Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?
PMID:34932572
The Progenetix oncogenomic resource in 2021.
PMID:34272855
Systemic Multi-Omics Analysis Reveals Amplified P4HA1 Gene Associated With Prognostic and Hypoxic Regulation in Breast Cancer.
PMID:33692831
Dissecting the impact of regional identity and the oncogenic role of human-specific NOTCH2NL in an hESC model of H3.3G34R-mutant glioma.
PMID:33631117
Interleukin-6 trans-signaling is a candidate mechanism to drive progression of human DCCs during clinical latency.
PMID:33020483
Molecular analyses of glioblastoma stem-like cells and glioblastoma tissue.
PMID:32634135
Geographic assessment of cancer genome profiling studies.
PMID:32239182
Modelling cancer progression using Mutual Hazard Networks.
PMID:31250881
Analytical validation and chromosomal distribution of regions of homozygosity by oligonucleotide array comparative genomic hybridization from normal prenatal and postnatal case series.
PMID:30886647
ACGH detects distinct genomic alterations of primary intrahepatic cholangiocarcinomas and matched lymph node metastases and identifies a poor prognosis subclass.
PMID:30006612
Proof of concept: prognostic value of the plasmatic concentration of circulating cell free DNA in desmoid tumors using ddPCR.
PMID:29719606
Disseminated tumour cells with highly aberrant genomes are linked to poor prognosis in operable oesophageal adenocarcinoma.
PMID:28728164
Development of the SIOPE DIPG network, registry and imaging repository: a collaborative effort to optimize research into a rare and lethal disease.
PMID:28110411
A Modular Repository-based Infrastructure for Simulation Model Storage and Execution Support in the Context of In Silico Oncology and In Silico Medicine.
PMID:27812280
A novel microfluidic platform for size and deformability based separation and the subsequent molecular characterization of viable circulating tumor cells.
PMID:26789903
Genome-wide copy number changes and CD133 expression characterized distinct subset of colon polyps: differentiation between incidental polyps and cancer-associated polyps.
PMID:26206347
Sequencing Overview of Ewing Sarcoma: A Journey across Genomic, Epigenomic and Transcriptomic Landscapes.
PMID:26193259
DUSP4 deficiency caused by promoter hypermethylation drives JNK signaling and tumor cell survival in diffuse large B cell lymphoma.
PMID:25847947
FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors.
PMID:25716227
Identification of genomic alterations in pancreatic cancer using array-based comparative genomic hybridization.
PMID:25502777
arrayMap 2014: an updated cancer genome resource.
PMID:25428357
Establishment and Molecular Cytogenetic Characterization of a Cell Culture Model of Head and Neck Squamous Cell Carcinoma (HNSCC).
PMID:24710094
CLPTM1L promotes growth and enhances aneuploidy in pancreatic cancer cells.
PMID:24648346
Quantitative measurement of melanoma spread in sentinel lymph nodes and survival.
PMID:24558354
Discovering subgroups of patients from DNA copy number data using NMF on compacted matrices.
PMID:24278162
Progenetix: 12 years of oncogenomic data curation.
PMID:24225322
The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models.
PMID:24148783
Breast tumors with elevated expression of 1q candidate genes confer poor clinical outcome and sensitivity to Ras/PI3K inhibition.
PMID:24147022
Diagnostic leukapheresis enables reliable detection of circulating tumor cells of nonmetastatic cancer patients.
PMID:24065821
Selection and adaptation during metastatic cancer progression.
PMID:24048069
Are morphological criteria sufficient for the identification of circulating tumor cells in renal cancer?
PMID:24044779
Epigenetic silencing of monoallelically methylated miRNA loci in precancerous colorectal lesions.
PMID:23857251
Learning oncogenetic networks by reducing to mixed integer linear programming.
PMID:23799047
Next generation sequencing in cancer research and clinical application.
PMID:23406336
Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes.
PMID:23132910
Loss-of-heterozygosity on chromosome 19q in early-stage serous ovarian cancer is associated with recurrent disease.
PMID:22967087
Specific genomic regions are differentially affected by copy number alterations across distinct cancer types, in aggregated cytogenetic data.
PMID:22937079
Copy-number-aware differential analysis of quantitative DNA sequencing data.
PMID:22879430
Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome.
PMID:22824167
DNA copy number alterations in central primitive neuroectodermal tumors and tumors of the pineal region: an international individual patient data meta-analysis.
PMID:22772606
Mathematical and statistical modeling in cancer systems biology.
PMID:22754537
Gastrointestinal adenocarcinomas of the esophagus, stomach, and colon exhibit distinct patterns of genome instability and oncogenesis.
PMID:22751462
arrayMap: a reference resource for genomic copy number imbalances in human malignancies.
PMID:22629346
Transient telomere dysfunction induces chromosomal instability and promotes carcinogenesis.
PMID:22622037
Improved multiplex ligation-dependent probe amplification analysis identifies a deleterious PMS2 allele generated by recombination with crossover between PMS2 and PMS2CL.
PMID:22585707
Online resources for genomic structural variation.
PMID:22228017
Pancreatic cancer susceptibility loci and their role in survival.
PMID:22125638
Integrative cancer genomics (IntOGen) in Biomart.
PMID:21903633
Use of integrative epigenetic and cytogenetic analyses to identify novel tumor-suppressor genes in malignant melanoma.
PMID:21606880
Chromosome 8q24 variants are associated with prostate cancer risk in a high risk population of African ancestry.
PMID:21557270
Centromere fission, not telomere erosion, triggers chromosomal instability in human carcinomas.
PMID:21478459
Myc-mediated repression of microRNA-34a promotes high-grade transformation of B-cell lymphoma by dysregulation of FoxP1.
PMID:21460242
CDCOCA: a statistical method to define complexity dependence of co-occuring chromosomal aberrations.
PMID:21371302
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data.
PMID:20972221
Copy number analysis identifies novel interactions between genomic loci in ovarian cancer.
PMID:20844748
Three dysregulated miRNAs control kallikrein 10 expression and cell proliferation in ovarian cancer.
PMID:20354523
A rapid, sensitive, reproducible and cost-effective method for mutation profiling of colon cancer and metastatic lymph nodes.
PMID:20233444
A double-layered mixture model for the joint analysis of DNA copy number and gene expression data.
PMID:20170400
IntOGen: integration and data mining of multidimensional oncogenomic data.
PMID:20111033
A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.
PMID:20101243
Heterochromatin protein 1alpha: a hallmark of cell proliferation relevant to clinical oncology.
PMID:20049717
Quantifying cancer progression with conjunctive Bayesian networks.
PMID:19692554
Rhomboid domain containing 2 (RHBDD2): a novel cancer-related gene over-expressed in breast cancer.
PMID:19616622
Association of chromosome 8q variants with prostate cancer risk in Caucasian and Hispanic men.
PMID:19528667
Public databases and software for the pathway analysis of cancer genomes.
PMID:19455256
The apoptotic machinery as a biological complex system: analysis of its omics and evolution, identification of candidate genes for fourteen major types of cancer, and experimental validation in CML and neuroblastoma.
PMID:19402918
Large-scale genomic analysis of ovarian carcinomas.
PMID:19383377
Combined use of expression and CGH arrays pinpoints novel candidate genes in Ewing sarcoma family of tumors.
PMID:19144156
Conventional and molecular cytogenetics of human non-medullary thyroid carcinoma: characterization of eight cell line models and review of the literature on clinical samples.
PMID:19087340
Chromosomal changes characterize head and neck cancer with poor prognosis.
PMID:18810378
Classification and feature selection algorithms for multi-class CGH data.
PMID:18586749
Classification of human cancers based on DNA copy number amplification modeling.
PMID:18477412
Comprehensive characterization of genomic aberrations in gangliogliomas by CGH, array-based CGH and interphase FISH.
PMID:18371186
Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data.
PMID:18088415
Genomic alterations in sporadic synchronous primary breast cancer using array and metaphase comparative genomic hybridization.
PMID:17603634
From bytes to bedside: data integration and computational biology for translational cancer research.
PMID:17319736
Array-CGH and breast cancer.
PMID:16817944
CGH-Profiler: data mining based on genomic aberration profiles.
PMID:16042799
Microarray comparative genomic hybridization detection of chromosomal imbalances in uterine cervix carcinoma.
PMID:16004614
The interactive online SKY/M-FISH & CGH database and the Entrez cancer chromosomes search database: linkage of chromosomal aberrations with the genome sequence.
PMID:15934046
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.
PMID:15910681