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Human Protein Atlas
The Human Protein Atlas is program started with the aim to map of all the human proteins in cells, tissues and organs using integration of various omics technologies. It consists of three parts: Tissue Atlas showing the distribution of proteins acros
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Catalogue of Somatic Mutations in Cancer
A comprehensive database of somatic mutations in human cancer, with browsable analytic website.
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BRCA Share
BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory organizations around the world with open access to BRCA Share (formerly UMD-BRCA1) contains BRCA1 and BRCA2 genetic data. The program’s goal is to acce
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arrayMap - Genome Profiles in Cancer
The arrayMap database and bioinformatics resource facilitates the study of the genetics of human cancer. The Progenetix project provides the data customisation and visualization tools to mine the available data. The arrayMap database is developed by
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Progenetix - genomic copy number aberrations in cancer
The Progenetix database provides an overview of copy number abnormalities in human cancer from Comparative Genomic Hybridization (CGH) experiments. With 30817 cases from 1016 publications (Oct 2013), Progenetix is the largest curated database for who
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canSAR
canSAR is an integrated cancer research and drug discovery resource that brings together large-scale data from different disciplines and allows query and exploration to help cancer research and drug discovery.
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Pancreatic Expression database
The Pancreatic Expression Database (PED) is a repository for pancreatic-derived -omics data. With a generic web-based system, the database provides the research community with an open access tool to mine currently available pancreatic cancer experime
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Network of Cancer Genes
The Network of Cancer Genes (NCG) contains information on duplicability, evolution, protein-protein and microRNA-gene interaction, function, expression and essentiality of cancer genes from manually curated publications . NCG also provides informatio
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PrognoScan
Database for meta-analysis of the prognostic value of genes. It has features of 1) a large collection of publicly available cancer microarray datasets with clinical annotation, as well as 2) a tool for assessing the biological relationship between ge
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ICGC Data Portal
The International Cancer Genome Consortium (ICGC) is a collaborative effort to characterize genomic abnormalities in 50 different cancer types. Currently has data from 24 cancer projects. Open access data (eg. Somatic mutations, copy number alteratio
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GeneSigDB
Gene Signature DataBase
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The Improved Database Of Chimeric Transcripts and RNA-Seq Data
The ESTs and mRNAs from GenBank have been used to identify chimeric RNAs of two or more different genes. By analyzing thousands of chimeric ESTs by RNA sequencing, we found that the expression level of chimeric ESTs is generally low and they are high
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CCDB
Cervical cancer gene database
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Database of Differentially Expressed Proteins in Human Cancer
The dbDEPC is a database of differentially expressed proteins in human cancers.
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MERAV
Metabolic gEne RApid Visualizer
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CancerPPD
Experimentally validated anticancer peptides
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UCSC Cancer Genomics Browser
The UCSC Cancer Genomics Browser is a web-based tool to integrate, visualize and analyze cancer genomics and clinical data. The browser displays whole-genome views of experimental measurements for multiple samples, alongside their associated clinical
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COLT-Cancer
Essential gene profiles in human cancer cell lines
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HLungDB
Database of Human Lung Cancer Research
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ONCO.IO
An integrated knowledge database and network analysis tool for exploring complex gene regulatory networks involved in cancer.
The database content is based on the manually curated annotation of experimentally verified molecular interactions described
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DriverDBv2
DriverDB, a database that incorporates >9500 cancer-related RNA-seq datasets and >7000 more exome-seq datasets, in addition to annotation databases and published bioinformatics algorithms dedicated to driver gene/mutation identification. Seven additi
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Exposome-Explorer
Biomarkers of exposure to disease risk factors
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DNA Methylation Interactive Visualization Database
DNMIVD is a comprehensive annotation and interactive visualization database for DNA methylation profile of diverse human cancer constructed with high throughput microarray data from TCGA and GEO databases, and it also integrates some data from Pancan
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CaSNP
Cancer SNP data on copy number alterations
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Stem Cell Discovery Engine
Comparison system for cancer stem cell analysis
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DDPC
Dragon Database of Genes Implicated in Prostate Cancer is a knowledgebase of genes experimentally verified to be involved in prostate cancer (PC).
DDPC provides gene-associated data such as protein annotation, molecular pathways, ontologies and trans
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CancerMine
Literature-mined resource for drivers, oncogenes and tumor suppressors in cancer.
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The database of eukaryotic RNA binding proteins
EuRBPDB is a comprehensive and user-friendly database for classifying and annotating eukaryotic RNA binding proteins (RBPs) drawn from various public databases. Over 100 eukaryotic species such as human, mouse, fly, worm and yeast are included. EuRBP
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MutationAligner
Somatic mutation hotspots in protein domains in cancer
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PanDrugs
PanDrugs is a method to prioritize anticancer drug treatments according to individual genomic data. PanDrugs current version integrates data from 24 primary sources and supports 56297 drug-target associations obtained from 4804 genes and 9092 unique
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DrugCombDB
DrugCombDB is a comprehensive database dedicated to integrating drug combinations from various data sources, include 1) high-throughput screening assays of drug combinations, 2) external databases, and 3) manual curations from PubMed literature.
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LncTarD
A manually-curated database of experimentally-supported functional lncRNA-target regulations in human diseases.
Search and download the information for the Mutual exclusivity. MutExGenome is a database of Mutual Exclusive mutations in mutiple specie
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MatrisomeDB
The ECM-protein knowledge database.
Please follow MatrisomeDB. MatrisomeDB will be hosted at matrisomedb.org very soon.
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tRFexplorer
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer.
tRFexplorer is a public database through which users may display the expression profile of tRNA-derived ncRNAs in every cel
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LnCeVar
A comprehensive database of genomic variations that disturb ceRNA network regulation.
Genomic VA,T,C,G RIATION disturbing ceRNA regulations.
LnCeVar is a comprehensive database that aims to infer genomic variations that disturb lncRNA-associated ce
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Pedican
An online gene resource for pediatric cancers with literature evidence.
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3DIV
Three-dimensional (3D) chromatin structure is an emerging paradigm for understanding gene regulation mechanisms. Hi-C (high-throughput chromatin conformation capture), a method to detect long-range chromatin interactions, allows extensive genome-wide
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ExonSkipDB
Functional annotation of exon skipping event in human.
Exon skipping (ES), the most common alternative splicing event, has been reported to contribute to diverse human diseases due to the loss of functional domains sites or frame shifting of open re
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CIViCmine
CIViCmine is a literature-mined database of clinically relevant cancer biomarkers from data from PubMed and Pubmed Central Open Access subset.
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CancerTracer
a curated database for intrapatient tumor heterogeneity.
CancerTracer is a manually curated and integrated database aims to help researchers to decipher tumor heterogeneity at individual patient level. It contains two types of tumor heterogeneity da
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Cell-Free Epigenome Atlas (CFEA)
A cell-free epigenome atlas in human diseases | Search and download the information for the Mutual exclusivity. MutExGenome is a database of Mutual Exclusive mutations in mutiple species | Welcome to CFEA (Cell-Free Epigenome Atlas) | The cell-free D
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OncoWiki
An authentic learning approach to teaching cancer genomics.
On this site you can both (a) make and upload, and (b) download and analyse simulated patient case studies.
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NeoPeptide
An immunoinformatic database of T-cell-defined neoantigens.
Interior-Design-Responsive-Website-Templates-Edge.
NeoPeptide is a catalog of epitopes derived from neoantigens, arising from somatic mutations, captured from the literatures and immunolog
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VISDB
a manually curated database of viral integration sites in the human genome.
VISDB, visdb, virus integration site, viral integration, DNA virus, retrovirus, HBV, HPV, HIV, HTLV-1, EBV, AAV2, MCV, MLV, XMRV, gene, fragile site, miRNA, database, resour
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OncoPPi
Explore Protein-Protein Interactions for Cancer Target Discovery Using the OncoPPi Portal.
Translating Genomics Data into Protein-Protein Interaction Networks for Therapeutic Manipulation.
This site provides a platform to facilitate discovery of ne
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HotSpotAnnotations
Database for hotspot mutations and annotations in cancer.
Hotspots, recurrently mutated DNA positions in cancer, are thought to be oncogenic drivers because random chance is unlikely and the knowledge of clear examples of oncogenic hotspots in genes
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GIDB
Knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal (GI) cancer.
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CGIdb
Genetic Interaction-Based Biomarkers Identification for Drug Resistance and Sensitivity in Cancer Cells | Cancer cells generally harbor hundreds of alterations in the cancer genomes and act as crucial factors in the development and progression of can
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dbMMR-Chinese
Variants of DNA mismatch repair genes derived from 33,998 Chinese individuals with and without cancer reveal their highly ethnic-specific nature.
An open-access database of DNA mismatch repair (MMR) gene variants in Chinese population.
DNA mismatch
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RHPCG
a database of the Regulation of the Hippo Pathway in Cancer Genome.
Hippo signaling pathway is a highly conserved pathway, which is consisted of a group of kinases. Dysregulation of Hippo signaling pathway is involved in the initiation and progressi
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PSMD
An extensive database for pan-species microsatellite investigation and marker development.
A Django app for Pan-Species Microsatellite Database.
Pan-Species Microsatellite Database.
Microsatellites (simple repeat sequences, SSRs or short tandem re
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GRNdb
TF-target relationsips inferred from single cell and bulk RNA-seq datasets
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HNCDB
Integrated Gene and Drug Database for Head and Neck Cancer.
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UALCAN
Comprehensive, user-friendly, and interactive web resource for analyzing cancer OMICS data.
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CDRgator
Web-based database, CDRgator (Cancer Drug Resistance navigator) for comparative analysis of gene expression signatures of cancer drug resistance.
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NPCARE
The Database of Natural Products for CAncer gene REgulation in Cancer Types.
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National Cancer Data Base
The National Cancer Data Base (NCDB), a joint program of the Commission on Cancer (CoC) of the American College of Surgeons (ACoS) and the American Cancer Society (ACS), is a nationwide oncology outcomes database for more than 1,500 Commission-accred
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The Cancer Immunome Atlas
The Cancer Immunome Database (TCIA) provides results of comprehensive immunogenomic analyses of next generation sequencing data (NGS) data for 20 solid cancers from The Cancer Genome Atlas (TCGA) and other datasource. The Cancer Immunome Atlas (TCIA)
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PubMeth reviewed methylation database in cancer
An annotated and reviewed database of methylation in cancer. It is based on automated textmining of literature and is afterwards manually curated and annotated.
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iGMDR
An integrative resource for investigating genetic model of drug response in cancer.
An integrative database for investigating genetic model of drug response in cancer.
iGMDR database collects predictive models of response for anti-cancer drugs.
Th
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Genomic Data Commons
The NCI's Genomic Data Commons (GDC) provides the cancer research community with a unified data repository that enables data sharing across cancer genomic studies in support of precision medicine.
The GDC obtains validated datasets from NCI programs
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CLIPS
An interactive retrieval system for clinical trial studies with context-dependent protocol elements.
Clinical trial protocol includes all the steps that should be conducted in clinical trial and all clinical trial start with development of the proto
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BART Cancer
BART Cancer Database is a web resource designed to display putative transcriptional regulators (TRs) that are responsible for up and downregulation of genes in 15 different cancer types in The Cancer Genome Atlas. BART Cancer uses BART (Binding Analy
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Project Data Sphere
Project Data Sphere, LLC, operates a free digital library-laboratory where the research community can broadly share, integrate and analyze historical, de-identified, patient-level data from academic and industry cancer Phase II-III clinical trials.
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IMEx
The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly de
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DepMap
Extracting Biological Insights from the Project Achilles Genome-Scale CRISPR Screens in Cancer Cell Lines | The Cancer Dependency Map Project at Broad Institute | A resource of data and computational tools to expose the vulnerabilities of cancer, and
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Zentrum für Klinische Studien der Universität zu Köln
The Centre for Clinical Trials Cologne (Köln ZKS) aims to support all processes of clinical trials and the quality of patient-oriented clinical research in an academic environment. It supports doctors of University Hospital of Cologne, other clinics,
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dbInDel
A database of enhancer-associated insertion and deletion variants by analysis of H3K27ac ChIP-Seq.
Cancer hallmarks rely on its specific transcriptional programs, which are dysregulated by multiple mechanisms, including genomic aberrations in the DN
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Cancer in Young People in Canada
The Cancer in Young People in Canada (CYP-C) surveillance program collects in-depth data concerning risk factors, health outcomes, quality and accessibility of care, and late effects among children and youth with cancer. CYP-C represents a collaborat
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Handle-On-QOL
A dedicated quality of life resource following the diagnosis and treatment of head and neck cancer.
A unique online database of papers published on quality of life in head and neck cancer.
HANDLE-ON-QOL is a unique online searchable database of all
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CaPSURE
CaPSURE™ is a longitudinal, observational study of approximately 15,000 men with all stages of biopsy-proven prostate cancer. Patients have enrolled at 43 community urology practices, academic medical centers, and VA hospitals throughout the United S
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*ReputationScore indicates how established a given datasource is. Find out more.