer-Derived Fusobacterium nucleatum Subspecies: Inflammation and Colon Tumorigenesis in Murine Models. PMID:35130731
The crewed journey to Mars and its implications for the human microbiome. PMID:35125119
An invasive Haemophilus influenzae serotype b infection in an Anglo-Saxon plague victim. PMID:35109894
F Plasmid Lineages in Escherichia coli ST95: Implications for Host Range, Antibiotic Resistance, and Zoonoses. PMID:35076267
Methicillin-resistant Staphylococcus aureus in China: a multicentre longitudinal study and whole-genome sequencing. PMID:35060838
Phages in the Gut Ecosystem. PMID:35059329
Comparative Genomics of Typical and Atypical Aeromonas salmonicida Complete Genomes Revealed New Insights into Pathogenesis Evolution. PMID:35056638
Safety evaluation of Lactococcus lactis IDCC 2301 isolated from homemade cheese. PMID:35035910
Core-Proteomics-Based Annotation of Antigenic Targets and Reverse-Vaccinology-Assisted Design of Ensemble Immunogen against the Emerging Nosocomial Infection-Causing Bacterium Elizabethkingia meningoseptica. PMID:35010455
Genomic analysis of Elizabethkingia species from aquatic environments: Evidence for potential clinical transmission. PMID:34988536
Whole genome sequence of bacteremic Clostridium tertium in a World War I soldier, 1914. PMID:34984406
A catalogue of 1,167 genomes from the human gut archaeome. PMID:34969981
Williamsia soli sp. nov., an actinobacterium isolated from soil at a thermal power plant in Yantai, China. PMID:34966962
Pseudaestuariivita rosea sp. nov., isolated from Acmaea sp., a marine mollusk. PMID:34964073
Genomic Analysis of the First European Bacteriophages with Depolymerase Activity and Biocontrol Efficacy against the Phytopathogen Ralstonia solanacearum. PMID:34960808
Investigating Pathogenicity and Virulence of Staphylococcus pettenkoferi: An Emerging Pathogen. PMID:34948410
Hybrid Assembly Provides Improved Resolution of Plasmids, Antimicrobial Resistance Genes, and Virulence Factors in Escherichia coli and Klebsiella pneumoniae Clinical Isolates. PMID:34946161
Safety Evaluation of Weissella cibaria JW15 by Phenotypic and Genotypic Property Analysis. PMID:34946052
Streptococcus sputorum, a Novel Member of Streptococcus with Multidrug Resistance, Exhibits Cytotoxicity. PMID:34943744
Genomic Analysis of Global Staphylococcus argenteus Strains Reveals Distinct Lineages With Differing Virulence and Antibiotic Resistance Gene Content. PMID:34925305
Comparative Genomics Analyses Support the Reclassification of Bisgaard Taxon 40 as Mergibacter gen. nov., With Mergibacter septicus sp. nov. as Type Species: Novel Insights Into the Phylogeny and Virulence Factors of a Pasteurellaceae Family Member Associated With Mortality Events in Seabirds. PMID:34880834
VFDB 2022: a general classification scheme for bacterial virulence factors. PMID:34850947
First report from Bangladesh on genetic diversity of multidrug-resistant Pasteurella multocida type B:2 in fowl cholera. PMID:34840474
Genetic Characterization of Salmonella Infantis with Multiple Drug Resistance Profiles Isolated from a Poultry-Farm in Chile. PMID:34835497
First Report of CC5-MRSA-IV-SCCfus "Maltese Clone" in Bat Guano. PMID:34835390
Annotation of Potential Vaccine Targets and Design of a Multi-Epitope Subunit Vaccine against Yersinia pestis through Reverse Vaccinology and Validation through an Agent-Based Modeling Approach. PMID:34835260
High Genomic Identity between Clinical and Environmental Strains of Herbaspirillum frisingense Suggests Pre-Adaptation to Different Hosts and Intrinsic Resistance to Multiple Drugs. PMID:34827347
Antimicrobial Resistance and Genomic Characterization of Six New Sequence Types in Multidrug-Resistant Pseudomonas aeruginosa Clinical Isolates from Pakistan. PMID:34827324
In silico Methods for Identification of Potential Therapeutic Targets. PMID:34826045
The Genetic Relatedness and Antimicrobial Resistance Patterns of Mastitis-Causing Staphylococcus aureus Strains Isolated from New Zealand Dairy Cattle. PMID:34822660
Deciphering Multidrug-Resistant Acinetobacter baumannii from a Pediatric Cancer Hospital in Egypt. PMID:34787450
An integrated computational framework to design a multi-epitopes vaccine against Mycobacterium tuberculosis. PMID:34753983
Multiple bacterial virulence factors focused on adherence and biofilm formation associate with outcomes in cirrhosis. PMID:34743650
Assessment of the plasmidome of an extremophilic microbial community from the Diamante Lake, Argentina. PMID:34728656
Genomic Epidemiology and Characterization of Methicillin-Resistant Staphylococcus aureus from Bloodstream Infections in China. PMID:34726482
Metagenomic strategies identify diverse integron-integrase and antibiotic resistance genes in the Antarctic environment. PMID:34713606
Phage Treatment Trial to Eradicate LA-MRSA from Healthy Carrier Pigs. PMID:34696318
A Comprehensive Computer Aided Vaccine Design Approach to Propose a Multi-Epitopes Subunit Vaccine against Genus Klebsiella Using Pan-Genomics, Reverse Vaccinology, and Biophysical Techniques. PMID:34696195
Proteome-Wide Mapping and Reverse Vaccinology Approaches to Design a Multi-Epitope Vaccine against Clostridium perfringens. PMID:34696187
A tale of two STs: molecular and clinical epidemiology of MRSA t304 in Norway 2008-2016. PMID:34687359
Designing a Multi-Epitope Vaccine against Chlamydia trachomatis by Employing Integrated Core Proteomics, Immuno-Informatics and In Silico Approaches. PMID:34681096
The Distribution of Campylobacter jejuni Virulence Genes in Genomes Worldwide Derived from the NCBI Pathogen Detection Database. PMID:34680933
Co-Occurrence of blaOXA-23 in the Chromosome and Plasmid: Increased Fitness in Carbapenem-Resistant Acinetobacter baumannii. PMID:34680777
Shotgun-metagenomics based prediction of antibiotic resistance and virulence determinants in Staphylococcus aureus from periprosthetic tissue on blood culture bottles. PMID:34675288
Genomic Characterization of Endemic and Ecdemic Non-typhoidal Salmonella enterica Lineages Circulating Among Animals and Animal Products in South Africa. PMID:34671335
International High-Risk Clones Among Extended-Spectrum β-Lactamase-Producing Escherichia coli in Dhaka, Bangladesh. PMID:34671331
Heatwave-associated Vibrio infections in Germany, 2018 and 2019. PMID:34651572
Comparative genome characterization of Leptospira interrogans from mild and severe leptospirosis patients. PMID:34638178
Western and non-western gut microbiomes reveal new roles of Prevotella in carbohydrate metabolism and mouth-gut axis. PMID:34620880
Haloferax litoreum sp. nov., Haloferax marinisediminis sp. nov., and Haloferax marinum sp. nov., low salt-tolerant haloarchaea isolated from seawater and sediment. PMID:34604935
Metagenomic investigation of potential abortigenic pathogens in foetal tissues from Australian horses. PMID:34600470
Brief Protocol for EDGE Bioinformatics: Analyzing Microbial and Metagenomic NGS Data. PMID:34595290
The endemic Helicobacter pylori population in Southern Vietnam has both South East Asian and European origins. PMID:34593031
Plant growth promoting endophyte Burkholderia contaminans NZ antagonizes phytopathogen Macrophomina phaseolina through melanin synthesis and pyrrolnitrin inhibition. PMID:34591915
Challenges in Drug Discovery for Intracellular Bacteria. PMID:34578204
Assessing the Risks of Potential Bacterial Pathogens Attaching to Different Microplastics during the Summer-Autumn Period in a Mariculture Cage. PMID:34576804
Comparative Genomic Analysis of Novel Bifidobacterium longum subsp. longum Strains Reveals Functional Divergence in the Human Gut Microbiota. PMID:34576801
Genomic Investigation of Methicillin-Resistant Staphylococcus aureus ST113 Strains Isolated from Tertiary Care Hospitals in Pakistan. PMID:34572703
Characterisation of Early Positive mcr-1 Resistance Gene and Plasmidome in Escherichia coli Pathogenic Strains Associated with Variable Phylogroups under Colistin Selection. PMID:34572623
Subtractive Proteomics and Immuno-informatics Approaches for Multi-peptide Vaccine Prediction Against Klebsiella oxytoca and Validation Through In Silico Expression. PMID:34566545
Long-Term Intrahost Evolution of Staphylococcus aureus Among Diabetic Patients With Foot Infections. PMID:34552578
Genome-wide analysis provides a deeper understanding of the population structure of the Salmonella enterica serotype Paratyphi B complex in Bangladesh. PMID:34550065
Epidemiological Analysis of Salmonella enterica subsp. enterica Serovar Dublin in German Cattle Herds Using Whole-Genome Sequencing. PMID:34523945
Anti-inflammatory potential of Lactiplantibacillus plantarum IDCC 3501 and its safety evaluation. PMID:34495527
Genomic comparisons and phylogenetic analysis of mastitis-related staphylococci with a focus on adhesion, biofilm, and related regulatory genes. PMID:34462461
Recovery of small plasmid sequences via Oxford Nanopore sequencing. PMID:34431763
Usage of Metatranscriptomics to Understand Oral Disease. PMID:34410646
Isolation of a Virulent Aeromonas salmonicida subsp. masoucida Bacteriophage and Its Application in Phage Therapy in Turbot (Scophthalmus maximus). PMID:34406829
Recent Evolution and Genomic Profile of Salmonella enterica Serovar Heidelberg Isolates from Poultry Flocks in Brazil. PMID:34406824
Effects of antibiotic resistance, drug target attainment, bacterial pathogenicity and virulence, and antibiotic access and affordability on outcomes in neonatal sepsis: an international microbiology and drug evaluation prospective substudy (BARNARDS). PMID:34384533
Antimicrobial susceptibilities and comparative whole genome analysis of two isolates of the probiotic bacterium Lactiplantibacillus plantarum, strain ATCC 202195. PMID:34354117
Whole-Genome Comparative Analysis Reveals Association Between Salmonella Genomic Variation and Egg Production Systems. PMID:34322531
Genomic Investigation of Salmonella Isolates Recovered From a Pig Slaughtering Process in Hangzhou, China. PMID:34305874
Elucidation of global and national genomic epidemiology of Salmonella enterica serovar Enteritidis through multilevel genome typing. PMID:34292145
Comprehensive Molecular Dissection of Dermatophilus congolensis Genome and First Observation of tet(Z) Tetracycline Resistance. PMID:34281179
At the Gate of Mutualism: Identification of Genomic Traits Predisposing to Insect-Bacterial Symbiosis in Pathogenic Strains of the Aphid Symbiont Serratia symbiotica. PMID:34268133
Epidemiological and genomic characteristics of Acinetobacter baumannii from different infection sites using comparative genomics. PMID:34247587
Pangenome analysis and virulence profiling of Streptococcus intermedius. PMID:34238216
Suppressed inflammation in obese children induced by a high-fiber diet is associated with the attenuation of gut microbial virulence factor genes. PMID:34233588
Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms. PMID:34214112
Subtractive proteomics approach to Unravel the druggable proteins of the emerging pathogen Waddlia chondrophila and drug repositioning on its MurB protein. PMID:34195427
Metagenomic profiling of antibiotic resistance and virulence removal: Activated sludge vs. algal wastewater treatment system. PMID:34182338
Next-Generation Sequencing for Whole-Genome Characterization of Weissella cibaria UTNGt21O Strain Originated From Wild Solanum quitoense Lam. Fruits: An Atlas of Metabolites With Biotechnological Significance. PMID:34163450
Analysis of Genetic Diversity and Antibiotic Options for Clinical Listeria monocytogenes Infections in China. PMID:34159214
Phenotypic and genomic hallmarks of a novel, potentially pathogenic rapidly growing Mycobacterium species related to the Mycobacterium fortuitum complex. PMID:34155223
Salmonella Derby: A Comparative Genomic Analysis of Strains From Germany. PMID:34108944
Molecular Characterization of Multidrug-Resistant Yersinia enterocolitica From Foodborne Outbreaks in Sweden. PMID:34054769
Genomic analysis of Neisseria elongata isolate from a patient with infective endocarditis. PMID:34038628
Quantitative proteomic analysis reveals that serine/threonine kinase is involved in Streptococcus suis virulence and adaption to stress conditions. PMID:34028569
Safety and robustness aspects analysis of Lactobacillus delbrueckii ssp. bulgaricus LDB-C1 based on the genome analysis and biological tests. PMID:34021387
Molecular Epidemiology of Clinical and Colonizing Methicillin-Resistant Staphylococcus Isolates in Companion Animals. PMID:33969030
First Description of the Composition and the Functional Capabilities of the Skin Microbial Community Accompanying Severe Scabies Infestation in Humans. PMID:33922793
Microdiversity of Enterococcus faecalis isolates in cases of infective endocarditis: selection of non-synonymous mutations and large deletions is associated with phenotypic modifications. PMID:33913790
Colistin-Resistant mcr-1-Positive Escherichia coli ST131-H22 Carrying bla CTX-M-15 and qnrB19 in Agricultural Soil. PMID:33897674
Phenotypic and Genomic Variability of Serial Peri-Lung Transplantation Pseudomonas aeruginosa Isolates From Cystic Fibrosis Patients. PMID:33897629
Genome-Based Drug Target Identification in Human Pathogen Streptococcus gallolyticus. PMID:33841489
Typing methods based on whole genome sequencing data. PMID:33829127
Antimicrobial Susceptibility and Genomic Analysis of Aliarcobacter cibarius and Aliarcobacter thereius, Two Rarely Detected Aliarcobacter Species. PMID:33816322
Complete Whole Genome Sequences of Escherichia coli Surrogate Strains and Comparison of Sequence Methods with Application to the Food Industry. PMID:33809423
Clinically Relevant Escherichiacoli Isolates from Process Waters and Wastewater of Poultry and Pig Slaughterhouses in Germany. PMID:33800539
The global dissemination of hospital clones of Enterococcus faecium. PMID:33785076
Hidden Markov Model: a shortest unique representative approach to detect the protein toxins, virulence factors and antibiotic resistance genes. PMID:33785071
Population structure and uropathogenic potential of extended-spectrum cephalosporin-resistant Escherichia coli from retail chicken meat. PMID:33781204
Characterization of a Deep Sea Bacillus toyonensis Isolate: Genomic and Pathogenic Features. PMID:33777842
Prevalence and Genetic Diversity of Listeria monocytogenes Isolated From Retail Pork in Wuhan, China. PMID:33767677
Genomic diversity of Mycobacterium avium subsp. paratuberculosis: pangenomic approach for highlighting unique genomic features with newly constructed complete genomes. PMID:33736686
Full pathogen characterisation: species identification including the detection of virulence factors and antibiotic resistance genes via multiplex DNA-assays. PMID:33727586
Prevention and Control of Pathogens Based on Big-Data Mining and Visualization Analysis. PMID:33718431
Draft Genome Sequence of a Salmonella enterica subsp. enterica Serotype Choleraesuis Strain Isolated from the Pulp of Muskmelons. PMID:33707316
Nitric oxide (NO) elicits aminoglycoside tolerance in Escherichia coli but antibiotic resistance gene carriage and NO sensitivity have not co-evolved. PMID:33682076
Draft genome and description of Microvirga mediterraneensis strain Marseille-Q2068T sp. nov., a new bacterium isolated from human healthy skin. PMID:33659063
Evolutionary Dynamics Based on Comparative Genomics of Pathogenic Escherichia coli Lineages Harboring Polyketide Synthase (pks) Island. PMID:33653937
Complete Genome Sequence Analysis of Brevibacillus laterosporus Bl-zj Reflects its Potential Algicidal Response. PMID:33649996
Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany. PMID:33643254
Comprehensive in silico survey of the Mycolicibacterium mobilome reveals an as yet underexplored diversity. PMID:33620305
Draft genome and description of Mixta mediterraneensis strain Marseille-Q2057T sp.nov., a new bacterium isolated from human healthy skin. PMID:33604053
Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome. PMID:33597514
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data. PMID:33597026
Genomic Characterization of Multidrug-Resistant Escherichia coli BH100 Sub-strains. PMID:33584554
Whole-genome comparative analysis of Malaysian Burkholderia pseudomallei clinical isolates. PMID:33565959
Genotypic and Phenotypic Characterization of Staphylococcus aureus Isolates from the Respiratory Tract in Mechanically-Ventilated Patients. PMID:33562023
First Report of an Extensively Drug-Resistant ST23 Klebsiella pneumoniae of Capsular Serotype K1 Co-Producing CTX-M-15, OXA-48 and ArmA in Spain. PMID:33557209
Virulence factor-related gut microbiota genes and immunoglobulin A levels as novel markers for machine learning-based classification of autism spectrum disorder. PMID:33510860
Genome Sequence and Adaptation Analysis of the Human and Rice Pathogenic Strain Burkholderia glumae AU6208. PMID:33498266
Niche-Specific Adaptive Evolution of Lactobacillus plantarum Strains Isolated From Human Feces and Paocai. PMID:33489942
Genomic Distinctions of LA-MRSA ST398 on Dairy Farms From Different German Federal States With a Low Risk of Severe Human Infections. PMID:33488532
Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in Mexico. PMID:33408222
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin. PMID:33407536
Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen. PMID:33406073
Escherichia ruysiae sp. nov., a novel Gram-stain-negative bacterium, isolated from a faecal sample of an international traveller. PMID:33406029
Assessment of Safety and Probiotic Traits of Enterococcus durans OSY-EGY, Isolated From Egyptian Artisanal Cheese, Using Comparative Genomics and Phenotypic Analyses. PMID:33362752
CRISPR-Cas systems restrict horizontal gene transfer in Pseudomonas aeruginosa. PMID:33349652
Comparative genomics of Klebsiella michiganensis BD177 and related members of Klebsiella sp. reveal the symbiotic relationship with Bactrocera dorsalis. PMID:33339499
Virulence role of the outer membrane protein CarO in carbapenem-resistant Acinetobacter baumannii. PMID:33300460
Draft genome and description of Chryseobacterium manosquense strain Marseille-Q2069T sp. nov., a new bacterium isolated from human healthy skin. PMID:33294197
Safety assessment of Streptococcus thermophilus IDCC 2201 used for product manufacturing in Korea. PMID:33282276
Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing. PMID:33271875
Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull (Chroicocephalus novaehollandiae) Reveals the Acquisition of Multidrug Resistance Plasmids. PMID:33239365
Genomic analysis of Helicobacter himalayensis sp. nov. isolated from Marmota himalayana. PMID:33228534
Pangenome Analysis of Mycobacterium tuberculosis Reveals Core-Drug Targets and Screening of Promising Lead Compounds for Drug Discovery. PMID:33213029
Genomic Characterization of Salmonella Minnesota Clonal Lineages Associated with Poultry Production in Brazil. PMID:33167341
Antimicrobial Resistance of Coagulase-Positive Staphylococcus Isolates Recovered in a Veterinary University Hospital. PMID:33138100
Draft Genome Sequence of Streptomyces mexicanus Strain Q0842, Isolated from Human Skin. PMID:33122417
Assessing the Genomic Variability of Gardnerella vaginalis through Comparative Genomic Analyses: Evolutionary and Ecological Implications. PMID:33097505
Genomic Characteristics of Invasive Streptococcus pneumoniae Serotype 1 in New Caledonia Prior to the Introduction of PCV13. PMID:33088176
Integrated Phenotypic-Genotypic Analysis of Candidate Probiotic Weissella Cibaria Strains Isolated from Dairy Cows in Kuwait. PMID:33085038
First Detection of GES-5-Producing Escherichia coli from Livestock-An Increasing Diversity of Carbapenemases Recognized from German Pig Production. PMID:33081194
Metagenomic analysis of the dust particles collected from the suction tube and the suction funnel of a dermatological laser smoke evacuator system. PMID:33079312
A comparative whole genome analysis of Helicobacter pylori from a human dense South Asian setting. PMID:33073485
Novel Hyaluronate Lyase Involved in Pathogenicity of Streptococcus dysgalactiae subsp. equisimilis. PMID:33072013
Genome Sequences of Four Shigella boydii Strains Representative of the Major S. boydii Clades. PMID:33033129
Phylogeographical Analysis Reveals the Historic Origin, Emergence, and Evolutionary Dynamics of Methicillin-Resistant Staphylococcus aureus ST228. PMID:32983046
Insights into the complete genomes of carbapenem-resistant Acinetobacter baumannii harbouring bla OXA-23, bla OXA-420 and bla NDM-1 genes using a hybrid-assembly approach. PMID:32974602
Draft Genome Sequence of a New Delhi Metallo-β-Lactamase (NDM-1)-Producing Providencia stuartii Strain Isolated in Lima, Peru. PMID:32972938
Comprehensive genome analysis of a pangolin-associated Paraburkholderia fungorum provides new insights into its secretion systems and virulence. PMID:32953261
MAIRA- real-time taxonomic and functional analysis of long reads on a laptop. PMID:32938391
Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing. PMID:32928108
Modeling Novel Putative Drugs and Vaccine Candidates against Tick-Borne Pathogens: A Subtractive Proteomics Approach. PMID:32906620
Genotype-phenotype correlation of β-lactamase-producing uropathogenic Escherichia coli (UPEC) strains from Bangladesh. PMID:32883963
Twentieth-century emergence of antimicrobial resistant human- and bovine-associated Salmonella enterica serotype Typhimurium lineages in New York State. PMID:32879348
The Development of High-Quality Multispecies Probiotic Formulations: From Bench to Market. PMID:32824147
Comprehensive genome based analysis of Vibrio parahaemolyticus for identifying novel drug and vaccine molecules: Subtractive proteomics and vaccinomics approach. PMID:32813697
Phenotypic and genotypic characterization of Salmonella Typhimurium isolates from humans and foods in Brazil. PMID:32810191
Gut microbiome of endangered Tor putitora (Ham.) as a reservoir of antibiotic resistance genes and pathogens associated with fish health. PMID:32787773
Updates on defining and detecting diarrheagenic Escherichia coli pathotypes. PMID:32773499
Emergence of Multidrug-Resistant Salmonella enterica Subspecies enterica Serovar Infantis of Multilocus Sequence Type 2283 in German Broiler Farms. PMID:32765483
Draft Genome Sequence of Escherichia marmotae E690, Isolated from Beef Cattle. PMID:32763941
MYCO WELL D-ONE detection of Ureaplasma spp. and Mycoplasma hominis in sexual health patients in Wales. PMID:32725499
Potential evolutionary impact of integrative and conjugative elements (ICEs) and genomic islands in the Ralstonia solanacearum species complex. PMID:32719415
Antimicrobial resistance and virulence of Pseudomonas spp. among healthy animals: concern about exolysin ExlA detection. PMID:32669597
First Report on the Plasmidome From a High-Altitude Lake of the Andean Puna. PMID:32655530
Comparative Genomics of Acinetobacter baumannii Clinical Strains From Brazil Reveals Polyclonal Dissemination and Selective Exchange of Mobile Genetic Elements Associated With Resistance Genes. PMID:32655514
Genomic analyses of multidrug-resistant Salmonella Indiana, Typhimurium, and Enteritidis isolates using MinION and MiSeq sequencing technologies. PMID:32614888
Determining the Genetic Characteristics of Resistance and Virulence of the "Epidermidis Cluster Group" Through Pan-Genome Analysis. PMID:32596166
Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa. PMID:32576671
Pseudomonas aeruginosa core metabolism exerts a widespread growth-independent control on virulence. PMID:32528034
Comparative Genome Analysis of a Pathogenic Erysipelothrix rhusiopathiae Isolate WH13013 from Pig Reveals Potential Genes Involve in Bacterial Adaptions and Pathogenesis. PMID:32512708
Campylobacter novaezeelandiae sp. nov., isolated from birds and water in New Zealand. PMID:32501787
Coexistence of Antibiotic Resistance Genes and Virulence Factors Deciphered by Large-Scale Complete Genome Analysis. PMID:32487745
Is Shiga Toxin-Producing Escherichia coli O45 No Longer a Food Safety Threat? The Danger is Still Out There. PMID:32455956
Identification of Kosakonia cowanii as a rare cause of acute cholecystitis: case report and review of the literature. PMID:32448208
Genome-wide Analysis of Four Enterobacter cloacae complex type strains: Insights into Virulence and Niche Adaptation. PMID:32424332
Genome Sequencing and Analysis of the Fungal Symbiont of Sirex noctilio, Amylostereum areolatum: Revealing the Biology of Fungus-Insect Mutualism. PMID:32404513
Genomic variation among closely related Vibrio alginolyticus strains is located on mobile genetic elements. PMID:32393168
Draft Genome Sequence of Salirhabdus euzebyi Strain Q1438. PMID:32354978
The Biotherapeutic Potential of Lactobacillus reuteri Characterized Using a Target-Specific Selection Process. PMID:32351460
Investigating Bacteriophages Targeting the Opportunistic Pathogen Acinetobacter baumannii. PMID:32331271
Whole Genome Sequencing and Characteristics of mcr-1-Harboring Plasmids of Porcine Escherichia coli Isolates Belonging to the High-Risk Clone O25b:H4-ST131 Clade B. PMID:32265859
Whole Genome Sequencing Differentiates Presumptive Extended Spectrum Beta-Lactamase Producing Escherichia coli along Segments of the One Health Continuum. PMID:32235751
Complete Genome Sequence of Pediococcus pentosaceus Strain GDIAS 001. PMID:32193246
Genotypic characterization of multiple drug resistant Escherichia coli isolates from a pediatric cancer hospital in Egypt. PMID:32139767
Characterization and Genomic Analysis of ValSw3-3, a New Siphoviridae Bacteriophage Infecting Vibrio alginolyticus. PMID:32132234
Pathogenicity Characterization of Prevalent-Type Streptococcus dysgalactiae subsp. equisimilis Strains. PMID:32117127
Contents, Construction Methods, Data Resources, and Functions Comparative Analysis of Bacteria Databases. PMID:32071553
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii. PMID:32066773
Combining Standard Molecular Typing and Whole Genome Sequencing to Investigate Pseudomonas aeruginosa Epidemiology in Intensive Care Units. PMID:32047733
Wound infection with Vibrio harveyi following a traumatic leg amputation after a motorboat propeller injury in Mallorca, Spain: a case report and review of literature. PMID:32019500
Escherichia coli O8:H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea. PMID:32016129
High Genomic Diversity and Heterogenous Origins of Pathogenic and Antibiotic-Resistant Escherichia coli in Household Settings Represent a Challenge to Reducing Transmission in Low-Income Settings. PMID:31941809
Antimicrobial Resistance and Virulence Gene Profiles of Methicillin-Resistant and -Susceptible Staphylococcus aureus From Food Products in Denmark. PMID:31920996
Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens). PMID:31888476
Geography, seasonality, and host-associated population structure influence the fecal microbiome of a genetically depauparate Arctic mammal. PMID:31871639
A 5700 year-old human genome and oral microbiome from chewed birch pitch. PMID:31848342
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria. PMID:31844663
Complete Genome Sequence of a Staphylococcus aureus Isolate from a Nasopharyngeal Swab from a Mine Worker in South Africa. PMID:31831607
Comprehensive analysis of protein acetyltransferases of human pathogen Mycobacterium tuberculosis. PMID:31820790
Genetic boundaries delineate the potential human pathogen Salmonella bongori into discrete lineages: divergence and speciation. PMID:31801462
Investigation of potential pathogenicity of Willaertia magna by investigating the transfer of bacteria pathogenicity genes into its genome. PMID:31797948
Interrogating the Whole-Genome Shotgun Sequence of Escherichia coli Sequence Type 127 Strain 1538RHQ, Which Harbors Virulent Antigenic Factors, Isolated from a Mastitic Cow. PMID:31776215
Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease. PMID:31723265
Isolation and Characterization of Specific Phages to Prepare a Cocktail Preventing Vibrio sp. Va-F3 Infections in Shrimp (Litopenaeus vannamei). PMID:31681202
Genetic Features of mcr-1 Mediated Colistin Resistance in CMY-2-Producing Escherichia coli From Romanian Poultry. PMID:31681191
Genomic comparison of diverse Salmonella serovars isolated from swine. PMID:31675365
The subgingival microbiome associated with periodontitis in type 2 diabetes mellitus. PMID:31673077
Comparative genome analysis of 15 clinical Shigella flexneri strains regarding virulence and antibiotic resistance. PMID:31663057
A survey of Fusobacterium nucleatum genes modulated by host cell infection. PMID:31661053
Pan-genome analysis of Riemerella anatipestifer reveals its genomic diversity and acquired antibiotic resistance associated with genomic islands. PMID:31654228
Horizontal gene transfer contributes to virulence and antibiotic resistance of Vibrio harveyi 345 based on complete genome sequence analysis. PMID:31640552
Insights into the Bacterial Profiles and Resistome Structures Following the Severe 2018 Flood in Kerala, South India. PMID:31635115
Characterization of an Environmental Multidrug-Resistant Acinetobacter seifertii and Comparative Genomic Analysis Reveals Co-occurrence of Antimicrobial Resistance and Metal Tolerance Determinants. PMID:31620107
Metagenomic Signatures of Gut Infections Caused by Different Escherichia coli Pathotypes. PMID:31585992
Genome Mining and Comparative Pathogenomic Analysis of An Endemic Methicillin-Resistant Staphylococcus Aureus (MRSA) Clone, ST612-CC8-t1257-SCCmec_IVd(2B), Isolated in South Africa. PMID:31569754
Draft Genome Sequences of Three Novel Acinetobacter Isolates from an Irish Commercial Pig Farm. PMID:31558633
Optimizing a Whole-Genome Sequencing Data Processing Pipeline for Precision Surveillance of Health Care-Associated Infections. PMID:31554234
Microbial Metabolism Modulates Antibiotic Susceptibility within the Murine Gut Microbiome. PMID:31523007
Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally. PMID:31465454
Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing. PMID:31447815
Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages. PMID:31447809
Decreased metabolism and increased tolerance to extreme environments in Staphylococcus warneri during long-term spaceflight. PMID:31414557
Immunoinformatics-Aided Design and Evaluation of a Potential Multi-Epitope Vaccine against Klebsiella Pneumoniae. PMID:31409021
Complete Genome Sequence of Weissella hellenica 0916-4-2 and Its Comparative Genomic Analysis. PMID:31396169
Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium. PMID:31331270
Genome sequencing and analysis of Salmonella enterica subsp. enterica serovar Stanley UPM 517: Insights on its virulence-associated elements and their potentials as vaccine candidates. PMID:31293824
Salmonella enterica Serovar Panama, an Understudied Serovar Responsible for Extraintestinal Salmonellosis Worldwide. PMID:31262982
Whole-genome sequencing reveals Listeria monocytogenes diversity and allows identification of long-term persistent strains in Brazil. PMID:31251828
A First Study of the Virulence Potential of a Bacillus subtilis Isolate From Deep-Sea Hydrothermal Vent. PMID:31214515
Draft Genome Sequence of Kroppenstedtia sanguinis X0209T, a Clinical Isolate Recovered from Human Blood. PMID:31196918
Vibrio sp. dhg as a platform for the biorefinery of brown macroalgae. PMID:31171782
Genomic Characterization Provides New Insights for Detailed Phage- Resistant Mechanism for Brucella abortus. PMID:31130926
Draft Genome Sequences of the Type Strains of Six Macrococcus Species. PMID:31072882
Draft Genome Sequences of Macrococcus caseolyticus, Macrococcus canis, Macrococcus bohemicus, and Macrococcus goetzii. PMID:31072881
Nontuberculous Mycobacteria Persistence in a Cell Model Mimicking Alveolar Macrophages. PMID:31035520
Adaptive Evolution within Gut Microbiomes of Healthy People. PMID:31028005
Genomic characterization of Kerstersia gyiorum SWMUKG01, an isolate from a patient with respiratory infection in China. PMID:30978196
Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline. PMID:30964891
Prioritization of potential vaccine targets using comparative proteomics and designing of the chimeric multi-epitope vaccine against Pseudomonas aeruginosa. PMID:30918289
Clinically Unreported Salmonellosis Outbreak Detected via Comparative Genomic Analysis of Municipal Wastewater Salmonella Isolates. PMID:30902850
Whole-genome sequencing revealed independent emergence of vancomycin-resistant Enterococcus faecium causing sequential outbreaks over 3 years in a tertiary care hospital. PMID:30888549
Infectious Complications Are Associated With Alterations in the Gut Microbiome in Pediatric Patients With Acute Lymphoblastic Leukemia. PMID:30838178
Comparison of Open-Source Reverse Vaccinology Programs for Bacterial Vaccine Antigen Discovery. PMID:30837982
Comparative genomic analysis of enterotoxigenic Escherichia coli O159 strains isolated from diarrheal patients in Korea. PMID:30828387
Inhibition of bacterial toxin recognition of membrane components as an anti-virulence strategy. PMID:30820243
Whole-genome analysis of extraintestinal Escherichia coli sequence type 73 from a single hospital over a 2 year period identified different circulating clonal groups. PMID:30810518
Complete genome sequence of acetate-producing Klebsiella pneumoniae L5-2 isolated from infant feces. PMID:30800595
Draft genome sequence of Enterococcus faecium SP15, a potential probiotic strain isolated from spring water. PMID:30795795
Whole-Genome Sequences of Five Acinetobacter baumannii Strains From a Child With Leukemia M2. PMID:30787915
Comparative Genomic Analyses Reveal Core-Genome-Wide Genes Under Positive Selection and Major Regulatory Hubs in Outlier Strains of Pseudomonas aeruginosa. PMID:30787911
Whole-genome-based phylogeny of Bacillus cytotoxicus reveals different clades within the species and provides clues on ecology and evolution. PMID:30760727
Extensive drug resistant Salmonella enterica serovar Senftenberg carrying blaNDM encoding plasmid p5558 (IncA/C) from India. PMID:30722761
1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses. PMID:30718868
Detecting antibiotic resistance genes and human potential pathogenic Bacteria in fishmeal by culture-independent method. PMID:30707381
Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene. PMID:30672731
Genomic and Virulence Characterization of Intrauterine Pathogenic Escherichia coli With Multi-Drug Resistance Isolated From Cow Uteri With Metritis. PMID:30619205
Antimicrobial Susceptibility and Genomic Structure of Arcobacter skirrowii Isolates. PMID:30619152
Evolution of the Population Structure of Staphylococcus pseudintermedius in France. PMID:30619143
Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex. PMID:30606234
Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg. PMID:30603048
Complete Genome Sequence of Streptacidiphilus sp. Strain 15-057A, Obtained from Bronchial Lavage Fluid. PMID:30533790
Whole Genome Sequencing detects Inter-Facility Transmission of Carbapenem-resistant Klebsiella pneumoniae. PMID:30503842
Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient. PMID:30425690
Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen. PMID:30405564
Whole genome sequencing analysis of multiple Salmonella serovars provides insights into phylogenetic relatedness, antimicrobial resistance, and virulence markers across humans, food animals and agriculture environmental sources. PMID:30400810
Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data. PMID:30395323
VFDB 2019: a comparative pathogenomic platform with an interactive web interface. PMID:30395255
PLSDB: a resource of complete bacterial plasmids. PMID:30380090
Comparative genomics of clinical strains of Pseudomonas aeruginosa strains isolated from different geographic sites. PMID:30353070
BacCapSeq: a Platform for Diagnosis and Characterization of Bacterial Infections. PMID:30352937
Staphylococcus aureus from patients with chronic rhinosinusitis show minimal genetic association between polyp and non-polyp phenotypes. PMID:30349419
Complete Genome Sequence of Bacillus cereus CC-1, A Novel Marine Selenate/Selenite Reducing Bacterium Producing Metallic Selenides Nanomaterials. PMID:30343326
The Redox-Sensing Regulator Rex Contributes to the Virulence and Oxidative Stress Response of Streptococcus suis Serotype 2. PMID:30280091
Widespread Antibiotic, Biocide, and Metal Resistance in Microbial Communities Inhabiting a Municipal Waste Environment and Anthropogenically Impacted River. PMID:30258036
Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains. PMID:30180794
The Phytophthora infestans Haustorium Is a Site for Secretion of Diverse Classes of Infection-Associated Proteins. PMID:30154258
Molecular insights into Vibrio cholerae's intra-amoebal host-pathogen interactions. PMID:30150745
Genomic characterization of NDM-1 and 5, and OXA-181 carbapenemases in uropathogenic Escherichia coli isolates from Riyadh, Saudi Arabia. PMID:30110357
Comparative Genome Analysis of 2 Mycobacterium Tuberculosis Strains from Pakistan: Insights Globally Into Drug Resistance, Virulence, and Niche Adaptation. PMID:30083049
Potential Survival and Pathogenesis of a Novel Strain, Vibrio parahaemolyticus FORC_022, Isolated From a Soy Sauce Marinated Crab by Genome and Transcriptome Analyses. PMID:30034383
Network-based genetic investigation of virulence-associated phenotypes in methicillin-resistant Staphylococcus aureus. PMID:30018396
Evolutionary conservation of the antimicrobial function of mucus: a first defence against infection. PMID:30002868
Genetic and Phylogenetic Characteristics of Pasteurella multocida Isolates From Different Host Species. PMID:29997608
Comparative genomic analysis of Enterococcus faecalis: insights into their environmental adaptations. PMID:29996769
Comparison of Database Search Methods for the Detection of Legionella pneumophila in Water Samples Using Metagenomic Analysis. PMID:29971047
Landscape of the genome and host cell response of Mycobacterium shigaense reveals pathogenic features. PMID:29934568
Microevolution of Streptococcus agalactiae ST-261 from Australia Indicates Dissemination via Imported Tilapia and Ongoing Adaptation to Marine Hosts or Environment. PMID:29915111
Subtractive proteomics to identify novel drug targets and reverse vaccinology for the development of chimeric vaccine against Acinetobacter baumannii. PMID:29899345
Genetic Determinants Associated With in Vivo Survival of Burkholderia cenocepacia in the Caenorhabditis elegans Model. PMID:29896180
High genomic diversity of multi-drug resistant wastewater Escherichia coli. PMID:29895899
The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures. PMID:29887846
Data on genome sequencing, analysis and annotation of a pathogenic Bacillus cereus 062011msu. PMID:29876371
Complete Genome Sequence of the Virulent Aeromonas salmonicida subsp. masoucida Strain RFAS1. PMID:29853510
A Polyphasic and Taxogenomic Evaluation Uncovers Arcobacter cryaerophilus as a Species Complex That Embraces Four Genomovars. PMID:29755434
Distribution Patterns of Polyphosphate Metabolism Pathway and Its Relationships With Bacterial Durability and Virulence. PMID:29755430
Complete Genome Sequence of Multiple-Antibiotic-Resistant Streptococcus parauberis Strain SPOF3K, Isolated from Diseased Olive Flounder (Paralichthys olivaceus). PMID:29700142
Interplay Between Virulence and Variability Factors as a Potential Driver of Invasive Meningococcal Disease. PMID:29686800
Genomic epidemiology of multidrug-resistant Gram-negative organisms. PMID:29604079
Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection. PMID:29599516
Factors Involved in the Persistence of a Shiga Toxin-Producing Escherichia coli O157:H7 Strain in Bovine Feces and Gastro-Intestinal Content. PMID:29593666
Design of a Broad-Range Bacteriophage Cocktail That Reduces Pseudomonas aeruginosa Biofilms and Treats Acute Infections in Two Animal Models. PMID:29555626
Comparative Genomic Analysis of a Clinical Isolate of Klebsiella quasipneumoniae subsp. similipneumoniae, a KPC-2 and OKP-B-6 Beta-Lactamases Producer Harboring Two Drug-Resistance Plasmids from Southeast Brazil. PMID:29503635
Comparative genomic analysis of the multispecies probiotic-marketed product VSL#3. PMID:29451876
Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing. PMID:29448938
Complete Genome Sequence of Lacinutrix venerupis DOK2-8 Isolated from Marine Sediment from the East Sea, Republic of Korea. PMID:29348352
The variome of pneumococcal virulence factors and regulators. PMID:29298677
The Emerging Fish Pathogen Flavobacterium spartansii Isolated from Chinook Salmon: Comparative Genome Analysis and Molecular Manipulation. PMID:29250046
The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence. PMID:29209284
Comprehensive profiling of functional attributes, virulence potential and evolutionary dynamics in mycobacterial secretomes. PMID:29204714
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads. PMID:29177089
Genomic characterization of a local epidemic Pseudomonas aeruginosa reveals specific features of the widespread clone ST395. PMID:29177088
Comparative Pan-Genome Analysis of Piscirickettsia salmonis Reveals Genomic Divergences within Genogroups. PMID:29164068
Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota. PMID:29118316
Genomic Comparison among Lethal Invasive Strains of Streptococcus pyogenes Serotype M1. PMID:29109702
Genomic features, phylogenetic relationships, and comparative genomics of Elizabethkingia anophelis strain EM361-97 isolated in Taiwan. PMID:29085032
Comparative Genomic Analysis of Globally Dominant ST131 Clone with Other Epidemiologically Successful Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages. PMID:29066550
Complete Genome Sequence and Comparative Analysis of Staphylococcus condimenti DSM 11674, a Potential Starter Culture Isolated from Soy Sauce Mash. PMID:29057223
Draft genome sequence and characterization of commensal Escherichia coli strain BG1 isolated from bovine gastro-intestinal tract. PMID:29046740
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing. PMID:29041965
Comparative genomic analysis and characteristics of NCCP15740, the major type of enterotoxigenic Escherichia coli in Korea. PMID:28943892
Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton. PMID:28895945
Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis. PMID:28855266
In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases. PMID:28837656
Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients. PMID:28827811
PacBio But Not Illumina Technology Can Achieve Fast, Accurate and Complete Closure of the High GC, Complex Burkholderia pseudomallei Two-Chromosome Genome. PMID:28824579
Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections. PMID:28811343
Genome characterization of a novel binary toxin-positive strain of Clostridium difficile and comparison with the epidemic 027 and 078 strains. PMID:28794800
Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics. PMID:28671965
Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853. PMID:28606056
Complete genome sequence of Clostridium perfringens CBA7123 isolated from a faecal sample from Korea. PMID:28588654
A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M. PMID:28535754
Chromosomal features of Escherichia coli serotype O2:K2, an avian pathogenic E. coli. PMID:28496941
Bifidobacterium Bacteremia: Clinical Characteristics and a Genomic Approach To Assess Pathogenicity. PMID:28490487
No evidence for a bovine mastitis Escherichia coli pathotype. PMID:28482799
The Bioinformatics Analysis of Comparative Genomics of Mycobacterium tuberculosis Complex (MTBC) Provides Insight into Dissimilarities between Intraspecific Groups Differing in Host Association, Virulence, and Epitope Diversity. PMID:28377903
Safety Evaluation of a Novel Strain of Bacteroides fragilis. PMID:28367145
The Eukaryote-Like Serine/Threonine Kinase STK Regulates the Growth and Metabolism of Zoonotic Streptococcus suis. PMID:28326294
Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease. PMID:28285331
VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology. PMID:28193166
Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea. PMID:28191041
A Whole-Genome Sequencing Approach To Study Cefoxitin-Resistant Salmonella enterica Serovar Heidelberg Isolates from Various Sources. PMID:28137797
Importance of whole genome sequencing for the assessment of outbreaks in diagnostic laboratories: analysis of a case series of invasive Streptococcus pyogenes infections. PMID:28124734
Whole-Genome Sequences and Classification of Streptococcus agalactiae Strains Isolated from Laboratory-Reared Long-Evans Rats (Rattus norvegicus). PMID:28057750
Comparative genomics analyses revealed two virulent Listeria monocytogenes strains isolated from ready-to-eat food. PMID:27999619
Assessment of virulence potential of uncharacterized Enterococcus faecalis strains using pan genomic approach - Identification of pathogen-specific and habitat-specific genes. PMID:27924951
The Composition and Spatial Patterns of Bacterial Virulence Factors and Antibiotic Resistance Genes in 19 Wastewater Treatment Plants. PMID:27907117
Whole-genome sequencing and comparative genomic analysis of Escherichia coli O91 strains isolated from symptomatic and asymptomatic human carriers. PMID:27891181
Metagenomics of Two Severe Foodborne Outbreaks Provides Diagnostic Signatures and Signs of Coinfection Not Attainable by Traditional Methods. PMID:27881416
A method for automated pathogenic content estimation with application to rheumatoid arthritis. PMID:27846901
Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment. PMID:27822528
Understanding pneumococcal serotype 1 biology through population genomic analysis. PMID:27821148
Draft Genome Sequence of Leifsonia xyli subsp. xyli Strain gdw1. PMID:27795270
Characterization and Comparative Overview of Complete Sequences of the First Plasmids of Pandoraea across Clinical and Non-clinical Strains. PMID:27790203
Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants. PMID:27766204
Complete genome sequence of Vibrio mimicus strain SCCF01 with potential application in fish vaccine development. PMID:27763808
Genomic Comparison of Campylobacter spp. and Their Potential for Zoonotic Transmission between Birds, Primates, and Livestock. PMID:27736787
Draft genome sequence and detailed analysis of Pantoea eucrina strain Russ and implication for opportunistic pathogenesis. PMID:27699151
Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential. PMID:27699150
Draft Genome Sequence of Enterococcus mundtii QAUEM2808, Isolated from Dahi, a Fermented Milk Product. PMID:27635009
Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets. PMID:27634541
Molecular Epidemiology and Genome Dynamics of New Delhi Metallo-β-Lactamase-Producing Extraintestinal Pathogenic Escherichia coli Strains from India. PMID:27600040
Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential. PMID:27583206
Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates. PMID:27583205
Global microbialization of coral reefs. PMID:27572833
Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare. PMID:27562258
Comparative Genome Analysis of Fusobacterium nucleatum. PMID:27540086
A review on host-pathogen interactions: classification and prediction. PMID:27470504
Comparative genomic analysis of Klebsiella pneumoniae subsp. pneumoniae KP617 and PittNDM01, NUHL24835, and ATCC BAA-2146 reveals unique evolutionary history of this strain. PMID:27408624
Target identification in Fusobacterium nucleatum by subtractive genomics approach and enrichment analysis of host-pathogen protein-protein interactions. PMID:27176600
(Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans. PMID:27151933
StreptoBase: An Oral Streptococcus mitis Group Genomic Resource and Analysis Platform. PMID:27138013
Draft genome sequence of non-shiga toxin-producing Escherichia coli O157 NCCP15738. PMID:27096008
Comparative Genomic Analysis Reveals a Possible Novel Non-Tuberculous Mycobacterium Species with High Pathogenic Potential. PMID:27035710
Whole-Genome Sequencing and Comparative Analysis of Mycobacterium brisbanense Reveals a Possible Soil Origin and Capability in Fertiliser Synthesis. PMID:27031249
NeisseriaBase: a specialised Neisseria genomic resource and analysis platform. PMID:27017950
Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species. PMID:26769959
MycoCAP - Mycobacterium Comparative Analysis Platform. PMID:26666970
Brain Meta-Transcriptomics from Harbor Seals to Infer the Role of the Microbiome and Virome in a Stranding Event. PMID:26630132
VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on. PMID:26578559
Comparative genome analysis identifies two large deletions in the genome of highly-passaged attenuated Streptococcus agalactiae strain YM001 compared to the parental pathogenic strain HN016. PMID:26537657
The Landscape of Realized Homologous Recombination in Pathogenic Bacteria. PMID:26516092
The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome. PMID:26489866
Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil. PMID:26483769
Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity--a large-scale system analysis of decoded bacterial genomes. PMID:26459834
Genome architecture of Lactobacillus plantarum PS128, a probiotic strain with potential immunomodulatory activity. PMID:26279684
Genomic and Functional Portrait of a Highly Virulent, CTX-M-15-Producing H30-Rx Subclone of Escherichia coli Sequence Type 131. PMID:26195517
Complete Genome Sequence of Noninvasive Streptococcus pyogenes M/emm28 Strain STAB10015, Isolated from a Child with Perianal Dermatitis in French Brittany. PMID:26184948
Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens. PMID:26083489
Towards New Drug Targets? Function Prediction of Putative Proteins of Neisseria meningitidis MC58 and Their Virulence Characterization. PMID:26076386
Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT. PMID:26025898
Draft Genome Sequences of Three Escherichia coli Strains with Different In Vivo Pathogenicities in an Avian (Ascending) Infection Model of the Oviduct. PMID:25953185
Bacterial pathogens and community composition in advanced sewage treatment systems revealed by metagenomics analysis based on high-throughput sequencing. PMID:25938416
Genomic analysis of a Mycobacterium bovis bacillus [corrected] Calmette-Guérin strain isolated from an adult patient with pulmonary tuberculosis. PMID:25876043
Integrated whole-genome screening for Pseudomonas aeruginosa virulence genes using multiple disease models reveals that pathogenicity is host specific. PMID:25845292
Differential single nucleotide polymorphism-based analysis of an outbreak caused by Salmonella enterica serovar Manhattan reveals epidemiological details missed by standard pulsed-field gel electrophoresis. PMID:25653407
YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia. PMID:25591325
Complete Genome Sequence of VpKK5, a Novel Vibrio parahaemolyticus Lytic Siphophage. PMID:25573936
Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants. PMID:25534766
Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution. PMID:25452339
Identifying pathogenicity islands in bacterial pathogenomics using computational approaches. PMID:25437607
Complete genome sequence and comparative genome analysis of Klebsiella oxytoca HKOPL1 isolated from giant panda feces. PMID:25417012
Comparative genomic analysis shows that avian pathogenic Escherichia coli isolate IMT5155 (O2:K1:H5; ST complex 95, ST140) shares close relationship with ST95 APEC O1:K1 and human ExPEC O18:K1 strains. PMID:25397580
VibrioBase: a model for next-generation genome and annotation database development. PMID:25243218
Draft Genome Sequence of a Serratia marcescens Strain Isolated from a Preterm Neonatal Blood Sepsis Patient at the Royal Infirmary, Edinburgh, Scotland, United Kingdom. PMID:25212627
Draft Genome Sequence of an Enterococcus faecalis Strain Isolated from a Neonatal Blood Sepsis Patient. PMID:25212626
Draft Genome Sequence of a Staphylococcus aureus Isolate Taken from the Blood of a Preterm Neonatal Blood Sepsis Patient. PMID:25212625
Draft Genome Sequence of a Pantoea sp. Isolated from a Preterm Neonatal Blood Sepsis Patient. PMID:25212624
Genomic evidence for the emergence and evolution of pathogenicity and niche preferences in the genus Campylobacter. PMID:25193310
Genetic mechanisms underlying the pathogenicity of cold-stressed Salmonella enterica serovar typhimurium in cultured intestinal epithelial cells. PMID:25192993
Draft Genome Sequence of a Staphylococcus warneri Strain Isolated from a Preterm Neonate Blood Sepsis Patient at the Royal Infirmary, Edinburgh, Scotland. PMID:25189586
Draft Genome Sequence of a Streptococcus agalactiae Strain Isolated from a Preterm Neonate Blood Sepsis Patient at the Royal Infirmary, Edinburgh, Scotland. PMID:25189584
FusoBase: an online Fusobacterium comparative genomic analysis platform. PMID:25149689
HelicoBase: a Helicobacter genomic resource and analysis platform. PMID:25030426
Complete genome assembly and characterization of an outbreak strain of the causative agent of swine erysipelas--Erysipelothrix rhusiopathiae SY1027. PMID:24993343
Gut microbiomes of Indian children of varying nutritional status. PMID:24763225
MP3: a software tool for the prediction of pathogenic proteins in genomic and metagenomic data. PMID:24736651
StaphyloBase: a specialized genomic resource for the staphylococcal research community. PMID:24578355
Genomic reconnaissance of clinical isolates of emerging human pathogen Mycobacterium abscessus reveals high evolutionary potential. PMID:24515248
Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment. PMID:24488312
CoryneBase: Corynebacterium genomic resources and analysis tools at your fingertips. PMID:24466021
A multi-omic analysis of an Enterococcus faecium mutant reveals specific genetic mutations and dramatic changes in mRNA and protein expression. PMID:24373636
Implication of lateral genetic transfer in the emergence of Aeromonas hydrophila isolates of epidemic outbreaks in channel catfish. PMID:24278351
Genome Sequences of Salmonella enterica Serotype Typhimurium Blood Clinical Isolate ST4848/06 and Stool Isolate ST1489/06. PMID:24136846
Complete genome analysis of a Haemophilus parasuis serovar 12 strain from China. PMID:24023711
Virulence and immune response induced by Mycobacterium avium complex strains in a model of progressive pulmonary tuberculosis and subcutaneous infection in BALB/c mice. PMID:23959717
Human health implications of clinically relevant bacteria in wastewater habitats. PMID:23508533
Draft Genome Sequence of Escherichia coli Strain LCT-EC59. PMID:23469355
Simultaneous quantification of multiple bacteria by the BactoChip microarray designed to target species-specific marker genes. PMID:23409037
Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. PMID:23303369
Learning virulent proteins from integrated query networks. PMID:23198735
Massive gene acquisitions in Mycobacterium indicus pranii provide a perspective on mycobacterial evolution. PMID:22965120
Genome-wide identification of Pseudomonas aeruginosa virulence-related genes using a Caenorhabditis elegans infection model. PMID:22911607
Draft genome sequence of Serratia marcescens strain LCT-SM213. PMID:22843602
Draft genome sequence of Escherichia coli LCT-EC106. PMID:22843582
Predictive sequence analysis of the Candidatus Liberibacter asiaticus proteome. PMID:22815919
Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes. PMID:22769602
Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space. PMID:22750305
Molecular characterization of Streptococcus agalactiae and Streptococcus uberis isolates from bovine milk. PMID:22588571
Detection and genotyping of Campylobacter jejuni and Campylobacter coli by use of DNA oligonucleotide arrays. PMID:22354794
Safety assessment of Bifidobacterium longum JDM301 based on complete genome sequences. PMID:22346255
RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336". PMID:22276113
Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. PMID:22272658
Functional bias of positively selected genes in Streptococcus genomes. PMID:22155358
DBETH: a Database of Bacterial Exotoxins for Human. PMID:22102573
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. PMID:22067448
Neisseria Base: a comparative genomics database for Neisseria meningitidis. PMID:21930505
Black reefs: iron-induced phase shifts on coral reefs. PMID:21881615
Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis. PMID:21622743
Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution. PMID:21282711
Inhibition of Klebsiella pneumoniae DnaB helicase by the flavonol galangin. PMID:21210194
Computer aided selection of candidate vaccine antigens. PMID:21067543
HPIDB--a unified resource for host-pathogen interactions. PMID:20946599
A computational genomics pipeline for prokaryotic sequencing projects. PMID:20519285
The association of virulence factors with genomic islands. PMID:19956607
VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens. PMID:18226234
Identification of prophages in bacterial genomes by dinucleotide relative abundance difference. PMID:18030328
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. PMID:17984080
A global view of Staphylococcus aureus whole genome expression upon internalization in human epithelial cells. PMID:17570841
Towards pathogenomics: a web-based resource for pathogenicity islands. PMID:17090594
MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. PMID:17090593 -
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
PubMed citations: 255.
255 articles citing: VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors
Supercarriers of antibiotic resistome in a world's large river. PMID:35897057
Inactivation of Bacteria and Residual Antimicrobials in Hospital Wastewater by Ozone Treatment. PMID:35884116
Effect of bovine lactoferrin on recurrent urinary tract infections: in vitro and in vivo evidences. PMID:35768747
Genome sequence and pathogenicity of Vibrio vulnificus strain MCCC 1A08743 isolated from contaminated prawns. PMID:35766638
Characterization of the pathogenicity of a Bacillus cereus isolate from the Mariana Trench. PMID:35733351
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning. PMID:35725628
Complete Genome Analysis of Highly Pathogenic Non-O1/O139 Vibrio cholerae Isolated From Macrobrachium rosenbergii Reveals Pathogenicity and Antibiotic Resistance-Related Genes. PMID:35664858
Lactobacillus plantarum Lp3a improves functional constipation: evidence from a human randomized clinical trial and animal model. PMID:35434041
A Systematic Immuno-Informatic Approach to Design a Multiepitope-Based Vaccine Against Emerging Multiple Drug Resistant Serratia marcescens. PMID:35371033
Identification of the Genes of the Plant Pathogen Pseudomonas syringae MB03 Required for the Nematicidal Activity Against Caenorhabditis elegans Through an Integrated Approach. PMID:35356513
Antimicrobial resistance patterns and genetic elements associated with the antibiotic resistance of Helicobacter pylori strains from Shanghai. PMID:35354484
Whole genome sequence of pan drug-resistant clinical isolate of Acinetobacter baumannii ST1890. PMID:35263355
Selective targeting of skin pathobionts and inflammation with topically applied lactobacilli. PMID:35243421
Quorum Sensing Controls the CRISPR and Type VI Secretion Systems in Aliivibrio wodanis 06/09/139. PMID:35211539
Comparative Genomic Analysis of Streptococcus pneumoniae Strains: Penicillin Non-susceptible Multi-drug-Resistant Serotype 19A Isolates. PMID:34982234
VFDB 2022: a general classification scheme for bacterial virulence factors. PMID:34850947
Phage Treatment Trial to Eradicate LA-MRSA from Healthy Carrier Pigs. PMID:34696318
Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis. PMID:34650545
Challenges in Drug Discovery for Intracellular Bacteria. PMID:34578204
Identification of FadT as a Novel Quorum Quenching Enzyme for the Degradation of Diffusible Signal Factor in Cupriavidus pinatubonensis Strain HN-2. PMID:34576026
The rise and the fall of a Pseudomonas aeruginosa endemic lineage in a hospital. PMID:34473016
Quest for Novel Preventive and Therapeutic Options Against Multidrug-Resistant Pseudomonas aeruginosa. PMID:34393689
Massilia cellulosiltytica sp. nov., a novel cellulose-degrading bacterium isolated from rhizosphere soil of rice (Oryza sativa L.) and its whole genome analysis. PMID:34324104
Identification and Characterization of Mycobacterial Species Using Whole-Genome Sequences. PMID:34235665
A fatal case of liver abscess caused by hypervirulent Klebsiella pneumoniae in a diabetic adolescent: A clinical and laboratory study. PMID:34179708
Pan-Genome Analysis of Vibrio cholerae and Vibrio metschnikovii Strains Isolated From Migratory Birds at Dali Nouer Lake in Chifeng, China. PMID:34136552
A deep-sea bacterium related to coastal marine pathogens. PMID:34097814
The Perfect Condition for the Rising of Superbugs: Person-to-Person Contact and Antibiotic Use Are the Key Factors Responsible for the Positive Correlation between Antibiotic Resistance Gene Diversity and Virulence Gene Diversity in Human Metagenomes. PMID:34065307
Phenotypic and genomic characterization of a Vibrio parahaemolyticus strain causing disease in Penaeus vannamei provides insights into its niche adaptation and pathogenic mechanism. PMID:33952389
A Comprehensive Assessment of the Safety of Blautia producta DSM 2950. PMID:33922843
Complete Whole Genome Sequences of Escherichia coli Surrogate Strains and Comparison of Sequence Methods with Application to the Food Industry. PMID:33809423
Biodegradation of lignin monomers and bioconversion of ferulic acid to vanillic acid by Paraburkholderia aromaticivorans AR20-38 isolated from Alpine forest soil. PMID:33687503
The complete genome and comparative analysis of the phage phiC120 infecting multidrug-resistant Escherichia coli and Salmonella strains. PMID:33598707
A Uniform Computational Approach Improved on Existing Pipelines to Reveal Microbiome Biomarkers of Nonresponse to Immune Checkpoint Inhibitors. PMID:33593881
An expanding bacterial colony forms a depletion zone with growing droplets. PMID:33480951
Complete genomic sequence and analysis of β2 toxin gene mapping of Clostridium perfringens JXJA17 isolated from piglets in China. PMID:33436645
Genome sequencing and functional annotation of Bacillus sp. strain BS-Z15 isolated from cotton rhizosphere soil having antagonistic activity against Verticillium dahliae. PMID:33399892
Comparative Genome Analysis Reveals the Molecular Basis of Niche Adaptation of Staphylococcus epidermidis Strains. PMID:33240320
Whole-Genome Sequencing Analysis of Quorum Quenching Bacterial Strain Acinetobacter lactucae QL-1 Identifies the FadY Enzyme for Degradation of the Diffusible Signal Factor. PMID:32937869
Draft Genome Sequences of 81 Salmonella enterica Strains from Informal Markets in Cambodia. PMID:32883787
A systematic strategy for the investigation of vaccines and drugs targeting bacteria. PMID:32637049
Draft Genome Sequence of the Bacterium Paraburkholderia aromaticivorans AR20-38, a Gram-Negative, Cold-Adapted Degrader of Aromatic Compounds. PMID:32616634
Municipal Wastewater Surveillance Revealed a High Community Disease Burden of a Rarely Reported and Possibly Subclinical Salmonella enterica Serovar Derby Strain. PMID:32591375
Genome and sequence determinants governing the expression of horizontally acquired DNA in bacteria. PMID:32514119
Whole-Genome Comparative and Pathogenicity Analysis of Salmonella enterica subsp. enterica Serovar Rissen. PMID:32358017
Complete genome sequences of two Enterococcus faecium strains and comparative genomic analysis. PMID:32104261
Pathogenicity and Competitive Fitness of Salmonella enterica Serovar 4,[5],12:i:- Compared to Salmonella Typhimurium and Salmonella Derby in Swine. PMID:32083096
Contents, Construction Methods, Data Resources, and Functions Comparative Analysis of Bacteria Databases. PMID:32071553
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii. PMID:32066773
Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis. PMID:32050896
Complete Genome Sequence Reveals Evolutionary and Comparative Genomic Features of Xanthomonas albilineans Causing Sugarcane Leaf Scald. PMID:32012870
Use of omics methods for the advancement of food quality and food safety. PMID:32002228
Continuous pre- and post-transplant exposure to a disease-associated gut microbiome promotes hyper-acute graft-versus-host disease in wild-type mice. PMID:31928131
Insight into the biology of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members. PMID:31848383
Characterization of the Genome Feature and Toxic Capacity of a Bacillus wiedmannii Isolate From the Hydrothermal Field in Okinawa Trough. PMID:31750261
Complete Genome Sequences of Two Klebsiella pneumoniae Phages Isolated as Part of an International Effort. PMID:31537666
Multiplex transcriptional characterizations across diverse bacterial species using cell-free systems. PMID:31464371
Identification of potential drug targets and vaccine candidates in Clostridium botulinum using subtractive genomics approach. PMID:31359994
Population gene introgression and high genome plasticity for the zoonotic pathogen Streptococcus agalactiae. PMID:31350563
Fishing for vaccines against Vibrio cholerae using in silico pan-proteomic reverse vaccinology approach. PMID:31249730
Antibiotic Resistance Gene Diversity and Virulence Gene Diversity Are Correlated in Human Gut and Environmental Microbiomes. PMID:31043514
Comparative genomic analysis unravels the transmission pattern and intra-species divergence of acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio parahaemolyticus strains. PMID:30968246
Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline. PMID:30964891
Genomic comparison of serogroups O159 and O170 with other Vibrio cholerae serogroups. PMID:30909880
The antibiotic resistance and pathogenicity of a multidrug-resistant Elizabethkingia anophelis isolate. PMID:30891912
PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome. PMID:30871454
Comparative genomic analysis of 127 Escherichia coli strains isolated from domestic animals with diarrhea in China. PMID:30866824
Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters. PMID:30819245
Complete Genome Sequences of Four Salmonella enterica Strains (Including Those of Serotypes Montevideo, Mbandaka, and Lubbock) Isolated from Peripheral Lymph Nodes of Healthy Cattle. PMID:30643887
Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex. PMID:30606234
Genome-Wide Analysis of Mycoplasma dispar Provides Insights into Putative Virulence Factors and Phylogenetic Relationships. PMID:30573467
Complete Genome Sequence of bla IMP-6-Positive Metakosakonia sp. MRY16-398 Isolate From the Ascites of a Diverticulitis Patient. PMID:30524415
Role of Temperate Bacteriophage ϕ20617 on Streptococcus thermophilus DSM 20617T Autolysis and Biology. PMID:30473689
Pilot Safety Evaluation of a Novel Strain of Bacteroides ovatus. PMID:30459813
Genome sequence analysis of an extensively drug-resistant Acinetobacter baumannii indigo-pigmented strain depicts evidence of increase genome plasticity. PMID:30446709
Increased virulence of the oral microbiome in oral squamous cell carcinoma revealed by metatranscriptome analyses. PMID:30420594
VFDB 2019: a comparative pathogenomic platform with an interactive web interface. PMID:30395255
Virulence behavior of uropathogenic Escherichia coli strains in the host model Caenorhabditis elegans. PMID:30381890
A Web Resource for Designing Subunit Vaccine Against Major Pathogenic Species of Bacteria. PMID:30356876
Genomic epidemiology of meticillin-resistant Staphylococcus aureus ST22 widespread in communities of the Gaza Strip, 2009. PMID:30153881
Comparative Genomics and Description of Putative Virulence Factors of Melissococcus plutonius, the Causative Agent of European Foulbrood Disease in Honey Bees. PMID:30127293
The Endophytic Strain Klebsiella michiganensis Kd70 Lacks Pathogenic Island-Like Regions in Its Genome and Is Incapable of Infecting the Urinary Tract in Mice. PMID:30061870
Genetic and Phylogenetic Characteristics of Pasteurella multocida Isolates From Different Host Species. PMID:29997608
Pathway based therapeutic targets identification and development of an interactive database CampyNIBase of Campylobacter jejuni RM1221 through non-redundant protein dataset. PMID:29883471
Genome Sequence of Lactobacillus plantarum JMCC0013, Isolated from Traditional Chinese Fermented Milk. PMID:29880588
Comparative genomic analysis of Myroides odoratimimus isolates. PMID:29797432
Draft Genome Sequence of Enterococcus faecium Strain J19, Isolated from Cabbage. PMID:29622613
Draft Genome Sequence of the 1,4-Dioxane-Degrading Bacterium Pseudonocardia dioxanivorans BERK-1. PMID:29622610
Comparative genomic analysis of ten clinical Streptococcus pneumoniae collected from a Malaysian hospital reveal 31 new unique drug-resistant SNPs using whole genome sequencing. PMID:29448938
A human gut phage catalog correlates the gut phageome with type 2 diabetes. PMID:29391057
The complete genome sequence of Vibrio aestuarianus W-40 reveals virulence factor genes. PMID:29314726
Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife. PMID:29201148
Benefits of Genomic Insights and CRISPR-Cas Signatures to Monitor Potential Pathogens across Drinking Water Production and Distribution Systems. PMID:29097994
Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease. PMID:29041989
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing. PMID:29041965
The gut microbiome in atherosclerotic cardiovascular disease. PMID:29018189
Population-Genomic Insights into Variation in Prevotella intermedia and Prevotella nigrescens Isolates and Its Association with Periodontal Disease. PMID:28983469
Draft Genome Sequence of Lactobacillus salivarius L28 Isolated from Ground Beef. PMID:28963206
Strain Level Streptococcus Colonization Patterns during the First Year of Life. PMID:28932211
Genome characterization of two bile-isolated Vibrio fluvialis strains: an insight into pathogenicity and bile salt adaption. PMID:28928424
Whole-Genome Sequence of the 1,4-Dioxane-Degrading Bacterium Mycobacterium dioxanotrophicus PH-06. PMID:28860235
Genomic insights of Pannonibacter phragmitetus strain 31801 isolated from a patient with a liver abscess. PMID:28857514
In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases. PMID:28837656
Next generation sequencing reveals the antibiotic resistant variants in the genome of Pseudomonas aeruginosa. PMID:28797043
Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins. PMID:28793925
Complete Genome Sequence of Mycoplasma capricolum subsp. capripneumoniae Strain zly1309F, Isolated from Endangered Tibetan Antelope. PMID:28729256
Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics. PMID:28671965
A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. PMID:28626454
Distinct Biological Potential of Streptococcus gordonii and Streptococcus sanguinis Revealed by Comparative Genome Analysis. PMID:28592797
The complete genome sequence of Exiguobacterium arabatum W-01 reveals potential probiotic functions. PMID:28589562
Complete genome sequence of Vibrio campbellii strain 20130629003S01 isolated from shrimp with acute hepatopancreatic necrosis disease. PMID:28580017
Characterization of prophages of Lactococcus garvieae. PMID:28500301
Complete Genome Sequence of Mycoplasma bovis Strain 08M. PMID:28495779
Genome Sequencing Reveals the Complex Polysaccharide-Degrading Ability of Novel Deep-Sea Bacterium Flammeovirga pacifica WPAGA1. PMID:28443080
Draft Genome Sequence of Methylocaldum sp. Strain 14B, an Obligate Hydrogen Sulfide-Tolerant Methanotrophic Strain That Can Convert Biogas to Methanol. PMID:28428289
Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands. PMID:28347342
Complete Genome Sequence of the Plasmid-Bearing Lactobacillus fermentum Strain SNUV175, a Probiotic for Women's Health Isolated from the Vagina of a Healthy South Korean Woman. PMID:28336593
Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease. PMID:28285331
Complete Genome Sequence of Lactobacillus jensenii Strain SNUV360, a Probiotic for Treatment of Bacterial Vaginosis Isolated from the Vagina of a Healthy Korean Woman. PMID:28280032
Global Molecular Epidemiology of IMP-Producing Enterobacteriaceae. PMID:28167555
Bridging Chromosomal Architecture and Pathophysiology of Streptococcus pneumoniae. PMID:28158485
Single-Molecule Sequencing (PacBio) of the Staphylococcus capitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment. PMID:28018320
Complete genome sequence of new bacteriophage phiE142, which causes simultaneously lysis of multidrug-resistant Escherichia coli O157:H7 and Salmonella enterica. PMID:27999624
Complete Genome Sequence of Clostridium estertheticum DSM 8809, a Microbe Identified in Spoiled Vacuum Packed Beef. PMID:27891116
Whole-Genome Enrichment Provides Deep Insights into Vibrio cholerae Metagenome from an African River. PMID:27888291
Effects of a gut pathobiont in a gnotobiotic mouse model of childhood undernutrition. PMID:27881825
Complete Genome Sequence of Brevibacterium linens SMQ-1335. PMID:27834701
Deciphering the virulence factors of the opportunistic pathogen Mycobacterium colombiense. PMID:27818776
Genomic analysis of the multi-drug-resistant clinical isolate Myroides odoratimimus PR63039. PMID:27796642
Evolutionary study of Yersinia genomes deciphers emergence of human pathogenic species. PMID:27796355
Identification of internalin-A-like virulent proteins in Leishmania donovani. PMID:27765050
Complete genome sequence of Vibrio mimicus strain SCCF01 with potential application in fish vaccine development. PMID:27763808
Genomic Comparison of Campylobacter spp. and Their Potential for Zoonotic Transmission between Birds, Primates, and Livestock. PMID:27736787
Characterization of novel bacteriophage phiC119 capable of lysing multidrug-resistant Shiga toxin-producing Escherichia coli O157:H7. PMID:27672499
Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets. PMID:27634541
Whole genomic sequence analysis of Bacillus infantis: defining the genetic blueprint of strain NRRL B-14911, an emerging cardiopathogenic microbe. PMID:27557119
Comparative Genome Analysis of Fusobacterium nucleatum. PMID:27540086
Distinct interacting core taxa in co-occurrence networks enable discrimination of polymicrobial oral diseases with similar symptoms. PMID:27499042
A review on host-pathogen interactions: classification and prediction. PMID:27470504
Whole-Genome Draft Sequences of Six Commensal Fecal and Six Mastitis-Associated Escherichia coli Strains of Bovine Origin. PMID:27469942
Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis. PMID:27461509
Comparative genomic and functional analyses: unearthing the diversity and specificity of nematicidal factors in Pseudomonas putida strain 1A00316. PMID:27384076
Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity. PMID:27286824
Accelerated dysbiosis of gut microbiota during aggravation of DSS-induced colitis by a butyrate-producing bacterium. PMID:27264309
MOCAT2: a metagenomic assembly, annotation and profiling framework. PMID:27153620
Solid tumors provide niche-specific conditions that lead to preferential growth of Salmonella. PMID:27145267
Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape. PMID:27092297
SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli. PMID:27067409
Whole-Genome Sequencing and Comparative Analysis of Mycobacterium brisbanense Reveals a Possible Soil Origin and Capability in Fertiliser Synthesis. PMID:27031249
NeisseriaBase: a specialised Neisseria genomic resource and analysis platform. PMID:27017950
Bifidobacterium thermophilum RBL67 impacts on growth and virulence gene expression of Salmonella enterica subsp. enterica serovar Typhimurium. PMID:26988691
Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh. PMID:26981577
Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections. PMID:26969701
Statistical prediction of protein structural, localization and functional properties by the analysis of its fragment mass distributions after proteolytic cleavage. PMID:26924271
Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient. PMID:26913081
Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition. PMID:26898329
Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain. PMID:26873315
Whole genome sequencing revealed host adaptation-focused genomic plasticity of pathogenic Leptospira. PMID:26833181
Draft Genome Sequences of Five Pseudomonas aeruginosa Clinical Strains Isolated from Sputum Samples from Cystic Fibrosis Patients. PMID:26823574
Core Proteomic Analysis of Unique Metabolic Pathways of Salmonella enterica for the Identification of Potential Drug Targets. PMID:26799565
The Complete Sequence and Comparative Analysis of a Multidrug-Resistance and Virulence Multireplicon IncFII Plasmid pEC302/04 from an Extraintestinal Pathogenic Escherichia coli EC302/04 Indicate Extensive Diversity of IncFII Plasmids. PMID:26793180
Insights from the predicted epitope similarity between Mycobacterium tuberculosis virulent factors and its human homologs. PMID:26770024
Draft Genome Sequence of Streptococcus sp. X13SY08, Isolated from Murray Cod (Maccullochella peelii peelii). PMID:26744370
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED. PMID:26682918
MycoCAP - Mycobacterium Comparative Analysis Platform. PMID:26666970
Genome Analysis of Staphylococcus agnetis, an Agent of Lameness in Broiler Chickens. PMID:26606420
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database. PMID:26578582
VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on. PMID:26578559
Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg. PMID:26566422
Comparative genome analysis identifies two large deletions in the genome of highly-passaged attenuated Streptococcus agalactiae strain YM001 compared to the parental pathogenic strain HN016. PMID:26537657
The Landscape of Realized Homologous Recombination in Pathogenic Bacteria. PMID:26516092
The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome. PMID:26489866
Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity--a large-scale system analysis of decoded bacterial genomes. PMID:26459834
Comparative genome analysis of the candidate functional starter culture strains Lactobacillus fermentum 222 and Lactobacillus plantarum 80 for controlled cocoa bean fermentation processes. PMID:26459565
Development of ListeriaBase and comparative analysis of Listeria monocytogenes. PMID:26444974
Biofilm Formation Mechanisms of Pseudomonas aeruginosa Predicted via Genome-Scale Kinetic Models of Bacterial Metabolism. PMID:26431398
Genome Comparison of an Ancestral Isolate and a Modern Isolate of Mycobacterium tuberculosis of the Beijing Lineage from São Paulo, Brazil. PMID:26430044
A virulent phage infecting Lactococcus garvieae, with homology to Lactococcus lactis phages. PMID:26407890
Comparative genomics of non-pseudomonal bacterial species colonising paediatric cystic fibrosis patients. PMID:26401445
Microbial diversity and activity in the Nematostella vectensis holobiont: insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression. PMID:26388838
Next generation genome sequencing reveals phylogenetic clades with different level of virulence among Salmonella Typhimurium clinical human isolates in Hong Kong. PMID:26370680
Comparative secretomics reveals novel virulence-associated factors of Vibrio parahaemolyticus. PMID:26236293
Comparative analysis of essential genes in prokaryotic genomic islands. PMID:26223387
The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment. PMID:26214836
The prediction of virulence based on presence of virulence genes in E. coli may not always be accurate. PMID:26089987
Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria. PMID:26074885
Comparative genomic and phenomic analysis of Clostridium difficile and Clostridium sordellii, two related pathogens with differing host tissue preference. PMID:26059449
Complete Genome Sequence and Transcriptomic Analysis of the Novel Pathogen Elizabethkingia anophelis in Response to Oxidative Stress. PMID:26019164
Complete Genome Sequence of Streptococcus thermophilus SMQ-301, a Model Strain for Phage-Host Interactions. PMID:25999573
What It Takes to Be a Pseudomonas aeruginosa? The Core Genome of the Opportunistic Pathogen Updated. PMID:25961859
Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis. PMID:25918553
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis. PMID:25916842
A review on computational systems biology of pathogen-host interactions. PMID:25914674
Extensive Within-Host Diversity in Fecally Carried Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli Isolates: Implications for Transmission Analyses. PMID:25903575
Isolation and characterization of a native avirulent strain of Streptococcus suis serotype 2: a perspective for vaccine development. PMID:25891917
Virulence genes in a probiotic E. coli product with a recorded long history of safe use. PMID:25883796
Comparative genome analyses of Serratia marcescens FS14 reveals its high antagonistic potential. PMID:25856195
High correlation between genotypes and phenotypes of environmental bacteria Comamonas testosteroni strains. PMID:25766446
Matrix-assisted laser desorption ionization-time of flight and comparative genomic analysis of M-18 group a Streptococcus strains associated with an acute rheumatic fever outbreak in northeast Italy in 2012 and 2013. PMID:25740772
Complete genome sequence of hypervirulent and outbreak-associated Acinetobacter baumannii strain LAC-4: epidemiology, resistance genetic determinants and potential virulence factors. PMID:25728466
Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy. PMID:25717097
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. PMID:25666585
Differential single nucleotide polymorphism-based analysis of an outbreak caused by Salmonella enterica serovar Manhattan reveals epidemiological details missed by standard pulsed-field gel electrophoresis. PMID:25653407
YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia. PMID:25591325
Identification of horizontally transferred genes in the genus Colletotrichum reveals a steady tempo of bacterial to fungal gene transfer. PMID:25555398
Interrogation of the Burkholderia pseudomallei genome to address differential virulence among isolates. PMID:25536074
In vitro transcriptome analysis of two Chinese isolates of Streptococcus suis serotype 2. PMID:25526982
Identifying pathogenicity islands in bacterial pathogenomics using computational approaches. PMID:25437607
Comparative genomic analysis of Mycobacterium iranicum UM_TJL against representative mycobacterial species suggests its environmental origin. PMID:25417557
The Pathogen-Host Interactions database (PHI-base): additions and future developments. PMID:25414340
Bioinformatic genome comparisons for taxonomic and phylogenetic assignments using Aeromonas as a test case. PMID:25406383
Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains. PMID:25373147
PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands. PMID:25336619
Curation, integration and visualization of bacterial virulence factors in PATRIC. PMID:25273106
Comparative genome analysis and identification of competitive and cooperative interactions in a polymicrobial disease. PMID:25171331
FusoBase: an online Fusobacterium comparative genomic analysis platform. PMID:25149689
Genomic characterization of a large outbreak of Legionella pneumophila serogroup 1 strains in Quebec City, 2012. PMID:25105285
HelicoBase: a Helicobacter genomic resource and analysis platform. PMID:25030426
DBSecSys: a database of Burkholderia mallei secretion systems. PMID:25030112
First Complete Genome Sequence of Staphylococcus xylosus, a Meat Starter Culture and a Host to Propagate Staphylococcus aureus Phages. PMID:25013142
Population dynamics of an Acinetobacter baumannii clonal complex during colonization of patients. PMID:24951812
Comparative genomic analysis of malaria mosquito vector-associated novel pathogen Elizabethkingia anophelis. PMID:24803570
Impact of UV and peracetic acid disinfection on the prevalence of virulence and antimicrobial resistance genes in uropathogenic Escherichia coli in wastewater effluents. PMID:24727265
Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex. PMID:24713045
Streptococcus iniae SF1: complete genome sequence, proteomic profile, and immunoprotective antigens. PMID:24621602
Classification and quantification of bacteriophage taxa in human gut metagenomes. PMID:24621522
Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis. PMID:24599074
StaphyloBase: a specialized genomic resource for the staphylococcal research community. PMID:24578355
Genomic reconnaissance of clinical isolates of emerging human pathogen Mycobacterium abscessus reveals high evolutionary potential. PMID:24515248
Viruses in a 14th-century coprolite. PMID:24509925
Comparative genomics of isolates of a Pseudomonas aeruginosa epidemic strain associated with chronic lung infections of cystic fibrosis patients. PMID:24505294
CoryneBase: Corynebacterium genomic resources and analysis tools at your fingertips. PMID:24466021
A metagenomic framework for the study of airborne microbial communities. PMID:24349140
PATRIC, the bacterial bioinformatics database and analysis resource. PMID:24225323
PathogenFinder--distinguishing friend from foe using bacterial whole genome sequence data. PMID:24204795
Complete Genome Sequence of the Escherichia coli PMV-1 Strain, a Model Extraintestinal Pathogenic E. coli Strain Used for Host-Pathogen Interaction Studies. PMID:24158560
Taxonomic precision of different hypervariable regions of 16S rRNA gene and annotation methods for functional bacterial groups in biological wastewater treatment. PMID:24146837
Nonclinical and clinical Enterococcus faecium strains, but not Enterococcus faecalis strains, have distinct structural and functional genomic features. PMID:24141120
Where does Neisseria acquire foreign DNA from: an examination of the source of genomic and pathogenic islands and the evolution of the Neisseria genus. PMID:24007216
Virulence and immune response induced by Mycobacterium avium complex strains in a model of progressive pulmonary tuberculosis and subcutaneous infection in BALB/c mice. PMID:23959717
Genome sequence and comparative analysis of Avibacterium paragallinarum. PMID:23861570
Genome Sequence of Pseudomonas aeruginosa PA45, a Highly Virulent Strain Isolated from a Patient with Bloodstream Infection. PMID:23704188
IslandViewer update: Improved genomic island discovery and visualization. PMID:23677610
Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona. PMID:23637636
Identification and characterization of potential therapeutic candidates in emerging human pathogen Mycobacterium abscessus: a novel hierarchical in silico approach. PMID:23527108
Evolutionary Genomics of Salmonella enterica Subspecies. PMID:23462113
Simultaneous quantification of multiple bacteria by the BactoChip microarray designed to target species-specific marker genes. PMID:23409037
Preparing synthetic biology for the world. PMID:23355834
SecReT4: a web-based bacterial type IV secretion system resource. PMID:23193298
Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria. PMID:23189144
Biological and physicochemical wastewater treatment processes reduce the prevalence of virulent Escherichia coli. PMID:23160132
The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature. PMID:23028334
A comparison of computational methods for identifying virulence factors. PMID:22880014
Phenotypic and transcriptomic response of auxotrophic Mycobacterium avium subsp. paratuberculosis leuD mutant under environmental stress. PMID:22675497
Whole-genome sequence of Klebsiella pneumonia strain LCT-KP214. PMID:22628509 -
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics
PubMed citations: 86.
86 articles citing: VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning. PMID:35725628
VFDB 2022: a general classification scheme for bacterial virulence factors. PMID:34850947
Phage Treatment Trial to Eradicate LA-MRSA from Healthy Carrier Pigs. PMID:34696318
Molecular Characterization of Multidrug-Resistant Yersinia enterocolitica From Foodborne Outbreaks in Sweden. PMID:34054769
Complete Whole Genome Sequences of Escherichia coli Surrogate Strains and Comparison of Sequence Methods with Application to the Food Industry. PMID:33809423
Distribution of sigma factors delineates segregation of virulent and avirulent Mycobacterium. PMID:33432378
Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma. PMID:33155101
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii. PMID:32066773
Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline. PMID:30964891
VFDB 2019: a comparative pathogenomic platform with an interactive web interface. PMID:30395255
High genomic diversity of multi-drug resistant wastewater Escherichia coli. PMID:29895899
Microbial genomic island discovery, visualization and analysis. PMID:29868902
High-throughput detection of RNA processing in bacteria. PMID:29587634
In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases. PMID:28837656
Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics. PMID:28671965
A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis. PMID:28626454
No evidence for a bovine mastitis Escherichia coli pathotype. PMID:28482799
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. PMID:28472413
The aliphatic amidase AmiE is involved in regulation of Pseudomonas aeruginosa virulence. PMID:28117457
A review on host-pathogen interactions: classification and prediction. PMID:27470504
Whole-Genome Sequencing and Comparative Analysis of Mycobacterium brisbanense Reveals a Possible Soil Origin and Capability in Fertiliser Synthesis. PMID:27031249
NeisseriaBase: a specialised Neisseria genomic resource and analysis platform. PMID:27017950
Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection. PMID:26714629
MycoCAP - Mycobacterium Comparative Analysis Platform. PMID:26666970
VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on. PMID:26578559
Comparative genome analysis identifies two large deletions in the genome of highly-passaged attenuated Streptococcus agalactiae strain YM001 compared to the parental pathogenic strain HN016. PMID:26537657
Sequencing and Analysis of the Pseudomonas fluorescens GcM5-1A Genome: A Pathogen Living in the Surface Coat of Bursaphelenchus xylophilus. PMID:26517369
Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity--a large-scale system analysis of decoded bacterial genomes. PMID:26459834
Differential single nucleotide polymorphism-based analysis of an outbreak caused by Salmonella enterica serovar Manhattan reveals epidemiological details missed by standard pulsed-field gel electrophoresis. PMID:25653407
YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia. PMID:25591325
Identifying pathogenicity islands in bacterial pathogenomics using computational approaches. PMID:25437607
FusoBase: an online Fusobacterium comparative genomic analysis platform. PMID:25149689
HelicoBase: a Helicobacter genomic resource and analysis platform. PMID:25030426
StaphyloBase: a specialized genomic resource for the staphylococcal research community. PMID:24578355
Genomic reconnaissance of clinical isolates of emerging human pathogen Mycobacterium abscessus reveals high evolutionary potential. PMID:24515248
CoryneBase: Corynebacterium genomic resources and analysis tools at your fingertips. PMID:24466021
antibacTR: dynamic antibacterial-drug-target ranking integrating comparative genomics, structural analysis and experimental annotation. PMID:24438389
Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment. PMID:24352003
Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation. PMID:24341328
Crystal structure of a putative quorum sensing-regulated protein (PA3611) from the Pseudomonas-specific DUF4146 family. PMID:24174223
Virulence and immune response induced by Mycobacterium avium complex strains in a model of progressive pulmonary tuberculosis and subcutaneous infection in BALB/c mice. PMID:23959717
Common and pathogen-specific virulence factors are different in function and structure. PMID:23863604
Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment. PMID:23521820
Learning virulent proteins from integrated query networks. PMID:23198735
DFVF: database of fungal virulence factors. PMID:23092926
Genome-wide identification of Pseudomonas aeruginosa virulence-related genes using a Caenorhabditis elegans infection model. PMID:22911607
Metabolic reconstruction for metagenomic data and its application to the human microbiome. PMID:22719234
Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae. PMID:22666370
Comparative transcriptomics of pathogenic and non-pathogenic Listeria species. PMID:22617957
High-density transcriptional initiation signals underline genomic islands in bacteria. PMID:22448273
Detection and genotyping of Campylobacter jejuni and Campylobacter coli by use of DNA oligonucleotide arrays. PMID:22354794
Genomic characterization of the Taylorella genus. PMID:22235352
2011 German Escherichia coli O104:H4 outbreak: whole-genome phylogeny without alignment. PMID:22166159
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. PMID:22158393
Functional bias of positively selected genes in Streptococcus genomes. PMID:22155358
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. PMID:22067448
Mining virulence genes using metagenomics. PMID:22039404
Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge. PMID:22016806
ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. PMID:22009673
Neisseria Base: a comparative genomics database for Neisseria meningitidis. PMID:21930505
Complete genomic sequence of the equol-producing bacterium Eggerthella sp. strain YY7918, isolated from adult human intestine. PMID:21914883
Complete genomic sequence of the O-desmethylangolensin-producing bacterium Clostridium rRNA cluster XIVa strain SY8519, isolated from adult human intestine. PMID:21914882
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species. PMID:21896772
Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18. PMID:21884571
The human gut virome: inter-individual variation and dynamic response to diet. PMID:21880779
FFAS server: novel features and applications. PMID:21715387
Integration and visualization of host-pathogen data related to infectious diseases. PMID:21712250
Virulence determinants, drug resistance and mobile genetic elements of Laribacter hongkongensis: a genome-wide analysis. PMID:21711902
Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis. PMID:21622743
Screening for antimicrobial resistance genes and virulence factors via genome sequencing. PMID:21335393
Inhibition of Klebsiella pneumoniae DnaB helicase by the flavonol galangin. PMID:21210194
Draft genome sequence of Turicibacter sanguinis PC909, isolated from human feces. PMID:21183674
In silico prediction of drug targets in Vibrio cholerae. PMID:21174131
Effective--a database of predicted secreted bacterial proteins. PMID:21071416
Computer aided selection of candidate vaccine antigens. PMID:21067543
Orthogonal alkynyl amino acid reporter for selective labeling of bacterial proteomes during infection. PMID:20632346
A computational genomics pipeline for prokaryotic sequencing projects. PMID:20519285
mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes. PMID:20435682
Detecting genomic islands using bioinformatics approaches. PMID:20395967
Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7. PMID:20107499
The association of virulence factors with genomic islands. PMID:19956607
Genome reannotation of Escherichia coli CFT073 with new insights into virulence. PMID:19930606
Development of a microarray for identification of pathogenic Clostridium spp. PMID:19879710
A comparative genomics, network-based approach to understanding virulence in Vibrio cholerae. PMID:19666715
MyBASE: a database for genome polymorphism and gene function studies of Mycobacterium. PMID:19228437
Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome. PMID:19054114 - http://dx.doi.org/10.1093/nar/GKR989
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citation
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
classification
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
disease
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
gene model annotation
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
pathogen
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
pseudogene
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
virulence
metasource: Fairsharing.org
version: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
prokaryotic genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
phylogenetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
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citation
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
classification
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
disease
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
gene model annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
pathogen
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
pseudogene
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
virulence
metasource: Fairsharing.orgversion: FAIRsharing.org: VFDB; Virulence Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.x2vch3; Last edited: April 26, 2021, 8:21 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
prokaryotic genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.486740
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:56.486740
phylogenetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.486740
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:56.486740
citation classification dna sequences disease gene model annotation pathogen pseudogene virulence genomics prokaryotic genome model organisms phylogenetics mapping
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